RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4242
(74 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.002
Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 22/79 (27%)
Query: 7 KELAREVFEYTVKSIKR-----IQIEKYNKATSDEERESIILDPYVI---IDKAIENTKP 58
++E +Y V+ + + ++I YN +++ YV + +A++
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYN--VENQQ--------YVAAGDL-RALDTVTN 1867
Query: 59 IL---KLRSIKRAAVTYQM 74
+L KL+ I + +
Sbjct: 1868 VLNFIKLQKIDIIELQKSL 1886
Score = 26.9 bits (59), Expect = 0.58
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 5 GNK---ELAREVFEYTVKSIKRIQIEKYNKATSDEERESIIL 43
G+ + V + +K +++I I + K+ S EE E +
Sbjct: 1857 GDLRALDTVTNVLNF-IK-LQKIDIIELQKSLSLEEVEGHLF 1896
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 32.0 bits (73), Expect = 0.007
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQM 74
+P ++ AIEN P S+ + Y +
Sbjct: 121 NPIQVLVWAIENAAPREDTTSVMFGGIRYHV 151
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 30.8 bits (70), Expect = 0.017
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQ 73
+P ++ AI NT P + +
Sbjct: 128 NPIQVVVDAITNTGPREDTTRVGGGGAARR 157
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T
3j0l_T
Length = 200
Score = 30.8 bits (70), Expect = 0.019
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQ 73
+P + A++N P I A V +
Sbjct: 102 NPLEVFVGAVQNAGPREDSTRIGTAGVVRK 131
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protei complex; 8.70A {Canis
familiaris}
Length = 204
Score = 30.4 bits (69), Expect = 0.030
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 44 DPYVIIDKAIENTKPILKLRSIKRAAVTYQ 73
+P ++ AI N+ P I RA +
Sbjct: 107 NPLQVLVNAIINSGPREDSTRIGRAGTVRR 136
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA
complex, ribonucleoprotein, ribosomal protein,
RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
{Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U
1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K*
3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G
1p87_G 2aw7_G 2avy_G ...
Length = 179
Score = 28.7 bits (65), Expect = 0.11
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M G K A + Y+ +++ + ++ K + A+EN +P +
Sbjct: 30 LMVDGKKSTAESIV-YS--ALETLA-QRSGK------------SELEAFEVALENVRPTV 73
Query: 61 KLRSIKRAAVTYQ 73
+++S + TYQ
Sbjct: 74 EVKSRRVGGSTYQ 86
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus
thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G*
1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G
1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G
2zm6_G 3fic_G* 3mr8_G ...
Length = 151
Score = 28.3 bits (64), Expect = 0.12
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M+ G K LA +F Y + K IQ EK + +P + +A+EN KP +
Sbjct: 25 IMRDGKKNLAARIF-Y--DACKIIQ-EKTGQ------------EPLKVFKQAVENVKPRM 68
Query: 61 KLRSIKRAAVTYQ 73
++RS + YQ
Sbjct: 69 EVRSRRVGGANYQ 81
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 155
Score = 28.3 bits (64), Expect = 0.14
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
++K G K LA ++ Y +++K+IQ +K +P ++ +AI P +
Sbjct: 30 ILKHGKKSLAYQIL-Y--RAVKKIQ-QKTET------------NPLSVLRQAIRGVTPDI 73
Query: 61 KLRSIKRAAVTYQ 73
+++ + T+Q
Sbjct: 74 AVKARRVGGSTHQ 86
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,;
2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Length = 155
Score = 28.3 bits (64), Expect = 0.15
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M G K A+++ YT + I+ E+ K DP + ++A++N P+L
Sbjct: 29 IMIDGKKSKAQKIL-YT--AFDIIR-ERTGK------------DPMEVFEQALKNVMPVL 72
Query: 61 KLRSIKRAAVTYQ 73
++R+ + YQ
Sbjct: 73 EVRARRVGGANYQ 85
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell
cycle, cell division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Length = 149
Score = 27.9 bits (63), Expect = 0.19
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M G K +A+++ Y + I+ EK K DP + +A+EN KP+L
Sbjct: 23 VMWDGKKTIAQKIV-YG--AFDIIR-EKTKK------------DPLEVFRQAVENVKPVL 66
Query: 61 KLRSIKRAAVTYQ 73
++R + TYQ
Sbjct: 67 EVRPRRVGGATYQ 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 0.30
Identities = 6/38 (15%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 19 KSIKRIQ--IEKYNKATSDEERESIILDPYVIIDKAIE 54
+++K++Q ++ Y ++ P + I +E
Sbjct: 20 QALKKLQASLKLYADDSA----------PALAIKATME 47
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA,
transfer RNA, 16S ribosomal subunit, RRF; 3.00A
{Escherichia coli} PDB: 2ykr_G 3oaq_G 3ofa_G 3ofx_G
3ofo_G 3r8o_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G
3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Length = 151
Score = 27.1 bits (61), Expect = 0.34
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 16/73 (21%)
Query: 1 MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
+M G K A + Y+ +++ + ++ K + A+EN +P +
Sbjct: 29 LMVDGKKSTAESIV-YS--ALETLA-QRSGK------------SELEAFEVALENVRPTV 72
Query: 61 KLRSIKRAAVTYQ 73
+++S + TYQ
Sbjct: 73 EVKSRRVGGSTYQ 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.0
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 1 MMKKGNKE--LAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKP 58
++ K +K + ++ E T+ SI I +E K ++ I+D Y I +
Sbjct: 407 VVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 59 ILKL 62
L
Sbjct: 466 PPYL 469
Score = 25.2 bits (54), Expect = 2.3
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 1 MMKKGNKELAREV-------FEYTVKSIKRIQIEKYNKATS-DEERESIILDPYVIIDKA 52
++ K + + + V +++ + IK Q + E+R+ + D V
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 53 IENTKPILKLRS 64
+ +P LKLR
Sbjct: 131 VSRLQPYLKLRQ 142
>3out_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, MURI, cell envelope;
HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Length = 268
Score = 24.8 bits (55), Expect = 2.7
Identities = 1/23 (4%), Positives = 11/23 (47%)
Query: 7 KELAREVFEYTVKSIKRIQIEKY 29
+ + + ++ ++ + ++ Y
Sbjct: 246 RSVGEMFLQTEMQHLEIVSLDSY 268
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi
conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 24.5 bits (54), Expect = 4.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 41 IILDPYVIIDKAIENTKPILKLRSI 65
+ +DPY II K EN K I R I
Sbjct: 270 LAVDPYFIIAKDPENAKLIQTGREI 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.337
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,106,731
Number of extensions: 54768
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 33
Length of query: 74
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 30
Effective length of database: 5,473,269
Effective search space: 164198070
Effective search space used: 164198070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)