RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4242
         (74 letters)



>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
          [TaxId: 274]}
          Length = 145

 Score = 27.1 bits (60), Expect = 0.12
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 1  MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
          +M+ G K LA  +F                       +E    +P  +  +A+EN KP +
Sbjct: 19 IMRDGKKNLAARIFYDAC----------------KIIQEKTGQEPLKVFKQAVENVKPRM 62

Query: 61 KLRSIKRAAVTYQM 74
          ++RS +     YQ+
Sbjct: 63 EVRSRRVGGANYQV 76


>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
          [TaxId: 562]}
          Length = 150

 Score = 25.6 bits (56), Expect = 0.50
 Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 16/74 (21%)

Query: 1  MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
          +M  G K  A  +    ++++ +   +                      + A+EN +P +
Sbjct: 28 LMVDGKKSTAESIVYSALETLAQRSGK----------------SELEAFEVALENVRPTV 71

Query: 61 KLRSIKRAAVTYQM 74
          +++S +    TYQ+
Sbjct: 72 EVKSRRVGGSTYQV 85


>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 24.8 bits (54), Expect = 0.82
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 1  MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
          +M  G K  A                +K      D  RE    DP  + ++A++N  P+L
Sbjct: 21 IMIDGKKSKA----------------QKILYTAFDIIRERTGKDPMEVFEQALKNVMPVL 64

Query: 61 KLRSIKRAAVTYQM 74
          ++R+ +     YQ+
Sbjct: 65 EVRARRVGGANYQV 78


>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score = 24.2 bits (52), Expect = 1.3
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYV 47
           + K        E+ E  + S   +   K N  +    R+  I   Y+
Sbjct: 70  LAKNIGNAGFNEIMECCLPSEDPV---KPNPGSDMIARKDYITAKYM 113


>d2v4jb3 d.134.1.1 (B:136-208,B:278-381) Dissimilatory sulfite
           reductase subunit beta, DsrB {Desulfovibrio vulgaris
           [TaxId: 881]}
          Length = 177

 Score = 23.9 bits (51), Expect = 2.2
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 11  REVFEYTVKSIKRIQIEKYNKATSDEERESIILDP 45
              +E   +  +RI  E++   T  E    +I D 
Sbjct: 127 AYKYERLGEWAERIGWERFFSLTGLEFSHHLIDDF 161


>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId:
           274]}
          Length = 131

 Score = 23.6 bits (50), Expect = 2.2
 Identities = 6/37 (16%), Positives = 18/37 (48%)

Query: 5   GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESI 41
           G+ +  +    +T + +K+++ +K        ER+ +
Sbjct: 92  GDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKL 128


>d2ajta2 c.85.1.2 (A:1-328) L-arabinose isomerase AraA {Escherichia
           coli [TaxId: 562]}
          Length = 328

 Score = 24.0 bits (52), Expect = 2.3
 Identities = 10/68 (14%), Positives = 26/68 (38%)

Query: 5   GNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPILKLRS 64
           G+K  A+  F ++V +     + +   + SD +  +++ +                K ++
Sbjct: 193 GDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQN 252

Query: 65  IKRAAVTY 72
           +  AA   
Sbjct: 253 VLEAARIE 260


>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score = 23.3 bits (50), Expect = 3.0
 Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 1   MMKKGNKELAREVFEYTVKSI----KRIQIEKYNKATSDEERESIILDPYVIIDKAIENT 56
           +M+ G             +      K+++  +  K       +    +P  ++  AIEN 
Sbjct: 57  VMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENA 116

Query: 57  KPILKLRSIKRAAVTYQM 74
            P     S+    + Y +
Sbjct: 117 APREDTTSVMFGGIRYHV 134


>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal
           domain {Salmonella typhimurium [TaxId: 90371]}
          Length = 368

 Score = 22.9 bits (48), Expect = 5.0
 Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 2   MKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERE 39
             K       E  +  +  ++R + ++        E E
Sbjct: 327 FLKAGGVFTDEAIDAYIA-LRREEDDRVRMTPHPVEFE 363


>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA
           polymerases {Escherichia coli [TaxId: 562]}
          Length = 388

 Score = 22.3 bits (47), Expect = 8.9
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 1   MMKKGNKELAREVFEYTVKSIKRIQIEKYNKATSDEERESIILDPYVIIDKAIENTKPIL 60
             +K  +E    V+E  V+  +R  +E++  +    E +           K   + +P L
Sbjct: 90  NYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPL 149

Query: 61  KLRSI 65
           K  SI
Sbjct: 150 KWVSI 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.131    0.337 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,459
Number of extensions: 10613
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 14
Length of query: 74
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 33
Effective length of database: 1,844,666
Effective search space: 60873978
Effective search space used: 60873978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)