Query psy4243
Match_columns 104
No_of_seqs 110 out of 845
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:28:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4243.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4243hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gty_S TF, 30S ribosomal prote 100.0 4.3E-44 1.5E-48 255.0 9.5 101 2-103 43-149 (149)
2 3i1m_G 30S ribosomal protein S 100.0 1.7E-44 5.7E-49 263.5 7.4 102 2-104 50-157 (179)
3 1rss_A Ribosomal protein S7; R 100.0 8.8E-44 3E-48 253.8 9.2 101 2-103 45-151 (151)
4 1hus_A Ribosomal protein S7; R 100.0 1.5E-43 5.3E-48 253.5 9.3 101 2-103 49-155 (155)
5 3bbn_G Ribosomal protein S7; s 100.0 7.3E-42 2.5E-46 244.8 7.8 100 2-102 50-155 (155)
6 3r8n_G 30S ribosomal protein S 100.0 3.1E-39 1E-43 230.4 9.4 97 2-99 49-151 (151)
7 2xzm_G Ribosomal protein S7 co 100.0 1.9E-34 6.4E-39 213.4 9.8 94 2-96 95-200 (200)
8 3u5c_F RP14, S2, YS8, 40S ribo 100.0 8.8E-34 3E-38 212.7 9.0 95 2-96 121-225 (225)
9 1iqv_A Ribosomal protein S7; R 100.0 3.4E-33 1.2E-37 208.6 9.1 95 2-96 114-218 (218)
10 2zkq_g 40S ribosomal protein S 100.0 1.7E-34 5.7E-39 214.2 0.0 95 2-96 100-204 (204)
11 1pd3_A Nonstructural protein N 25.7 90 0.0031 18.1 3.4 24 42-65 13-38 (58)
12 3fwb_B Nuclear mRNA export pro 24.2 1.1E+02 0.0036 17.6 3.6 16 61-76 8-23 (55)
13 3fwc_B Nuclear mRNA export pro 24.1 93 0.0032 19.3 3.6 32 61-100 38-69 (85)
No 1
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-44 Score=254.96 Aligned_cols=101 Identities=28% Similarity=0.448 Sum_probs=97.1
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 75 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~ 75 (104)
||..|+.+|+++|.+||+|++|. ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus 43 I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqvPv~v~~~rr~~lAirWi~~~ar~r~-~k~m~~~LA~Eli~A~ 121 (149)
T 3gty_S 43 IREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAARAKK-GRPMKEKLAEEIIAAY 121 (149)
T ss_dssp HHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEEEECCTHHHHHHHHHHHHHHHHTCS-SSCHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 56778999999999999999997 7899999999999999999999999999999876 6899999999999999
Q ss_pred cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243 76 DNKGKVVKKKTDLHRQCEANRAYAHYYF 103 (104)
Q Consensus 76 ~~~g~aikkK~elhK~A~aNRa~ahyrw 103 (104)
+|+|.+++||||+||||++||||+||||
T Consensus 122 ~~~g~aikKKee~hkmAeaNRAfahyRw 149 (149)
T 3gty_S 122 NNTGTAIKKKEDTHRMAEANRAFAHYRW 149 (149)
T ss_dssp TTCSHHHHHHHHHHHHHTTSGGGCTTCC
T ss_pred hCCchhhhHHHHHHHHHHHhHhHhhcCC
Confidence 9999999999999999999999999998
No 2
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=100.00 E-value=1.7e-44 Score=263.49 Aligned_cols=102 Identities=29% Similarity=0.444 Sum_probs=93.0
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 75 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~ 75 (104)
||..|+.+|+++|++||+|++|. ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus 50 I~~kt~~nPl~vl~~AI~Nv~P~veVks~rvGG~tyqVPv~V~p~Rr~~lAirWii~~arkR~-~k~m~erLA~ELidAa 128 (179)
T 3i1m_G 50 LAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAA 128 (179)
T ss_dssp HHHHHCSCSHHHHHHHHHHHCCSEEEECCCCSSSCCCEEEECCTTHHHHHHHHHHHHHHTTCC-SSSHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEccccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 56778899999999999999997 8899999999999999999999999999999876 6999999999999999
Q ss_pred cCCChhHHhHHHHHHHHHHhhhhcccccC
Q psy4243 76 DNKGKVVKKKTDLHRQCEANRAYAHYYFG 104 (104)
Q Consensus 76 ~~~g~aikkK~elhK~A~aNRa~ahyrw~ 104 (104)
+|+|.+++||||+||||++||||+|||||
T Consensus 129 ~~~G~AikKKee~HkmAeANRAfaHyRw~ 157 (179)
T 3i1m_G 129 ENKGTAVKKREDVHRMAEANKAFAHYRWL 157 (179)
T ss_dssp TSCSHHHHHHHHHHHHTTTGGGGC-----
T ss_pred hCcchhhhHHHHHHHHHHHhHhHHhhccc
Confidence 99999999999999999999999999998
No 3
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=100.00 E-value=8.8e-44 Score=253.85 Aligned_cols=101 Identities=31% Similarity=0.481 Sum_probs=91.7
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 75 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~ 75 (104)
||..|+.+|+++|++||+|++|. ++||++||||++|+|.||+++||+||+++|++|+ +++|++|||+||+||+
T Consensus 45 i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqvPv~v~~~Rr~~lAirWi~~~ar~r~-~k~m~~~La~EiidA~ 123 (151)
T 1rss_A 45 IQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRP-ERRAAVRIAHELMDAA 123 (151)
T ss_dssp HHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEEECCHHHHHHHHHHHHHHHHTTSS-CSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 56678899999999999999996 8899999999999999999999999999999876 5899999999999999
Q ss_pred cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243 76 DNKGKVVKKKTDLHRQCEANRAYAHYYF 103 (104)
Q Consensus 76 ~~~g~aikkK~elhK~A~aNRa~ahyrw 103 (104)
+|+|.+++||||+||||++||||+||||
T Consensus 124 ~~~g~aikKKee~hrmAeaNRAfahyRw 151 (151)
T 1rss_A 124 EGKGGAVKKKEDVERMAEANRAYAHYRW 151 (151)
T ss_dssp TTCSHHHHHHHHHHHHHCC-----CSCC
T ss_pred hCCCceeehHHHHHHHHHHhHhhhccCC
Confidence 9999999999999999999999999998
No 4
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=100.00 E-value=1.5e-43 Score=253.51 Aligned_cols=101 Identities=26% Similarity=0.438 Sum_probs=88.9
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 75 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~ 75 (104)
||..|+.+|+++|.+||+|++|. ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus 49 I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~ 127 (155)
T 1hus_A 49 IRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRN-EKTMEERLANEIMDAA 127 (155)
T ss_dssp HHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEEECCHHHHHHHHHHHHHHHHHHSC-SSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 56678889999999999999997 8899999999999999999999999999999876 5899999999999999
Q ss_pred cCCChhHHhHHHHHHHHHHhhhhccccc
Q psy4243 76 DNKGKVVKKKTDLHRQCEANRAYAHYYF 103 (104)
Q Consensus 76 ~~~g~aikkK~elhK~A~aNRa~ahyrw 103 (104)
+|+|.+++||||+||||++||||+||||
T Consensus 128 ~~~g~aikKKee~hrmAeaNRAfahyRw 155 (155)
T 1hus_A 128 NNTGAAVKKREDTHKMAEANKAFAHYRW 155 (155)
T ss_dssp TTCSHHHHHHHHHHHHHHHC--------
T ss_pred hCCCceeehHHHHHHHHHHhHhhhccCC
Confidence 9999999999999999999999999998
No 5
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=7.3e-42 Score=244.82 Aligned_cols=100 Identities=25% Similarity=0.429 Sum_probs=96.1
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 75 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~ 75 (104)
||..|+.+|+++|.+||+|++|. ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus 50 i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv~v~~~Rr~~lAirWi~~~ar~R~-~k~m~~~La~EiidA~ 128 (155)
T 3bbn_G 50 IQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGAARKRP-GRNMAFKLSSELVDAA 128 (155)
T ss_dssp TTTTCSSCTTHHHHHHGGGTCCSEEECCEEETTEEECCEEECCHHHHHHHHTTHHHHHHHTCC-SSCHHHHHHHHHHHHH
T ss_pred HHHHcCCChHHHHHHHHHhCCCCeEEEEeccCCeEEEEeeecCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 67788899999999999999997 8899999999999999999999999999999876 5899999999999999
Q ss_pred cCCChhHHhHHHHHHHHHHhhhhcccc
Q psy4243 76 DNKGKVVKKKTDLHRQCEANRAYAHYY 102 (104)
Q Consensus 76 ~~~g~aikkK~elhK~A~aNRa~ahyr 102 (104)
+|+|.+++||||+||||++||||+|||
T Consensus 129 ~~~g~aikKKee~hkmAeaNRAfahyR 155 (155)
T 3bbn_G 129 KGSGDAVRKKEETHRMAEANRAFAHFR 155 (155)
T ss_dssp HTCHHHHHHHHHHHHHSSSSGGGSCCC
T ss_pred hCCCchhhHHHHHHHHHHHHHhhhcCC
Confidence 999999999999999999999999998
No 6
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=100.00 E-value=3.1e-39 Score=230.40 Aligned_cols=97 Identities=29% Similarity=0.428 Sum_probs=93.1
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGA 75 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k~~~~~~~~~La~Eii~A~ 75 (104)
||..|+.+|+++|.+||+|++|. ++||++||||++|+|.||+++||+||+++|++|+ +++|+++||+||+||+
T Consensus 49 I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~tyqvPv~v~~~Rr~~lAirWii~~ar~r~-~k~m~~~LA~ElidA~ 127 (151)
T 3r8n_G 49 LAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKRG-DKSMALRLANELSDAA 127 (151)
T ss_dssp HHTTTCSCSHHHHHHHHHHHCCSEEECCCCCSSCCCCCEEECCHHHHHHHHHHHHHHHHHTCC-SSCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHhcCCCeEEEEEeeCCEEEEEecccCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 67789999999999999999997 8899999999999999999999999999999876 6899999999999999
Q ss_pred cCCChhHHhHHHHHHHHHHhhhhc
Q psy4243 76 DNKGKVVKKKTDLHRQCEANRAYA 99 (104)
Q Consensus 76 ~~~g~aikkK~elhK~A~aNRa~a 99 (104)
+|+|.+++||||+||||++||||+
T Consensus 128 ~~~g~aikKKee~hkmAeaNrAfa 151 (151)
T 3r8n_G 128 ENKGTAVKKREDVHRMAEANKAFA 151 (151)
T ss_dssp TTCSSHHHHHHHHHHHHHHGGGCC
T ss_pred hCcchhhhHHHHHHHHHHHhhccC
Confidence 999999999999999999999996
No 7
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=100.00 E-value=1.9e-34 Score=213.42 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=89.5
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHH
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKD---KPSEVRFSDNLAQILI 72 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~---k~~~~~~~~~La~Eii 72 (104)
||..|+.+|+++|.+||+|++|. ++||++||||++|+|.||+++||+||+++|++ |+ +++|++|||+||+
T Consensus 95 I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~-~k~m~e~LA~Eii 173 (200)
T 2xzm_G 95 IHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKS-MRSIAETLADEII 173 (200)
T ss_dssp HHHHHCSCTHHHHHHHHHHSSCSEEEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccC-CCcHHHHHHHHHH
Confidence 56778999999999999999997 78999999999999999999999999999998 54 6899999999999
Q ss_pred HHhcC---CChhHHhHHHHHHHHHHhh
Q psy4243 73 DGADN---KGKVVKKKTDLHRQCEANR 96 (104)
Q Consensus 73 ~A~~~---~g~aikkK~elhK~A~aNR 96 (104)
||++| +|.|++||||+||||++||
T Consensus 174 dAa~~~~~~g~AikKKee~hrmAeANR 200 (200)
T 2xzm_G 174 NAEKNNTQSSWAIRKKDEIEKVAKGNR 200 (200)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCccCcchhhHHHHHHHHHhcC
Confidence 99999 9999999999999999997
No 8
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=100.00 E-value=8.8e-34 Score=212.69 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=88.3
Q ss_pred ccccccChHHHHHHHhhhcccce----eec--ceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI----KAH--LASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID 73 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~----r~g--G~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~ 73 (104)
||..|+.+|+++|.+||+|++|. ++| |++||||++|+|.||+++|||||+++|+++ +++++|++|||+||||
T Consensus 121 I~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerLA~ELid 200 (225)
T 3u5c_F 121 INVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELIN 200 (225)
T ss_dssp HHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSSCCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCEEEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 57789999999999999999997 554 889999999999999999999999999983 3479999999999999
Q ss_pred HhcCCCh--hHHhHHHHHHHHHHhh
Q psy4243 74 GADNKGK--VVKKKTDLHRQCEANR 96 (104)
Q Consensus 74 A~~~~g~--aikkK~elhK~A~aNR 96 (104)
|++|+|+ |++||||+||||++||
T Consensus 201 Aa~~~G~s~AiKKKee~HRmAeANR 225 (225)
T 3u5c_F 201 AAKGSSTSYAIKKKDELERVAKSNR 225 (225)
T ss_dssp HHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred HHhCCCcchhhHHHHHHHHHHHhcC
Confidence 9999996 9999999999999998
No 9
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=100.00 E-value=3.4e-33 Score=208.56 Aligned_cols=95 Identities=19% Similarity=0.114 Sum_probs=89.0
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID 73 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~ 73 (104)
||..|+.+|+++|++||+|++|. ++||++||||++|+|.||+++|||||+++|+++ +++++|+++||+||+|
T Consensus 114 I~~~t~~nPl~Vl~~Ai~N~~P~~ev~~~r~GG~~yqvPV~V~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~ 193 (218)
T 1iqv_A 114 IEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIIL 193 (218)
T ss_dssp HHHHHSSCHHHHHHHHHHHHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 56778999999999999999997 789999999999999999999999999999983 2468999999999999
Q ss_pred HhcCCC--hhHHhHHHHHHHHHHhh
Q psy4243 74 GADNKG--KVVKKKTDLHRQCEANR 96 (104)
Q Consensus 74 A~~~~g--~aikkK~elhK~A~aNR 96 (104)
|++|+| .+++||+|+||||++||
T Consensus 194 Aa~~~g~s~AikKKee~hRmAeaNR 218 (218)
T 1iqv_A 194 AANKDPKSYAYSKKLEIERIAESSR 218 (218)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCcchhhHHHHHHHHHHhcC
Confidence 999986 99999999999999997
No 10
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=1.7e-34 Score=214.18 Aligned_cols=95 Identities=20% Similarity=0.192 Sum_probs=89.7
Q ss_pred ccccccChHHHHHHHhhhcccce------eecceeeeeccccChhHHHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHH
Q psy4243 2 LHLVCQDLIWVCLVLGLCNILTI------KAHLASIKVPIPISDKEARFKCMKWHIEIAKDK--PSEVRFSDNLAQILID 73 (104)
Q Consensus 2 ~~~~~~~~~~~~L~~Ai~nv~P~------r~gG~~~qvP~~i~~~rr~~lAirWii~~a~~k--~~~~~~~~~La~Eii~ 73 (104)
||..|+.+|+++|++||+|++|. ++||++||||++|+|.||+++|||||+++|+++ +++++|++|||+||+|
T Consensus 100 I~~kt~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~LA~Elid 179 (204)
T 2zkq_g 100 IHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELIN 179 (204)
Confidence 67889999999999999999997 789999999999999999999999999999983 3468999999999999
Q ss_pred HhcCCCh--hHHhHHHHHHHHHHhh
Q psy4243 74 GADNKGK--VVKKKTDLHRQCEANR 96 (104)
Q Consensus 74 A~~~~g~--aikkK~elhK~A~aNR 96 (104)
|++|+|. +++||||+||||++||
T Consensus 180 Aa~~~g~s~AikKKee~hrmAeANR 204 (204)
T 2zkq_g 180 AAKGSSNSYAIKKKDELERVAKSNR 204 (204)
Confidence 9999987 9999999999999997
No 11
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=25.73 E-value=90 Score=18.06 Aligned_cols=24 Identities=25% Similarity=0.614 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCHHH
Q psy4243 42 ARFKCMKWHIEIAKDK--PSEVRFSD 65 (104)
Q Consensus 42 r~~lAirWii~~a~~k--~~~~~~~~ 65 (104)
+.+--|||+|+.++.+ ..+++|..
T Consensus 13 qKFEeIRwlIeE~Rh~Lk~TensfeQ 38 (58)
T 1pd3_A 13 QKFEEIRWLIEEVRHRLKITENSFEQ 38 (58)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 4566799999999986 34566654
No 12
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1.1e+02 Score=17.60 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhc
Q psy4243 61 VRFSDNLAQILIDGAD 76 (104)
Q Consensus 61 ~~~~~~La~Eii~A~~ 76 (104)
+.+-+.|++||.+|+-
T Consensus 8 ~~iI~sLs~eLy~AFi 23 (55)
T 3fwb_B 8 KDFIDTMTRELYDAFL 23 (55)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3578899999999973
No 13
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=24.07 E-value=93 Score=19.29 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhcCCChhHHhHHHHHHHHHHhhhhcc
Q psy4243 61 VRFSDNLAQILIDGADNKGKVVKKKTDLHRQCEANRAYAH 100 (104)
Q Consensus 61 ~~~~~~La~Eii~A~~~~g~aikkK~elhK~A~aNRa~ah 100 (104)
+.+-+.|++||.+|+- .|-++.....-+|-.+
T Consensus 38 ~~iI~sLs~eLy~AFi--------hE~lY~~~leskAd~f 69 (85)
T 3fwc_B 38 KDFIDTMTRELYDAFL--------HERLYLIYMDSRAELK 69 (85)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4789999999999983 3455555555554443
Done!