RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4243
(104 letters)
>gnl|CDD|235398 PRK05302, PRK05302, 30S ribosomal protein S7; Validated.
Length = 156
Score = 62.8 bits (154), Expect = 6e-14
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 29 ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
A+ +VP+ + + + M+W +E A+ + E ++ LA L+D A+N+G VKK+ D
Sbjct: 83 ATYQVPVEVRPERRQALAMRWLVEAARKR-GEKTMAERLANELLDAANNRGAAVKKREDT 141
Query: 89 HRQCEANRAYAHYYF 103
HR EAN+A+AHY +
Sbjct: 142 HRMAEANKAFAHYRW 156
>gnl|CDD|215771 pfam00177, Ribosomal_S7, Ribosomal protein S7p/S5e. This family
contains ribosomal protein S7 from prokaryotes and S5
from eukaryotes.
Length = 149
Score = 59.5 bits (145), Expect = 1e-12
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 29 ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
A+ +VP+ +S + ++W +E A+ + S ++ LA LID A+NKG +KKK +
Sbjct: 83 ATYQVPVEVSPERRVALAIRWILEAARKR-SGKSMAEKLANELIDAANNKGSAIKKKEET 141
Query: 89 HRQCEANR 96
H+ EANR
Sbjct: 142 HKMAEANR 149
>gnl|CDD|233238 TIGR01029, rpsG_bact, ribosomal protein S7, bacterial/organelle.
This model describes the bacterial and organellar branch
of the ribosomal protein S7 family (includes prokaroytic
S7 and eukaryotic S5). The eukaryotic and archaeal
branch is described by model TIGR01028 [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 154
Score = 57.3 bits (139), Expect = 9e-12
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 29 ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
A+ +VP+ + ++W IE A K ++ LA ++D A+N G +KK+ D
Sbjct: 81 ATYQVPVEVRPSRRYALAIRWLIEAA-RKRGGKSMAERLANEILDAANNTGAAIKKREDT 139
Query: 89 HRQCEANRAYAHY 101
HR EAN+A+AHY
Sbjct: 140 HRMAEANKAFAHY 152
>gnl|CDD|176994 CHL00053, rps7, ribosomal protein S7.
Length = 155
Score = 54.5 bits (132), Expect = 1e-10
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 33 VPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDLHRQC 92
VPI I + ++W ++ ++ + + L+ L+D A G ++KK + HR
Sbjct: 87 VPIEIGSTRGKALAIRWLLKASRKRSGR-NMAFKLSSELVDAAKGSGNAIRKKEETHRMA 145
Query: 93 EANRAYAHY 101
EANRA+AH+
Sbjct: 146 EANRAFAHF 154
>gnl|CDD|223127 COG0049, RpsG, Ribosomal protein S7 [Translation, ribosomal
structure and biogenesis].
Length = 148
Score = 48.3 bits (116), Expect = 2e-08
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 29 ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
A+ +VP+ + + ++W +E A+ + +E ++ LA LID A+N G +KKK D
Sbjct: 82 ATYQVPVEVRPRRRVALALRWIVEGARKR-NEKTMAERLANELIDAANNTGAAIKKKEDT 140
Query: 89 HRQCEANR 96
HR EANR
Sbjct: 141 HRMAEANR 148
>gnl|CDD|164550 CHL00164, psaK, photosystem I subunit X; Validated.
Length = 86
Score = 27.9 bits (62), Expect = 0.51
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 1 MLHLVCQDLIW---VCLVLGLCNILTIKAHLASIKV-----PIPIS 38
+L LV Q W +++ LCN+L I A +I+V IPIS
Sbjct: 6 LLSLVPQTSPWSASTAIIMILCNLLCIVAGRYAIQVRGLGPSIPIS 51
>gnl|CDD|107312 cd06317, PBP1_ABC_sugar_binding_like_8, Periplasmic sugar-binding
domain of uncharacterized ABC-type transport systems.
Pperiplasmic sugar-binding domain of uncharacterized
ABC-type transport systems that share homology with a
family of pentose/hexose sugar-binding proteins of the
type I periplasmic binding protein superfamily, which
consists of two domains connected by a three-stranded
hinge. The substrate specificity of this group is not
known, but it is predicted to be involved in the
transport of sugar-containing molecules and chemotaxis.
Length = 275
Score = 28.2 bits (63), Expect = 0.66
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 24 IKAHLASIKVPI---PISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGK 80
KA A I V I IS+K F D S+ S A+ + KG+
Sbjct: 75 RKAKQAGIPVVITNSNISEKGFEF----IKSFTGPDDISQGERS---AEAMCKALGGKGQ 127
Query: 81 VV 82
+V
Sbjct: 128 IV 129
>gnl|CDD|219172 pfam06778, Chlor_dismutase, Chlorite dismutase. This family
contains chlorite dismutase enzymes of bacterial and
archaeal origin. This enzyme catalyzes the
disproportionation of chlorite into chloride and oxygen.
Note that many family members are hypothetical proteins.
Length = 192
Score = 26.9 bits (60), Expect = 1.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 39 DKEARFKCMKWHIEIAKDKPSEVR 62
E R + M H IA+ +VR
Sbjct: 118 PFEERRRIMAEHGMIARKYADKVR 141
>gnl|CDD|225792 COG3253, ywfI, Predicted heme peroxidase involved in anaerobic
stress response [General function prediction only].
Length = 230
Score = 26.2 bits (58), Expect = 3.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 41 EARFKCMKWHIEIAKDKPSEVR 62
E R + M+ H IA++ +VR
Sbjct: 145 EERREMMREHGMIAREYAGKVR 166
>gnl|CDD|223005 PHA03176, PHA03176, UL43 envelope protein; Provisional.
Length = 420
Score = 26.0 bits (57), Expect = 4.7
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 13 CLVLGLCNILTIKAHLA 29
C+V+ +C++++I AHLA
Sbjct: 50 CIVVTVCSLVSIAAHLA 66
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 25.7 bits (57), Expect = 5.6
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 3/84 (3%)
Query: 20 NILTIKAHLASIKVPIPISDKEARFKC--MKWHI-EIAKDKPSEVRFSDNLAQILIDGAD 76
HL PI D K +I ++ D V SDN +
Sbjct: 598 EDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSV 657
Query: 77 NKGKVVKKKTDLHRQCEANRAYAH 100
G V+ + + Y
Sbjct: 658 RLGLVLLEWIKYAEFLRTRKGYLR 681
>gnl|CDD|221215 pfam11771, DUF3314, Protein of unknown function (DUF3314). This
small family contains human, mouse and fish members but
the function is not known.
Length = 162
Score = 25.3 bits (55), Expect = 6.4
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 13 CLVLGLCNILTIKAHLASIKVPIPI--SDKEARFKCMKWHIEIAKDKPSEVRFSD 65
+G +I + + P P S +KCM+W++E + SD
Sbjct: 20 HFAIGQFDIRGHEVSIFRYCAPTPYLASGFTGLYKCMRWNVEAPGEAAGAGEASD 74
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of
transcription [Cell division and chromosome partitioning
/ Transcription].
Length = 2005
Score = 25.4 bits (55), Expect = 8.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 20 NILTIKAHLASIKVPIPISDKEA 42
N+L IKA L + IP S K+
Sbjct: 1285 NLLIIKAQLVQLSKKIPYSSKKN 1307
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.139 0.443
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,095,587
Number of extensions: 411233
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 17
Length of query: 104
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 35
Effective length of database: 7,877,176
Effective search space: 275701160
Effective search space used: 275701160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)