RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4243
         (104 letters)



>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
           [TaxId: 274]}
          Length = 145

 Score = 74.9 bits (184), Expect = 3e-19
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 29  ASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGADNKGKVVKKKTDL 88
           A+ +VP+ +S +  +   ++W ++ A  +  E R +  +A  L+D A+ KG  VKKK D+
Sbjct: 72  ANYQVPMEVSPRRQQSLALRWLVQAANQR-PERRAAVRIAHELMDAAEGKGGAVKKKEDV 130

Query: 89  HRQCEANRAYAHYYF 103
            R  EANRAYAHY +
Sbjct: 131 ERMAEANRAYAHYRW 145


>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
           [TaxId: 562]}
          Length = 150

 Score = 69.1 bits (169), Expect = 5e-17
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)

Query: 17  GLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGAD 76
               + + +   ++ +VP+ +         M+W +E A+ +  +   +  LA  L D A+
Sbjct: 69  PTVEVKSRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARKR-GDKSMALRLANELSDAAE 127

Query: 77  NKGKVVKKKTDLHRQCEANRAYA 99
           NKG  VKK+ D+HR  EAN+A+A
Sbjct: 128 NKGTAVKKREDVHRMAEANKAFA 150


>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 139

 Score = 61.4 bits (149), Expect = 3e-14
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 17  GLCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKDKPSEVRFSDNLAQILIDGAD 76
            +  +   +   A+ +VP+ +         ++W ++ A+ + +E    + LA  ++D A+
Sbjct: 62  PVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLR-NEKTMEERLANEIMDAAN 120

Query: 77  NKGKVVKKKTDLHRQCEAN 95
           N G  VKK+ D H+  EAN
Sbjct: 121 NTGAAVKKREDTHKMAEAN 139


>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 201

 Score = 50.3 bits (120), Expect = 2e-09
 Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 18  LCNILTIKAHLASIKVPIPISDKEARFKCMKWHIEIAKD--KPSEVRFSDNLAQILIDGA 75
             +  ++        V + IS        ++     A      +++ F++ LA+ +I  A
Sbjct: 119 REDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAA 178

Query: 76  DN--KGKVVKKKTDLHRQCEANR 96
           +   K     KK ++ R  E++R
Sbjct: 179 NKDPKSYAYSKKLEIERIAESSR 201


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.139    0.443 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,975
Number of extensions: 15845
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 4
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)