BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4245
(328 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EOT|A Chain A, Crystal Structure Of The Mafa Homodimer Bound To The
Consensus Mare
pdb|4EOT|B Chain B, Crystal Structure Of The Mafa Homodimer Bound To The
Consensus Mare
Length = 95
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 68/89 (76%)
Query: 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTN 283
SDD L+ +SVRELN++L G+ ++++ +LK KRRTLKNRGYAQ+CR KR+ QR LE
Sbjct: 4 FSDDQLVSMSVRELNRQLRGFSKEEVIRLKQKRRTLKNRGYAQSCRFKRVQQRHILESEK 63
Query: 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYE 312
LQ Q++++K E+ ++ +ER+ YK++YE
Sbjct: 64 CQLQSQVEQLKLEVGRLAKERDLYKEKYE 92
>pdb|2WTY|A Chain A, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
pdb|2WTY|B Chain B, Crystal Structure Of The Homodimeric Mafb In Complex With
The T-Mare Binding Site
Length = 97
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 63/86 (73%)
Query: 223 LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVT 282
+ SDD L+ +SVRELN+ L G+ +D++ +LK KRRTLKNRGYAQ+CR KR+ Q+ LE
Sbjct: 1 MFSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENE 60
Query: 283 NKHLQQQLQKMKSEIKQIVEERNHYK 308
L QQ++++K E+ ++ ER+ YK
Sbjct: 61 KTQLIQQVEQLKQEVSRLARERDAYK 86
>pdb|2WT7|B Chain B, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 90
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHL 286
D L+ +SVRELN+ L G+ +D++ +LK KRRTLKNRGYAQ+CR KR+ Q+ LE L
Sbjct: 1 DQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQL 60
Query: 287 QQQLQKMKSEIKQIVEERNHYK 308
QQ++++K E+ ++ ER+ YK
Sbjct: 61 IQQVEQLKQEVSRLARERDAYK 82
>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
Length = 107
Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 61/89 (68%)
Query: 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTN 283
++D+ L+ SVRELN+ L G +++I +LK +RRTLKNRGYA +CR KR+ Q++ELE
Sbjct: 8 LTDEELVTXSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQK 67
Query: 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYE 312
LQQ+++K+ SE E + + +YE
Sbjct: 68 AELQQEVEKLASENASXKLELDALRSKYE 96
>pdb|1K1V|A Chain A, Solution Structure Of The Dna-Binding Domain Of Mafg
Length = 41
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 225 SDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRG 263
+D+ L+ +SVRELN+ L G +++I +LK +RRTLKNRG
Sbjct: 2 TDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRG 40
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 163 FRQEEVPLDMRRHCAADWSLVDEHGGKYLHDEP 195
+ E + +D+RR CA L+D G LHDEP
Sbjct: 165 IKDENILIDLRRGCA---KLIDFGSGALLHDEP 194
>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|B Chain B, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|C Chain C, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control.
pdb|2C4M|D Chain D, Starch Phosphorylase: Structural Studies Explain Oxyanion-
Dependent Kinetic Stability And Regulatory Control
Length = 796
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 149 QTYHDMFMPPHPNPFRQEEVPLDMRR 174
Q++++ F P+P+R+EE P +RR
Sbjct: 148 QSFNEGFQVEKPDPWREEEYPFTIRR 173
>pdb|2KZ5|A Chain A, Solution Nmr Structure Of Transcription Factor Nf-E2
Subunit's Dna Binding Domain From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4653b
Length = 91
Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 227 DLLMCLSVRELNKKLHGYP--RDQIAKLKAKRRTLKNRGYAQNCRSKRL 273
D ++ L V + N+ L YP Q+A ++ RR KN+ AQN R ++L
Sbjct: 38 DKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKL 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,900,441
Number of Sequences: 62578
Number of extensions: 319501
Number of successful extensions: 1029
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 30
length of query: 328
length of database: 14,973,337
effective HSP length: 99
effective length of query: 229
effective length of database: 8,778,115
effective search space: 2010188335
effective search space used: 2010188335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)