Query psy4245
Match_columns 328
No_of_seqs 111 out of 158
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 20:30:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4196|consensus 100.0 1.7E-38 3.6E-43 271.8 14.2 98 222-319 22-119 (135)
2 PF03131 bZIP_Maf: bZIP Maf tr 100.0 5.8E-31 1.2E-35 209.9 -5.0 92 224-315 1-92 (92)
3 KOG3863|consensus 99.9 7.5E-24 1.6E-28 215.6 8.8 109 212-320 447-557 (604)
4 smart00338 BRLZ basic region l 99.2 1.3E-10 2.7E-15 87.1 8.9 62 251-312 3-64 (65)
5 PF00170 bZIP_1: bZIP transcri 98.9 5.4E-09 1.2E-13 78.2 8.5 61 251-311 3-63 (64)
6 KOG4005|consensus 98.7 2.7E-07 5.8E-12 87.6 12.2 64 235-302 55-118 (292)
7 KOG0709|consensus 98.6 7.5E-07 1.6E-11 90.1 13.8 116 192-309 182-314 (472)
8 PF07716 bZIP_2: Basic region 98.6 3.1E-07 6.8E-12 67.2 7.7 49 254-303 6-54 (54)
9 KOG0837|consensus 98.4 1.7E-06 3.7E-11 82.6 8.9 83 236-318 189-271 (279)
10 KOG4343|consensus 97.5 0.00029 6.3E-09 73.2 7.9 62 248-316 276-337 (655)
11 KOG4571|consensus 97.5 0.00057 1.2E-08 66.3 9.2 62 255-316 229-290 (294)
12 KOG3584|consensus 97.3 0.00052 1.1E-08 67.1 6.2 50 252-301 290-339 (348)
13 KOG3119|consensus 95.9 0.032 7E-07 52.9 8.2 74 245-318 186-259 (269)
14 PF09789 DUF2353: Uncharacteri 94.6 0.16 3.5E-06 50.1 8.5 50 268-317 127-176 (319)
15 PF06005 DUF904: Protein of un 93.5 0.37 8.1E-06 38.1 7.1 43 275-317 26-68 (72)
16 PF04977 DivIC: Septum formati 93.3 0.49 1.1E-05 35.5 7.1 53 275-327 18-75 (80)
17 PF14662 CCDC155: Coiled-coil 92.0 2 4.2E-05 40.2 10.5 43 274-316 88-130 (193)
18 PRK10884 SH3 domain-containing 91.6 2.1 4.5E-05 39.7 10.3 34 276-309 134-167 (206)
19 TIGR02894 DNA_bind_RsfA transc 91.6 1.3 2.8E-05 40.4 8.7 44 274-317 104-147 (161)
20 PF05266 DUF724: Protein of un 91.6 1.8 3.8E-05 39.7 9.7 43 274-316 131-173 (190)
21 PRK00888 ftsB cell division pr 91.0 0.9 2E-05 37.9 6.7 53 275-327 28-85 (105)
22 PF02403 Seryl_tRNA_N: Seryl-t 91.0 2.9 6.2E-05 33.8 9.5 74 244-317 26-103 (108)
23 PF05377 FlaC_arch: Flagella a 89.6 1.6 3.6E-05 33.4 6.5 40 276-315 2-41 (55)
24 PRK11637 AmiB activator; Provi 89.6 3.8 8.1E-05 40.7 10.8 19 246-264 46-64 (428)
25 PF03962 Mnd1: Mnd1 family; I 89.4 3.7 8.1E-05 37.3 9.8 48 228-275 26-90 (188)
26 PRK15422 septal ring assembly 89.3 1.7 3.6E-05 35.6 6.7 32 286-317 44-75 (79)
27 PF02344 Myc-LZ: Myc leucine z 89.1 1.1 2.3E-05 31.2 4.7 30 289-318 2-31 (32)
28 PRK10884 SH3 domain-containing 88.5 5.1 0.00011 37.2 10.2 68 247-317 100-168 (206)
29 PF10186 Atg14: UV radiation r 88.5 5.6 0.00012 36.2 10.4 67 247-313 27-102 (302)
30 PRK14127 cell division protein 88.1 4.3 9.4E-05 34.7 8.7 28 222-252 4-31 (109)
31 PF05529 Bap31: B-cell recepto 87.6 3.5 7.5E-05 36.6 8.3 39 279-317 152-190 (192)
32 PF02403 Seryl_tRNA_N: Seryl-t 87.1 2.2 4.8E-05 34.4 6.3 46 264-309 14-64 (108)
33 PF08537 NBP1: Fungal Nap bind 87.1 3 6.5E-05 41.6 8.2 54 220-276 88-145 (323)
34 PF10226 DUF2216: Uncharacteri 86.8 3.7 8E-05 38.5 8.2 67 223-294 7-75 (195)
35 PRK11637 AmiB activator; Provi 86.2 8.1 0.00017 38.4 10.8 40 276-315 91-130 (428)
36 PF04102 SlyX: SlyX; InterPro 86.1 4.7 0.0001 31.2 7.3 43 275-317 5-47 (69)
37 KOG1414|consensus 85.7 0.061 1.3E-06 53.4 -4.1 57 251-307 152-212 (395)
38 PF06156 DUF972: Protein of un 85.7 3.3 7.3E-05 35.0 6.8 43 274-316 15-57 (107)
39 PF07200 Mod_r: Modifier of ru 85.6 12 0.00027 31.8 10.3 75 230-314 2-88 (150)
40 KOG4005|consensus 85.4 12 0.00026 36.7 11.1 44 274-317 97-140 (292)
41 PF05266 DUF724: Protein of un 85.2 6.3 0.00014 36.2 8.8 57 252-308 88-151 (190)
42 PRK03918 chromosome segregatio 85.1 7.6 0.00016 41.2 10.6 29 234-262 572-600 (880)
43 TIGR02449 conserved hypothetic 85.1 4.9 0.00011 31.7 6.9 44 274-317 14-57 (65)
44 PF07888 CALCOCO1: Calcium bin 84.5 3.2 7E-05 43.9 7.4 17 218-234 108-124 (546)
45 PF13851 GAS: Growth-arrest sp 84.3 13 0.00027 34.2 10.4 43 276-318 95-137 (201)
46 PRK00295 hypothetical protein; 84.1 6 0.00013 30.8 7.0 41 276-316 7-47 (68)
47 smart00806 AIP3 Actin interact 84.1 19 0.0004 37.4 12.4 63 260-322 203-277 (426)
48 cd04776 HTH_GnyR Helix-Turn-He 83.7 5.9 0.00013 33.1 7.4 79 224-310 37-116 (118)
49 TIGR00414 serS seryl-tRNA synt 83.6 16 0.00035 36.8 11.7 72 246-317 29-105 (418)
50 PF04111 APG6: Autophagy prote 83.5 7.3 0.00016 37.9 9.0 83 233-315 44-126 (314)
51 PF07106 TBPIP: Tat binding pr 83.4 7.4 0.00016 34.0 8.1 23 294-316 115-137 (169)
52 PF10224 DUF2205: Predicted co 83.4 7.8 0.00017 31.5 7.7 48 270-317 19-66 (80)
53 PRK00736 hypothetical protein; 83.3 6.6 0.00014 30.6 7.0 41 276-316 7-47 (68)
54 PF13870 DUF4201: Domain of un 83.0 24 0.00053 31.0 11.3 85 231-319 48-136 (177)
55 KOG1103|consensus 82.7 4.5 9.7E-05 41.7 7.4 101 226-326 183-290 (561)
56 PF15290 Syntaphilin: Golgi-lo 82.7 20 0.00043 35.7 11.5 39 280-318 88-140 (305)
57 COG3074 Uncharacterized protei 82.5 2.9 6.2E-05 34.1 4.8 32 285-316 43-74 (79)
58 PF12128 DUF3584: Protein of u 82.5 16 0.00034 41.4 12.2 91 233-326 450-542 (1201)
59 PRK13169 DNA replication intia 82.4 5.3 0.00012 34.1 6.7 41 274-314 15-55 (110)
60 PF02183 HALZ: Homeobox associ 82.2 5.6 0.00012 29.0 5.8 40 278-317 2-41 (45)
61 PRK10722 hypothetical protein; 81.9 6.2 0.00014 38.2 7.6 71 236-315 127-203 (247)
62 PRK04406 hypothetical protein; 81.7 7.9 0.00017 30.8 7.0 42 275-316 12-53 (75)
63 PLN02678 seryl-tRNA synthetase 81.7 3.7 8E-05 42.2 6.5 72 246-317 32-107 (448)
64 PF11932 DUF3450: Protein of u 81.5 13 0.00028 34.5 9.4 58 245-308 40-97 (251)
65 PRK02119 hypothetical protein; 81.3 8.5 0.00018 30.4 7.0 42 275-316 10-51 (73)
66 PF07989 Microtub_assoc: Micro 81.1 16 0.00035 29.1 8.6 65 247-311 7-73 (75)
67 PF08317 Spc7: Spc7 kinetochor 81.1 12 0.00026 36.3 9.4 49 225-274 163-212 (325)
68 PRK04325 hypothetical protein; 81.0 8.8 0.00019 30.3 7.0 40 276-315 11-50 (74)
69 PTZ00096 40S ribosomal protein 80.7 2.6 5.5E-05 37.8 4.3 36 223-258 19-63 (143)
70 PF11559 ADIP: Afadin- and alp 80.5 23 0.00049 30.3 10.0 10 223-232 30-39 (151)
71 PF04012 PspA_IM30: PspA/IM30 80.5 31 0.00067 31.0 11.3 35 228-263 26-60 (221)
72 PRK09039 hypothetical protein; 80.5 9.6 0.00021 37.5 8.6 20 286-305 142-161 (343)
73 PF04977 DivIC: Septum formati 80.4 5.2 0.00011 29.9 5.4 27 274-300 24-50 (80)
74 PF09726 Macoilin: Transmembra 80.0 10 0.00022 41.0 9.4 37 267-307 542-578 (697)
75 PF11932 DUF3450: Protein of u 80.0 20 0.00043 33.3 10.1 42 274-315 49-90 (251)
76 PRK13182 racA polar chromosome 79.8 12 0.00027 34.0 8.5 93 223-319 37-142 (175)
77 PF10211 Ax_dynein_light: Axon 79.7 23 0.00051 32.2 10.3 33 226-258 60-92 (189)
78 PF10805 DUF2730: Protein of u 79.7 8.5 0.00018 32.0 6.9 60 244-316 32-93 (106)
79 PRK10698 phage shock protein P 79.6 25 0.00054 32.7 10.6 40 228-268 27-66 (222)
80 PF00170 bZIP_1: bZIP transcri 79.3 8.6 0.00019 28.7 6.2 36 281-316 26-61 (64)
81 PRK02793 phi X174 lysis protei 79.1 11 0.00024 29.6 7.0 41 275-315 9-49 (72)
82 TIGR03185 DNA_S_dndD DNA sulfu 78.7 9.8 0.00021 39.9 8.6 46 272-317 207-252 (650)
83 PF07106 TBPIP: Tat binding pr 78.6 20 0.00042 31.3 9.1 87 223-315 68-158 (169)
84 PRK05431 seryl-tRNA synthetase 78.2 17 0.00036 36.8 9.7 73 245-317 26-102 (425)
85 PRK09413 IS2 repressor TnpA; R 77.3 6.7 0.00014 32.7 5.6 78 232-317 30-107 (121)
86 COG3074 Uncharacterized protei 77.2 11 0.00023 30.8 6.5 31 286-316 23-53 (79)
87 PF00038 Filament: Intermediat 77.2 31 0.00068 32.3 10.6 71 246-316 215-290 (312)
88 cd00632 Prefoldin_beta Prefold 77.2 11 0.00024 30.7 6.8 68 247-315 37-104 (105)
89 PF06156 DUF972: Protein of un 77.1 12 0.00025 31.8 7.0 46 274-319 8-53 (107)
90 PF04111 APG6: Autophagy prote 77.0 12 0.00027 36.4 8.2 43 273-315 63-105 (314)
91 KOG0898|consensus 76.5 3 6.5E-05 37.6 3.5 38 223-260 26-72 (152)
92 PF09738 DUF2051: Double stran 76.4 69 0.0015 31.7 13.1 40 276-315 121-160 (302)
93 PF09730 BicD: Microtubule-ass 76.3 20 0.00043 39.3 10.2 69 248-316 70-149 (717)
94 PRK13922 rod shape-determining 76.3 8.4 0.00018 35.9 6.6 40 270-309 65-107 (276)
95 COG2433 Uncharacterized conser 76.3 16 0.00034 39.7 9.2 42 274-315 467-508 (652)
96 cd04770 HTH_HMRTR Helix-Turn-H 75.8 23 0.00051 29.1 8.4 14 242-255 56-69 (123)
97 PLN02678 seryl-tRNA synthetase 75.5 20 0.00044 36.9 9.6 48 254-305 17-64 (448)
98 cd04765 HTH_MlrA-like_sg2 Heli 75.5 4.1 8.9E-05 33.2 3.8 22 244-265 39-60 (99)
99 TIGR01554 major_cap_HK97 phage 75.4 18 0.00039 35.2 8.8 36 272-307 25-60 (378)
100 PF04156 IncA: IncA protein; 75.4 46 0.001 29.1 10.6 42 274-315 144-185 (191)
101 PF00038 Filament: Intermediat 75.3 44 0.00096 31.3 11.1 20 248-267 231-250 (312)
102 PF15619 Lebercilin: Ciliary p 75.1 40 0.00088 31.0 10.5 71 246-316 67-146 (194)
103 COG0172 SerS Seryl-tRNA synthe 74.8 33 0.00071 35.5 10.8 92 226-317 3-104 (429)
104 cd04779 HTH_MerR-like_sg4 Heli 74.5 15 0.00033 31.8 7.2 32 224-257 38-70 (134)
105 cd01111 HTH_MerD Helix-Turn-He 74.5 15 0.00032 30.4 6.9 26 289-314 81-106 (107)
106 KOG3650|consensus 74.3 13 0.00028 32.3 6.6 49 273-321 62-112 (120)
107 PLN02320 seryl-tRNA synthetase 74.3 40 0.00087 35.5 11.5 85 233-317 75-166 (502)
108 COG2433 Uncharacterized conser 74.1 9.8 0.00021 41.1 7.1 39 278-316 426-464 (652)
109 TIGR02231 conserved hypothetic 74.1 33 0.00072 35.0 10.7 36 281-316 138-173 (525)
110 PF08172 CASP_C: CASP C termin 73.8 11 0.00024 35.9 6.8 57 249-318 81-137 (248)
111 COG1579 Zn-ribbon protein, pos 73.5 22 0.00047 34.2 8.7 43 273-315 88-130 (239)
112 PF13747 DUF4164: Domain of un 73.3 38 0.00083 27.6 8.9 53 254-306 12-64 (89)
113 PF13747 DUF4164: Domain of un 73.2 16 0.00034 29.9 6.6 33 283-315 34-66 (89)
114 PRK13923 putative spore coat p 72.7 11 0.00025 34.5 6.3 77 238-316 53-146 (170)
115 PRK05431 seryl-tRNA synthetase 72.7 7.5 0.00016 39.2 5.7 48 254-306 13-60 (425)
116 PF12325 TMF_TATA_bd: TATA ele 72.2 18 0.00039 31.2 7.1 74 243-316 12-89 (120)
117 PF13815 Dzip-like_N: Iguana/D 71.9 22 0.00049 29.7 7.5 44 267-310 73-116 (118)
118 TIGR00219 mreC rod shape-deter 71.8 12 0.00026 35.9 6.6 37 273-309 65-105 (283)
119 COG4942 Membrane-bound metallo 71.8 17 0.00037 37.6 7.9 43 274-316 59-101 (420)
120 cd04786 HTH_MerR-like_sg7 Heli 71.6 23 0.0005 30.3 7.6 30 286-315 83-112 (131)
121 PRK13169 DNA replication intia 71.5 19 0.00042 30.8 7.0 10 310-319 74-83 (110)
122 PLN02320 seryl-tRNA synthetase 71.2 12 0.00026 39.3 6.9 48 253-305 77-124 (502)
123 PF01920 Prefoldin_2: Prefoldi 71.0 12 0.00025 29.4 5.3 42 273-314 61-102 (106)
124 PRK00888 ftsB cell division pr 70.8 11 0.00025 31.4 5.5 32 274-305 34-65 (105)
125 PRK00846 hypothetical protein; 70.7 26 0.00057 28.4 7.3 43 280-322 26-68 (77)
126 PF04880 NUDE_C: NUDE protein, 70.6 2.3 5E-05 38.7 1.4 30 282-312 25-54 (166)
127 PF13166 AAA_13: AAA domain 70.3 37 0.00079 35.4 10.1 29 234-263 372-400 (712)
128 PF08286 Spc24: Spc24 subunit 70.3 1.4 3.1E-05 36.8 0.0 41 277-317 2-42 (118)
129 PF07798 DUF1640: Protein of u 70.3 79 0.0017 28.1 11.4 11 242-252 14-24 (177)
130 PF15188 CCDC-167: Coiled-coil 70.2 18 0.00039 29.9 6.3 58 248-305 6-67 (85)
131 COG5509 Uncharacterized small 70.1 5.1 0.00011 31.7 3.0 51 221-272 14-64 (65)
132 PRK00846 hypothetical protein; 70.0 25 0.00054 28.5 7.0 44 274-317 13-56 (77)
133 KOG0930|consensus 70.0 10 0.00022 38.2 5.8 17 242-258 9-25 (395)
134 smart00338 BRLZ basic region l 70.0 19 0.00042 26.8 6.0 27 276-302 35-61 (65)
135 PRK13729 conjugal transfer pil 69.9 23 0.00049 37.2 8.5 37 281-317 90-126 (475)
136 PRK09343 prefoldin subunit bet 69.9 26 0.00056 29.7 7.5 53 271-323 68-120 (121)
137 KOG1319|consensus 69.5 1.1E+02 0.0023 29.4 12.3 82 223-317 49-151 (229)
138 PF07334 IFP_35_N: Interferon- 69.5 9 0.00019 31.2 4.4 28 276-303 2-29 (76)
139 cd01109 HTH_YyaN Helix-Turn-He 69.4 38 0.00082 27.7 8.1 31 224-256 39-70 (113)
140 PF03962 Mnd1: Mnd1 family; I 69.3 61 0.0013 29.5 10.2 66 248-313 77-153 (188)
141 PF14257 DUF4349: Domain of un 69.1 19 0.00041 33.4 7.1 34 269-302 157-190 (262)
142 KOG4687|consensus 69.1 11 0.00023 37.9 5.6 50 270-319 156-205 (389)
143 cd01106 HTH_TipAL-Mta Helix-Tu 68.9 21 0.00045 28.7 6.4 12 242-253 56-67 (103)
144 COG1382 GimC Prefoldin, chaper 68.8 30 0.00065 30.2 7.7 50 271-320 67-116 (119)
145 PF10211 Ax_dynein_light: Axon 68.8 36 0.00078 31.0 8.6 31 277-307 123-153 (189)
146 cd00890 Prefoldin Prefoldin is 68.8 21 0.00044 29.0 6.5 43 273-315 86-128 (129)
147 PRK00295 hypothetical protein; 68.8 36 0.00078 26.5 7.5 41 276-316 14-54 (68)
148 PF07200 Mod_r: Modifier of ru 68.8 63 0.0014 27.4 9.7 74 241-316 1-83 (150)
149 PF13815 Dzip-like_N: Iguana/D 68.7 25 0.00055 29.4 7.1 44 274-317 73-116 (118)
150 cd04775 HTH_Cfa-like Helix-Tur 68.4 21 0.00045 29.0 6.4 11 242-252 56-66 (102)
151 COG2919 Septum formation initi 68.3 24 0.00053 29.7 7.0 46 263-310 48-93 (117)
152 PRK10803 tol-pal system protei 67.8 24 0.00051 33.5 7.6 44 273-316 60-103 (263)
153 PRK02224 chromosome segregatio 67.8 47 0.001 35.6 10.5 26 248-273 614-639 (880)
154 PF03961 DUF342: Protein of un 67.8 24 0.00051 35.5 7.9 30 285-314 379-408 (451)
155 COG4026 Uncharacterized protei 67.6 44 0.00095 32.8 9.3 43 274-316 156-198 (290)
156 cd04776 HTH_GnyR Helix-Turn-He 67.5 25 0.00054 29.4 6.8 71 242-313 35-112 (118)
157 TIGR03185 DNA_S_dndD DNA sulfu 67.4 62 0.0013 34.1 11.2 39 275-313 422-460 (650)
158 cd04785 HTH_CadR-PbrR-like Hel 67.1 41 0.00089 28.2 8.1 14 242-255 56-69 (126)
159 TIGR02047 CadR-PbrR Cd(II)/Pb( 67.0 40 0.00086 28.4 8.0 13 242-254 56-68 (127)
160 COG1340 Uncharacterized archae 67.0 64 0.0014 32.1 10.5 73 244-316 17-90 (294)
161 PF08614 ATG16: Autophagy prot 67.0 39 0.00085 30.3 8.4 38 277-314 133-170 (194)
162 cd04766 HTH_HspR Helix-Turn-He 66.6 15 0.00032 29.0 5.1 50 244-297 39-88 (91)
163 PF10805 DUF2730: Protein of u 66.5 67 0.0014 26.7 9.1 54 264-317 31-87 (106)
164 PF04728 LPP: Lipoprotein leuc 66.4 33 0.00071 26.6 6.6 34 279-312 15-48 (56)
165 TIGR00414 serS seryl-tRNA synt 66.1 15 0.00033 37.0 6.2 51 254-307 13-63 (418)
166 PF14584 DUF4446: Protein of u 66.0 31 0.00067 30.7 7.5 39 278-316 43-81 (151)
167 PLN03217 transcription factor 66.0 31 0.00067 29.1 6.9 39 223-276 16-54 (93)
168 PF08172 CASP_C: CASP C termin 65.8 30 0.00065 33.1 7.8 20 281-300 107-126 (248)
169 cd04781 HTH_MerR-like_sg6 Heli 65.7 21 0.00047 29.5 6.1 27 224-253 38-66 (120)
170 cd04787 HTH_HMRTR_unk Helix-Tu 65.6 56 0.0012 27.6 8.7 77 224-318 39-116 (133)
171 PRK04325 hypothetical protein; 65.5 29 0.00064 27.4 6.5 43 276-318 18-60 (74)
172 PRK14139 heat shock protein Gr 65.5 20 0.00043 33.1 6.4 40 274-313 32-71 (185)
173 KOG4460|consensus 65.4 50 0.0011 36.0 9.9 58 262-319 588-647 (741)
174 PF05600 DUF773: Protein of un 65.3 53 0.0012 34.4 10.1 94 225-319 398-498 (507)
175 cd07592 BAR_Endophilin_A The B 65.3 24 0.00051 33.2 6.9 50 226-275 104-153 (223)
176 PF08317 Spc7: Spc7 kinetochor 65.3 54 0.0012 31.8 9.6 14 303-316 277-290 (325)
177 PF13942 Lipoprotein_20: YfhG 65.2 23 0.00049 33.0 6.6 44 263-315 114-157 (179)
178 PF07888 CALCOCO1: Calcium bin 64.7 24 0.00051 37.7 7.5 20 247-266 150-169 (546)
179 PF05615 THOC7: Tho complex su 64.6 58 0.0013 27.6 8.6 58 259-317 63-123 (139)
180 PF04568 IATP: Mitochondrial A 64.4 37 0.0008 28.7 7.2 46 259-304 54-99 (100)
181 TIGR02209 ftsL_broad cell divi 64.4 19 0.00042 27.6 5.3 39 278-316 28-68 (85)
182 KOG3119|consensus 64.4 26 0.00056 33.6 7.1 35 273-307 221-255 (269)
183 TIGR02977 phageshock_pspA phag 64.4 1E+02 0.0022 28.2 10.8 34 229-263 28-61 (219)
184 TIGR02044 CueR Cu(I)-responsiv 64.4 49 0.0011 27.7 8.0 13 242-254 56-68 (127)
185 PF14662 CCDC155: Coiled-coil 64.2 58 0.0013 30.7 9.1 66 246-311 66-139 (193)
186 PF03961 DUF342: Protein of un 64.2 22 0.00048 35.7 7.0 33 286-318 373-405 (451)
187 TIGR02894 DNA_bind_RsfA transc 64.1 1E+02 0.0022 28.4 10.4 39 277-315 100-138 (161)
188 PF12325 TMF_TATA_bd: TATA ele 64.1 96 0.0021 26.8 10.9 18 246-263 36-53 (120)
189 PRK02224 chromosome segregatio 64.0 65 0.0014 34.6 10.7 42 274-315 251-292 (880)
190 PF07544 Med9: RNA polymerase 63.9 9.5 0.00021 30.5 3.5 45 267-312 39-83 (83)
191 PF15066 CAGE1: Cancer-associa 63.7 54 0.0012 34.8 9.7 17 301-317 509-525 (527)
192 PF10168 Nup88: Nuclear pore c 63.7 49 0.0011 36.1 9.8 91 228-318 528-623 (717)
193 KOG1962|consensus 63.7 56 0.0012 31.2 9.1 47 274-320 165-211 (216)
194 TIGR03752 conj_TIGR03752 integ 63.4 52 0.0011 34.7 9.6 40 277-316 105-144 (472)
195 PF09766 FimP: Fms-interacting 63.3 26 0.00055 34.8 7.1 83 225-317 58-151 (355)
196 cd07600 BAR_Gvp36 The Bin/Amph 63.3 44 0.00096 31.8 8.4 49 228-276 125-173 (242)
197 PRK13182 racA polar chromosome 62.8 1.1E+02 0.0024 27.9 10.5 63 246-321 84-151 (175)
198 PRK14162 heat shock protein Gr 62.7 24 0.00053 32.7 6.4 37 276-312 41-77 (194)
199 COG4467 Regulator of replicati 62.7 31 0.00068 30.1 6.6 47 273-319 7-53 (114)
200 cd01107 HTH_BmrR Helix-Turn-He 62.6 40 0.00087 27.5 7.0 28 285-312 79-106 (108)
201 PRK10803 tol-pal system protei 62.6 27 0.00059 33.1 6.9 46 275-320 55-100 (263)
202 PF04728 LPP: Lipoprotein leuc 62.5 67 0.0014 24.9 7.7 34 276-309 5-38 (56)
203 cd04772 HTH_TioE_rpt1 First He 62.3 28 0.0006 28.2 6.0 17 286-302 81-97 (99)
204 KOG4571|consensus 61.8 55 0.0012 32.6 9.0 65 225-306 223-287 (294)
205 KOG2264|consensus 61.7 24 0.00052 38.6 6.9 42 275-316 108-149 (907)
206 PF10883 DUF2681: Protein of u 61.7 28 0.00061 28.9 5.9 29 281-309 30-58 (87)
207 TIGR02449 conserved hypothetic 61.7 49 0.0011 26.1 7.0 40 277-316 10-49 (65)
208 COG4942 Membrane-bound metallo 61.6 75 0.0016 33.1 10.2 66 251-316 39-108 (420)
209 PTZ00454 26S protease regulato 61.5 25 0.00054 35.3 6.8 40 278-317 26-65 (398)
210 PRK03947 prefoldin subunit alp 61.5 39 0.00085 28.5 7.0 44 273-316 93-136 (140)
211 PF01706 FliG_C: FliG C-termin 61.3 38 0.00083 27.7 6.7 82 223-304 19-101 (110)
212 PF10153 DUF2361: Uncharacteri 61.3 40 0.00087 29.1 7.0 14 234-247 6-21 (114)
213 PRK14154 heat shock protein Gr 61.3 24 0.00051 33.2 6.1 14 248-261 60-73 (208)
214 PRK13922 rod shape-determining 61.0 55 0.0012 30.5 8.5 48 270-317 58-108 (276)
215 PF04420 CHD5: CHD5-like prote 60.9 21 0.00046 31.5 5.5 32 286-317 71-102 (161)
216 KOG4657|consensus 60.8 80 0.0017 30.8 9.6 43 270-312 82-124 (246)
217 PRK03947 prefoldin subunit alp 60.7 40 0.00087 28.5 7.0 47 273-319 5-51 (140)
218 PF09766 FimP: Fms-interacting 60.5 42 0.00091 33.3 8.0 56 262-317 85-144 (355)
219 cd04790 HTH_Cfa-like_unk Helix 60.4 43 0.00092 29.9 7.3 13 242-254 57-69 (172)
220 PRK14143 heat shock protein Gr 60.3 28 0.00061 33.2 6.5 16 247-262 74-89 (238)
221 cd01282 HTH_MerR-like_sg3 Heli 60.2 46 0.001 27.4 7.1 14 242-255 55-68 (112)
222 PRK13729 conjugal transfer pil 60.0 39 0.00084 35.6 8.0 30 281-310 97-126 (475)
223 KOG2077|consensus 59.8 41 0.00088 36.8 8.2 23 295-317 399-421 (832)
224 PF06818 Fez1: Fez1; InterPro 59.8 68 0.0015 30.3 8.8 75 235-314 24-106 (202)
225 PF13600 DUF4140: N-terminal d 59.7 25 0.00054 28.2 5.3 33 282-314 71-103 (104)
226 PF11853 DUF3373: Protein of u 59.7 8.3 0.00018 40.4 3.2 28 289-316 32-59 (489)
227 PRK09514 zntR zinc-responsive 59.6 51 0.0011 28.3 7.5 13 242-254 57-69 (140)
228 PF13094 CENP-Q: CENP-Q, a CEN 59.4 26 0.00057 30.4 5.8 39 274-312 41-79 (160)
229 PTZ00454 26S protease regulato 59.3 35 0.00076 34.3 7.4 36 274-309 29-64 (398)
230 PF04999 FtsL: Cell division p 59.2 27 0.00059 27.7 5.4 41 276-316 37-79 (97)
231 cd07613 BAR_Endophilin_A1 The 59.2 44 0.00095 31.7 7.6 49 227-275 105-153 (223)
232 COG3883 Uncharacterized protei 59.2 50 0.0011 32.3 8.1 55 259-313 44-98 (265)
233 PF11365 DUF3166: Protein of u 59.1 23 0.00051 29.8 5.2 42 274-315 8-49 (96)
234 PF10473 CENP-F_leu_zip: Leuci 59.1 95 0.0021 27.6 9.2 40 277-316 62-101 (140)
235 PF09744 Jnk-SapK_ap_N: JNK_SA 59.0 76 0.0017 28.6 8.7 24 278-301 86-109 (158)
236 PRK14148 heat shock protein Gr 58.8 33 0.00071 31.9 6.5 35 277-311 43-77 (195)
237 PF02996 Prefoldin: Prefoldin 58.7 41 0.0009 27.1 6.5 40 276-315 79-118 (120)
238 cd07594 BAR_Endophilin_B The B 58.6 53 0.0012 31.1 8.0 65 226-290 109-179 (229)
239 TIGR02043 ZntR Zn(II)-responsi 58.5 65 0.0014 27.3 7.8 14 242-255 57-70 (131)
240 PF05278 PEARLI-4: Arabidopsis 58.3 1.1E+02 0.0023 30.2 10.2 10 116-125 16-25 (269)
241 PRK11020 hypothetical protein; 58.3 72 0.0016 28.1 8.1 61 246-307 4-65 (118)
242 KOG3863|consensus 58.1 19 0.00042 38.7 5.6 83 231-317 458-547 (604)
243 PF02994 Transposase_22: L1 tr 57.9 35 0.00076 34.0 7.0 43 275-317 145-187 (370)
244 PHA02562 46 endonuclease subun 57.9 57 0.0012 32.8 8.6 31 278-308 362-392 (562)
245 PF10473 CENP-F_leu_zip: Leuci 57.8 70 0.0015 28.5 8.2 41 275-315 53-93 (140)
246 TIGR01843 type_I_hlyD type I s 57.7 90 0.002 29.7 9.5 33 279-311 149-181 (423)
247 KOG0612|consensus 57.6 79 0.0017 37.1 10.3 60 248-307 473-534 (1317)
248 KOG0999|consensus 57.6 51 0.0011 36.0 8.4 64 252-315 147-221 (772)
249 PF04859 DUF641: Plant protein 57.6 35 0.00076 30.1 6.2 69 248-316 53-122 (131)
250 PRK14155 heat shock protein Gr 57.6 22 0.00047 33.4 5.2 36 277-312 16-51 (208)
251 PF07795 DUF1635: Protein of u 57.5 52 0.0011 31.4 7.7 28 288-315 33-60 (214)
252 PF01166 TSC22: TSC-22/dip/bun 57.4 17 0.00037 28.5 3.7 31 281-311 14-44 (59)
253 KOG0243|consensus 57.4 42 0.00091 38.4 8.2 45 271-315 445-496 (1041)
254 TIGR01025 rpsS_arch ribosomal 57.3 16 0.00035 32.5 4.1 35 223-257 9-52 (135)
255 cd01108 HTH_CueR Helix-Turn-He 57.3 83 0.0018 26.4 8.2 13 242-254 56-68 (127)
256 cd04783 HTH_MerR1 Helix-Turn-H 57.2 54 0.0012 27.3 7.1 13 242-254 56-68 (126)
257 TIGR02338 gimC_beta prefoldin, 57.1 57 0.0012 26.9 7.1 73 243-316 37-109 (110)
258 PRK02119 hypothetical protein; 57.1 67 0.0015 25.4 7.2 49 269-317 10-59 (73)
259 PF03915 AIP3: Actin interacti 57.0 42 0.00091 34.6 7.6 58 261-318 200-269 (424)
260 PRK09413 IS2 repressor TnpA; R 56.9 36 0.00078 28.3 5.9 31 277-307 74-104 (121)
261 PRK14158 heat shock protein Gr 56.7 37 0.00081 31.5 6.5 37 276-312 42-78 (194)
262 PF09789 DUF2353: Uncharacteri 56.6 37 0.0008 34.0 6.9 68 246-313 153-228 (319)
263 PF07407 Seadorna_VP6: Seadorn 56.6 41 0.00089 34.5 7.3 23 238-260 23-45 (420)
264 PRK04406 hypothetical protein; 56.6 60 0.0013 25.9 6.9 50 268-317 11-61 (75)
265 cd07615 BAR_Endophilin_A3 The 56.6 48 0.001 31.4 7.4 49 227-275 105-153 (223)
266 PF11414 Suppressor_APC: Adeno 56.3 38 0.00081 27.8 5.8 36 274-316 7-42 (84)
267 PF05983 Med7: MED7 protein; 56.2 90 0.0019 27.9 8.7 61 248-312 102-162 (162)
268 PF08614 ATG16: Autophagy prot 56.0 86 0.0019 28.2 8.6 62 247-314 116-177 (194)
269 PF02183 HALZ: Homeobox associ 56.0 40 0.00088 24.6 5.3 35 278-312 9-43 (45)
270 PRK15422 septal ring assembly 56.0 55 0.0012 27.0 6.6 21 286-306 23-43 (79)
271 PF10212 TTKRSYEDQ: Predicted 56.0 95 0.0021 33.2 10.0 65 248-313 421-487 (518)
272 PF06216 RTBV_P46: Rice tungro 55.8 44 0.00095 33.4 7.2 35 282-316 79-113 (389)
273 PF08581 Tup_N: Tup N-terminal 55.6 82 0.0018 25.5 7.6 39 275-313 26-64 (79)
274 KOG0995|consensus 55.5 91 0.002 33.7 9.9 28 292-319 336-363 (581)
275 KOG0250|consensus 55.4 64 0.0014 37.1 9.2 7 156-162 179-185 (1074)
276 PHA01750 hypothetical protein 55.3 68 0.0015 26.1 6.9 40 279-318 32-72 (75)
277 PRK01203 prefoldin subunit alp 55.3 50 0.0011 29.1 6.8 41 277-317 3-43 (130)
278 KOG4603|consensus 55.0 81 0.0018 29.8 8.4 79 220-315 63-143 (201)
279 PF14197 Cep57_CLD_2: Centroso 55.0 63 0.0014 25.4 6.7 39 279-317 24-62 (69)
280 TIGR01005 eps_transp_fam exopo 54.6 95 0.0021 33.0 10.0 24 294-317 375-398 (754)
281 PF14931 IFT20: Intraflagellar 54.3 1.4E+02 0.003 25.9 9.2 33 269-301 75-107 (120)
282 PRK14147 heat shock protein Gr 54.1 33 0.00072 31.1 5.7 33 279-311 23-55 (172)
283 cd04789 HTH_Cfa Helix-Turn-Hel 54.1 55 0.0012 26.6 6.5 10 242-251 56-65 (102)
284 COG1842 PspA Phage shock prote 54.0 52 0.0011 31.1 7.2 44 273-316 91-134 (225)
285 PF07407 Seadorna_VP6: Seadorn 53.8 20 0.00043 36.7 4.6 31 273-303 31-61 (420)
286 smart00787 Spc7 Spc7 kinetocho 53.7 1E+02 0.0022 30.4 9.3 36 274-309 225-260 (312)
287 COG2919 Septum formation initi 53.6 31 0.00068 29.1 5.1 36 282-317 51-86 (117)
288 PF04201 TPD52: Tumour protein 53.6 41 0.00089 30.9 6.1 13 242-254 24-36 (162)
289 PRK12704 phosphodiesterase; Pr 53.6 98 0.0021 32.5 9.7 13 252-264 84-96 (520)
290 PRK02793 phi X174 lysis protei 53.4 76 0.0017 25.0 6.9 50 269-318 9-59 (72)
291 TIGR03752 conj_TIGR03752 integ 53.4 42 0.00091 35.3 7.0 33 286-318 107-139 (472)
292 PF09727 CortBP2: Cortactin-bi 53.4 48 0.001 31.1 6.7 27 257-285 98-124 (192)
293 PF10224 DUF2205: Predicted co 53.3 78 0.0017 25.8 7.1 38 277-314 19-56 (80)
294 PF13801 Metal_resist: Heavy-m 53.1 1E+02 0.0022 23.7 9.3 25 239-263 37-61 (125)
295 PF09744 Jnk-SapK_ap_N: JNK_SA 53.1 1.1E+02 0.0023 27.7 8.6 27 287-313 88-114 (158)
296 TIGR02680 conserved hypothetic 53.0 42 0.00091 38.8 7.5 50 263-313 732-781 (1353)
297 PRK10227 DNA-binding transcrip 53.0 99 0.0021 26.6 8.2 29 224-254 39-68 (135)
298 KOG2391|consensus 53.0 2.1E+02 0.0046 29.4 11.5 37 277-313 242-278 (365)
299 COG0172 SerS Seryl-tRNA synthe 52.8 35 0.00076 35.3 6.3 47 255-305 14-60 (429)
300 PF01025 GrpE: GrpE; InterPro 52.7 15 0.00033 31.5 3.2 21 287-307 24-44 (165)
301 TIGR03007 pepcterm_ChnLen poly 52.6 1.3E+02 0.0029 30.0 10.2 21 296-316 356-376 (498)
302 PF04201 TPD52: Tumour protein 52.5 39 0.00085 31.0 5.8 36 275-310 30-65 (162)
303 TIGR00606 rad50 rad50. This fa 52.5 89 0.0019 35.9 9.9 40 272-311 879-918 (1311)
304 COG2316 Predicted hydrolase (H 52.3 19 0.0004 34.0 3.8 43 242-284 151-193 (212)
305 KOG1760|consensus 52.2 42 0.0009 30.0 5.8 88 219-311 11-118 (131)
306 cd07617 BAR_Endophilin_B2 The 52.1 70 0.0015 30.4 7.7 50 227-276 110-159 (220)
307 KOG2264|consensus 52.0 99 0.0021 34.1 9.5 39 277-315 96-134 (907)
308 PRK00736 hypothetical protein; 51.9 88 0.0019 24.3 7.0 41 277-317 15-55 (68)
309 cd07595 BAR_RhoGAP_Rich-like T 51.8 58 0.0013 30.9 7.1 42 234-275 105-146 (244)
310 KOG0996|consensus 51.8 1.3E+02 0.0028 35.3 10.8 77 236-314 352-431 (1293)
311 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.8 1.3E+02 0.0028 25.5 8.6 15 300-314 103-117 (132)
312 PF04880 NUDE_C: NUDE protein, 51.7 13 0.00029 33.9 2.8 24 288-311 24-47 (166)
313 PRK14140 heat shock protein Gr 51.7 49 0.0011 30.7 6.5 13 249-261 46-58 (191)
314 PF10146 zf-C4H2: Zinc finger- 51.7 1.7E+02 0.0038 27.8 10.2 42 276-317 62-103 (230)
315 COG4985 ABC-type phosphate tra 51.7 60 0.0013 32.0 7.2 67 226-299 180-246 (289)
316 cd07616 BAR_Endophilin_B1 The 51.7 66 0.0014 30.6 7.5 48 228-275 111-158 (229)
317 PF11382 DUF3186: Protein of u 51.6 39 0.00085 32.8 6.1 42 276-317 34-75 (308)
318 PF10146 zf-C4H2: Zinc finger- 51.6 63 0.0014 30.7 7.3 43 274-316 46-88 (230)
319 cd07685 F-BAR_Fes The F-BAR (F 51.6 1.3E+02 0.0029 29.1 9.5 59 247-314 98-157 (237)
320 PF04012 PspA_IM30: PspA/IM30 51.5 61 0.0013 29.2 6.9 38 277-314 101-138 (221)
321 PF12709 Kinetocho_Slk19: Cent 51.3 45 0.00098 27.8 5.5 31 276-306 51-81 (87)
322 PF11853 DUF3373: Protein of u 51.2 14 0.0003 38.9 3.1 27 271-297 28-54 (489)
323 PRK14151 heat shock protein Gr 51.1 45 0.00097 30.4 6.0 28 283-310 29-56 (176)
324 KOG2751|consensus 51.0 55 0.0012 34.3 7.3 52 273-324 196-247 (447)
325 KOG2483|consensus 51.0 36 0.00078 32.5 5.6 39 270-308 101-139 (232)
326 KOG1029|consensus 51.0 1.2E+02 0.0025 34.6 10.0 44 273-316 548-591 (1118)
327 TIGR00309 V_ATPase_subD H(+)-t 50.9 1.3E+02 0.0028 27.6 9.0 58 245-315 7-65 (209)
328 cd04782 HTH_BltR Helix-Turn-He 50.9 48 0.001 26.6 5.6 13 242-254 56-68 (97)
329 PRK14160 heat shock protein Gr 50.8 53 0.0011 31.0 6.6 39 275-313 62-100 (211)
330 PF05377 FlaC_arch: Flagella a 50.8 1.1E+02 0.0023 23.7 7.1 43 276-318 9-51 (55)
331 PF07246 Phlebovirus_NSM: Phle 50.6 1.2E+02 0.0025 30.0 9.0 60 259-318 180-239 (264)
332 PF13805 Pil1: Eisosome compon 50.4 81 0.0017 31.0 8.0 20 246-265 137-156 (271)
333 PRK03992 proteasome-activating 50.4 53 0.0011 32.5 6.9 39 278-316 12-50 (389)
334 PF15456 Uds1: Up-regulated Du 50.4 1.7E+02 0.0037 25.4 10.2 22 244-265 19-40 (124)
335 TIGR02231 conserved hypothetic 50.2 1.4E+02 0.003 30.6 10.0 71 247-317 78-167 (525)
336 PF04645 DUF603: Protein of un 50.1 49 0.0011 30.9 6.1 92 224-315 50-158 (181)
337 PRK14141 heat shock protein Gr 50.0 40 0.00086 31.7 5.7 14 248-261 39-52 (209)
338 PRK14127 cell division protein 50.0 50 0.0011 28.3 5.8 46 262-310 21-66 (109)
339 TIGR00634 recN DNA repair prot 49.9 1.1E+02 0.0023 31.9 9.2 37 271-307 336-372 (563)
340 PF14197 Cep57_CLD_2: Centroso 49.8 89 0.0019 24.6 6.7 18 286-303 45-62 (69)
341 PRK06800 fliH flagellar assemb 49.5 60 0.0013 31.0 6.7 27 278-304 49-75 (228)
342 PF12711 Kinesin-relat_1: Kine 49.3 48 0.001 27.5 5.4 40 279-318 22-67 (86)
343 KOG3215|consensus 49.2 78 0.0017 30.5 7.4 72 241-317 67-138 (222)
344 COG1196 Smc Chromosome segrega 49.1 1.4E+02 0.003 34.0 10.6 21 294-314 827-847 (1163)
345 PF10482 CtIP_N: Tumour-suppre 49.0 70 0.0015 28.2 6.6 24 246-269 48-71 (120)
346 PF04102 SlyX: SlyX; InterPro 48.5 61 0.0013 25.0 5.6 41 276-316 13-53 (69)
347 KOG4196|consensus 48.5 53 0.0012 29.5 5.9 26 277-302 84-109 (135)
348 PRK04863 mukB cell division pr 48.2 1.2E+02 0.0027 35.9 10.3 23 246-268 941-963 (1486)
349 TIGR02209 ftsL_broad cell divi 47.9 75 0.0016 24.3 6.1 30 273-302 30-59 (85)
350 PF05103 DivIVA: DivIVA protei 47.8 11 0.00024 30.9 1.5 18 234-251 8-25 (131)
351 KOG1924|consensus 47.8 69 0.0015 36.3 7.8 21 297-317 794-814 (1102)
352 COG5185 HEC1 Protein involved 47.7 59 0.0013 34.9 7.0 32 291-322 371-402 (622)
353 PF05529 Bap31: B-cell recepto 47.7 31 0.00067 30.7 4.4 32 277-308 157-188 (192)
354 PRK14145 heat shock protein Gr 47.6 64 0.0014 30.2 6.6 36 277-312 48-83 (196)
355 PF13234 rRNA_proc-arch: rRNA- 47.5 35 0.00076 31.7 4.9 56 244-299 211-267 (268)
356 cd07614 BAR_Endophilin_A2 The 47.3 77 0.0017 30.0 7.2 50 226-275 104-153 (223)
357 KOG2185|consensus 47.2 51 0.0011 34.6 6.4 61 234-299 378-438 (486)
358 cd00584 Prefoldin_alpha Prefol 47.2 79 0.0017 26.2 6.5 38 277-314 90-127 (129)
359 PRK14157 heat shock protein Gr 47.1 48 0.001 31.7 5.8 18 246-263 83-100 (227)
360 cd00890 Prefoldin Prefoldin is 46.9 93 0.002 25.2 6.8 41 278-318 3-43 (129)
361 PRK14163 heat shock protein Gr 46.9 58 0.0013 30.9 6.2 14 248-261 48-61 (214)
362 PF07139 DUF1387: Protein of u 46.9 99 0.0021 30.9 8.1 50 267-317 221-271 (302)
363 PF14389 Lzipper-MIP1: Leucine 46.8 86 0.0019 25.5 6.5 34 288-321 54-87 (88)
364 TIGR02051 MerR Hg(II)-responsi 46.8 96 0.0021 26.0 7.0 13 242-254 55-67 (124)
365 PRK04778 septation ring format 46.8 1.3E+02 0.0028 31.5 9.3 40 276-315 392-431 (569)
366 PF07889 DUF1664: Protein of u 46.8 2E+02 0.0044 25.2 9.6 88 227-314 31-122 (126)
367 PF09726 Macoilin: Transmembra 46.6 1.7E+02 0.0036 32.1 10.4 44 274-317 538-581 (697)
368 PF10148 SCHIP-1: Schwannomin- 46.6 66 0.0014 31.2 6.7 44 261-310 166-209 (238)
369 KOG0933|consensus 46.6 1.1E+02 0.0024 35.4 9.2 42 277-318 818-859 (1174)
370 PF04420 CHD5: CHD5-like prote 46.5 47 0.001 29.4 5.3 17 300-316 71-87 (161)
371 PF09523 DUF2390: Protein of u 46.4 29 0.00062 29.2 3.8 27 242-268 60-86 (109)
372 COG1730 GIM5 Predicted prefold 46.4 89 0.0019 28.0 7.0 40 276-315 96-135 (145)
373 PRK14153 heat shock protein Gr 46.2 45 0.00098 31.0 5.4 34 279-312 38-71 (194)
374 cd07620 BAR_SH3BP1 The Bin/Amp 46.2 2.1E+02 0.0046 28.0 10.1 35 241-275 112-146 (257)
375 cd04769 HTH_MerR2 Helix-Turn-H 46.1 1.4E+02 0.003 24.6 7.7 19 242-260 55-73 (116)
376 PRK10636 putative ABC transpor 46.0 88 0.0019 33.0 8.1 42 275-316 564-619 (638)
377 PF14942 Muted: Organelle biog 46.0 2.2E+02 0.0047 25.4 9.4 66 249-314 61-126 (145)
378 KOG1029|consensus 45.7 96 0.0021 35.2 8.4 59 258-316 515-577 (1118)
379 PHA03065 Hypothetical protein; 45.7 51 0.0011 34.4 6.1 30 251-285 83-112 (438)
380 COG1730 GIM5 Predicted prefold 45.4 93 0.002 27.9 7.0 49 274-322 6-54 (145)
381 PRK15178 Vi polysaccharide exp 45.3 1.5E+02 0.0032 30.9 9.4 48 273-320 285-339 (434)
382 TIGR00293 prefoldin, archaeal 45.2 80 0.0017 26.0 6.2 39 274-312 86-124 (126)
383 KOG1962|consensus 45.2 76 0.0017 30.3 6.8 31 286-316 163-193 (216)
384 PF10234 Cluap1: Clusterin-ass 45.2 1.2E+02 0.0026 29.7 8.2 47 259-305 167-214 (267)
385 PF08781 DP: Transcription fac 45.1 89 0.0019 28.1 6.8 37 274-310 1-37 (142)
386 PF05400 FliT: Flagellar prote 45.1 1.3E+02 0.0027 22.4 9.2 39 271-309 44-83 (84)
387 PF11221 Med21: Subunit 21 of 45.1 77 0.0017 27.5 6.3 36 284-319 107-142 (144)
388 PF11500 Cut12: Spindle pole b 44.8 1.3E+02 0.0029 27.3 7.9 53 253-305 84-136 (152)
389 PRK13752 putative transcriptio 44.7 1.3E+02 0.0028 26.2 7.7 13 242-254 63-75 (144)
390 PF09304 Cortex-I_coil: Cortex 44.7 85 0.0018 27.2 6.4 38 279-316 35-72 (107)
391 PRK00373 V-type ATP synthase s 44.7 1.9E+02 0.0041 26.4 9.0 59 244-315 8-67 (204)
392 cd04784 HTH_CadR-PbrR Helix-Tu 44.6 1.7E+02 0.0036 24.4 8.1 30 224-255 39-69 (127)
393 PF07334 IFP_35_N: Interferon- 44.2 42 0.00091 27.4 4.2 26 291-316 3-28 (76)
394 PF04949 Transcrip_act: Transc 44.1 1.5E+02 0.0032 27.4 8.1 62 252-313 43-109 (159)
395 PF15186 TEX13: Testis-express 44.0 1.2E+02 0.0026 27.8 7.4 18 294-311 130-147 (152)
396 cd07429 Cby_like Chibby, a nuc 44.0 45 0.00097 28.7 4.6 23 277-299 82-104 (108)
397 PRK00409 recombination and DNA 43.9 1.6E+02 0.0036 32.3 9.9 20 228-247 509-528 (782)
398 TIGR03545 conserved hypothetic 43.8 1.3E+02 0.0029 31.9 9.0 80 239-318 153-242 (555)
399 PF13863 DUF4200: Domain of un 43.7 1.8E+02 0.0039 23.8 10.6 42 277-318 77-118 (126)
400 KOG4343|consensus 43.5 65 0.0014 34.9 6.6 45 260-308 299-343 (655)
401 PRK14161 heat shock protein Gr 43.4 66 0.0014 29.4 5.9 18 246-263 25-42 (178)
402 COG4238 Murein lipoprotein [Ce 43.2 75 0.0016 26.2 5.5 37 275-311 40-76 (78)
403 PRK04778 septation ring format 43.2 2.4E+02 0.0051 29.6 10.6 39 277-315 386-424 (569)
404 PF13514 AAA_27: AAA domain 43.2 1.3E+02 0.0027 34.0 9.1 19 223-241 94-118 (1111)
405 COG3883 Uncharacterized protei 43.2 52 0.0011 32.2 5.5 25 277-301 69-93 (265)
406 PF15070 GOLGA2L5: Putative go 43.2 1.5E+02 0.0033 32.0 9.4 26 247-272 29-54 (617)
407 PF07558 Shugoshin_N: Shugoshi 42.9 30 0.00064 25.2 2.9 41 271-311 4-44 (46)
408 PRK02195 V-type ATP synthase s 42.7 1.8E+02 0.0039 26.8 8.7 52 244-308 7-58 (201)
409 PF13600 DUF4140: N-terminal d 42.6 61 0.0013 25.9 5.0 21 282-302 78-98 (104)
410 PF04822 Takusan: Takusan; In 42.4 60 0.0013 26.7 5.0 30 285-314 15-45 (84)
411 PRK11546 zraP zinc resistance 42.4 2.3E+02 0.005 25.5 9.0 62 244-307 44-108 (143)
412 PF06785 UPF0242: Uncharacteri 42.2 1.3E+02 0.0028 31.0 8.2 14 251-264 86-99 (401)
413 cd01109 HTH_YyaN Helix-Turn-He 42.1 1.5E+02 0.0033 24.1 7.3 64 243-311 38-109 (113)
414 COG0359 RplI Ribosomal protein 42.0 46 0.00099 30.0 4.6 51 263-313 24-74 (148)
415 KOG0992|consensus 42.0 87 0.0019 33.8 7.2 58 258-315 364-423 (613)
416 PF05164 ZapA: Cell division p 41.7 1.4E+02 0.0031 22.7 6.8 24 218-241 11-34 (89)
417 KOG4643|consensus 41.7 69 0.0015 37.0 6.7 53 247-305 177-229 (1195)
418 PF12709 Kinetocho_Slk19: Cent 41.6 92 0.002 26.0 5.9 31 279-309 47-77 (87)
419 PF10552 ORF6C: ORF6C domain; 41.5 49 0.0011 27.6 4.4 54 274-327 8-61 (116)
420 KOG0249|consensus 41.5 1.8E+02 0.004 32.8 9.7 71 246-316 173-258 (916)
421 TIGR03017 EpsF chain length de 41.4 2.3E+02 0.005 27.8 9.7 24 293-316 340-363 (444)
422 PF06098 Radial_spoke_3: Radia 41.3 2.2E+02 0.0049 28.1 9.5 39 235-273 140-179 (291)
423 PF06295 DUF1043: Protein of u 41.1 1.4E+02 0.003 25.6 7.2 43 276-318 27-73 (128)
424 PRK04038 rps19p 30S ribosomal 40.9 36 0.00079 30.3 3.7 19 223-241 11-29 (134)
425 cd07596 BAR_SNX The Bin/Amphip 40.9 1.3E+02 0.0028 25.8 7.1 12 250-261 100-111 (218)
426 TIGR00158 L9 ribosomal protein 40.9 35 0.00075 30.2 3.6 54 261-314 22-75 (148)
427 PF09730 BicD: Microtubule-ass 40.9 76 0.0016 35.0 6.8 42 274-315 55-96 (717)
428 PRK14146 heat shock protein Gr 40.8 75 0.0016 29.9 6.0 27 284-310 64-90 (215)
429 TIGR02977 phageshock_pspA phag 40.7 1.8E+02 0.0038 26.7 8.3 38 275-312 100-137 (219)
430 KOG0995|consensus 40.6 1.2E+02 0.0026 32.9 8.0 20 247-266 308-327 (581)
431 PF12128 DUF3584: Protein of u 40.5 1.8E+02 0.0038 33.4 9.8 14 247-260 656-669 (1201)
432 PF05008 V-SNARE: Vesicle tran 40.4 82 0.0018 23.9 5.2 22 295-316 54-75 (79)
433 PF07798 DUF1640: Protein of u 40.4 1.5E+02 0.0032 26.4 7.5 9 222-230 14-22 (177)
434 PF00261 Tropomyosin: Tropomyo 40.3 1.4E+02 0.003 27.7 7.6 31 286-316 195-225 (237)
435 PF14335 DUF4391: Domain of un 40.1 73 0.0016 29.3 5.7 23 269-291 177-199 (221)
436 PF11917 DUF3435: Protein of u 40.0 87 0.0019 31.3 6.7 57 248-304 289-348 (418)
437 PHA03185 UL14 tegument protein 39.9 56 0.0012 31.2 5.0 53 72-130 150-203 (214)
438 PF05008 V-SNARE: Vesicle tran 39.8 1.7E+02 0.0036 22.3 7.6 24 288-311 54-77 (79)
439 PF02996 Prefoldin: Prefoldin 39.7 89 0.0019 25.2 5.6 36 280-315 76-111 (120)
440 PF07445 priB_priC: Primosomal 39.7 2.8E+02 0.006 25.0 9.2 34 282-315 139-172 (173)
441 PF12001 DUF3496: Domain of un 39.7 65 0.0014 27.8 5.0 35 278-312 4-39 (111)
442 COG1196 Smc Chromosome segrega 39.6 2.2E+02 0.0048 32.4 10.3 17 225-241 145-161 (1163)
443 PF06657 Cep57_MT_bd: Centroso 39.4 1.2E+02 0.0026 24.3 6.2 40 276-315 19-63 (79)
444 KOG0250|consensus 39.2 2.1E+02 0.0046 33.2 10.0 33 287-319 400-432 (1074)
445 PF14932 HAUS-augmin3: HAUS au 39.1 3.2E+02 0.0069 25.8 9.9 81 234-317 70-150 (256)
446 PF15035 Rootletin: Ciliary ro 39.1 1E+02 0.0022 28.2 6.5 19 281-299 95-113 (182)
447 KOG0500|consensus 39.1 57 0.0012 34.8 5.4 87 228-317 407-501 (536)
448 cd00584 Prefoldin_alpha Prefol 39.1 1.2E+02 0.0027 25.0 6.5 40 278-317 3-42 (129)
449 TIGR02680 conserved hypothetic 39.0 2.4E+02 0.0053 32.9 10.7 38 279-316 288-325 (1353)
450 PF13035 DUF3896: Protein of u 38.9 71 0.0015 25.0 4.5 37 276-312 11-50 (61)
451 PRK10698 phage shock protein P 38.9 1.8E+02 0.0039 27.1 8.1 36 276-311 101-136 (222)
452 PF09755 DUF2046: Uncharacteri 38.8 3.2E+02 0.007 27.5 10.2 68 249-316 86-163 (310)
453 PF14282 FlxA: FlxA-like prote 38.8 2.1E+02 0.0045 23.8 7.7 55 247-303 26-80 (106)
454 PF11414 Suppressor_APC: Adeno 38.8 1.2E+02 0.0025 25.0 6.1 23 274-296 21-43 (84)
455 PF09236 AHSP: Alpha-haemoglob 38.6 1.1E+02 0.0024 25.8 5.9 17 225-241 2-18 (89)
456 PF14282 FlxA: FlxA-like prote 38.6 1.1E+02 0.0024 25.5 6.0 60 247-308 19-78 (106)
457 PRK14156 heat shock protein Gr 38.4 77 0.0017 29.1 5.6 23 286-308 39-61 (177)
458 cd07596 BAR_SNX The Bin/Amphip 38.4 1.7E+02 0.0038 25.1 7.5 30 249-278 106-135 (218)
459 PF04568 IATP: Mitochondrial A 38.3 1.9E+02 0.0041 24.5 7.4 33 279-311 67-99 (100)
460 cd07627 BAR_Vps5p The Bin/Amph 38.3 2.2E+02 0.0047 26.0 8.5 25 269-293 110-134 (216)
461 KOG0239|consensus 38.2 2.4E+02 0.0052 30.8 10.0 49 257-306 225-273 (670)
462 cd00632 Prefoldin_beta Prefold 38.2 99 0.0022 25.1 5.7 33 284-316 66-98 (105)
463 PF13863 DUF4200: Domain of un 38.0 2.2E+02 0.0048 23.2 10.2 69 248-316 33-109 (126)
464 PF06810 Phage_GP20: Phage min 38.0 1.3E+02 0.0027 26.8 6.7 48 245-298 18-68 (155)
465 cd04770 HTH_HMRTR Helix-Turn-H 38.0 2.1E+02 0.0046 23.4 7.7 68 244-312 39-110 (123)
466 PF12938 M_domain: M domain of 37.9 53 0.0011 31.7 4.6 12 244-255 144-155 (235)
467 cd01279 HTH_HspR-like Helix-Tu 37.8 78 0.0017 25.6 5.0 52 244-306 39-90 (98)
468 PF14182 YgaB: YgaB-like prote 37.8 1.2E+02 0.0026 25.1 6.0 46 274-319 24-71 (79)
469 PF03920 TLE_N: Groucho/TLE N- 37.8 55 0.0012 29.4 4.3 44 274-317 23-66 (135)
470 PRK00409 recombination and DNA 37.7 87 0.0019 34.4 6.7 16 224-239 491-506 (782)
471 COG0789 SoxR Predicted transcr 37.6 2.1E+02 0.0047 22.9 9.1 60 242-316 56-115 (124)
472 COG4026 Uncharacterized protei 37.6 99 0.0021 30.4 6.3 41 275-315 150-190 (290)
473 PF12329 TMF_DNA_bd: TATA elem 37.5 1.6E+02 0.0035 23.2 6.5 25 286-310 45-69 (74)
474 PF04871 Uso1_p115_C: Uso1 / p 37.4 2.8E+02 0.0061 24.2 9.6 28 291-318 87-114 (136)
475 PF05384 DegS: Sensor protein 37.4 2.3E+02 0.0051 25.6 8.3 75 245-320 46-123 (159)
476 PRK11147 ABC transporter ATPas 37.4 1.3E+02 0.0028 31.6 7.7 46 271-316 565-623 (635)
477 KOG0993|consensus 37.4 1.4E+02 0.0029 31.8 7.6 35 277-311 137-171 (542)
478 PF14265 DUF4355: Domain of un 37.3 2.4E+02 0.0052 23.3 8.1 28 271-298 39-66 (125)
479 TIGR01069 mutS2 MutS2 family p 37.3 89 0.0019 34.3 6.7 41 276-316 517-557 (771)
480 TIGR00293 prefoldin, archaeal 37.2 1.1E+02 0.0023 25.3 5.8 39 276-314 1-39 (126)
481 KOG4657|consensus 37.2 3E+02 0.0065 27.0 9.4 80 233-316 42-121 (246)
482 PF02344 Myc-LZ: Myc leucine z 37.1 77 0.0017 22.3 4.1 25 277-301 4-28 (32)
483 COG0233 Frr Ribosome recycling 37.1 80 0.0017 29.6 5.5 81 222-310 100-182 (187)
484 KOG2751|consensus 37.1 1.4E+02 0.0031 31.4 7.8 89 224-312 168-256 (447)
485 PF09738 DUF2051: Double stran 37.0 1.6E+02 0.0034 29.2 7.8 50 267-316 105-154 (302)
486 PRK03992 proteasome-activating 36.9 1.3E+02 0.0028 29.9 7.2 48 261-308 1-49 (389)
487 KOG0971|consensus 36.7 3.2E+02 0.007 31.8 10.8 82 234-315 233-317 (1243)
488 PF10458 Val_tRNA-synt_C: Valy 36.7 77 0.0017 24.0 4.5 26 286-311 2-27 (66)
489 PF11221 Med21: Subunit 21 of 36.6 1.1E+02 0.0023 26.6 5.9 35 273-307 103-137 (144)
490 KOG4010|consensus 36.5 1E+02 0.0023 29.3 6.1 38 274-311 44-81 (208)
491 PF07889 DUF1664: Protein of u 36.4 2.4E+02 0.0052 24.8 8.0 52 265-316 58-110 (126)
492 PRK00106 hypothetical protein; 36.2 2.6E+02 0.0057 29.8 9.7 64 250-316 90-153 (535)
493 PF05278 PEARLI-4: Arabidopsis 36.1 2.3E+02 0.0049 28.0 8.6 57 259-316 179-235 (269)
494 smart00787 Spc7 Spc7 kinetocho 35.9 3.4E+02 0.0074 26.8 9.9 69 246-316 185-253 (312)
495 cd04788 HTH_NolA-AlbR Helix-Tu 35.9 82 0.0018 25.2 4.8 58 242-302 37-94 (96)
496 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.8 2.7E+02 0.0059 23.6 9.3 79 246-324 16-95 (132)
497 PF01519 DUF16: Protein of unk 35.8 2.9E+02 0.0062 23.8 8.4 73 244-316 23-102 (102)
498 cd00187 TOP4c DNA Topoisomeras 35.7 2E+02 0.0044 29.8 8.6 77 226-314 360-445 (445)
499 PRK10869 recombination and rep 35.5 2.4E+02 0.0053 29.6 9.3 67 234-313 305-373 (553)
500 PF11262 Tho2: Transcription f 35.5 1.7E+02 0.0037 28.3 7.7 67 246-324 30-96 (298)
No 1
>KOG4196|consensus
Probab=100.00 E-value=1.7e-38 Score=271.80 Aligned_cols=98 Identities=48% Similarity=0.776 Sum_probs=97.2
Q ss_pred CCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 222 DLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 222 i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
+.||||+||+|||||||+.|+||++|||.+|||+||||||||||||||.||++|+++||.++.+|++|+++|+.|++++.
T Consensus 22 d~lsDd~LvsmSVReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 22 DRLSDDELVSMSVRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred CCcCHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q psy4245 302 EERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 302 rErd~yK~K~e~L~~~~f 319 (328)
+|+|+||.||++|+.|+|
T Consensus 102 ~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 102 RELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999999987
No 2
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=99.95 E-value=5.8e-31 Score=209.86 Aligned_cols=92 Identities=43% Similarity=0.754 Sum_probs=86.4
Q ss_pred CChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
||||+|++|||+|||++|.|||++|+..||++|||+||||||++||+||++++.+||.++..|+.+++.|+.|++.+.+|
T Consensus 1 ~s~eeL~~m~v~efn~~L~~lt~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e 80 (92)
T PF03131_consen 1 FSDEELVSMSVREFNRLLRGLTEEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQE 80 (92)
T ss_dssp --HHHHHHS-HHHHHHHCTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC
T ss_pred CCHHHHhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy4245 304 RNHYKKQYEIVM 315 (328)
Q Consensus 304 rd~yK~K~e~L~ 315 (328)
++.||++|+.|.
T Consensus 81 ~~~lk~~~~~L~ 92 (92)
T PF03131_consen 81 RDELKRKLEQLQ 92 (92)
T ss_dssp CCCCCCCHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999884
No 3
>KOG3863|consensus
Probab=99.89 E-value=7.5e-24 Score=215.64 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=104.4
Q ss_pred CCCCCCCCCCCCCChhHhhcccHHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy4245 212 RTTTCPYSESDLISDDLLMCLSVRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQ 289 (328)
Q Consensus 212 r~~~~~~~l~i~fSDEeLVsmSVrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~E 289 (328)
|+..++.++.|+|+.|+||+|+|+|||.+| +.||++|+..||+||||+|||+||||||||||+.|.+||.++..|+++
T Consensus 447 rde~ra~a~~iPF~vd~IinLp~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~e 526 (604)
T KOG3863|consen 447 RDEHRAKALHIPFSVDEIINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKE 526 (604)
T ss_pred hhhhhhhhccCCCchHHhcCCcHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 445566779999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 290 LQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 290 le~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
+++|++|..++.+++..+|+++..|++.+|+
T Consensus 527 KeqLl~Er~~~d~~L~~~kqqls~L~~~Vf~ 557 (604)
T KOG3863|consen 527 KEQLLRERDELDSTLGVMKQQLSELYQEVFQ 557 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999886
No 4
>smart00338 BRLZ basic region leucin zipper.
Probab=99.19 E-value=1.3e-10 Score=87.08 Aligned_cols=62 Identities=27% Similarity=0.418 Sum_probs=58.8
Q ss_pred HHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 251 KLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 251 ~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
..|..||++|||.||+.||.||.+.+.+||.++..|..+.+.|+.+++.+..|+..+|..+.
T Consensus 3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999999999999999999999999999999999999999999999999998764
No 5
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=98.94 E-value=5.4e-09 Score=78.22 Aligned_cols=61 Identities=26% Similarity=0.369 Sum_probs=54.6
Q ss_pred HHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 251 KLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 251 ~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
..|..+|+.+||.||+.||.||.+.+..||.++..|..+.+.|+.++..+..+.+.++...
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578899999999999999999999999999999999999999999999999888888764
No 6
>KOG4005|consensus
Probab=98.67 E-value=2.7e-07 Score=87.58 Aligned_cols=64 Identities=25% Similarity=0.386 Sum_probs=49.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 235 RELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 235 rELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
+-=-+.|.+||.|| |-.||.||||++||+.|-||..--+++|.+++.|..|-+.|+.|+..|..
T Consensus 55 ~rKr~RL~HLS~EE----K~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 55 KRKRRRLDHLSWEE----KVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHHHHhhcccCHHH----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456788999998 56799999999999999999887777777777766666666666555443
No 7
>KOG0709|consensus
Probab=98.59 E-value=7.5e-07 Score=90.12 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=76.6
Q ss_pred cCCCCCCCccCCCCCCCCCCCCCCCCCCC--------CCCCChhHhhcccHHHHHHhc--CCCCHHHHHHHHHHHhhhhc
Q psy4245 192 HDEPSRPMSVSSSSVMSPSSRTTTCPYSE--------SDLISDDLLMCLSVRELNKKL--HGYPRDQIAKLKAKRRTLKN 261 (328)
Q Consensus 192 ~~~~~rp~s~~s~s~~sp~~r~~~~~~~l--------~i~fSDEeLVsmSVrELNrlL--~GLSkeEv~~LKQrRRTLKN 261 (328)
+..+.-++++.+++.+|+++..|+. +.+ .-.+++||.--+ ++|=+.+- --|||.|-.-||++||..||
T Consensus 182 s~~~~~~~~~~~s~~~s~ss~~~s~-~~l~~~~~~~q~L~LteeEkrLL-~kEG~slPs~lPLTKaEEriLKrvRRKIrN 259 (472)
T KOG0709|consen 182 SLIPDELMSADGSSPASPSSTAGSS-HQLSTGLAHLQPLVLTEEEKRLL-TKEGYSLPSKLPLTKAEERILKRVRRKIRN 259 (472)
T ss_pred cccccccCCCCCCCccccccccccc-cccccccccccceeccHHHHHHH-HhccCcCcccCCchHHHHHHHHHHHHHHHh
Confidence 3444455555444445554444442 221 234577776555 56655443 34999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKH-------LQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~-------L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
+.-||-.|+||.+=++.||+.+.. |+++++.|..++..|..-+..|..
T Consensus 260 K~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 260 KRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred hhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 999999999999999999986655 555555555555555544444433
No 8
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=98.57 E-value=3.1e-07 Score=67.18 Aligned_cols=49 Identities=29% Similarity=0.508 Sum_probs=44.0
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
..||. +||.||+.||.||.+....||.++..|..+...|+.+++.|.+|
T Consensus 6 ~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 6 RERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44555 99999999999999999999999999999999999999888775
No 9
>KOG0837|consensus
Probab=98.36 E-value=1.7e-06 Score=82.60 Aligned_cols=83 Identities=25% Similarity=0.379 Sum_probs=70.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 236 ELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 236 ELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+++.-+.-.--+.-.+||-.|.|+.||.+|..||+|||+.+.+||+.++.|..+...|..++.++++-...+|+++..--
T Consensus 189 ~~~~pispid~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi 268 (279)
T KOG0837|consen 189 ELKEPISPIDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHI 268 (279)
T ss_pred ccCCCCCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444566788899999999999999999999999999999999999999999999999999999999987655
Q ss_pred hcc
Q psy4245 316 RNK 318 (328)
Q Consensus 316 ~~~ 318 (328)
..+
T Consensus 269 ~ng 271 (279)
T KOG0837|consen 269 HNG 271 (279)
T ss_pred hcc
Confidence 544
No 10
>KOG4343|consensus
Probab=97.50 E-value=0.00029 Score=73.23 Aligned_cols=62 Identities=29% Similarity=0.340 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++.+|..-|-.|||.||+-+|+||.+-...||.... +|.+|+++|++|-..+|++++.|..
T Consensus 276 d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq-------~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 276 DIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQ-------ALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 4555666669999999999999999999888665544 4555555555555555555555544
No 11
>KOG4571|consensus
Probab=97.48 E-value=0.00057 Score=66.34 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=58.0
Q ss_pred HHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 255 KRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 255 rRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+|.+-+|++||..-|+||..+.++|+.|...|.++-++||....++.+|++-+|+-+...+.
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~~ 290 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVYK 290 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999999999999999999999999999999887764
No 12
>KOG3584|consensus
Probab=97.26 E-value=0.00052 Score=67.09 Aligned_cols=50 Identities=30% Similarity=0.359 Sum_probs=42.5
Q ss_pred HHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 252 LKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 252 LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.|..=|.+|||-||.-||.||.+=+.=||..+..|+.|-+.|-+|+..|+
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 34455789999999999999999999999999999998888877766553
No 13
>KOG3119|consensus
Probab=95.95 E-value=0.032 Score=52.92 Aligned_cols=74 Identities=14% Similarity=0.238 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+..+.+.-+.+-||=||=.||+.||.|+.+...+....+..|++|.+.|+.+++++.+|+..+++-+-.+...+
T Consensus 186 ~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~ 259 (269)
T KOG3119|consen 186 SPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPG 259 (269)
T ss_pred CchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44566667777788899999999999999999998888889999999999999999999998888777655543
No 14
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.62 E-value=0.16 Score=50.07 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 268 CRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 268 CRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
=|.+-+.|.+.+...+.+|+.++..+..|++++..|||.||.|++.|-..
T Consensus 127 ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E 176 (319)
T PF09789_consen 127 EREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE 176 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677899999999999999999999999999999999999999999654
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.54 E-value=0.37 Score=38.11 Aligned_cols=43 Identities=23% Similarity=0.472 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+.+|..++..|..+.+.|+.|+.+++.|+..++.++..|.+.
T Consensus 26 e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 26 ENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666778888889999999999999999888653
No 16
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=93.31 E-value=0.49 Score=35.51 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh--ccccCcccccC
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY---KKQYEIVMR--NKDRSEAEHLY 327 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y---K~K~e~L~~--~~f~~~~~h~y 327 (328)
....+..++..|+.++++++.|++.+..|++.+ ...++++.+ .++.-+||..|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~~~E~v~ 75 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVKPGEIVF 75 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcCCCCEEE
Confidence 344555566666777777777777777777776 455666655 36666777655
No 17
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.96 E-value=2 Score=40.18 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|...||.|+..|..+++.|+.|+.++..|++.+|.+++.|..
T Consensus 88 aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 88 AQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999965
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.57 E-value=2.1 Score=39.69 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
+.+|+.++.+|..|++.++.|+..+..+.+..|.
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.57 E-value=1.3 Score=40.37 Aligned_cols=44 Identities=14% Similarity=0.375 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+...|+.++..|+.+++.|..|+..+.++...|+..|+.|..-
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~I 147 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDI 147 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888888889999888654
No 20
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.56 E-value=1.8 Score=39.72 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++.+||..+.+|+++...++.+++....|+..+|..++++..
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~ 173 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKE 173 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555444444455555555555555555543
No 21
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.02 E-value=0.9 Score=37.87 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc--cccCcccccC
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK---QYEIVMRN--KDRSEAEHLY 327 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~---K~e~L~~~--~f~~~~~h~y 327 (328)
....|+.++..+++++++|+.++++|..|++.+|. .+|++.+. ++--+||-.|
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gEivy 85 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGETFY 85 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCCEEE
Confidence 34455556666667777777777777777777755 45555553 6666666544
No 22
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.99 E-value=2.9 Score=33.79 Aligned_cols=74 Identities=19% Similarity=0.314 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLH-QRQELEV---TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLq-q~~~LE~---E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..-+++..+-+.||.++...=....+.+++. ++..+-. +...|..+...++.++..+..+.+.+..+++.+...
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~ 103 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLS 103 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4457888888889998888887777777764 4444444 466788888888888888888888888888877543
No 23
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=89.60 E-value=1.6 Score=33.43 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.+||.++..+...+..+++|+++++.+++.+++.+.+|.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888888888888777664
No 24
>PRK11637 AmiB activator; Provisional
Probab=89.55 E-value=3.8 Score=40.69 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhhchHH
Q psy4245 246 RDQIAKLKAKRRTLKNRGY 264 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGY 264 (328)
++++..+++....+++..-
T Consensus 46 ~~~l~~l~~qi~~~~~~i~ 64 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 25
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.37 E-value=3.7 Score=37.30 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=29.5
Q ss_pred HhhcccHHHHHHhc--C---------------CCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 228 LLMCLSVRELNKKL--H---------------GYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 228 eLVsmSVrELNrlL--~---------------GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
-|+.|+|+|+-+.| - -|+-++...++.+-..|+........+...++.
T Consensus 26 gI~~~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~ 90 (188)
T PF03962_consen 26 GIVSMSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEE 90 (188)
T ss_pred CCchhhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888876 1 256666666666666666665555544444433
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.26 E-value=1.7 Score=35.63 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+....+.|..|+.+++.|.+.++.++..|.+-
T Consensus 44 ~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 44 AQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33335558888888888999999888888653
No 27
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=89.08 E-value=1.1 Score=31.24 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+-.+|..|++.+.+.+..+|.|++.|+.+.
T Consensus 2 dEqkL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 2 DEQKLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345778888888899999999999998763
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.54 E-value=5.1 Score=37.22 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQ-RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq-~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.|+..+|++-..+.|. .+-|+..+++ ...+++....|+.+.++|+.|++.++.|++.++++++.+...
T Consensus 100 ~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 100 NQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665555444433 2233333333 445667777788888888888888888888888888888754
No 29
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.52 E-value=5.6 Score=36.17 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhhhchHHHHHh-----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNC-----R----SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnC-----R----kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
.++..++..+.+|+.+.-+.-- . .....++..++..+..|+.++++++++++..+++++.+++.++.
T Consensus 27 ~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 27 SELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655544322 1 11112233333444444444444444444444444444444443
No 30
>PRK14127 cell division protein GpsB; Provisional
Probab=88.10 E-value=4.3 Score=34.65 Aligned_cols=28 Identities=18% Similarity=0.466 Sum_probs=19.5
Q ss_pred CCCChhHhhcccHHHHHHhcCCCCHHHHHHH
Q psy4245 222 DLISDDLLMCLSVRELNKKLHGYPRDQIAKL 252 (328)
Q Consensus 222 i~fSDEeLVsmSVrELNrlL~GLSkeEv~~L 252 (328)
..||-.+|.+ ++|.+.++|+..+||...
T Consensus 4 ~~LTp~DI~~---KeF~~~~RGYd~~EVD~F 31 (109)
T PRK14127 4 IKLTPKDILE---KEFKTSMRGYDQDEVDKF 31 (109)
T ss_pred CCCCHHHHhh---CccCCCCCCCCHHHHHHH
Confidence 3456666554 467777899999998754
No 31
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.60 E-value=3.5 Score=36.62 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++.+.+.+..|+++|+.|++....|.+.+|.+++.|...
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556677788999999999999999999999999998764
No 32
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=87.15 E-value=2.2 Score=34.41 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=32.8
Q ss_pred HHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 264 YAQNCRSKR-----LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 264 YAQnCRkKR-----Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
|.++|++|. ++++..|..+...+..+++.|+.+...+.+++...|.
T Consensus 14 v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 14 VRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 445555553 6778888888888888888888887777777666554
No 33
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=87.08 E-value=3 Score=41.63 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=34.2
Q ss_pred CCCCCChh--Hhhcc--cHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH
Q psy4245 220 ESDLISDD--LLMCL--SVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR 276 (328)
Q Consensus 220 l~i~fSDE--eLVsm--SVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~ 276 (328)
+..-||.| .|..| .-..+|.+|. ..+...-+..|+++|+|+..-.--+|||.++
T Consensus 88 iKsvFSne~qdl~~Mk~a~~ni~~~lp---~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~ 145 (323)
T PF08537_consen 88 IKSVFSNEEQDLTRMKNACTNINSRLP---NRERKSGREERRLLKDRILRSEAFKRKLLEK 145 (323)
T ss_pred HHHHhCccHHHHHHHHHHhhhhhhhcC---CCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556553 34444 2334566652 2233344556789999999999999998777
No 34
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=86.85 E-value=3.7 Score=38.49 Aligned_cols=67 Identities=25% Similarity=0.394 Sum_probs=44.6
Q ss_pred CCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhh--chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 223 LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLK--NRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMK 294 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLK--NRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk 294 (328)
.+|||+|...+-+||=+.|+-...+-+..|.++.|..| ||.-. --+.+|..|.+.+..|+.+-+.|+
T Consensus 7 ~~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ-----~hl~EIR~LKe~NqkLqedNqELR 75 (195)
T PF10226_consen 7 KVSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQ-----QHLNEIRGLKEVNQKLQEDNQELR 75 (195)
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998777777777777776665 22111 124455566655555555554444
No 35
>PRK11637 AmiB activator; Provisional
Probab=86.18 E-value=8.1 Score=38.39 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+..++.++..++.+++.+..+++++..+++..+..+..+.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444444433
No 36
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.14 E-value=4.7 Score=31.16 Aligned_cols=43 Identities=9% Similarity=0.277 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+.+||..+..++.-++.|...+.+-.++++.++..+..|...
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777776655
No 37
>KOG1414|consensus
Probab=85.72 E-value=0.061 Score=53.42 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=41.9
Q ss_pred HHHHHHhhhhchHHHHH---hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy4245 251 KLKAKRRTLKNRGYAQN---CRSKRLHQRQELEVTNKHLQ-QQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 251 ~LKQrRRTLKNRGYAQn---CRkKRLqq~~~LE~E~~~L~-~Ele~Lk~E~~rl~rErd~y 307 (328)
..|+.+|+.+|+.+|+. ||.||..-...|..++..|+ ..-..|..+++.|..|.+.+
T Consensus 152 ~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l 212 (395)
T KOG1414|consen 152 EEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHL 212 (395)
T ss_pred hHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHH
Confidence 45788999999999999 99999988888887777777 44444445555555544443
No 38
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.68 E-value=3.3 Score=34.95 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++..|-+++..|+.++..|-.|+++|..|.+.++.++..+..
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666677777777777777788888888888888777755
No 39
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=85.63 E-value=12 Score=31.77 Aligned_cols=75 Identities=29% Similarity=0.386 Sum_probs=32.0
Q ss_pred hcccHHHHHHhc----------CCCCHHHHHHHHHHHhhhhc--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 230 MCLSVRELNKKL----------HGYPRDQIAKLKAKRRTLKN--RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 230 VsmSVrELNrlL----------~GLSkeEv~~LKQrRRTLKN--RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
-+||+.||+.+| .+++ ++..+++.+-.+++ +..| .....++.+...++.++..+..+.
T Consensus 2 ~~lS~~eL~~Ll~d~~~l~~~v~~l~--~~~~~~~~~~~l~~~n~~lA--------e~nL~~~~~l~~~r~~l~~~~~~~ 71 (150)
T PF07200_consen 2 QDLSTEELQELLSDEEKLDAFVKSLP--QVQELQQEREELLAENEELA--------EQNLSLEPELEELRSQLQELYEEL 71 (150)
T ss_dssp GS-TTHHHHHHHHH-HHHHHHGGGGS----HHHHHHHHHHHHHHHHHH--------HHH----HHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHcCHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHH--------HHhcccchHHHHHHHHHHHHHHHH
Confidence 456666666665 2333 36666666666543 2222 122233333334444444444444
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4245 298 KQIVEERNHYKKQYEIV 314 (328)
Q Consensus 298 ~rl~rErd~yK~K~e~L 314 (328)
..+..+-+...++++.+
T Consensus 72 ~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 72 KELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 40
>KOG4005|consensus
Probab=85.42 E-value=12 Score=36.70 Aligned_cols=44 Identities=11% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+++.+|++|+..|+.|-+.|+..++-|.-+-..+..+++.|...
T Consensus 97 ~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 97 YEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 67788888888888888888877777777777666666655544
No 41
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.17 E-value=6.3 Score=36.19 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=32.4
Q ss_pred HHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 252 LKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHL-------QQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 252 LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L-------~~Ele~Lk~E~~rl~rErd~yK 308 (328)
++--|.||.+..-.++++.+.+.....||.+..+- +.++..|..++.+++++...++
T Consensus 88 V~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 88 VKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667667777777777776666666655543 4444444444444444433333
No 42
>PRK03918 chromosome segregation protein; Provisional
Probab=85.14 E-value=7.6 Score=41.19 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=17.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhhch
Q psy4245 234 VRELNKKLHGYPRDQIAKLKAKRRTLKNR 262 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~LKQrRRTLKNR 262 (328)
+.+++..|..|..++...++.....|++.
T Consensus 572 ~~~~~~~l~~L~~~~~~~~~~~~~~l~~~ 600 (880)
T PRK03918 572 LAELLKELEELGFESVEELEERLKELEPF 600 (880)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHhhhh
Confidence 34455555666655666777777777643
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=85.07 E-value=4.9 Score=31.67 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.-...|..|+..|..+...+..|...+..-.+.-.+|+|+|-..
T Consensus 14 ~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~R 57 (65)
T TIGR02449 14 EYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITR 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33467777888888888888888888877777777777777543
No 44
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.51 E-value=3.2 Score=43.92 Aligned_cols=17 Identities=12% Similarity=-0.013 Sum_probs=7.6
Q ss_pred CCCCCCCChhHhhcccH
Q psy4245 218 YSESDLISDDLLMCLSV 234 (328)
Q Consensus 218 ~~l~i~fSDEeLVsmSV 234 (328)
+.+..+=..|+|+++--
T Consensus 108 Fqf~~~~p~eeLvtle~ 124 (546)
T PF07888_consen 108 FQFRAPKPLEELVTLED 124 (546)
T ss_pred cccCCCCccccceeecc
Confidence 33333334455555543
No 45
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.26 E-value=13 Score=34.19 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
...++.+...|+-+-+.|.....++.+|||.+..+++.....+
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777788888888888888888888888888766554
No 46
>PRK00295 hypothetical protein; Provisional
Probab=84.06 E-value=6 Score=30.81 Aligned_cols=41 Identities=12% Similarity=0.171 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.+||..+..++.-++.|...+.+-.++++.++.++..|..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~ 47 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIK 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666655533
No 47
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=84.06 E-value=19 Score=37.41 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=52.6
Q ss_pred hchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhccccCc
Q psy4245 260 KNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSE------------IKQIVEERNHYKKQYEIVMRNKDRSE 322 (328)
Q Consensus 260 KNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E------------~~rl~rErd~yK~K~e~L~~~~f~~~ 322 (328)
-||.|-..|.+|=-++-+.|-..+..|+.-++.|++. ++.+.+|++..+..+.+|..+.-+++
T Consensus 203 s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eK 277 (426)
T smart00806 203 SNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEK 277 (426)
T ss_pred cchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5899999999886677788888888888888888764 66789999999999999988877665
No 48
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=83.67 E-value=5.9 Score=33.11 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=40.2
Q ss_pred CChhHhhcccHHHHHHhc-CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKL-HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL-~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
|++++|..+..= ..+. .|+|-++|..+=+....... -...|+ +....|+.....|+.+++.|+.-++.+..
T Consensus 37 Y~~~~l~~l~~I--~~lr~~G~~L~~I~~~l~~~~~~~~--~~~~~~----~~~~~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 37 YSRRDRARLKLI--LRGKRLGFSLEEIRELLDLYDPPGG--NRKQLE----KMLEKIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred cCHHHHHHHHHH--HHHHHCCCCHHHHHHHHHhhccCCc--hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666554311 1111 68888888777665443321 111122 22344555555566666666655555555
Q ss_pred HHHHHHHH
Q psy4245 303 ERNHYKKQ 310 (328)
Q Consensus 303 Erd~yK~K 310 (328)
.++.+..+
T Consensus 109 ~~~~~~~~ 116 (118)
T cd04776 109 AEERCRER 116 (118)
T ss_pred HHHHHHHH
Confidence 55555444
No 49
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=83.58 E-value=16 Score=36.79 Aligned_cols=72 Identities=10% Similarity=0.216 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQ-EL----EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~-~L----E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-++|..+-++||.++.+.-+.....+++...- .+ +++...|..+..+|+.++..+..+.+.++.++..+...
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37788888888888877766665555543222 11 11145677788888888888888888888888776654
No 50
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.50 E-value=7.3 Score=37.94 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=35.8
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 233 SVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 233 SVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
..+++..-|..|.+++...++..+..-+.+--.......-..+...|+.+-.....+...++.++.++..|++.++.+|+
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~ 123 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE 123 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444443444444444444444443333333333333333333444444444444444555555555555555555554
Q ss_pred HHH
Q psy4245 313 IVM 315 (328)
Q Consensus 313 ~L~ 315 (328)
.+.
T Consensus 124 ~~~ 126 (314)
T PF04111_consen 124 YAS 126 (314)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 51
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.37 E-value=7.4 Score=33.98 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 294 KSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..+++.+..|+..+..+++.|.+
T Consensus 115 ~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 115 REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 52
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=83.36 E-value=7.8 Score=31.55 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+=+.++..|.+....|...++..+.|...|..|-+.++..++.|...
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344578889999999999999999999999999999999999999775
No 53
>PRK00736 hypothetical protein; Provisional
Probab=83.31 E-value=6.6 Score=30.55 Aligned_cols=41 Identities=10% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.+||..+..++.-++.|...+.+-.++++.++.++..|..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777777777777777777766644
No 54
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.98 E-value=24 Score=30.99 Aligned_cols=85 Identities=18% Similarity=0.292 Sum_probs=64.3
Q ss_pred cccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 231 CLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ----RQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 231 smSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq----~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
.+-...||..+. |.-.+|..-|++..+-+=+-++-+.|+.. ...|..+....+.++.+++.++.++..+++.
T Consensus 48 kien~~l~~kIe----ERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k 123 (177)
T PF13870_consen 48 KIENQQLNEKIE----ERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDK 123 (177)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555553 44556666677788888899999998754 4567777777888899999999999999999
Q ss_pred HHHHHHHHHhccc
Q psy4245 307 YKKQYEIVMRNKD 319 (328)
Q Consensus 307 yK~K~e~L~~~~f 319 (328)
++.....|...+.
T Consensus 124 ~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 124 LRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999876643
No 55
>KOG1103|consensus
Probab=82.73 E-value=4.5 Score=41.66 Aligned_cols=101 Identities=20% Similarity=0.242 Sum_probs=81.9
Q ss_pred hhHhhcccHHHHHHhc-----CCCCHHHHHH--HHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 226 DDLLMCLSVRELNKKL-----HGYPRDQIAK--LKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 226 DEeLVsmSVrELNrlL-----~GLSkeEv~~--LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
.++|+.|=+-|-.+.| .|.-.+||.. -|++-|+-|----|..-|.|-|+.--..|+.+.++..|++.|+.|++
T Consensus 183 Heqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ 262 (561)
T KOG1103|consen 183 HEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELE 262 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776655554 4666666653 46677888888899999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccCccccc
Q psy4245 299 QIVEERNHYKKQYEIVMRNKDRSEAEHL 326 (328)
Q Consensus 299 rl~rErd~yK~K~e~L~~~~f~~~~~h~ 326 (328)
+..+....+|...+.|..-+-.-|++|-
T Consensus 263 ree~r~K~lKeEmeSLkeiVkdlEA~hQ 290 (561)
T KOG1103|consen 263 REEKRQKMLKEEMESLKEIVKDLEADHQ 290 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999999999999888777777764
No 56
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.72 E-value=20 Score=35.70 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhcc
Q psy4245 280 EVTNKHLQQQLQKMKSE--------------IKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E--------------~~rl~rErd~yK~K~e~L~~~~ 318 (328)
|.|+.+|+.|+.+|+.. +.+.++||..+|+-+|.++.+.
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555555432 5567778888888887777663
No 57
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.52 E-value=2.9 Score=34.09 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.++..++.|.+|+++++.|-..+..++..|.+
T Consensus 43 ~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 43 NAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566666667777777777777666654
No 58
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.51 E-value=16 Score=41.44 Aligned_cols=91 Identities=20% Similarity=0.342 Sum_probs=69.3
Q ss_pred cHHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 233 SVRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 233 SVrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
...+++..+ ...++++...+.....++-. |+.=.....++...++.+...++.+.++...++..+.+++..++++
T Consensus 450 ~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 526 (1201)
T PF12128_consen 450 ELAELKQQLKNPQYTEEEKEQLEQADKRLEQ---AQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQ 526 (1201)
T ss_pred HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555 35788888877776666543 3444444456677778888888888999999999999999999999
Q ss_pred HHHHHhccccCccccc
Q psy4245 311 YEIVMRNKDRSEAEHL 326 (328)
Q Consensus 311 ~e~L~~~~f~~~~~h~ 326 (328)
++.|....++.+|+=+
T Consensus 527 ~~~l~~~L~p~~gSL~ 542 (1201)
T PF12128_consen 527 IAELQRQLDPQKGSLL 542 (1201)
T ss_pred HHHHHHhhCCCCCcHH
Confidence 9999999999999843
No 59
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=82.43 E-value=5.3 Score=34.13 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+++..|-.+...|+.++..|-.|+++|..|-+.++.+++.+
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666677777777777777777766
No 60
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.21 E-value=5.6 Score=28.99 Aligned_cols=40 Identities=15% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.||.+-..|.+.-+.|+.+...+.+|.+.++..+..|..-
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777788888888888888888888888888888877653
No 61
>PRK10722 hypothetical protein; Provisional
Probab=81.87 E-value=6.2 Score=38.17 Aligned_cols=71 Identities=11% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhhhchHH------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 236 ELNKKLHGYPRDQIAKLKAKRRTLKNRGY------AQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 236 ELNrlL~GLSkeEv~~LKQrRRTLKNRGY------AQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+=..|..++...-.-|+=-=+....+.| +..-|++||++-.+ .++++|+++..++.++++....
T Consensus 127 ~~l~rl~~~~~~~p~~lrPL~qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD---------~qlD~lrqq~~~Lq~~L~~t~r 197 (247)
T PRK10722 127 QIVERLNAYSLQIPAQVRPLYQLWRDGQALQLALAEERQRYQKLQQSSD---------SELDALRQQQQRLQYQLELTTR 197 (247)
T ss_pred HHHHHHhhcccccchhhhHHHHHHHHhhHHHHhHHHHHHHHHHHhhccH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555566666666 77778888876553 7788888888888888888888
Q ss_pred HHHHHH
Q psy4245 310 QYEIVM 315 (328)
Q Consensus 310 K~e~L~ 315 (328)
|+|.|+
T Consensus 198 KLEnLT 203 (247)
T PRK10722 198 KLENLT 203 (247)
T ss_pred HHHHHH
Confidence 888886
No 62
>PRK04406 hypothetical protein; Provisional
Probab=81.71 E-value=7.9 Score=30.82 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+.+||..+..++.-++.|...+.+-.++++.++.++..|..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776666666666666666644
No 63
>PLN02678 seryl-tRNA synthetase
Probab=81.66 E-value=3.7 Score=42.15 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQEL----EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L----E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-+++..+-+.||.++-+.=+...+.+.+...-.. ..+...|.++..+|+.|+..+..+.+.++.++..+...
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~ 107 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3778888888888877776666666555332211 12344577788888888888888888888888877654
No 64
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.47 E-value=13 Score=34.50 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+.+++..+.+.+..|+.+.-+. ..+++.|+..+.+|++.++.++.+++++.++++.++
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l------~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQL------EREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555433222 234444444455555555555555555544444444
No 65
>PRK02119 hypothetical protein; Provisional
Probab=81.29 E-value=8.5 Score=30.39 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+.+||..+..++.-++.|...+.+-.++++.++.++..|..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~ 51 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMAN 51 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677666666666777766666666666666666666643
No 66
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=81.14 E-value=16 Score=29.05 Aligned_cols=65 Identities=28% Similarity=0.307 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRL--HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRL--qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
++|..|+..==-||-|.|-..=|-.+. +....+.+++.+|..++..|++|+.+..+.+......+
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666899999877766653 55667777777777777777777777766666655544
No 67
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.10 E-value=12 Score=36.29 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=24.5
Q ss_pred ChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHH-HHHhHHHHHH
Q psy4245 225 SDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGY-AQNCRSKRLH 274 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGY-AQnCRkKRLq 274 (328)
.|.+.+.-....++..+-.+ .+....|+..-+.||+... ..+|..-+|.
T Consensus 163 ~D~~~L~~~~~~l~~~~~~l-~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~ 212 (325)
T PF08317_consen 163 EDYAKLDKQLEQLDELLPKL-RERKAELEEELENLKQLVEEIESCDQEELE 212 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcCHHHHH
Confidence 34444444444444443221 2344555555566666655 4567665543
No 68
>PRK04325 hypothetical protein; Provisional
Probab=81.03 E-value=8.8 Score=30.34 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.+||..+..++.-++.|...+.+-.++++.++.++..|.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~ 50 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLY 50 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777766666666666666666553
No 69
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=80.73 E-value=2.6 Score=37.82 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=31.3
Q ss_pred CCChhHhhcccHHHHHHhc---------CCCCHHHHHHHHHHHhh
Q psy4245 223 LISDDLLMCLSVRELNKKL---------HGYPRDQIAKLKAKRRT 258 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL---------~GLSkeEv~~LKQrRRT 258 (328)
+++.|+|.+||.+||-.+| +||+.++..+||.+|..
T Consensus 19 G~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~ 63 (143)
T PTZ00096 19 GVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKA 63 (143)
T ss_pred cCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHH
Confidence 5789999999999998876 78999999999988764
No 70
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=80.50 E-value=23 Score=30.33 Aligned_cols=10 Identities=10% Similarity=-0.167 Sum_probs=5.6
Q ss_pred CCChhHhhcc
Q psy4245 223 LISDDLLMCL 232 (328)
Q Consensus 223 ~fSDEeLVsm 232 (328)
..++..+|+.
T Consensus 30 ~~~~~~vin~ 39 (151)
T PF11559_consen 30 EDNDVRVINC 39 (151)
T ss_pred cccHHHHHHH
Confidence 4555556555
No 71
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=80.50 E-value=31 Score=31.03 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=17.5
Q ss_pred HhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchH
Q psy4245 228 LLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 228 eLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRG 263 (328)
.++...++|+...|..+ +..+..+...+++++.+.
T Consensus 26 ~~l~q~ird~e~~l~~a-~~~~a~~~a~~~~le~~~ 60 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKA-RQALARVMANQKRLERKL 60 (221)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 56666666666655221 133444444455554443
No 72
>PRK09039 hypothetical protein; Validated
Probab=80.48 E-value=9.6 Score=37.54 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd 305 (328)
|++||+.|+.+++.+..+++
T Consensus 142 L~~qI~aLr~Qla~le~~L~ 161 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALD 161 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 73
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.37 E-value=5.2 Score=29.92 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQI 300 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl 300 (328)
+++..|+.++..|+.+.+.|+.|++.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.05 E-value=10 Score=41.05 Aligned_cols=37 Identities=27% Similarity=0.583 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 267 NCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 267 nCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
.||.|+ .+||.|.+.|+.|+.....++..+..|+..|
T Consensus 542 ~~r~r~----~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 542 SCRQRR----RQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477665 4566666666666666666665555555433
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.00 E-value=20 Score=33.26 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+++..|+.+...|.+|++.|+..++++.+..+..+++++.|.
T Consensus 49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 76
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=79.78 E-value=12 Score=33.95 Aligned_cols=93 Identities=11% Similarity=0.114 Sum_probs=43.4
Q ss_pred CCChhHhhcccHHHHHHhc-CCCCHHHHHHHH--HH-----HhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 223 LISDDLLMCLSVRELNKKL-HGYPRDQIAKLK--AK-----RRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMK 294 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL-~GLSkeEv~~LK--Qr-----RRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk 294 (328)
.|++++|. -++.+..+. .|++-++|.... +. ++.+.+-..+. ..-=..++..|+....+|++.++.+.
T Consensus 37 ~y~~~dl~--~L~~I~~l~~~Gm~i~~i~~~~~~~l~~~~l~~~G~~t~~~R--~~lLe~~~~~l~~ri~eLe~~l~~ka 112 (175)
T PRK13182 37 IFTEEDLQ--LLEYVKSQIEEGQNMQDTQKPSSNDVEETQVNTIVQNISSVD--FEQLEAQLNTITRRLDELERQLQQKA 112 (175)
T ss_pred EECHHHHH--HHHHHHHHHHcCCCHHHHHHHhhhhhhHHHHHHcCCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677763 244444444 678877775522 11 12222111100 00001344445555555555555554
Q ss_pred HHHHH-----HHHHHHHHHHHHHHHHhccc
Q psy4245 295 SEIKQ-----IVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 295 ~E~~r-----l~rErd~yK~K~e~L~~~~f 319 (328)
.++.. =.+|++.+..++++|...+.
T Consensus 113 d~vvsYqll~hr~e~ee~~~~l~~le~~~~ 142 (175)
T PRK13182 113 DDVVSYQLLQHRREMEEMLERLQKLEARLK 142 (175)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44322 24566666666666655443
No 77
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.74 E-value=23 Score=32.19 Aligned_cols=33 Identities=15% Similarity=0.016 Sum_probs=14.8
Q ss_pred hhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhh
Q psy4245 226 DDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRT 258 (328)
Q Consensus 226 DEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRT 258 (328)
-++|-+.-.+||=|...---.|.-..|-.+|..
T Consensus 60 r~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde 92 (189)
T PF10211_consen 60 REELYSQCFDELIRQVTIDCPERGLLLLRVRDE 92 (189)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHH
Confidence 355666556665554421122333444444433
No 78
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=79.73 E-value=8.5 Score=31.99 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHL--QQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L--~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+++++..|.++-....+| ...||.++..| ..++.+|+.+++++.-+++.+..+++.+.+
T Consensus 32 a~~~~~~~l~~~~~~~~~R-------------l~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRR-------------LQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred ccHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3556666665554443332 23466677777 777777777777777777777777766644
No 79
>PRK10698 phage shock protein PspA; Provisional
Probab=79.64 E-value=25 Score=32.72 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=25.3
Q ss_pred HhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHh
Q psy4245 228 LLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNC 268 (328)
Q Consensus 228 eLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnC 268 (328)
.++.+-++|+...|..+ +..+..+...+++++.+.....-
T Consensus 27 k~l~q~i~em~~~l~~~-r~alA~~~A~~k~~er~~~~~~~ 66 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEV-RSTSARALAEKKQLTRRIEQAEA 66 (222)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777766444 55666666677777755444333
No 80
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=79.32 E-value=8.6 Score=28.72 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..+..|+.++..|..++..|..+++.++..+..|..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777777777777777777777777764
No 81
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.12 E-value=11 Score=29.61 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+.+||..+..++.-++.|...+.+-.++++.++.++..|.
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~ 49 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLT 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665555555555555555555555555555553
No 82
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.72 E-value=9.8 Score=39.92 Aligned_cols=46 Identities=17% Similarity=0.272 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 272 RLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 272 RLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-+.++.+||.+...++.+++.+..+.+.+..+++....+++.|...
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~ 252 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKK 252 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888887777653
No 83
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=78.62 E-value=20 Score=31.35 Aligned_cols=87 Identities=23% Similarity=0.345 Sum_probs=47.5
Q ss_pred CCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 223 LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRS---KRLHQRQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRk---KRLqq~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
-.|.++|..|..+ ++. |. +|+..|++.-+.|+....+-++.- .-..++.+|+.++..|+..++.|+.....
T Consensus 68 ~~s~eel~~ld~e-i~~-L~----~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 68 VPSPEELAELDAE-IKE-LR----EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred CCCchhHHHHHHH-HHH-HH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3567777766544 222 22 577777777777776666655543 33455566666666666666666652111
Q ss_pred H-HHHHHHHHHHHHHHH
Q psy4245 300 I-VEERNHYKKQYEIVM 315 (328)
Q Consensus 300 l-~rErd~yK~K~e~L~ 315 (328)
+ ..|+..++..+..+.
T Consensus 142 vs~ee~~~~~~~~~~~~ 158 (169)
T PF07106_consen 142 VSPEEKEKLEKEYKKWR 158 (169)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 1 224555555554443
No 84
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=78.21 E-value=17 Score=36.79 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQEL-EV---TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L-E~---E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.-+++..+-+.||.++.+.-+...+.+++...-.. .. +...|..+..+|++++..+..+...++.++..+...
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888777766665555555332221 11 233577777778888888888888877777776544
No 85
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=77.27 E-value=6.7 Score=32.66 Aligned_cols=78 Identities=10% Similarity=0.133 Sum_probs=39.4
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 232 LSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 232 mSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.+|.++=+. .|++...+-..+..=+. .+...-=..+... .......++.++.+|++++.++..|++.+|...
T Consensus 30 ~sv~evA~e-~gIs~~tl~~W~r~y~~---~~~~~~~~~~~~~----~~~~~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 30 MTVSLVARQ-HGVAASQLFLWRKQYQE---GSLTAVAAGEQVV----PASELAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred CCHHHHHHH-HCcCHHHHHHHHHHHhh---cccccccccccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554333 67888888877655221 1110000000000 111223456666777777777777777777766
Q ss_pred HHHHhc
Q psy4245 312 EIVMRN 317 (328)
Q Consensus 312 e~L~~~ 317 (328)
+-...-
T Consensus 102 ~~~~~~ 107 (121)
T PRK09413 102 EYGRAK 107 (121)
T ss_pred HHhchh
Confidence 554443
No 86
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.24 E-value=11 Score=30.83 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|+-+++.|+.++..+.+|........++|.+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 5555666666555555555555555554444
No 87
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.18 E-value=31 Score=32.25 Aligned_cols=71 Identities=13% Similarity=0.335 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ-RQ----ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq-~~----~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
++|+..+|..=..|.........++..|.. +. .+..++..++..+..|..|+..+..++......|+.|..
T Consensus 215 ~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~ 290 (312)
T PF00038_consen 215 KEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444444444444444444422 22 233344445556666666666666666666666666543
No 88
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=77.17 E-value=11 Score=30.68 Aligned_cols=68 Identities=12% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+++..+.+-++-.|.=|-+-- ..-+-+.+..|++.+..+..++++|..++..+..+...+|.++..|.
T Consensus 37 ~EL~~l~~d~~vy~~VG~vfv-~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 37 EELEKLADDAEVYKLVGNVLV-KQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHcCCCcchHHHHhhhHHh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444433443333333222 23345777889999999999999999999999999999999998875
No 89
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=77.12 E-value=12 Score=31.76 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
+++..||.....|..++..|+.++..+..|-..++-..+.|+....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666655544
No 90
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=77.02 E-value=12 Score=36.39 Aligned_cols=43 Identities=28% Similarity=0.557 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+++...||++..+|.+|+..|+.|.+.+.++...+-..+..+.
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666655555555555544
No 91
>KOG0898|consensus
Probab=76.53 E-value=3 Score=37.60 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCChhHhhcccHHHH---------HHhcCCCCHHHHHHHHHHHhhhh
Q psy4245 223 LISDDLLMCLSVREL---------NKKLHGYPRDQIAKLKAKRRTLK 260 (328)
Q Consensus 223 ~fSDEeLVsmSVrEL---------NrlL~GLSkeEv~~LKQrRRTLK 260 (328)
++..|+|..||+.+| -++.+||+..+...||.-|+.-|
T Consensus 26 GVdld~Lldms~~~~~~l~~ar~rrR~~RGL~~k~~~liKklrkAkk 72 (152)
T KOG0898|consen 26 GVDLDQLLDMSTEQLVKLFPARQRRRLNRGLTRKPHSLIKKLRKAKK 72 (152)
T ss_pred CCCHHHHhcCCHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHh
Confidence 578899999999999 44448999999999998776533
No 92
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=76.43 E-value=69 Score=31.66 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+++||....+++++.....++++++++..+.++..+..|+
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444444444444444443
No 93
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=76.32 E-value=20 Score=39.31 Aligned_cols=69 Identities=32% Similarity=0.389 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKR-LHQRQELEVTNKHLQQQLQK----------MKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKR-Lqq~~~LE~E~~~L~~Ele~----------Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+...+...|++||-=.==..-|-.| ++...+||.|+..|+.++.. |+-|+.++..|.+.++..++.+.+
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554433333334344 47788999999999887755 556788888888888888877654
No 94
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=76.29 E-value=8.4 Score=35.88 Aligned_cols=40 Identities=18% Similarity=0.345 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQI---VEERNHYKK 309 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl---~rErd~yK~ 309 (328)
........+|..|++.|++|+.+|+.++.++ +.|.+.+|.
T Consensus 65 ~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 65 FESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667788888888888888888887744 444444443
No 95
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.28 E-value=16 Score=39.66 Aligned_cols=42 Identities=2% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
........|+..++.+++.|++++.+-..+++.++.+++.|.
T Consensus 467 ~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 467 RDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666777777888888888888888888777776
No 96
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=75.82 E-value=23 Score=29.07 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAK 255 (328)
Q Consensus 242 ~GLSkeEv~~LKQr 255 (328)
.|+|-+||..+=+.
T Consensus 56 ~G~sl~eI~~~l~~ 69 (123)
T cd04770 56 LGFSLAEIRELLSL 69 (123)
T ss_pred CCCCHHHHHHHHHh
Confidence 57887777666543
No 97
>PLN02678 seryl-tRNA synthetase
Probab=75.52 E-value=20 Score=36.92 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=25.5
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
..++.+|+|++.-+ -++++..|..+...|..+++.|+.|...+.+++.
T Consensus 17 ~v~~~l~~R~~~~~----~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~ 64 (448)
T PLN02678 17 LIRESQRRRFASVE----LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVA 64 (448)
T ss_pred HHHHHHHhhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555553111 2555666666666666666666666555555543
No 98
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=75.47 E-value=4.1 Score=33.21 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHhhhhchHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYA 265 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYA 265 (328)
+|.+++..|+.++.-+|+.|+-
T Consensus 39 Yt~~di~~l~~I~~llr~~G~~ 60 (99)
T cd04765 39 YRPKDVELLLLIKHLLYEKGYT 60 (99)
T ss_pred eCHHHHHHHHHHHHHHHHCCCC
Confidence 7888888898888888877764
No 99
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=75.42 E-value=18 Score=35.19 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 272 RLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 272 RLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
+.++....+.++.+|+.++++++++.+.+..|++.+
T Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 60 (378)
T TIGR01554 25 LEKELTAAALEKEELETDVEKLKEEIKLLEDAIADL 60 (378)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666665555544443
No 100
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.36 E-value=46 Score=29.11 Aligned_cols=42 Identities=12% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++..+|.++..+++.+++.++.++.++..+.+.++.+...+.
T Consensus 144 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (191)
T PF04156_consen 144 KEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ 185 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555554443
No 101
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.27 E-value=44 Score=31.27 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhchHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQN 267 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQn 267 (328)
++..|+.+...|.++.....
T Consensus 231 el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 231 ELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccchhhhhhhHHHHH
Confidence 33344444444444444333
No 102
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.11 E-value=40 Score=31.04 Aligned_cols=71 Identities=11% Similarity=0.215 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRL-HQRQELEVTNKHLQQ--------QLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~--------Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+||.-||.+=|..|++..+..=+.|+. .++..+++++..|.. +.+.|..+++.+..+++.-..++..|.+
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999998888777765 456667777766553 4556666666666666666666655554
No 103
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=74.80 E-value=33 Score=35.54 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=64.5
Q ss_pred hhHhhcccHHHHHHhc--CC---CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHH--HHH---HHHHHHHHHHHHHH
Q psy4245 226 DDLLMCLSVRELNKKL--HG---YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQE--LEV---TNKHLQQQLQKMKS 295 (328)
Q Consensus 226 DEeLVsmSVrELNrlL--~G---LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~--LE~---E~~~L~~Ele~Lk~ 295 (328)
|-+++.-..+.+-+.| +| +.-+++..|...||+++.+.=+..-+.+++.+.-. +.. ....|.++++.|+.
T Consensus 3 d~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~ 82 (429)
T COG0172 3 DLKLIRENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKE 82 (429)
T ss_pred hHHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 3444444556666655 33 44578888889999998888777777766655443 221 23568888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy4245 296 EIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 296 E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+++.+..+.+..+.+++.+.-.
T Consensus 83 ~l~~~e~~~~~~~~~l~~~ll~ 104 (429)
T COG0172 83 KLKELEAALDELEAELDTLLLT 104 (429)
T ss_pred HHHhccHHHHHHHHHHHHHHHh
Confidence 9999999988888888776543
No 104
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=74.50 E-value=15 Score=31.78 Aligned_cols=32 Identities=9% Similarity=0.029 Sum_probs=16.8
Q ss_pred CChhHhhcccHHHHHHhc-CCCCHHHHHHHHHHHh
Q psy4245 224 ISDDLLMCLSVRELNKKL-HGYPRDQIAKLKAKRR 257 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL-~GLSkeEv~~LKQrRR 257 (328)
|++++|..+. .+..+. .|+|-++|.++=+...
T Consensus 38 Y~~~~l~~l~--~I~~lr~~G~sL~eI~~~l~~~~ 70 (134)
T cd04779 38 YDETALDRLQ--LIEHLKGQRLSLAEIKDQLEEVQ 70 (134)
T ss_pred ECHHHHHHHH--HHHHHHHCCCCHHHHHHHHHhhc
Confidence 4555554432 222222 6888887777654433
No 105
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=74.50 E-value=15 Score=30.41 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.++.+..++++...+++.++.+++.|
T Consensus 81 ~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 81 CLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444555555555443
No 106
>KOG3650|consensus
Probab=74.35 E-value=13 Score=32.26 Aligned_cols=49 Identities=24% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccC
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN--KDRS 321 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~--~f~~ 321 (328)
+.|..+|......|.+.++..+.|+-+++.|.+.+-+.+|.|.+. +|.+
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQs 112 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQS 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhhc
Confidence 578889999999999999999999999999999999999999864 6654
No 107
>PLN02320 seryl-tRNA synthetase
Probab=74.28 E-value=40 Score=35.52 Aligned_cols=85 Identities=6% Similarity=0.088 Sum_probs=58.8
Q ss_pred cHHHHHHhc--CCC--CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 233 SVRELNKKL--HGY--PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQEL---EVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 233 SVrELNrlL--~GL--SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L---E~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
-.+++-+.| +|+ +-+++..+-++||.++.+.-....+.+++...-.. ..+...|.++...|+.++..+..+..
T Consensus 75 n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~ 154 (502)
T PLN02320 75 NKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLV 154 (502)
T ss_pred CHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 554 46889999999999988877776666655433221 12345677888888888888888888
Q ss_pred HHHHHHHHHHhc
Q psy4245 306 HYKKQYEIVMRN 317 (328)
Q Consensus 306 ~yK~K~e~L~~~ 317 (328)
.++.+++.+...
T Consensus 155 ~~~~~l~~~~l~ 166 (502)
T PLN02320 155 KLTDELQLEAQS 166 (502)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=74.14 E-value=9.8 Score=41.13 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|+..+..|+.|++.|+.++.++.+|+..|+.+|+.+.+
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 109
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=74.10 E-value=33 Score=35.00 Aligned_cols=36 Identities=6% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+...|..++..+..+++++.++++.++.++..|..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344455566666666666666666666666666654
No 110
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.82 E-value=11 Score=35.88 Aligned_cols=57 Identities=14% Similarity=0.303 Sum_probs=41.7
Q ss_pred HHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 249 IAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 249 v~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+.-|..+|=|.|.| ..+||.|+..+..++..|+.|++.++..--.+=.|+--|++..
T Consensus 81 LpIVtsQRDRFR~R-------------n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 81 LPIVTSQRDRFRQR-------------NAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 33455666666644 4688999999999999999999998888776666666665543
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.52 E-value=22 Score=34.15 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
..+...|+.|...++.++..|..|+.++..++..+..+.+.|.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~ 130 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLK 130 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666665555555555555544443
No 112
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=73.32 E-value=38 Score=27.64 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=22.0
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
.+.+.+.+=-.|-.=|.-+.+...+||.++..|..+..+|..|+.+..-+.+.
T Consensus 12 rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~ 64 (89)
T PF13747_consen 12 RLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANR 64 (89)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHH
Confidence 33333333333434444444444444444444444444444444433333333
No 113
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=73.21 E-value=16 Score=29.87 Aligned_cols=33 Identities=9% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
...++.+++.|....++|.+|+|....+++.|.
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 344555555555555555555555555555553
No 114
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=72.69 E-value=11 Score=34.52 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=45.0
Q ss_pred HHhcCCCCHHHHHHHHHHHhhhhchHHHHHh------H---------HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 238 NKKLHGYPRDQIAKLKAKRRTLKNRGYAQNC------R---------SKR--LHQRQELEVTNKHLQQQLQKMKSEIKQI 300 (328)
Q Consensus 238 NrlL~GLSkeEv~~LKQrRRTLKNRGYAQnC------R---------kKR--Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl 300 (328)
|..++.-.+++|..+|+.|.-+|=-+|.+.- . ..- ++.+ |..++..|+.+.+.|..++..+
T Consensus 53 Ns~vrk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v--~~~e~~kl~~~~e~L~~e~~~L 130 (170)
T PRK13923 53 NSVVRKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDV--LSEQIGKLQEEEEKLSWENQTL 130 (170)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445679999999999888721221110 0 000 1111 4455566777777777777777
Q ss_pred HHHHHHHHHHHHHHHh
Q psy4245 301 VEERNHYKKQYEIVMR 316 (328)
Q Consensus 301 ~rErd~yK~K~e~L~~ 316 (328)
.++...++.-|+.|..
T Consensus 131 ~~~~~~~~eDy~~Li~ 146 (170)
T PRK13923 131 KQELAITEEDYRALIV 146 (170)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766654
No 115
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=72.69 E-value=7.5 Score=39.21 Aligned_cols=48 Identities=23% Similarity=0.437 Sum_probs=32.9
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
..|..+|+|++ . .=++.+..|..+.++|+.+++.|+.|+..+.+++..
T Consensus 13 ~v~~~l~~R~~-~----~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 13 AVKEALAKRGF-P----LDVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHhcCC-c----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666643 1 126777788888888888888888887777777654
No 116
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.18 E-value=18 Score=31.20 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 243 GYPRDQIAKLKAKRRTLKNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQK---MKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 243 GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~---Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|-+-.-+.+|...=|++-.=.++..-+..++ .++..|..|+..|-.+.+. ...++..+..+...+..||+.+..
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Le 89 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLE 89 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444444444444444444 4556666666666655543 345566778888888888888764
No 117
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=71.90 E-value=22 Score=29.74 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=22.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 267 NCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 267 nCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
.|+..=..+...|+.++..+..++++|+.++.+...|+..+|..
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444344455555555555555555555555555555555443
No 118
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=71.82 E-value=12 Score=35.95 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQ----IVEERNHYKK 309 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~r----l~rErd~yK~ 309 (328)
+....+|++|+.+|++|+.+|+.++.. +++|.+.||+
T Consensus 65 ~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 65 LKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888887777665554 4444444444
No 119
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=71.76 E-value=17 Score=37.60 Aligned_cols=43 Identities=19% Similarity=0.321 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
++...||++++.++.++.++..++.+...+++.+++++..+..
T Consensus 59 ~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 59 DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 4455666666666666666666666666666666555555543
No 120
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=71.64 E-value=23 Score=30.32 Aligned_cols=30 Identities=3% Similarity=0.233 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
|+.+++.+..+.+++.+-++.++..++.+.
T Consensus 83 l~~k~~~i~~~i~~L~~~~~~L~~~i~~~~ 112 (131)
T cd04786 83 LERKVADIEALEARLAQNKAQLLVLIDLIE 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555555555566666555554
No 121
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=71.52 E-value=19 Score=30.79 Aligned_cols=10 Identities=0% Similarity=-0.107 Sum_probs=5.4
Q ss_pred HHHHHHhccc
Q psy4245 310 QYEIVMRNKD 319 (328)
Q Consensus 310 K~e~L~~~~f 319 (328)
.++.||..||
T Consensus 74 NL~~LY~EGF 83 (110)
T PRK13169 74 NLARLYQEGF 83 (110)
T ss_pred HHHHHHHcCc
Confidence 4555555554
No 122
>PLN02320 seryl-tRNA synthetase
Probab=71.20 E-value=12 Score=39.25 Aligned_cols=48 Identities=19% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
...++.+|+|++. . -++++..|..+.+.+..+++.|+.|...+.+++.
T Consensus 77 ~~v~~~l~~R~~~--~---~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 77 EAVAINIRNRNSN--A---NLELVLELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHhcCCC--c---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777752 2 1788888888888888888888888877777654
No 123
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=70.98 E-value=12 Score=29.45 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
-+-+..|+.+...+..++++|..++..+..++..++.++..+
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777778888888888888888888888877776544
No 124
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.81 E-value=11 Score=31.35 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
+++..++.++..|+++.+.|+.|++.++...+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~d 65 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGGQE 65 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 45555666666666666666666666655333
No 125
>PRK00846 hypothetical protein; Provisional
Probab=70.70 E-value=26 Score=28.39 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q psy4245 280 EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSE 322 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~ 322 (328)
|+.+..|...+.+..+++.++.+.+..++.|+..+..+.+.+.
T Consensus 26 e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~ 68 (77)
T PRK00846 26 EQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADP 68 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 3444455555556666666666666666667777665554433
No 126
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=70.63 E-value=2.3 Score=38.68 Aligned_cols=30 Identities=17% Similarity=0.459 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
|+..|+.++++|+.|+..|++|+ .+++|+.
T Consensus 25 EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34446666666666666666666 5555543
No 127
>PF13166 AAA_13: AAA domain
Probab=70.33 E-value=37 Score=35.39 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhhchH
Q psy4245 234 VRELNKKLHGYPRDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~LKQrRRTLKNRG 263 (328)
+.++|..+.... +.+..+++....++++.
T Consensus 372 i~~~n~~i~~~n-~~~~~~~~~~~~~~~~~ 400 (712)
T PF13166_consen 372 IDELNELIEEHN-EKIDNLKKEQNELKDKL 400 (712)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 556666553322 25666666666666554
No 128
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=70.29 E-value=1.4 Score=36.81 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+|+.++-.+.+++..|..++.++..|++.+|.+++.|...
T Consensus 2 ~~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~ 42 (118)
T PF08286_consen 2 QELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQ 42 (118)
T ss_dssp -----------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666544
No 129
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.29 E-value=79 Score=28.11 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=7.0
Q ss_pred CCCCHHHHHHH
Q psy4245 242 HGYPRDQIAKL 252 (328)
Q Consensus 242 ~GLSkeEv~~L 252 (328)
.|||.+|...|
T Consensus 14 ~Gft~~QAe~i 24 (177)
T PF07798_consen 14 AGFTEEQAEAI 24 (177)
T ss_pred CCCCHHHHHHH
Confidence 57777776554
No 130
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=70.15 E-value=18 Score=29.91 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRL----HQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRL----qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
||..+-.+.-..+.|.=|-++|-++. +.+..||+|+..|...++...+|+..+.+|-.
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 56666666666666666888887774 57888999999888888888888888887643
No 131
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=70.05 E-value=5.1 Score=31.71 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=40.5
Q ss_pred CCCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHH
Q psy4245 221 SDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKR 272 (328)
Q Consensus 221 ~i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKR 272 (328)
.-.+..|+|.-+||.|||.... +=.+||.+||..|-+-||--.|++.=.||
T Consensus 14 ~~~i~~d~LsllsV~El~eRIa-lLq~EIeRlkAe~~kK~~srsAAeaLFrr 64 (65)
T COG5509 14 GHEIGNDALSLLSVAELEERIA-LLQAEIERLKAELAKKKASRSAAEALFRR 64 (65)
T ss_pred ccccchhHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHhhhccHHHHHHHHhc
Confidence 3346788899999999999753 22489999999999988888887776665
No 132
>PRK00846 hypothetical protein; Provisional
Probab=70.01 E-value=25 Score=28.52 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.+.+||..+...+.-++.|...+.+..++++.++.++..|...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~r 56 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888999999999999999999999998877654
No 133
>KOG0930|consensus
Probab=70.01 E-value=10 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy4245 242 HGYPRDQIAKLKAKRRT 258 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRT 258 (328)
.+||.+|-.+|-.+||+
T Consensus 9 ~~Ls~~E~~eL~~ir~r 25 (395)
T KOG0930|consen 9 NDLSEEERMELENIRRR 25 (395)
T ss_pred CCCCHHHHHhHHHHHHH
Confidence 47999999999999886
No 134
>smart00338 BRLZ basic region leucin zipper.
Probab=69.96 E-value=19 Score=26.85 Aligned_cols=27 Identities=19% Similarity=0.571 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
+..|+.++..|..+++.|..|+..+..
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555443
No 135
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=69.93 E-value=23 Score=37.23 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.|+..+.++.+.+.++++.+..|+..||.+++.+...
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 3333344666666666667777777777777655443
No 136
>PRK09343 prefoldin subunit beta; Provisional
Probab=69.87 E-value=26 Score=29.73 Aligned_cols=53 Identities=9% Similarity=0.168 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEA 323 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~ 323 (328)
-|-+.+.+|++.+.-+..+++.|.++...+......+..++..+...+....|
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 44667788888888889999999999999999999999999999888766554
No 137
>KOG1319|consensus
Probab=69.51 E-value=1.1e+02 Score=29.38 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=51.3
Q ss_pred CCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHH-------------HhH--------HHHHHHHHHHHH
Q psy4245 223 LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQ-------------NCR--------SKRLHQRQELEV 281 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQ-------------nCR--------kKRLqq~~~LE~ 281 (328)
.||.+.= +|.+|-.+ +-..+-.|+||--=||||-- .|- .|-.+-+..|.+
T Consensus 49 ~hS~a~k--~syk~rrr-------~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~ 119 (229)
T KOG1319|consen 49 YHSEAYK--ESYKDRRR-------RAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHK 119 (229)
T ss_pred chhHHHH--hhHHHHHH-------HHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4554433 55555333 44566778888888899963 452 244555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++..-+.|+..|+++...|. .+|..||.+.+.
T Consensus 120 ~k~kqe~e~s~L~k~vtAL~----iIk~~YEqM~~~ 151 (229)
T KOG1319|consen 120 EKKKQEEEVSTLRKDVTALK----IIKVNYEQMVKA 151 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 66666677777777766554 466677777665
No 138
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=69.47 E-value=9 Score=31.17 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
+++|..|+.+|+.++++|..|+.+..++
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777778888888887777777666
No 139
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=69.37 E-value=38 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=17.9
Q ss_pred CChhHhhcccHHHHHHhc-CCCCHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKL-HGYPRDQIAKLKAKR 256 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL-~GLSkeEv~~LKQrR 256 (328)
|+.++|..+. ....+- -|+|-+||..+=+..
T Consensus 39 Y~~~~l~~l~--~I~~lr~~G~sL~eI~~~l~~~ 70 (113)
T cd01109 39 FTEEDLEWLE--FIKCLRNTGMSIKDIKEYAELR 70 (113)
T ss_pred CCHHHHHHHH--HHHHHHHcCCCHHHHHHHHHHH
Confidence 5666665542 222211 589988888765543
No 140
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=69.33 E-value=61 Score=29.55 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhhhchHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQ-------NCRSKRLHQRQELEVTNKHLQQQLQKMKS----EIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQ-------nCRkKRLqq~~~LE~E~~~L~~Ele~Lk~----E~~rl~rErd~yK~K~e~ 313 (328)
++..++.+.-.|+.+.-+. .=|.+.+.....|+.++..|+.+++++.. .++++.++...+|...+.
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444333 35667777778888777777777664432 244444444444444443
No 141
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=69.10 E-value=19 Score=33.41 Aligned_cols=34 Identities=12% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
+.++++.+..+|.+..+.+.||+.++.++..+..
T Consensus 157 ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 157 KAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555444433
No 142
>KOG4687|consensus
Probab=69.07 E-value=11 Score=37.89 Aligned_cols=50 Identities=16% Similarity=0.154 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
.-++...+.|......|.-++..+-.|++++.-|||+||.|...|-...|
T Consensus 156 anfic~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELf 205 (389)
T KOG4687|consen 156 ANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELF 205 (389)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44577788888999999999999999999999999999999999877654
No 143
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=68.91 E-value=21 Score=28.75 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=7.5
Q ss_pred CCCCHHHHHHHH
Q psy4245 242 HGYPRDQIAKLK 253 (328)
Q Consensus 242 ~GLSkeEv~~LK 253 (328)
.|+|-+++..+-
T Consensus 56 ~g~~l~~i~~~~ 67 (103)
T cd01106 56 LGFSLKEIKELL 67 (103)
T ss_pred cCCCHHHHHHHH
Confidence 467766666654
No 144
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.85 E-value=30 Score=30.23 Aligned_cols=50 Identities=10% Similarity=0.242 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
.|-..+.+|++.+.-|+-+++.|.+.-+++..+.+.++.++.++.+....
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~ 116 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAAN 116 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 55667788888888899999999999999999999999998888766443
No 145
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.84 E-value=36 Score=30.99 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
.+|+.++..|+.+++.|..++..+....+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333333
No 146
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=68.79 E-value=21 Score=29.02 Aligned_cols=43 Identities=9% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
-+.+..|++.+..|..+++.|..++..+..+++.++..++.++
T Consensus 86 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~ 128 (129)
T cd00890 86 EEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQLQ 128 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677777777888888888888888888888888777664
No 147
>PRK00295 hypothetical protein; Provisional
Probab=68.79 E-value=36 Score=26.49 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+--+|+.+..|...+-+..+++.++.+.+..+..++..+..
T Consensus 14 la~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00295 14 QAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMVG 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34577888888888888888999999999999999988873
No 148
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.77 E-value=63 Score=27.44 Aligned_cols=74 Identities=18% Similarity=0.406 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHHHHhhhhchHHHHHh-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 241 LHGYPRDQIAKLKAKRRTLKNRGYAQNC-RSKR--------LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 241 L~GLSkeEv~~LKQrRRTLKNRGYAQnC-RkKR--------Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|.+||.+|+..|=+--..+.. |+.+. -.+. +.+...|...+-.++.+++.++.++.....+...++..|
T Consensus 1 L~~lS~~eL~~Ll~d~~~l~~--~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~ 78 (150)
T PF07200_consen 1 LQDLSTEELQELLSDEEKLDA--FVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEY 78 (150)
T ss_dssp GGS-TTHHHHHHHHH-HHHHH--HGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHcCHHHHHH--HHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777665555543 33222 1111 234444555555566677777777777777777777777
Q ss_pred HHHHh
Q psy4245 312 EIVMR 316 (328)
Q Consensus 312 e~L~~ 316 (328)
..+.+
T Consensus 79 ~~k~~ 83 (150)
T PF07200_consen 79 QEKEQ 83 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 149
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=68.67 E-value=25 Score=29.43 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
...+.|...+..|+.++..+..+.+++..+....+.++..|.+.
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777788888888888888888888888888888777653
No 150
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=68.39 E-value=21 Score=28.96 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.9
Q ss_pred CCCCHHHHHHH
Q psy4245 242 HGYPRDQIAKL 252 (328)
Q Consensus 242 ~GLSkeEv~~L 252 (328)
.|+|-+++..+
T Consensus 56 ~G~~l~ei~~~ 66 (102)
T cd04775 56 GGLPLEEIAGC 66 (102)
T ss_pred CCCCHHHHHHH
Confidence 35665555543
No 151
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=68.32 E-value=24 Score=29.73 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=20.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 263 GYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 263 GYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
||+..|... .++..++.+...|.++...|+.|++.+..+.|.+..+
T Consensus 48 ~~~~~~~l~--~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~ 93 (117)
T COG2919 48 GAADVLQLQ--RQIAAQQAELEKLSARNTALEAEIKDLKDGRDYIEER 93 (117)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 444444332 2333444444444444444444444444443333333
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=67.82 E-value=24 Score=33.49 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+|++.|+.|+..|+-++|.+.-+++++.+.-..+-..++.+.+
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777777777766655555555555544
No 153
>PRK02224 chromosome segregation protein; Provisional
Probab=67.81 E-value=47 Score=35.62 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRL 273 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRL 273 (328)
++..++..|..+|++.....=+..++
T Consensus 614 ~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 614 KREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666666555555554
No 154
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=67.76 E-value=24 Score=35.55 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.+...+.+|.++++++..++..++..++.+
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555555555544
No 155
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.63 E-value=44 Score=32.77 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+..++||.+...++.+++.|..|++++..+++.+--++.+|..
T Consensus 156 ~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 156 KELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 4455666666666666777777777766666655555555543
No 156
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=67.53 E-value=25 Score=29.43 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR-------QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~-------~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+-++.+++.+|+.++. +|+-|+--+==++-++.. ..++.....|..+++.|..+++++..-++.++.++..
T Consensus 35 R~Y~~~~l~~l~~I~~-lr~~G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~ 112 (118)
T cd04776 35 RVYSRRDRARLKLILR-GKRLGFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAEER 112 (118)
T ss_pred cccCHHHHHHHHHHHH-HHHCCCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999987 888777532222212111 1122333446666666666666666666655555544
No 157
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.35 E-value=62 Score=34.12 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
.+..|+++...++.++.+++.++..+.+++..++.+++.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~ 460 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333333
No 158
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=67.12 E-value=41 Score=28.18 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAK 255 (328)
Q Consensus 242 ~GLSkeEv~~LKQr 255 (328)
.|+|-++|..+=+.
T Consensus 56 ~G~sL~eI~~~l~~ 69 (126)
T cd04785 56 LGFSLEEIRALLAL 69 (126)
T ss_pred CCCCHHHHHHHHhh
Confidence 57888887776543
No 159
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=67.04 E-value=40 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
-|+|-++|..+-.
T Consensus 56 lG~sL~eI~~~l~ 68 (127)
T TIGR02047 56 LDMSLAEIRQLLR 68 (127)
T ss_pred cCCCHHHHHHHHH
Confidence 5888888877654
No 160
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.02 E-value=64 Score=32.09 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.-++.+.+++.+|..+-+...|-...-.-+ .+..+|-.....+..+.+.+..++.++..+|+.+-.+++.|+.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888866655544332221111 2333344444445555555555555555555555555555443
No 161
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=66.99 E-value=39 Score=30.32 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
..|+.++..+..-++.|+.|+..+.-+.+.+..|+.+|
T Consensus 133 ~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 133 KDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 162
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=66.64 E-value=15 Score=28.99 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
++.+++..|+.+++--++-|+. .+.+.++..|.++...|+++++.|++++
T Consensus 39 y~~~dv~~l~~i~~L~~d~g~~----l~~i~~~l~l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 39 YSERDIERLRRIQRLTQELGVN----LAGVKRILELEEELAELRAELDELRARL 88 (91)
T ss_pred ECHHHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777776544434432 2233444445555555666665555544
No 163
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=66.46 E-value=67 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=36.1
Q ss_pred HHHHhHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 264 YAQNCRSKRL-HQRQELEVTNKHLQQQLQKM--KSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 264 YAQnCRkKRL-qq~~~LE~E~~~L~~Ele~L--k~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
||..-+..++ +...+.+.-+..++.+++.| +.++.++.-++..++-++..|...
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5554444444 33445566777777777777 777788888888877777776544
No 164
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=66.40 E-value=33 Score=26.56 Aligned_cols=34 Identities=12% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
|-.++.+|..++..|+.++...+.|-..-.+|++
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 165
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.08 E-value=15 Score=37.02 Aligned_cols=51 Identities=16% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
..|..+|+|++.. ..-++++..|..+.+.+..+++.|+.|...+.+++...
T Consensus 13 ~v~~~l~~R~~~~---~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 13 LVKESLKARGLSV---DIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHhcCCCh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777421 11267778888888888888888888887777777554
No 166
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=66.00 E-value=31 Score=30.75 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+||+-...+..+++.++.+.+++.++.+.++.++..-.+
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQ 81 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 677777778888888888888888888877777665444
No 167
>PLN03217 transcription factor ATBS1; Provisional
Probab=65.98 E-value=31 Score=29.13 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=23.1
Q ss_pred CCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH
Q psy4245 223 LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR 276 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~ 276 (328)
+||||||..+ |--|..+|- ++++ ||+.++....|=|++.
T Consensus 16 risddqi~dL-vsKLq~llP--------e~r~------~r~s~k~saskvLqEt 54 (93)
T PLN03217 16 RISEDQINDL-IIKLQQLLP--------ELRD------SRRSDKVSAARVLQDT 54 (93)
T ss_pred CCCHHHHHHH-HHHHHHHCh--------HHHh------hhccccccHHHHHHHH
Confidence 8999999887 444444442 1111 4555666666666554
No 168
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=65.82 E-value=30 Score=33.06 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQI 300 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl 300 (328)
.++..|+.|+++|+..+.+|
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444
No 169
>cd04781 HTH_MerR-like_sg6 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 6) with at least two conserved cysteines present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, an
Probab=65.66 E-value=21 Score=29.54 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=15.4
Q ss_pred CChhHhhcccHHHHHHhc--CCCCHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKL--HGYPRDQIAKLK 253 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL--~GLSkeEv~~LK 253 (328)
|++++|..+.. . +.| -|+|-++|..+=
T Consensus 38 Y~~~~l~~l~~--I-~~lr~~G~~L~eI~~~l 66 (120)
T cd04781 38 YDPQVLDRLAL--I-ALGRAAGFSLDEIQAML 66 (120)
T ss_pred cCHHHHHHHHH--H-HHHHHcCCCHHHHHHHH
Confidence 56666666532 1 222 478877776654
No 170
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=65.55 E-value=56 Score=27.60 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=39.4
Q ss_pred CChhHhhcccHHHHHHhc-CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKL-HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL-~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
|+++++..+ +-...+- -|+|-+||..+=+...... ..|.. . ...|+.+++.|..+++++.+
T Consensus 39 Y~~~~~~~l--~~I~~lr~~G~sL~eI~~~l~~~~~~~-----~~~~~----~-------~~~l~~~~~~l~~~i~~l~~ 100 (133)
T cd04787 39 YSEKDLSRL--RFILSARQLGFSLKDIKEILSHADQGE-----SPCPM----V-------RRLIEQRLAETERRIKELLK 100 (133)
T ss_pred CCHHHHHHH--HHHHHHHHcCCCHHHHHHHHhhhccCC-----CcHHH----H-------HHHHHHHHHHHHHHHHHHHH
Confidence 455655554 1111211 6888888877654322211 11211 1 12345556666666666666
Q ss_pred HHHHHHHHHHHHHhcc
Q psy4245 303 ERNHYKKQYEIVMRNK 318 (328)
Q Consensus 303 Erd~yK~K~e~L~~~~ 318 (328)
-++.+..+++......
T Consensus 101 ~~~~l~~~~~~~~~~~ 116 (133)
T cd04787 101 LRDRMQQAVSQWQQMP 116 (133)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 6666666666655443
No 171
>PRK04325 hypothetical protein; Provisional
Probab=65.51 E-value=29 Score=27.40 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+--+|+.+..|-..+-+..+++.++.+.+..+..|+..+...+
T Consensus 18 lAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~~~ 60 (74)
T PRK04325 18 LAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANPDA 60 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3457888888999999999999999999999999998886443
No 172
>PRK14139 heat shock protein GrpE; Provisional
Probab=65.49 E-value=20 Score=33.07 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
++...|+.++..|+.+++.|+...-++.-|.+.||.+.++
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~k 71 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQE 71 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666677777777766777777766666554
No 173
>KOG4460|consensus
Probab=65.37 E-value=50 Score=36.00 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=48.8
Q ss_pred hHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 262 RGYAQNCRSKRL--HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 262 RGYAQnCRkKRL--qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
|-+-+-||+|+. |.+..++.|.+.++.--++|.+..++....-+.+.++|++|.+.-.
T Consensus 588 rH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 588 RHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 667788999874 5677888888888888899999999999999999999999987643
No 174
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=65.33 E-value=53 Score=34.36 Aligned_cols=94 Identities=13% Similarity=0.217 Sum_probs=52.6
Q ss_pred ChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhh--hhchHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 225 SDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRT--LKNRGYAQNCRSKRLHQ-----RQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRT--LKNRGYAQnCRkKRLqq-----~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
|.++|-+| ...++..+.-||..+...|=.+|-. .=.|..+.==.+++... +..|+....+++.++.++.-++
T Consensus 398 t~~~i~~m-l~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 398 TAESIEEM-LSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred CHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56667666 5556666666666666666666543 34566655444443322 2334444455556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhccc
Q psy4245 298 KQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 298 ~rl~rErd~yK~K~e~L~~~~f 319 (328)
+.+......+|..||+--+..|
T Consensus 477 ~~l~~~Tr~Lq~~iE~~ISk~y 498 (507)
T PF05600_consen 477 DALVERTRELQKQIEADISKRY 498 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 6666666666666665444333
No 175
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=65.25 E-value=24 Score=33.21 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=42.0
Q ss_pred hhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 226 DDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 226 DEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
-.++.......||.-|+.+-..++..+...|+.|-||--+-+|.++|+..
T Consensus 104 ~~~~d~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLdyD~~k~k~~k 153 (223)
T cd07592 104 KDSLDDNVKQNFLDPLQQLQDKDLKEINHHRKKLEGRRLDYDYKKRKQGK 153 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44555556778888888888899999999999999999999999998753
No 176
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=65.25 E-value=54 Score=31.83 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q psy4245 303 ERNHYKKQYEIVMR 316 (328)
Q Consensus 303 Erd~yK~K~e~L~~ 316 (328)
|+..+|.+++.|..
T Consensus 277 Ev~~Lk~~~~~Le~ 290 (325)
T PF08317_consen 277 EVKRLKAKVDALEK 290 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555544
No 177
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=65.21 E-value=23 Score=33.01 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 263 GYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 263 GYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+.-..|++||++-. ..+++.|+++..+|..+++.-..|+|.|+
T Consensus 114 L~eEr~Ry~rLQqss---------D~~lD~Lr~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 114 LSEERARYQRLQQSS---------DSELDALRQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 455677888888765 37788888888888888888888988886
No 178
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=64.72 E-value=24 Score=37.69 Aligned_cols=20 Identities=10% Similarity=0.059 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhhchHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQ 266 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQ 266 (328)
.+...|.+....||......
T Consensus 150 kE~eeL~~~~~~Le~e~~~l 169 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQL 169 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555333
No 179
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=64.57 E-value=58 Score=27.61 Aligned_cols=58 Identities=17% Similarity=0.354 Sum_probs=34.9
Q ss_pred hhchHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 259 LKNRGYAQNCRSKRL---HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 259 LKNRGYAQnCRkKRL---qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+|+...+..|..-+. +...+++.++...+.+++.|+.++...+..++ .|..|+.|...
T Consensus 63 ~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~-~k~eyd~La~~ 123 (139)
T PF05615_consen 63 LKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ-NKEEYDALAKK 123 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 344555554443321 33455566666677777777777777666554 45588888765
No 180
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=64.45 E-value=37 Score=28.73 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=26.4
Q ss_pred hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 259 LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 259 LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
+.-|..|+==.+=|..+++.|+.=+.+|..+++.-+++++++...+
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3346677766666666666666555555555555555555555444
No 181
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.44 E-value=19 Score=27.60 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYK--KQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK--~K~e~L~~ 316 (328)
.+..+...++.++++++.|..+|..|+..+. .+++++.+
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar 68 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4444444555555555555555555555443 34444444
No 182
>KOG3119|consensus
Probab=64.44 E-value=26 Score=33.58 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
...+..||.|+..|+.++++|++|+..|++-.-.+
T Consensus 221 ~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 221 AHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45568899999999999999999999998766554
No 183
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.38 E-value=1e+02 Score=28.23 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=14.9
Q ss_pred hhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchH
Q psy4245 229 LMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 229 LVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRG 263 (328)
++.+-++|+..-|... +..+..+...+++++.+.
T Consensus 28 ~l~q~irem~~~l~~a-r~~lA~~~a~~k~~e~~~ 61 (219)
T TIGR02977 28 MIRLIIQEMEDTLVEV-RTTSARTIADKKELERRV 61 (219)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4555555555443211 123444444555555443
No 184
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=64.37 E-value=49 Score=27.69 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=8.7
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
-|+|-+||.++=+
T Consensus 56 ~G~sL~eI~~~l~ 68 (127)
T TIGR02044 56 VGFSLEECKELLN 68 (127)
T ss_pred CCCCHHHHHHHHH
Confidence 5787777776543
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.24 E-value=58 Score=30.70 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhh---hchHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 246 RDQIAKLKAKRRTL---KNRGYAQNCRSKR-----LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 246 keEv~~LKQrRRTL---KNRGYAQnCRkKR-----Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
++|+..||.-=..| +++.|||+--..| +..++.|..++..|..+.+.|++...+|..+...++.++
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 56666666655553 3455555444444 345677888888888888888888888877888777765
No 186
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=64.22 E-value=22 Score=35.73 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
....+++++..+.++.+++..++.++..|....
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555554443
No 187
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.11 E-value=1e+02 Score=28.40 Aligned_cols=39 Identities=15% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
..|+.|+..|+.++.+|+.+++.|..|...++.+++.+.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777777766666665554
No 188
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.08 E-value=96 Score=26.81 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhhhchH
Q psy4245 246 RDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRG 263 (328)
++++.+|...|..+-+=.
T Consensus 36 ~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 36 QEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355555555555554433
No 189
>PRK02224 chromosome segregation protein; Provisional
Probab=63.96 E-value=65 Score=34.60 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+++..|+.++..++.+++.+..+++.+..+++.++.++..|.
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le 292 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELE 292 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666555554
No 190
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=63.93 E-value=9.5 Score=30.49 Aligned_cols=45 Identities=9% Similarity=0.305 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 267 NCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 267 nCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+||.- +.....++..+.+-+.+++.|+.+++..+.-+..||.+|+
T Consensus 39 ~ar~~-i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~~ 83 (83)
T PF07544_consen 39 KARAA-IRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERVM 83 (83)
T ss_pred HHHHH-HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45554 5666667777888888899999888888888888888763
No 191
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=63.75 E-value=54 Score=34.85 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy4245 301 VEERNHYKKQYEIVMRN 317 (328)
Q Consensus 301 ~rErd~yK~K~e~L~~~ 317 (328)
..||+.+|.++++|...
T Consensus 509 l~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 509 LEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46889999999998754
No 192
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.73 E-value=49 Score=36.13 Aligned_cols=91 Identities=18% Similarity=0.193 Sum_probs=63.3
Q ss_pred HhhcccHHHHHHhc----CCCCHHHHHHHHHHHhhhhchHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 228 LLMCLSVRELNKKL----HGYPRDQIAKLKAKRRTLKNRGYAQN-CRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 228 eLVsmSVrELNrlL----~GLSkeEv~~LKQrRRTLKNRGYAQn-CRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
.....+..|.-++| .-|.++-+.+...-|.-++.|+-.+. ...+-++.+.+|++++..|+...++|....+++..
T Consensus 528 k~~~p~~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 528 KSSSPSPQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556655555 23555556666666777777765543 44444677788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHhcc
Q psy4245 303 ERNHYKKQYEIVMRNK 318 (328)
Q Consensus 303 Erd~yK~K~e~L~~~~ 318 (328)
.-+.+.+|++.+.+..
T Consensus 608 ~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 608 KQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876653
No 193
>KOG1962|consensus
Probab=63.73 E-value=56 Score=31.16 Aligned_cols=47 Identities=9% Similarity=0.211 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
++.+..+++.+.++.+.+.|+++.+.+.+|-|.+..+++.|+..+-+
T Consensus 165 ~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 165 TELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 33444455555566777788888888888888888888888876544
No 194
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=63.42 E-value=52 Score=34.66 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..|+.+..++..++++|+.|+.++...++.++.+++.+..
T Consensus 105 ~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~~ 144 (472)
T TIGR03752 105 QAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVLT 144 (472)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456667777888888888888888888888888776544
No 195
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=63.34 E-value=26 Score=34.79 Aligned_cols=83 Identities=23% Similarity=0.221 Sum_probs=46.6
Q ss_pred ChhHhhcccHHHHHHhc-CCCC--------HHH--HHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 225 SDDLLMCLSVRELNKKL-HGYP--------RDQ--IAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKM 293 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL-~GLS--------keE--v~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~L 293 (328)
.+++|-=+|++||-... ...+ .-+ +.+|.... .=|++-.++..+|+.++..|.+++++.
T Consensus 58 ~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~RL~~EL----------~~Rk~L~~~~~el~~~k~~l~~~~~~k 127 (355)
T PF09766_consen 58 KYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLARLEFEL----------EQRKRLEEQLKELEQRKKKLQQENKKK 127 (355)
T ss_pred CCCCCcCccHHHHHHhChhhccccccCCCChHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667778889998865 2121 112 23333221 114455556666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 294 KSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+..+..+...+..++....-++..
T Consensus 128 ~~~L~~l~~~L~~l~~a~~plq~~ 151 (355)
T PF09766_consen 128 KKFLDSLPPQLKSLKKAAKPLQEY 151 (355)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666666666666666665555543
No 196
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.31 E-value=44 Score=31.83 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=40.9
Q ss_pred HhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH
Q psy4245 228 LLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR 276 (328)
Q Consensus 228 eLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~ 276 (328)
+...+-..+||.-|+-+=..+++.+...|+.|-||-=.-+|.+.|+...
T Consensus 125 ~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K~~~~ka 173 (242)
T cd07600 125 EQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTARAELKSA 173 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344446899999987777899999999999999999999999988644
No 197
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=62.81 E-value=1.1e+02 Score=27.88 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQ-----LQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~E-----le~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
.+....|...+.++..|.. +||.....+..+ +=+=++|++++...+..+.+++..+....-.
T Consensus 84 ~~R~~lLe~~~~~l~~ri~-------------eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~ 150 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLD-------------ELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLEPIYIT 150 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3556667777777665333 333333333222 2233456666666666666666665554433
Q ss_pred C
Q psy4245 321 S 321 (328)
Q Consensus 321 ~ 321 (328)
.
T Consensus 151 ~ 151 (175)
T PRK13182 151 P 151 (175)
T ss_pred C
Confidence 3
No 198
>PRK14162 heat shock protein GrpE; Provisional
Probab=62.72 E-value=24 Score=32.73 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+..|+.+...|+.+++.|+....++.-|.+.|+.|.+
T Consensus 41 ~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~ 77 (194)
T PRK14162 41 VEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYA 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555544
No 199
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=62.66 E-value=31 Score=30.10 Aligned_cols=47 Identities=21% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
-+++.+||..+.+|-+|+..|++.+..+..|-..+.-..+.|+....
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 37888888888888888888888888877777777777777766543
No 200
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=62.64 E-value=40 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.|..+++.|.+++.++..-++.++.+++
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 79 LLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666666666666655543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.57 E-value=27 Score=33.10 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
...+|...+..|+.|+.+|+=+++++..+++.++++-..||..+++
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999999988887663
No 202
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=62.53 E-value=67 Score=24.88 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
+..|..++..|..++++|..++..+..+....|.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~ 38 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKE 38 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555444443
No 203
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=62.35 E-value=28 Score=28.23 Aligned_cols=17 Identities=6% Similarity=0.059 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~r 302 (328)
|..+++.+.++++++.+
T Consensus 81 l~~~~~~l~~~i~~L~~ 97 (99)
T cd04772 81 VDAAHALLQRYRQQLDQ 97 (99)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444433
No 204
>KOG4571|consensus
Probab=61.84 E-value=55 Score=32.61 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=44.7
Q ss_pred ChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 225 SDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
+.+.+...-+.. |.. -.+|-|||.|.=+ -+| +.+++.||++|.+|+.+.+.|.+|+..+++-+
T Consensus 223 ~~~~~~~rkr~q-nk~-------AAtRYRqKkRae~--E~l-------~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli 285 (294)
T KOG4571|consen 223 TPEKKLRRKRQQ-NKA-------AATRYRQKKRAEK--EAL-------LGELEGLEKRNEELKDQASELEREIRYLKQLI 285 (294)
T ss_pred CchHHHHHHHHH-hHH-------HHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666653333 322 3455666655432 222 67899999999999999999999999998765
Q ss_pred HH
Q psy4245 305 NH 306 (328)
Q Consensus 305 d~ 306 (328)
-+
T Consensus 286 ~e 287 (294)
T KOG4571|consen 286 LE 287 (294)
T ss_pred HH
Confidence 43
No 205
>KOG2264|consensus
Probab=61.73 E-value=24 Score=38.57 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+|+++...+.+|++.+.+-+.|+.+++-|+.+-+..++.|..
T Consensus 108 eI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 108 EIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344444444445555555555555555555555555555544
No 206
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.69 E-value=28 Score=28.87 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.++..|..|.+.|+.|++....++..+|-
T Consensus 30 ~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 30 KQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777776653
No 207
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=61.68 E-value=49 Score=26.14 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.|=.-..+|+.+-..|+.+.+.+..|++.++.|.+.-++
T Consensus 10 e~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~ 49 (65)
T TIGR02449 10 EHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQ 49 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444556677777777777788888888888776554
No 208
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=61.56 E-value=75 Score=33.06 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHhh---hhchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 251 KLKAKRRT---LKNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 251 ~LKQrRRT---LKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+|+++++- +.++...+.=...+| +++.+||.++..+..++.....++.++.+.++.+-.++++|..
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 44444443 334444555555555 6788888888888888888888888887777777777776653
No 209
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=61.53 E-value=25 Score=35.33 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.|+.++..|+.+.+.+..++.++.+|+..+|..+++|..-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 26 ELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455666666667777777777777777777777777554
No 210
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=61.50 E-value=39 Score=28.53 Aligned_cols=44 Identities=9% Similarity=0.250 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
-+.+..|++.+..|...++.|..+++.+.++++.+...++.|..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677788888888888888888888888888888888888765
No 211
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=61.31 E-value=38 Score=27.70 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=45.4
Q ss_pred CCChhHhhcccHHHHHHhcCCCCHHHHHH-HHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 223 LISDDLLMCLSVRELNKKLHGYPRDQIAK-LKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL~GLSkeEv~~-LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
-|+-|.|+.++-+++...|+.++.+.+.. ||-----++++.++.=....+-.-.++++.--..-..+++.-++++-...
T Consensus 19 ~f~F~dl~~l~~~~l~~ll~~v~~~~la~ALkga~~e~~~~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~ 98 (110)
T PF01706_consen 19 MFTFDDLVRLDDRDLQKLLREVDPDDLALALKGASEELREKILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIV 98 (110)
T ss_dssp CS-GGGGGGS-HHHHHHHHTTS-HHHHHHHHCTS-HHHHHHHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHHHHHHHHHHCCHhHHHHHHccCCHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 48999999999999999999998888653 34333336666665443333333333343333334455665555555554
Q ss_pred HHH
Q psy4245 302 EER 304 (328)
Q Consensus 302 rEr 304 (328)
++.
T Consensus 99 r~l 101 (110)
T PF01706_consen 99 RRL 101 (110)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 212
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=61.26 E-value=40 Score=29.05 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=7.2
Q ss_pred HHHHHHhc--CCCCHH
Q psy4245 234 VRELNKKL--HGYPRD 247 (328)
Q Consensus 234 VrELNrlL--~GLSke 247 (328)
.|++.++| .+|+.+
T Consensus 6 iRdieRLL~r~~Lp~~ 21 (114)
T PF10153_consen 6 IRDIERLLKRKDLPAD 21 (114)
T ss_pred HHHHHHHHcCCCCCHH
Confidence 45556666 345543
No 213
>PRK14154 heat shock protein GrpE; Provisional
Probab=61.25 E-value=24 Score=33.25 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=6.1
Q ss_pred HHHHHHHHHhhhhc
Q psy4245 248 QIAKLKAKRRTLKN 261 (328)
Q Consensus 248 Ev~~LKQrRRTLKN 261 (328)
++..++++...+|+
T Consensus 60 el~~le~e~~elkd 73 (208)
T PRK14154 60 QLTRMERKVDEYKT 73 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 214
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=61.02 E-value=55 Score=30.52 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN---HYKKQYEIVMRN 317 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd---~yK~K~e~L~~~ 317 (328)
...+...-+.-.....|.+|.++|++|++++..+.. .++...+.|+..
T Consensus 58 ~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l 108 (276)
T PRK13922 58 REFVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566677777777777777777666 445666666553
No 215
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=60.94 E-value=21 Score=31.54 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|++++++|..|++++..++..-+.+++...+.
T Consensus 71 l~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777776665543
No 216
>KOG4657|consensus
Probab=60.77 E-value=80 Score=30.77 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.+|-.....+|++++.++++++.|.+-+..+..|.|.+|.=+.
T Consensus 82 ~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs 124 (246)
T KOG4657|consen 82 TEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIIS 124 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444555566777777777777777777777777776665443
No 217
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=60.66 E-value=40 Score=28.45 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
..++..|-.....|+.+++.|..++..+...+..++.-++.|.....
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566667777788888888888888888888888888887775543
No 218
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=60.51 E-value=42 Score=33.30 Aligned_cols=56 Identities=23% Similarity=0.229 Sum_probs=35.3
Q ss_pred hHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 262 RGYAQNCRSKRL----HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 262 RGYAQnCRkKRL----qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..-.......|| .++..|+.+...|+.++++|..+++.-+..++.+..+++.|...
T Consensus 85 ~~~~H~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a 144 (355)
T PF09766_consen 85 EDDEHQLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKA 144 (355)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555566664 45666666666666666666666666666666666666666543
No 219
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=60.35 E-value=43 Score=29.86 Aligned_cols=13 Identities=23% Similarity=0.302 Sum_probs=8.4
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
.|+|-++|..+=+
T Consensus 57 ~G~sL~eI~~ll~ 69 (172)
T cd04790 57 AGVSLEDIRSLLQ 69 (172)
T ss_pred cCCCHHHHHHHHh
Confidence 5788777666543
No 220
>PRK14143 heat shock protein GrpE; Provisional
Probab=60.31 E-value=28 Score=33.24 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhch
Q psy4245 247 DQIAKLKAKRRTLKNR 262 (328)
Q Consensus 247 eEv~~LKQrRRTLKNR 262 (328)
+++..+++....+|||
T Consensus 74 ~el~~l~~e~~elkd~ 89 (238)
T PRK14143 74 QELESLKQELEELNSQ 89 (238)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777777764
No 221
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=60.24 E-value=46 Score=27.36 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAK 255 (328)
Q Consensus 242 ~GLSkeEv~~LKQr 255 (328)
.|+|-+||..+-+.
T Consensus 55 ~G~sl~eI~~~l~~ 68 (112)
T cd01282 55 AGLTLEEIREFLPC 68 (112)
T ss_pred cCCCHHHHHHHHHH
Confidence 57888887776543
No 222
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.99 E-value=39 Score=35.58 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
.....++++|++|..|+++|+...++.+.+
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 333344444444444444444444443333
No 223
>KOG2077|consensus
Probab=59.82 E-value=41 Score=36.85 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 295 SEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 295 ~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.|++++.-||++||.|+=.|+..
T Consensus 399 vEMaRVLMeRNqYKErLMELqEa 421 (832)
T KOG2077|consen 399 VEMARVLMERNQYKERLMELQEA 421 (832)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 35677888999999999888754
No 224
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=59.82 E-value=68 Score=30.32 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 235 RELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLH--------QRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 235 rELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLq--------q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
.|+|.++. ||.-||..-|-+++..-+...+...+. +++..+.|......+.+-|+.++..+..|+..
T Consensus 24 ~E~~~K~~-----Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~ 98 (202)
T PF06818_consen 24 AEVNQKDS-----EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAE 98 (202)
T ss_pred HHHHHHHh-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHH
Confidence 34555443 777777766666555555554444433 44445555555666677777777777777777
Q ss_pred HHHHHHHH
Q psy4245 307 YKKQYEIV 314 (328)
Q Consensus 307 yK~K~e~L 314 (328)
++..+..+
T Consensus 99 Lr~~l~~~ 106 (202)
T PF06818_consen 99 LREELACA 106 (202)
T ss_pred HHHHHHhh
Confidence 77777765
No 225
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=59.69 E-value=25 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+...|+++++.|+.+++.+..+++.++.+++.|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566666666666666666666655544
No 226
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=59.67 E-value=8.3 Score=40.43 Aligned_cols=28 Identities=7% Similarity=0.387 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+|++|++|+++|+++++.++.++++...
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5666666666666666666655555443
No 227
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=59.56 E-value=51 Score=28.33 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
.|+|-++|..+=+
T Consensus 57 ~G~sL~eI~~~l~ 69 (140)
T PRK09514 57 LGFTLEEIRELLS 69 (140)
T ss_pred cCCCHHHHHHHHH
Confidence 5888777777654
No 228
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.44 E-value=26 Score=30.35 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.++..|+.|+..++..+++....+.++..........++
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333
No 229
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.27 E-value=35 Score=34.29 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.++..|+.++..|..+++++++|+.++..|++.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467777888888888888888888888888877753
No 230
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=59.22 E-value=27 Score=27.73 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK--KQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK--~K~e~L~~ 316 (328)
...+..++..++.+.++|+.|..+|.-|...++ .+++.+.+
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe~iA~ 79 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIERIAR 79 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 445556666777777777777777777776665 34555444
No 231
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=59.19 E-value=44 Score=31.74 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=40.9
Q ss_pred hHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
++++......|+.-|..+...+++.+-..|+.|.||--+-+|.++|+..
T Consensus 105 ~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~K~r~~k 153 (223)
T cd07613 105 DSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGK 153 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCC
Confidence 3444455667777788888899999999999999999999999999875
No 232
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.15 E-value=50 Score=32.34 Aligned_cols=55 Identities=24% Similarity=0.241 Sum_probs=35.2
Q ss_pred hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 259 LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 259 LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
.|+..-+|+==..-..+++.+-.+...++.++++++.|+.++..+++.++.++..
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666566666666666666666666666666666666666666655543
No 233
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=59.14 E-value=23 Score=29.83 Aligned_cols=42 Identities=33% Similarity=0.431 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.|.+--|.|-.-|++.+.+|..++.++..|++.||.++-.+-
T Consensus 8 ~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d 49 (96)
T PF11365_consen 8 RQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLD 49 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 355666778888999999999999999999999999886554
No 234
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.09 E-value=95 Score=27.63 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..+-.+...|..++..|+.|+..+.++.+..+.++..|..
T Consensus 62 ~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 62 EELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555566666666666666666665544
No 235
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=58.95 E-value=76 Score=28.59 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.++.+++.|..+++.|..++.++.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554
No 236
>PRK14148 heat shock protein GrpE; Provisional
Probab=58.81 E-value=33 Score=31.94 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
..|+.+...|+.+++.|+....++.-|.+.|+.+.
T Consensus 43 ~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 43 ERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 237
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=58.69 E-value=41 Score=27.13 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.-|+..++.|+.+++++..+++.+...+..+...++.++
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555666666666666666666666666666654
No 238
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=58.56 E-value=53 Score=31.11 Aligned_cols=65 Identities=12% Similarity=0.249 Sum_probs=47.1
Q ss_pred hhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH------HHHHHHHHHHHHHH
Q psy4245 226 DDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR------QELEVTNKHLQQQL 290 (328)
Q Consensus 226 DEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~------~~LE~E~~~L~~El 290 (328)
-.++.......|+.-|+.+-..+++.+-..|+.|-||--+-+|.+.|+... ..+|.|+...+.+.
T Consensus 109 ~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF 179 (229)
T cd07594 109 EREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDACKTRVKKAKSAEAIEQAEQDLRVAQSEF 179 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchhhhHHHHHHHHHHH
Confidence 344444556677777777777899999999999999999999999998744 24555555444333
No 239
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=58.49 E-value=65 Score=27.30 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAK 255 (328)
Q Consensus 242 ~GLSkeEv~~LKQr 255 (328)
.|+|-+||..+=+.
T Consensus 57 ~G~sl~eI~~~l~~ 70 (131)
T TIGR02043 57 LGFTLDEIKELLSI 70 (131)
T ss_pred cCCCHHHHHHHHHh
Confidence 57887777776653
No 240
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=58.29 E-value=1.1e+02 Score=30.18 Aligned_cols=10 Identities=40% Similarity=0.478 Sum_probs=4.0
Q ss_pred CCCCCCCCCC
Q psy4245 116 PDTPPGSNSP 125 (328)
Q Consensus 116 p~tpp~~~s~ 125 (328)
|..-|+|+|-
T Consensus 16 ~~~~~~s~~~ 25 (269)
T PF05278_consen 16 PRSRPVSRSI 25 (269)
T ss_pred CccCCCCCcc
Confidence 3333444443
No 241
>PRK11020 hypothetical protein; Provisional
Probab=58.29 E-value=72 Score=28.08 Aligned_cols=61 Identities=13% Similarity=0.305 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIK-QIVEERNHY 307 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~-rl~rErd~y 307 (328)
+.||.+|-++=-.++.+.+|..-|-- ..-+..+++|+..|..+|++|+.... .+.+|...+
T Consensus 4 K~Eiq~L~drLD~~~~Klaaa~~rgd-~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l 65 (118)
T PRK11020 4 KNEIKRLSDRLDAIRHKLAAASLRGD-AEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKL 65 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777776666666777666544 34556667777777777777765543 344444433
No 242
>KOG3863|consensus
Probab=58.06 E-value=19 Score=38.73 Aligned_cols=83 Identities=17% Similarity=0.289 Sum_probs=55.4
Q ss_pred cccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHH-HhHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 231 CLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQ-NCRSK---RL---HQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 231 smSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQ-nCRkK---RL---qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
-.+|++ .-+|+.++--.++.+.---++..+=. +-|.| |+ ..+..=-+.+..|+.++++|++|+++|.+|
T Consensus 458 PF~vd~----IinLp~~dFne~ls~~~lte~QLslIrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E 533 (604)
T KOG3863|consen 458 PFSVDE----IINLPVDDFNEMLSKYKLTEEQLSLIRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE 533 (604)
T ss_pred CCchHH----hcCCcHHHHHHHHHhcccCHHHHHHhhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455553 45788888888885555555544432 22222 11 112222346777999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy4245 304 RNHYKKQYEIVMRN 317 (328)
Q Consensus 304 rd~yK~K~e~L~~~ 317 (328)
+++++.-+..+...
T Consensus 534 r~~~d~~L~~~kqq 547 (604)
T KOG3863|consen 534 RDELDSTLGVMKQQ 547 (604)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877653
No 243
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=57.91 E-value=35 Score=34.03 Aligned_cols=43 Identities=14% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+.++|..+..|+..++.+......+.+++..++.+++.|...
T Consensus 145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667777888888888888888888888888888888888654
No 244
>PHA02562 46 endonuclease subunit; Provisional
Probab=57.88 E-value=57 Score=32.83 Aligned_cols=31 Identities=13% Similarity=0.258 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.|+.++..|+.+...+..++.++..+++.++
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~ 392 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIV 392 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 245
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.79 E-value=70 Score=28.45 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+..|+.++..+..++..|..|+.-+..|++.+.+.++...
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555544
No 246
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=57.71 E-value=90 Score=29.72 Aligned_cols=33 Identities=9% Similarity=0.264 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+.++..++.+++.++.+++.+..+++.++..+
T Consensus 149 l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 149 ILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444333
No 247
>KOG0612|consensus
Probab=57.60 E-value=79 Score=37.06 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhh--chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLK--NRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 248 Ev~~LKQrRRTLK--NRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
.+.++|..+-+|+ -+.-||.--+....+...++.++..|.+++..+++|++-+++..+..
T Consensus 473 ~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 473 TIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444 22333333333334445555566666666666666666666655555
No 248
>KOG0999|consensus
Probab=57.59 E-value=51 Score=35.98 Aligned_cols=64 Identities=33% Similarity=0.439 Sum_probs=44.6
Q ss_pred HHHHHhhhhchHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 252 LKAKRRTLKNRGYAQNCRSKR-LHQRQELEVTNKHLQQQLQKM----------KSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 252 LKQrRRTLKNRGYAQnCRkKR-Lqq~~~LE~E~~~L~~Ele~L----------k~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.+.|||||--.---..|--| ++.-.+||.|+..|+.++..| +-|+.++..|...++..++.+.
T Consensus 147 ~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~ 221 (772)
T KOG0999|consen 147 VEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAI 221 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667766655555566555 477889999999988877655 5567777777777777776553
No 249
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.58 E-value=35 Score=30.09 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhhchHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 248 QIAKLKAKRRTLKNRGYAQN-CRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQn-CRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|+..|-..+|+.+++...-+ =+..-..++.++...+...+.-+++|+.|+..=--|+..+|.+++.+.+
T Consensus 53 EL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~ 122 (131)
T PF04859_consen 53 ELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNR 122 (131)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555444333322 0111123344444444444444555555555555555555555555543
No 250
>PRK14155 heat shock protein GrpE; Provisional
Probab=57.55 E-value=22 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+.|+.+...|+.+++.|+....++.-|.+.||.|.+
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555555444
No 251
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=57.47 E-value=52 Score=31.39 Aligned_cols=28 Identities=21% Similarity=0.455 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.++.+|+.=+....+|||+.+.+|+.|.
T Consensus 33 eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 33 EQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677778889999999998887
No 252
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=57.44 E-value=17 Score=28.51 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.|+..|+.+|..|..+++++..|-..||+.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777777777777777777777654
No 253
>KOG0243|consensus
Probab=57.43 E-value=42 Score=38.39 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIK-------QIVEERNHYKKQYEIVM 315 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~-------rl~rErd~yK~K~e~L~ 315 (328)
.+-.++++||.++..++.++..+..... .+..+.+.+|.+++.-.
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~ 496 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN 496 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777666655 56666666666655443
No 254
>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic). This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.
Probab=57.30 E-value=16 Score=32.53 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=29.5
Q ss_pred CCChhHhhcccHHHHHHhc---------CCCCHHHHHHHHHHHh
Q psy4245 223 LISDDLLMCLSVRELNKKL---------HGYPRDQIAKLKAKRR 257 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL---------~GLSkeEv~~LKQrRR 257 (328)
+++.|+|..|+.+||-.+| +|++..+...||.++.
T Consensus 9 G~~l~~L~~m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~k 52 (135)
T TIGR01025 9 GYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRK 52 (135)
T ss_pred ccCHHHHHcCCHHHHHHHcCcccCcccccCCchhhHHHHHHHHH
Confidence 4789999999999999887 6788888888887764
No 255
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=57.26 E-value=83 Score=26.39 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=8.9
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
-|+|-+||..+=+
T Consensus 56 ~G~sL~eI~~~l~ 68 (127)
T cd01108 56 LGFSLEEIRELLA 68 (127)
T ss_pred cCCCHHHHHHHHH
Confidence 5788777776543
No 256
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=57.20 E-value=54 Score=27.31 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=9.1
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
-|||-++|..+=+
T Consensus 56 ~G~sL~eI~~~l~ 68 (126)
T cd04783 56 LGFTLDEIAELLE 68 (126)
T ss_pred cCCCHHHHHHHHh
Confidence 6888877776544
No 257
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.14 E-value=57 Score=26.89 Aligned_cols=73 Identities=11% Similarity=0.198 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 243 GYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 243 GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.++.+++..|..-++-+|.=|-.--= +-+-+.+.+|++.+..+...++.|..+...+...+..+..++..+..
T Consensus 37 ~~v~~eL~~l~~d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 37 EKALEELERLPDDTPVYKSVGNLLVK-TDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHcCCCcchhHHHhchhhhe-ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666655554433 33567778888888888888888888888888888888888887753
No 258
>PRK02119 hypothetical protein; Provisional
Probab=57.06 E-value=67 Score=25.38 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=36.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 269 RSKRLHQ-RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 269 RkKRLqq-~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|.-.|+. +--+|+.+..|...+-+..+++.++.+++..++.++..+...
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444433 345677888888888888888888888889999998887644
No 259
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=57.01 E-value=42 Score=34.63 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=39.6
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcc
Q psy4245 261 NRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSE------------IKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 261 NRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E------------~~rl~rErd~yK~K~e~L~~~~ 318 (328)
||.|--.|.++=-+.-..|...+..|+.-++.|+.. ++.+.++++..+..++.|..+.
T Consensus 200 ~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i 269 (424)
T PF03915_consen 200 NRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYI 269 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999998886666677777777777766666654 3446666666666666665543
No 260
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=56.86 E-value=36 Score=28.34 Aligned_cols=31 Identities=23% Similarity=0.041 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
..+++++.+|++++.+|+.|++-|++.....
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567777777788888887777666655443
No 261
>PRK14158 heat shock protein GrpE; Provisional
Probab=56.67 E-value=37 Score=31.54 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+..|+.+...|+.+++.|+....++.-|.+.|+.+.+
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544
No 262
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.62 E-value=37 Score=33.96 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhhhchH--------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 246 RDQIAKLKAKRRTLKNRG--------YAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRG--------YAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
-+|..+++.-|=-.|++. |+-+-..+|+--++.|=.|++-|..++..+..|+.-+..-+..||.-++.
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368888889998888875 66666777888899999999999999999999999999999999999995
No 263
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=56.59 E-value=41 Score=34.48 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=15.6
Q ss_pred HHhcCCCCHHHHHHHHHHHhhhh
Q psy4245 238 NKKLHGYPRDQIAKLKAKRRTLK 260 (328)
Q Consensus 238 NrlL~GLSkeEv~~LKQrRRTLK 260 (328)
|.-|.|.|-+|...|||.--+||
T Consensus 23 ~~~~~~~~~~e~~aLr~EN~~LK 45 (420)
T PF07407_consen 23 NHELEGVSIDENFALRMENHSLK 45 (420)
T ss_pred cccccccchhhhhhHHHHhHHHH
Confidence 45567777777777777655554
No 264
>PRK04406 hypothetical protein; Provisional
Probab=56.56 E-value=60 Score=25.86 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=38.8
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 268 CRSKRLH-QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 268 CRkKRLq-q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-|.-.|+ .+--+|+.+..|...+-+..+++.++.+++..++.++..+...
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~~ 61 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDSS 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444553 3456788888898999999999999999999999999887654
No 265
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=56.55 E-value=48 Score=31.43 Aligned_cols=49 Identities=14% Similarity=0.159 Sum_probs=39.1
Q ss_pred hHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
++++......|+.-|+.+-..++..+...|+.|.||--+-+|.++|+..
T Consensus 105 ~~~~~~v~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~K~r~~k 153 (223)
T cd07615 105 DSLDINVKQNFIDPLQLLQDKDLKEIGHHLKKLEGRRLDFDYKKKRQGK 153 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444445566666677677789999999999999999999999998854
No 266
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=56.29 E-value=38 Score=27.78 Aligned_cols=36 Identities=31% Similarity=0.384 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
...++||.|+..|...++ .+.++++=|.+++..+..
T Consensus 7 k~mkeLEqEkd~LLqgLe-------~~Er~r~Wy~~qL~~vq~ 42 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLE-------MEERERDWYQQQLQSVQE 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHH
Confidence 445555555555555554 455555555555555443
No 267
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=56.24 E-value=90 Score=27.93 Aligned_cols=61 Identities=20% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
....|+++|-.+.|=-+.-|. .|=-|.++.|. ..|+.|+++.+.+.+.+.+-.+..++.+|
T Consensus 102 ~~~ki~~i~~L~~NmhhllNe-yRPhQARetLi---~~me~Ql~~kr~~i~~i~~~~~~~~~~le 162 (162)
T PF05983_consen 102 YERKIEDIRLLFINMHHLLNE-YRPHQARETLI---MMMEEQLEEKREEIEEIRKVCEKAREVLE 162 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344999999999999999998 88888888775 34677777777777777777777776654
No 268
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=56.02 E-value=86 Score=28.16 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
..|..++..+..|+++.-.. -.++.+++..+..|..|+..|+-+...+...+..++.....|
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l------~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDL------EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666554332 233344444444444444444444444444444444444333
No 269
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.00 E-value=40 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.|-..-..|..+-+.|+.|++.+..|+..++.++.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444455666666777777777777776666653
No 270
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=56.00 E-value=55 Score=27.00 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~ 306 (328)
|+.+++.|+.++..+.+|.+.
T Consensus 23 LqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555666666665555555444
No 271
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=55.99 E-value=95 Score=33.17 Aligned_cols=65 Identities=18% Similarity=0.376 Sum_probs=42.4
Q ss_pred HHHHHHHHHhh--hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRT--LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 248 Ev~~LKQrRRT--LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+|.+|=..... .|+.-|+..|+.=.. .....|.++..+..+++.+...+.++..|+.--+.-||.
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~-rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~ 487 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQK-RLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEE 487 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44444333333 689999999996422 244456677777788888888877777776655555543
No 272
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=55.81 E-value=44 Score=33.38 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|-..|..|+..|+..++.+++.+..+|.++|-|+.
T Consensus 79 e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglre 113 (389)
T PF06216_consen 79 EWISLNDQVSHLQHQNSEQRQQIREMREIIEGLRE 113 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33446677777777777777777777777777653
No 273
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=55.63 E-value=82 Score=25.51 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+..++|..+..--.|++.++..+-.|...-..+|++||.
T Consensus 26 ~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEe 64 (79)
T PF08581_consen 26 QKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEE 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666677777777777777777777766654
No 274
>KOG0995|consensus
Probab=55.55 E-value=91 Score=33.75 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 292 KMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 292 ~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
++..|+.++.++++.++..++.|.+.++
T Consensus 336 ~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 336 RMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555443
No 275
>KOG0250|consensus
Probab=55.36 E-value=64 Score=37.11 Aligned_cols=7 Identities=14% Similarity=-0.130 Sum_probs=4.8
Q ss_pred CCCCCCC
Q psy4245 156 MPPHPNP 162 (328)
Q Consensus 156 m~~~~~~ 162 (328)
|-||+|-
T Consensus 179 ~~~lsQD 185 (1074)
T KOG0250|consen 179 MFVLSQD 185 (1074)
T ss_pred chhhcHH
Confidence 6777774
No 276
>PHA01750 hypothetical protein
Probab=55.31 E-value=68 Score=26.08 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=26.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 279 LEVTNKH-LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 279 LE~E~~~-L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
|.+.+++ .+.|+..|+.|++.+....|.+.++.+.+.+.+
T Consensus 32 lkdAvkeIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 32 LKDAVKEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3344444 346777777777777777777777777776654
No 277
>PRK01203 prefoldin subunit alpha; Provisional
Probab=55.26 E-value=50 Score=29.15 Aligned_cols=41 Identities=10% Similarity=0.240 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++|+.+...|++|++.|+.++..+...+..++.-++.|...
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~ 43 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDN 43 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 45777888888888899998888888888888888888773
No 278
>KOG4603|consensus
Probab=55.01 E-value=81 Score=29.79 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=43.0
Q ss_pred CCCCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy4245 220 ESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQ--LQKMKSEI 297 (328)
Q Consensus 220 l~i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~E--le~Lk~E~ 297 (328)
..|-|-|.++-.|+-+|=-..|. .++.+|-. |=+--++.||. .|.|++.|..- ++.|+.+.
T Consensus 63 qKIY~a~QDqF~~~~~eel~~ld----~~i~~l~e-----k~q~l~~t~s~--------veaEik~L~s~Lt~eemQe~i 125 (201)
T KOG4603|consen 63 QKIYFADQDQFDMVSDEELQVLD----GKIVALTE-----KVQSLQQTCSY--------VEAEIKELSSALTTEEMQEEI 125 (201)
T ss_pred eeeEeecHHhhcCCChHHHHHHh----HHHHHHHH-----HHHHHHHHHHH--------HHHHHHHHHHhcChHHHHHHH
Confidence 56667666666665443112221 23444433 33444577765 45555555532 45666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 298 KQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 298 ~rl~rErd~yK~K~e~L~ 315 (328)
+.|.+|...|..|+..+.
T Consensus 126 ~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 126 QELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666654
No 279
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=55.00 E-value=63 Score=25.41 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+.+++.|..|.+.....+...-.+.+.+|.+++.|.+.
T Consensus 24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666655555555666666666666665543
No 280
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=54.64 E-value=95 Score=33.03 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 294 KSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..|..+|.+|.+..++-|+.|...
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r 398 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTN 398 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888877776543
No 281
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=54.30 E-value=1.4e+02 Score=25.90 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
-+.|-.+...|...+.....|+++|+.|...|.
T Consensus 75 ~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL~ 107 (120)
T PF14931_consen 75 AKQREAQQQQLQALIAEKKMELERLRSEYESLQ 107 (120)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 282
>PRK14147 heat shock protein GrpE; Provisional
Probab=54.10 E-value=33 Score=31.09 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+.+...|+.+++.|+....++.-|.+.|+.+.
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~ 55 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRI 55 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444443
No 283
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=54.06 E-value=55 Score=26.56 Aligned_cols=10 Identities=10% Similarity=0.099 Sum_probs=6.1
Q ss_pred CCCCHHHHHH
Q psy4245 242 HGYPRDQIAK 251 (328)
Q Consensus 242 ~GLSkeEv~~ 251 (328)
.|+|-+++..
T Consensus 56 ~G~~l~ei~~ 65 (102)
T cd04789 56 GGLSLKECLA 65 (102)
T ss_pred CCCCHHHHHH
Confidence 4677666544
No 284
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.05 E-value=52 Score=31.06 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+..+..||+....++.++..+...++++...+..++.|+..+..
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777666666666666666666666666666665543
No 285
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=53.84 E-value=20 Score=36.68 Aligned_cols=31 Identities=19% Similarity=0.416 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
++|.-.|..|+..|++|.++|+.|++++..|
T Consensus 31 ~~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 31 IDENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777766666333
No 286
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=53.74 E-value=1e+02 Score=30.44 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
..+.+++.+...+...++....++.++..++.....
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555554444444333
No 287
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=53.64 E-value=31 Score=29.08 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+..+..+++++++|++.+..+...+++.++.|...
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555566666666666666666666555443
No 288
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=53.61 E-value=41 Score=30.87 Aligned_cols=13 Identities=15% Similarity=0.483 Sum_probs=8.0
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
.+|+++|..+||.
T Consensus 24 ~~LsEeE~eeLr~ 36 (162)
T PF04201_consen 24 EGLSEEEREELRS 36 (162)
T ss_pred ccCCHHHHHHHHH
Confidence 4677777665554
No 289
>PRK12704 phosphodiesterase; Provisional
Probab=53.56 E-value=98 Score=32.47 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=5.1
Q ss_pred HHHHHhhhhchHH
Q psy4245 252 LKAKRRTLKNRGY 264 (328)
Q Consensus 252 LKQrRRTLKNRGY 264 (328)
|+++-++|..|--
T Consensus 84 L~qrE~rL~~Ree 96 (520)
T PRK12704 84 LQKLEKRLLQKEE 96 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333443433
No 290
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.42 E-value=76 Score=24.96 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=38.5
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 269 RSKRLHQ-RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 269 RkKRLqq-~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
|.-+|+. +--+|+.+..|-..+-+..+++.++.+++..++.++..+....
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~ 59 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSN 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 4444432 3457788888888899999999999999999999998886543
No 291
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.39 E-value=42 Score=35.32 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
|+.+...|.+|.++++.|+..++..+..|.+..
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777788888888888888888887654
No 292
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=53.38 E-value=48 Score=31.08 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=15.5
Q ss_pred hhhhchHHHHHhHHHHHHHHHHHHHHHHH
Q psy4245 257 RTLKNRGYAQNCRSKRLHQRQELEVTNKH 285 (328)
Q Consensus 257 RTLKNRGYAQnCRkKRLqq~~~LE~E~~~ 285 (328)
+++++=.+|.--|.||+ +.+||.|+..
T Consensus 98 ~Rm~~qL~~aE~rhrr~--i~eLe~EKrk 124 (192)
T PF09727_consen 98 RRMLEQLAAAEKRHRRT--IQELEEEKRK 124 (192)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34555556666666665 5566665544
No 293
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.26 E-value=78 Score=25.85 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
..|..+...|+..+..|...+..++.|.+.+++.-+.|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~L 56 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYL 56 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444333333
No 294
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=53.12 E-value=1e+02 Score=23.68 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=18.6
Q ss_pred HhcCCCCHHHHHHHHHHHhhhhchH
Q psy4245 239 KKLHGYPRDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 239 rlL~GLSkeEv~~LKQrRRTLKNRG 263 (328)
..--+||.+|...|+++++...+..
T Consensus 37 ~~~l~Lt~eQ~~~l~~~~~~~~~~~ 61 (125)
T PF13801_consen 37 ADMLNLTPEQQAKLRALMDEFRQEM 61 (125)
T ss_dssp HHHS-TTHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3347899999999999998766543
No 295
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=53.10 E-value=1.1e+02 Score=27.69 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 287 QQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 287 ~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+.+...|...++++..+...+..++..
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444444444444444444433333
No 296
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.02 E-value=42 Score=38.83 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 263 GYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 263 GYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
|+|..+|.| ...+.+|+.+...|..++..+..+++.+...++.+...++.
T Consensus 732 G~~aR~~~R-~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 732 GAAARERAR-LRRIAELDARLAAVDDELAELARELRALGARQRALADELAG 781 (1353)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555544 44555666666666666666666666665555555555443
No 297
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=52.98 E-value=99 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=16.4
Q ss_pred CChhHhhcccHHHHHHh-cCCCCHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKK-LHGYPRDQIAKLKA 254 (328)
Q Consensus 224 fSDEeLVsmSVrELNrl-L~GLSkeEv~~LKQ 254 (328)
||.++|..+.. +..+ --|+|-+||..+-.
T Consensus 39 Y~~~~l~~l~~--I~~lr~~G~sl~eI~~~l~ 68 (135)
T PRK10227 39 YTQQHLNELTL--LRQARQVGFNLEESGELVN 68 (135)
T ss_pred CCHHHHHHHHH--HHHHHHCCCCHHHHHHHHH
Confidence 45566555432 1111 15899888877654
No 298
>KOG2391|consensus
Probab=52.97 E-value=2.1e+02 Score=29.44 Aligned_cols=37 Identities=11% Similarity=0.262 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
++|....++|+++++.|.++...+...+|.||.|.+.
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455677788999999999999999999999998887
No 299
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=52.84 E-value=35 Score=35.35 Aligned_cols=47 Identities=23% Similarity=0.407 Sum_probs=32.3
Q ss_pred HHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 255 KRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 255 rRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
.++.|++|+ =-..=++.+.+|+.+...+..+.+.|+.+...+.+++.
T Consensus 14 v~~~l~~r~----~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig 60 (429)
T COG0172 14 VREKLKKRG----GDALDVDKLLELDEERRKLLRELEELQAERNELSKEIG 60 (429)
T ss_pred HHHHHhhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677775 11122677778888888888888888877777777775
No 300
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=52.75 E-value=15 Score=31.45 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 287 QQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 287 ~~Ele~Lk~E~~rl~rErd~y 307 (328)
+.+++.|+.+..++..+.+.+
T Consensus 24 ~~~~~~l~~~~~r~~ae~en~ 44 (165)
T PF01025_consen 24 EKEIEELKERLLRLQAEFENY 44 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 301
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=52.63 E-value=1.3e+02 Score=30.04 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy4245 296 EIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 296 E~~rl~rErd~yK~K~e~L~~ 316 (328)
|..++.+|.+..+..|+.|..
T Consensus 356 el~~L~Re~~~~~~~Y~~l~~ 376 (498)
T TIGR03007 356 ELTQLNRDYEVNKSNYEQLLT 376 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666655544
No 302
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=52.50 E-value=39 Score=31.00 Aligned_cols=36 Identities=14% Similarity=0.305 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
++++|..|...++.||..|++-+..-.+....+|+|
T Consensus 30 E~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 30 EREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555555555555555555555555555555555
No 303
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.45 E-value=89 Score=35.88 Aligned_cols=40 Identities=25% Similarity=0.328 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 272 RLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 272 RLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
+++.+..||.+...|..+++.+..++..+..++..++.++
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3444444444444444444444444444433333333333
No 304
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=52.27 E-value=19 Score=33.96 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNK 284 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~ 284 (328)
++=-+-++..|+-..||.||+++|.-|-.-++.++++|.-...
T Consensus 151 rp~K~~~vv~~~~lkkrFKeK~FAaG~~Rd~vR~~E~lG~~Le 193 (212)
T COG2316 151 RPDKDVRVVELSSLKKRFKEKGFAAGVNRDEVRQAEELGVDLE 193 (212)
T ss_pred CCCCccccccHHHHHHHHHhhhhhccCCHHHHHHHHHhCCCHH
Confidence 5656678888999999999999999999999999988764433
No 305
>KOG1760|consensus
Probab=52.23 E-value=42 Score=29.96 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCCCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHH-------------hHH-------HHHHHHHH
Q psy4245 219 SESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQN-------------CRS-------KRLHQRQE 278 (328)
Q Consensus 219 ~l~i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQn-------------CRk-------KRLqq~~~ 278 (328)
...+.|-|.+.++.=-| +|.... +.-..||-.|--++|=.=|-+ |+. +.=.-...
T Consensus 11 ~v~Vt~EDQq~iN~Fsr-l~~R~~----~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~ 85 (131)
T KOG1760|consen 11 DVKVTFEDQQNINEFSR-LNSRKD----DLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQ 85 (131)
T ss_pred cCcccHHHHHHHHHHHH-HHhhHH----HHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHH
Confidence 35666777777765222 222222 344567777777777766653 111 11223355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
||..+..|+.+++.|..+++.+..+++++|.-+
T Consensus 86 LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 86 LEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777777543
No 306
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=52.15 E-value=70 Score=30.42 Aligned_cols=50 Identities=18% Similarity=0.243 Sum_probs=40.3
Q ss_pred hHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH
Q psy4245 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR 276 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~ 276 (328)
++++......|+.-|+.+=..+++.+-.-|+.|.||--+-+|.++|+..-
T Consensus 110 ~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~~ka 159 (220)
T cd07617 110 RDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKA 159 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44445555667777776667899999999999999999999999999763
No 307
>KOG2264|consensus
Probab=51.97 E-value=99 Score=34.12 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+||....+|+.+|++++..++++++++-.-|..+++|.
T Consensus 96 ~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk 134 (907)
T KOG2264|consen 96 TELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALK 134 (907)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444555555554444444444444444444443
No 308
>PRK00736 hypothetical protein; Provisional
Probab=51.86 E-value=88 Score=24.34 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-.+|+.+..|-..+-+..+++.++.+.+..+..|+..+...
T Consensus 15 afqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~ 55 (68)
T PRK00736 15 AEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQ 55 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45677788888888888888888888888888888887644
No 309
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=51.84 E-value=58 Score=30.89 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 234 VRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
...|+.-|+.+-+.++..|-..||.|.||-=.-+|-++|++.
T Consensus 105 ~~~fl~pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~~k 146 (244)
T cd07595 105 EEDVLSPLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRYNA 146 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 455666676677789999999999999999999999999864
No 310
>KOG0996|consensus
Probab=51.83 E-value=1.3e+02 Score=35.34 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=39.7
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 236 ELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLH---QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 236 ELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLq---q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+.|..+.-.+.+++...+.+++++|-| |+-|-.+..+ ....||.+-..++.+++.+.+.+..+..+++..+.+..
T Consensus 352 ~~~ek~~~e~~~~~~k~e~~~~~~~e~--~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~ 429 (1293)
T KOG0996|consen 352 DENEKFDIESNEEVEKNEAVKKEIKER--AKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKS 429 (1293)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444457788888888888888754 4444422221 22334444444444444444444444444444444444
Q ss_pred HH
Q psy4245 313 IV 314 (328)
Q Consensus 313 ~L 314 (328)
.+
T Consensus 430 e~ 431 (1293)
T KOG0996|consen 430 EL 431 (1293)
T ss_pred HH
Confidence 33
No 311
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.78 E-value=1.3e+02 Score=25.54 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy4245 300 IVEERNHYKKQYEIV 314 (328)
Q Consensus 300 l~rErd~yK~K~e~L 314 (328)
+..|++.++.||+.|
T Consensus 103 le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 103 LEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 312
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=51.74 E-value=13 Score=33.87 Aligned_cols=24 Identities=13% Similarity=0.428 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.|++.|+.|+.||+-|...+|+.+
T Consensus 24 dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 24 DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666
No 313
>PRK14140 heat shock protein GrpE; Provisional
Probab=51.70 E-value=49 Score=30.67 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=5.1
Q ss_pred HHHHHHHHhhhhc
Q psy4245 249 IAKLKAKRRTLKN 261 (328)
Q Consensus 249 v~~LKQrRRTLKN 261 (328)
+..+++....||+
T Consensus 46 i~~l~~ei~elkd 58 (191)
T PRK14140 46 IAELEAKLDELEE 58 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3344443333333
No 314
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.66 E-value=1.7e+02 Score=27.77 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|..||+.+++++.+.++.+....++..|...+|..++.++.+
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777777777777777766
No 315
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=51.65 E-value=60 Score=31.99 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred hhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 226 DDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 226 DEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
.+.|+.--++-+|..| |..+|+.+|--|-|..-+..---= ..++.+|+.+.++|+.+++.|+.|+++
T Consensus 180 ~~k~~~~qv~~in~ql------ErLRL~krrlQl~g~Ld~~~q~~~-~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 180 VDKMVEQQVRVINSQL------ERLRLEKRRLQLNGQLDDEFQQHY-VAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHhhcccccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh
No 316
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=51.65 E-value=66 Score=30.64 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=39.4
Q ss_pred HhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 228 LLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 228 eLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
+++.-....||.-|+.+=..+++.+-..|+.|.||--+-+|.+.|+..
T Consensus 111 ~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k 158 (229)
T cd07616 111 ELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRLKK 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555557888777666779999999999999999999999999875
No 317
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=51.63 E-value=39 Score=32.81 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
...|+++...|++|.++|+.|++++..+.+..++..+.+...
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~ 75 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPR 75 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888888888888888888887777776554
No 318
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=51.63 E-value=63 Score=30.70 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++..+.++..++.+++..|...+.+...|++..+..+..|+.
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555555544443
No 319
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=51.63 E-value=1.3e+02 Score=29.09 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQ-QQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~-~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+++.-|....+++| |-| ..++..+..+....- .++++++++-.++.+....-|+|+++-
T Consensus 98 ~kLs~L~~~k~~~r-K~~--------~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~~e~AR~K~eka 157 (237)
T cd07685 98 SKLSLLIRDKQQLR-KTF--------SEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKDSAQAKRKYQEA 157 (237)
T ss_pred HHHHHHHHHHHHHH-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67777777777766 222 456666777776655 689999999999999999999988874
No 320
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.49 E-value=61 Score=29.17 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
..|+.....+..++++|+..+.++...+..+|.+.+.|
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444443
No 321
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.28 E-value=45 Score=27.81 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
+.+|+.++..|.+|++.|+.++.....|.+.
T Consensus 51 v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~ 81 (87)
T PF12709_consen 51 VDELENENKALKRENEQLKKKLDTEREEKQE 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555443
No 322
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=51.19 E-value=14 Score=38.86 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
-.++++++|++|+.+|++|++.|.+.+
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccc
Confidence 344455555555555555544444433
No 323
>PRK14151 heat shock protein GrpE; Provisional
Probab=51.09 E-value=45 Score=30.42 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
...|+.+++.++....++.-|.+.||.+
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR 56 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRR 56 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 324
>KOG2751|consensus
Probab=51.00 E-value=55 Score=34.28 Aligned_cols=52 Identities=27% Similarity=0.434 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAE 324 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~~ 324 (328)
+++++.||.+..+|.-++..++.+..++.++.+.|-+.|....+..+--+++
T Consensus 196 ~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~de 247 (447)
T KOG2751|consen 196 LQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDE 247 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 5677777777777778888888888888888888888887777766655543
No 325
>KOG2483|consensus
Probab=50.99 E-value=36 Score=32.54 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.|.++.|..|+........++++|++|...+++++..++
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356778888888888888888888888877777777665
No 326
>KOG1029|consensus
Probab=50.97 E-value=1.2e+02 Score=34.63 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.++.++|++|...-..+++-+..++++++.+.+...-+++.||+
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566655554445555555555544444444444444443
No 327
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=50.95 E-value=1.3e+02 Score=27.63 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN-HYKKQYEIVM 315 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd-~yK~K~e~L~ 315 (328)
|+-++.++|++-...| |||-- |+.....|..+..++..+..++..+++ .++.-|..|.
T Consensus 7 Tr~~L~~lk~rl~~a~-rg~~l------------Lk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~ 65 (209)
T TIGR00309 7 TRMELLKLKDKLKMAK-RGYSL------------LKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLI 65 (209)
T ss_pred CHHHHHHHHHHHHHHH-HhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666555555 55532 455555667777777777777777777 5666666553
No 328
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=50.87 E-value=48 Score=26.61 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=8.5
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
.|+|-++|..+-+
T Consensus 56 ~G~~l~eI~~~l~ 68 (97)
T cd04782 56 LGISLKEIKDYLD 68 (97)
T ss_pred cCCCHHHHHHHHh
Confidence 5777777766543
No 329
>PRK14160 heat shock protein GrpE; Provisional
Probab=50.80 E-value=53 Score=31.00 Aligned_cols=39 Identities=26% Similarity=0.483 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
++..|+.++..|+.+++.|+..+.++..|.+.||.|.++
T Consensus 62 e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 62 ENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666666666666666666543
No 330
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.76 E-value=1.1e+02 Score=23.71 Aligned_cols=43 Identities=14% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
...|+..+..+++|.+.++.+++.+.+....+-.-||...+..
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~i 51 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQI 51 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4567888888999999999999999998888888888776643
No 331
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=50.61 E-value=1.2e+02 Score=29.96 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=43.8
Q ss_pred hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 259 LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 259 LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+.|..+..+--.+|.+....+.....++....+.|+.+...+..|+...|.+...|+...
T Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~ 239 (264)
T PF07246_consen 180 LTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDI 239 (264)
T ss_pred hhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555554445677777777777777777788888888888888888888888887663
No 332
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=50.45 E-value=81 Score=31.01 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhhchHHH
Q psy4245 246 RDQIAKLKAKRRTLKNRGYA 265 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYA 265 (328)
++.|.-+|++|+++.++.+.
T Consensus 137 E~sl~p~R~~r~~l~d~I~k 156 (271)
T PF13805_consen 137 EESLQPSRDRRRKLQDEIAK 156 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhHHHHHHHHH
Confidence 35566667777777766653
No 333
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=50.43 E-value=53 Score=32.50 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+|+.++.+|+.+++.|..++..+.+++..++.++++|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 12 ELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 455566666666777777777777777777777766654
No 334
>PF15456 Uds1: Up-regulated During Septation
Probab=50.35 E-value=1.7e+02 Score=25.40 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHhhhhchHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYA 265 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYA 265 (328)
||.+||..||..=+.|.+|.=+
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~ 40 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEY 40 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888777777766533
No 335
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.22 E-value=1.4e+02 Score=30.61 Aligned_cols=71 Identities=21% Similarity=0.238 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQ-------------------ELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~-------------------~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
+++..+++..+.+.++..|..-+.+=++... +|.+-..-+..++.++..++..+.+++..+
T Consensus 78 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (525)
T TIGR02231 78 KQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIREL 157 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665555555544343332 233333345567777777777777777777
Q ss_pred HHHHHHHHhc
Q psy4245 308 KKQYEIVMRN 317 (328)
Q Consensus 308 K~K~e~L~~~ 317 (328)
+.+++.|...
T Consensus 158 ~~~l~~l~~~ 167 (525)
T TIGR02231 158 EKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 336
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=50.06 E-value=49 Score=30.94 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=49.2
Q ss_pred CChhHhhcccHHHHHHhcCCCC--HHHHHHHHHHHhhhhch---HHHHHhHHHH-------HHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKLHGYP--RDQIAKLKAKRRTLKNR---GYAQNCRSKR-------LHQRQELEVTNKHLQQQLQ 291 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL~GLS--keEv~~LKQrRRTLKNR---GYAQnCRkKR-------Lqq~~~LE~E~~~L~~Ele 291 (328)
+..+-=|+++-+.||.+|-.-+ .-+...+|..=-.+++. ++-.++..=+ ...+..|+.++..|+.+++
T Consensus 50 ~~~~skvti~Edtf~nll~~a~k~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in 129 (181)
T PF04645_consen 50 VESDSKVTISEDTFNNLLLQAFKSNAEARNAKSELEMERSNLELSFIDSFNQYKNLELKSIKKEIEILRLKISSLQKEIN 129 (181)
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444456777778888763222 22333333333333332 2222222111 3456777777777777666
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 292 K-----MKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 292 ~-----Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+ +..+++.+..|++.++.+++...
T Consensus 130 ~~~k~~~n~~i~slk~EL~d~iKe~e~~e 158 (181)
T PF04645_consen 130 KNKKKDLNEEIESLKSELNDLIKEREIRE 158 (181)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5 44556667777777777776543
No 337
>PRK14141 heat shock protein GrpE; Provisional
Probab=50.00 E-value=40 Score=31.74 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhhc
Q psy4245 248 QIAKLKAKRRTLKN 261 (328)
Q Consensus 248 Ev~~LKQrRRTLKN 261 (328)
++..+++....+|+
T Consensus 39 ~i~~le~e~~elkd 52 (209)
T PRK14141 39 PLEALKAENAELKD 52 (209)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 338
>PRK14127 cell division protein GpsB; Provisional
Probab=49.99 E-value=50 Score=28.28 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=18.6
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
|||-..==--=|+++ .++...|.+++..|+.|++++..+++.|+.+
T Consensus 21 RGYd~~EVD~FLd~V---~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~ 66 (109)
T PRK14127 21 RGYDQDEVDKFLDDV---IKDYEAFQKEIEELQQENARLKAQVDELTKQ 66 (109)
T ss_pred CCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688654322222222 1222233344444444444444444444433
No 339
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.93 E-value=1.1e+02 Score=31.90 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
++++.+.+.+.+...|+.++++++.++..+..++...
T Consensus 336 ~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~ 372 (563)
T TIGR00634 336 EELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLI 372 (563)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666667777777788888877777777666655
No 340
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.82 E-value=89 Score=24.59 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rE 303 (328)
...++.+|+.|++.+.+|
T Consensus 45 a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 45 AYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 341
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=49.52 E-value=60 Score=31.02 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
.|+.+..+|+.+.++|.+|++.+..|+
T Consensus 49 ~L~~e~~~l~~eqQ~l~~er~~l~~er 75 (228)
T PRK06800 49 SLHKELNQLRQEQQKLERERQQLLADR 75 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 342
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=49.31 E-value=48 Score=27.51 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 279 LEVTNKHLQQQLQKMKS------EIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~------E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
|++++..|..||+-|+. ++.+++-|--.++..+..|+.+.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555553 34445555555555555554443
No 343
>KOG3215|consensus
Probab=49.19 E-value=78 Score=30.45 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=47.5
Q ss_pred cCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 241 LHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 241 L~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|.-|+..|+..+|++|=-=-|+-=+-||-++|+ +.|..+.+...+++-|+.++.+.++.+. -++.|++|.+.
T Consensus 67 L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~----Eiersi~~a~~kie~lkkql~eaKi~r~-nrqe~~~l~kv 138 (222)
T KOG3215|consen 67 LASLSQDEPSMLKTQRVIEMNLREIENLVQKKL----EIERSIQKARNKIELLKKQLHEAKIVRL-NRQEYSALSKV 138 (222)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHH
Confidence 566888899999999877777777777766654 3344444566666667666666655332 24556666543
No 344
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.09 E-value=1.4e+02 Score=34.02 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 294 KSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~e~L 314 (328)
..+++++..++..++.++..|
T Consensus 827 ~~ei~~l~~~~~~~~~~~~~l 847 (1163)
T COG1196 827 EQEIEELEEEIEELEEKLDEL 847 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 345
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=49.04 E-value=70 Score=28.23 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhH
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCR 269 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCR 269 (328)
++|-+-|+.-=++|.||.-|--|-
T Consensus 48 reQqk~L~e~i~~LE~RLRaGlCD 71 (120)
T PF10482_consen 48 REQQKTLHENIKVLENRLRAGLCD 71 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcccch
Confidence 477788888888999999988773
No 346
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=48.48 E-value=61 Score=25.03 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+--+|+.+.+|...+-+..+++.++.+.+..+..|+..+..
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888888888888999999999999999999998873
No 347
>KOG4196|consensus
Probab=48.46 E-value=53 Score=29.47 Aligned_cols=26 Identities=15% Similarity=0.332 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
..|..++..|..|...|+.|+.-++.
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555544444433
No 348
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.16 E-value=1.2e+02 Score=35.92 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHh
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNC 268 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnC 268 (328)
+.++...++.++++||+.+|-.-
T Consensus 941 r~e~~~~~~~~~~~~~~~~~l~~ 963 (1486)
T PRK04863 941 KQDYQQAQQTQRDAKQQAFALTE 963 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999988654
No 349
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.92 E-value=75 Score=24.34 Aligned_cols=30 Identities=17% Similarity=0.345 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
-.++..++.+...++.+-++|+.|.+.+..
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555555566666666666655544
No 350
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=47.82 E-value=11 Score=30.87 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=9.3
Q ss_pred HHHHHHhcCCCCHHHHHH
Q psy4245 234 VRELNKKLHGYPRDQIAK 251 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~ 251 (328)
-++|...++|+..+||..
T Consensus 8 ~~~F~~~~rGYd~~eVD~ 25 (131)
T PF05103_consen 8 NKEFKKSMRGYDPDEVDD 25 (131)
T ss_dssp H----EEEEEEEHHHHHH
T ss_pred hCccCCCCCCcCHHHHHH
Confidence 345666667777777753
No 351
>KOG1924|consensus
Probab=47.78 E-value=69 Score=36.32 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy4245 297 IKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 297 ~~rl~rErd~yK~K~e~L~~~ 317 (328)
++.++-++-+.-..||.++.+
T Consensus 794 vnniKP~i~avt~ACEE~rkS 814 (1102)
T KOG1924|consen 794 VNNIKPDIVAVTAACEELRKS 814 (1102)
T ss_pred HhhcChHHHHHHHHHHHHHhh
Confidence 334444455555556665544
No 352
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.72 E-value=59 Score=34.87 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q psy4245 291 QKMKSEIKQIVEERNHYKKQYEIVMRNKDRSE 322 (328)
Q Consensus 291 e~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~ 322 (328)
+.+..|+++|-+|++.++-+.+.|++.+|.-+
T Consensus 371 e~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 371 ELMNQEREKLTRELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHhHH
Confidence 44566788899999999999999999987643
No 353
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.66 E-value=31 Score=30.66 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
..++.|+..|+.|+++...|.+.+++..+.+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444333
No 354
>PRK14145 heat shock protein GrpE; Provisional
Probab=47.56 E-value=64 Score=30.16 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
..|+.+...|+.+++.|+....++.-|.+.||.+.+
T Consensus 48 ~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 48 EELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555543
No 355
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=47.54 E-value=35 Score=31.74 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSK-RLHQRQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkK-RLqq~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
+.+.++..+=.++..|.+|.+.-.|-+. .+.+...+=.++..|+.+++.|++++..
T Consensus 211 I~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~~k~~l~~~i~~Lk~~l~~ 267 (268)
T PF13234_consen 211 IKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYHEKAELQEEIKALKRQLSD 267 (268)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888888999999999999988553 3455555555666666777766666653
No 356
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=47.28 E-value=77 Score=30.04 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=41.2
Q ss_pred hhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 226 DDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 226 DEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
-+++.......||.-|+.+-+.+++.+...|+.|.||-=+-+|.++|+..
T Consensus 104 ~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~~k 153 (223)
T cd07614 104 KDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYKKKRQGK 153 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555677888888777899999999999999999999999888753
No 357
>KOG2185|consensus
Probab=47.23 E-value=51 Score=34.60 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 234 VRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
..=+|+.|-|.+.+-+ -.-|+ ||+--|+-+-+-.=-...++|+|+..|++++.+|++-+++
T Consensus 378 F~fiNekl~g~~~~~~---~~~rk--kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~R 438 (486)
T KOG2185|consen 378 FSFINEKLFGTRHEKV---HSERK--KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNR 438 (486)
T ss_pred HHHHHHHhcccccccc---cchhh--hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3446888877443322 23333 7777666665533345677888888888888888776544
No 358
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.20 E-value=79 Score=26.19 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.-|++.+..|+..++.|..++..+..+++.+...++.+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~ 127 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQEL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555555555555555443
No 359
>PRK14157 heat shock protein GrpE; Provisional
Probab=47.12 E-value=48 Score=31.73 Aligned_cols=18 Identities=6% Similarity=-0.040 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhchH
Q psy4245 246 RDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRG 263 (328)
..++..++.+...+|+|.
T Consensus 83 ~~~l~~le~e~~e~kd~l 100 (227)
T PRK14157 83 LTPLGQAKKEAAEYLEAL 100 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346667777766666543
No 360
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=46.91 E-value=93 Score=25.19 Aligned_cols=41 Identities=27% Similarity=0.414 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
.|.....+|+.+++.|..++.++...+..|+.-.+.|....
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666677888888888888887777777776666665543
No 361
>PRK14163 heat shock protein GrpE; Provisional
Probab=46.87 E-value=58 Score=30.88 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhhc
Q psy4245 248 QIAKLKAKRRTLKN 261 (328)
Q Consensus 248 Ev~~LKQrRRTLKN 261 (328)
++..++.+...+|+
T Consensus 48 ~l~~l~~e~~el~d 61 (214)
T PRK14163 48 QLDQVRTALGERTA 61 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 362
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=46.86 E-value=99 Score=30.94 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 267 NCRSKRLHQRQELEVTNKHLQ-QQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 267 nCRkKRLqq~~~LE~E~~~L~-~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..|+||-.....|-+--.++. .|+..|+.|+..+.-||. |-..+-...+|
T Consensus 221 ~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk-~de~lg~~~rf 271 (302)
T PF07139_consen 221 DARQKKAEELKRLTDRASQMSEEQLAELRADIKHFVSERK-YDEELGRAARF 271 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhh-hHHHHhHhhhc
Confidence 345555555555444444433 566666666666666652 33444444444
No 363
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.82 E-value=86 Score=25.47 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRS 321 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~ 321 (328)
.....|-.|++-+.-|+-.+++++..|+...|.+
T Consensus 54 ~~~keLL~EIA~lE~eV~~LE~~v~~L~~~l~~q 87 (88)
T PF14389_consen 54 KKAKELLEEIALLEAEVAKLEQKVLSLYRQLFQQ 87 (88)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556677778888888888888888888877754
No 364
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=46.81 E-value=96 Score=25.95 Aligned_cols=13 Identities=23% Similarity=0.468 Sum_probs=9.7
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
-|+|-+||..+=+
T Consensus 55 ~G~sl~eI~~~l~ 67 (124)
T TIGR02051 55 LGFSLEEIGGLLG 67 (124)
T ss_pred CCCCHHHHHHHHh
Confidence 6888888877654
No 365
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=46.80 E-value=1.3e+02 Score=31.54 Aligned_cols=40 Identities=18% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+..++.+...+...++.|+.+-..+...++.|+.++..+.
T Consensus 392 leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ik 431 (569)
T PRK04778 392 LEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIK 431 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555554
No 366
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.75 E-value=2e+02 Score=25.22 Aligned_cols=88 Identities=8% Similarity=0.205 Sum_probs=49.4
Q ss_pred hHhhcccHHHHHHhcCCCCH--HH-HHHHHHHHhhhhchHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 227 DLLMCLSVRELNKKLHGYPR--DQ-IAKLKAKRRTLKNRGYAQNCRSKRLHQR-QELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GLSk--eE-v~~LKQrRRTLKNRGYAQnCRkKRLqq~-~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
-+++=-+.|.|+.....+++ ++ -..|..-||-|.-|.-.-.|..-...++ ....+++..++.+++..+.++..+..
T Consensus 31 sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 31 SDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444455666655433332 12 2457778888888888888766655444 33344555555555555555555555
Q ss_pred HHHHHHHHHHHH
Q psy4245 303 ERNHYKKQYEIV 314 (328)
Q Consensus 303 Erd~yK~K~e~L 314 (328)
-...+..|+..|
T Consensus 111 ~V~~Le~ki~~i 122 (126)
T PF07889_consen 111 MVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 367
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.62 E-value=1.7e+02 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+..+.+...+.+|+.|+.+|+.|+.....++..++..++.|+..
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666777778888888887777788888877777654
No 368
>PF10148 SCHIP-1: Schwannomin-interacting protein 1; InterPro: IPR015649 SCHIP-1 is a coiled-coil protein that specifically associates with schwannomin in vitro and in vivo. The product of the neurofibromatosis type 2 (NF2) tumour suppressor gene, known as schwannomin or merlin, is involved in NF2-associated and sporadic schwannomas and meningiomas. It is closely related to the ezrin-radixin-moesin family members, which link membrane proteins to the cytoskeleton. Association with SCHIP-1 can be observed only with some naturally occurring mutants of schwannomin, or a schwannomin spliced isoform lacking exons 2 and 3, but not with the schwannomin isoform exhibiting growth-suppressive activity []. This entry consists of mammalian SCHIP-1 proteins from Mus musculus (Mouse) and Homo sapiens (Human).
Probab=46.62 E-value=66 Score=31.16 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=30.5
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 261 NRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 261 NRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
+|+|-..|-...|+.|. ..|..+|+.|..|+-++.-|||.+.-.
T Consensus 166 ~r~~L~~~~~~qLq~i~------~~l~~~i~~ln~~Lv~~L~~RD~Lh~e 209 (238)
T PF10148_consen 166 RRQDLTKMNVPQLQVIV------NDLHEQIEALNEELVQLLLERDDLHME 209 (238)
T ss_pred cHHHHhcCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 35555555555555544 478888888888888888888887643
No 369
>KOG0933|consensus
Probab=46.57 E-value=1.1e+02 Score=35.42 Aligned_cols=42 Identities=12% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+.|.-|..+|+.+++.++.++..+..+++.|+..+..|...+
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 370
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=46.54 E-value=47 Score=29.39 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy4245 300 IVEERNHYKKQYEIVMR 316 (328)
Q Consensus 300 l~rErd~yK~K~e~L~~ 316 (328)
+.|..|.++.+++++..
T Consensus 71 l~Rk~~kl~~el~~~~~ 87 (161)
T PF04420_consen 71 LNRKLDKLEEELEKLNK 87 (161)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 371
>PF09523 DUF2390: Protein of unknown function (DUF2390); InterPro: IPR012659 Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.
Probab=46.43 E-value=29 Score=29.24 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHHh
Q psy4245 242 HGYPRDQIAKLKAKRRTLKNRGYAQNC 268 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLKNRGYAQnC 268 (328)
.....+-|.-||..||++|+-..+...
T Consensus 60 ~~W~~~vv~PLR~lRr~lk~~~~~~~~ 86 (109)
T PF09523_consen 60 APWREEVVQPLRALRRALKAAAPEDPD 86 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcc
Confidence 344556788999999999988766653
No 372
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=46.43 E-value=89 Score=27.98 Aligned_cols=40 Identities=8% Similarity=0.238 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++.|++.+..|..-+++|..+++++.+.+..+.+.++.+.
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~ 135 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQ 135 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555555443
No 373
>PRK14153 heat shock protein GrpE; Provisional
Probab=46.24 E-value=45 Score=31.04 Aligned_cols=34 Identities=9% Similarity=0.363 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
++.++..|+.+++.|+....++.-|.+.||.+.+
T Consensus 38 ~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 38 ADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555544443
No 374
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.17 E-value=2.1e+02 Score=28.03 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=31.3
Q ss_pred cCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH
Q psy4245 241 LHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ 275 (328)
Q Consensus 241 L~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq 275 (328)
|..|.+.++..|-..||.|-.|.-=-+|.++|.++
T Consensus 112 L~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~ 146 (257)
T cd07620 112 LNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQ 146 (257)
T ss_pred HHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHH
Confidence 57788899999999999999999999999999854
No 375
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=46.08 E-value=1.4e+02 Score=24.61 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=13.3
Q ss_pred CCCCHHHHHHHHHHHhhhh
Q psy4245 242 HGYPRDQIAKLKAKRRTLK 260 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLK 260 (328)
-|+|-++|..+=+.....+
T Consensus 55 ~G~sl~eI~~~l~~~~~~~ 73 (116)
T cd04769 55 LGFTLAELKAIFAGHEGRA 73 (116)
T ss_pred cCCCHHHHHHHHhccccCC
Confidence 6888888887766555443
No 376
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=46.03 E-value=88 Score=33.00 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEI--------------KQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~--------------~rl~rErd~yK~K~e~L~~ 316 (328)
++..||.++..|+.+++.|..++ .++..|.+.++.+++.++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665554444433 3444556666666665543
No 377
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=45.99 E-value=2.2e+02 Score=25.38 Aligned_cols=66 Identities=21% Similarity=0.273 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 249 IAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 249 v~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+..+++.=..+.++..|.++...++.+++.=......|.+-.+..+.+.+.+..+...-+++++.-
T Consensus 61 ~~~~~~~L~~l~~~l~~a~~~~~~l~~~e~~~~~~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee 126 (145)
T PF14942_consen 61 IELMQQNLEQLLERLQAANSMCSRLQQKEQEKQKDDYLQANREQRKQEWEEFMKEQQQKKQRVDEE 126 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556678899999999999999987777777788888888888888888877777666543
No 378
>KOG1029|consensus
Probab=45.68 E-value=96 Score=35.23 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=35.2
Q ss_pred hhhchHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 258 TLKNRGYAQNCRSKRLHQRQELEVTNK----HLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 258 TLKNRGYAQnCRkKRLqq~~~LE~E~~----~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|||.++|.--+.-|+.+.+.+-.++. .|+.+++.|.+|.+.-..|+|.++..++.|..
T Consensus 515 qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~ 577 (1118)
T KOG1029|consen 515 QLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKE 577 (1118)
T ss_pred HHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 366777776655555555444433332 25556666666667777777777766666654
No 379
>PHA03065 Hypothetical protein; Provisional
Probab=45.66 E-value=51 Score=34.43 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=22.9
Q ss_pred HHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHH
Q psy4245 251 KLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKH 285 (328)
Q Consensus 251 ~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~ 285 (328)
-||++||+ |-++|-+||..+++.||+..+.
T Consensus 83 ~lReKRr~-----a~~~~~kRK~~ei~~l~~~i~~ 112 (438)
T PHA03065 83 SLREKRRK-----ASKNTIKRKREEIEKLEDDIKN 112 (438)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 46777766 3356668999999999998764
No 380
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=45.38 E-value=93 Score=27.85 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSE 322 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~ 322 (328)
+..++|..+...++++++.|+.++..+...+..+..-.+.|......++
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~ 54 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGE 54 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777888889999999999998888888888777777766544443
No 381
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=45.27 E-value=1.5e+02 Score=30.90 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKS-------EIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~-------E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
+..+-.||.+...++.++..|+. ++..+..++..+++.++.++.....
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~ 339 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSN 339 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 67788889998888888888865 4667788888888888887766543
No 382
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=45.20 E-value=80 Score=26.04 Aligned_cols=39 Identities=8% Similarity=0.256 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+.+.-|++.+..|..++++|...++.+..+.+.+...++
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555566666666666666666666665555443
No 383
>KOG1962|consensus
Probab=45.19 E-value=76 Score=30.28 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|+.++++...+++......++++.+.+.+..
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3333333333444444444444444444433
No 384
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=45.16 E-value=1.2e+02 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=23.0
Q ss_pred hhchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 259 LKNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 259 LKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
+|+-..+..-..... +++.+|+.+...|...|++-+.|+++..+.+.
T Consensus 167 l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 167 LKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333332 33455555555566666555555555444433
No 385
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=45.14 E-value=89 Score=28.05 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
+.++.||.|+..+...|++-+.++.+|.....+||.-
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knL 37 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNL 37 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888877777776666643
No 386
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=45.12 E-value=1.3e+02 Score=22.39 Aligned_cols=39 Identities=23% Similarity=0.341 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKH-LQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 271 KRLqq~~~LE~E~~~-L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
..+.++..+..++.. ++..+..|+.++..+.+.+...+.
T Consensus 44 ~~l~~Il~~d~~i~~ll~~~~~~l~~~l~~~~~~~~~~~a 83 (84)
T PF05400_consen 44 ELLRRILELDQEIRALLQARRDELKQELRQLRKGRKANNA 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 447777777777766 457778888888887777766554
No 387
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=45.09 E-value=77 Score=27.50 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
+.|+.|.+....|+.+..+|.+.+-.+++.+.+.+.
T Consensus 107 ~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 107 KELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666665543
No 388
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=44.84 E-value=1.3e+02 Score=27.26 Aligned_cols=53 Identities=15% Similarity=0.237 Sum_probs=37.7
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
+.+++.+|.|.-|-+--++|-.+..+|....++.+..+..|...++++..-+.
T Consensus 84 ~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 84 KEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777777777888888888887777777777777766666655443
No 389
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=44.75 E-value=1.3e+02 Score=26.21 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=8.8
Q ss_pred CCCCHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKA 254 (328)
Q Consensus 242 ~GLSkeEv~~LKQ 254 (328)
-|+|-+||..+=+
T Consensus 63 ~G~sL~eI~~ll~ 75 (144)
T PRK13752 63 LGFSLDEIAELLR 75 (144)
T ss_pred cCCCHHHHHHHHh
Confidence 5788777766543
No 390
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=44.75 E-value=85 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|-.++..|...+..|+.+.+...+.++.++.++..+.+
T Consensus 35 L~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 35 LAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443
No 391
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=44.67 E-value=1.9e+02 Score=26.38 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH-YKKQYEIVM 315 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~-yK~K~e~L~ 315 (328)
.|+-++.++|++-+..| |||-- |+.....|..++.++..+..++..+.+. ++.-|..|.
T Consensus 8 pTr~~L~~lk~~l~~a~-rg~~l------------Lk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~ 67 (204)
T PRK00373 8 PTRMELINLKRRLKLAE-RGHKL------------LKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFL 67 (204)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666555554 56543 3444444555555555555555555554 444444443
No 392
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=44.60 E-value=1.7e+02 Score=24.39 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=17.2
Q ss_pred CChhHhhcccHHHHHHhc-CCCCHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKL-HGYPRDQIAKLKAK 255 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL-~GLSkeEv~~LKQr 255 (328)
|++++|..+.. +..+- -|+|-+||+.+=+.
T Consensus 39 Y~~~~l~~l~~--I~~lr~~G~sL~eI~~~l~~ 69 (127)
T cd04784 39 YDEEHLERLLF--IRRCRSLDMSLDEIRTLLQL 69 (127)
T ss_pred cCHHHHHHHHH--HHHHHHcCCCHHHHHHHHHh
Confidence 56666655432 12211 48998888876543
No 393
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=44.22 E-value=42 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 291 QKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 291 e~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..|.+|+.+|++|+..++..++.+.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555554444
No 394
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=44.06 E-value=1.5e+02 Score=27.37 Aligned_cols=62 Identities=21% Similarity=0.342 Sum_probs=38.5
Q ss_pred HHHHHhhhhchHHHHHhH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 252 LKAKRRTLKNRGYAQNCR----SKRLHQR-QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 252 LKQrRRTLKNRGYAQnCR----kKRLqq~-~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
|..+++-.+-|+.||-.| +|+|.++ ++||.-..=.+.+++.++..+..+.+|++.+.+-|.+
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqK 109 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQK 109 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334455677788888887 5777655 5666544445566666666666666666655555443
No 395
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=44.00 E-value=1.2e+02 Score=27.81 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 294 KSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~ 311 (328)
+..+.++.+|||.+..|+
T Consensus 130 ~a~L~~v~~ERD~Lr~kL 147 (152)
T PF15186_consen 130 QAALQEVQKERDLLRWKL 147 (152)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333566777777777665
No 396
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=44.00 E-value=45 Score=28.73 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
..||.|+.-|+-+++-|...+++
T Consensus 82 ~~LeEENNlLklKievLLDMLte 104 (108)
T cd07429 82 QQLEEENNLLKLKIEVLLDMLAE 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666665555555555444
No 397
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.86 E-value=1.6e+02 Score=32.32 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=11.6
Q ss_pred HhhcccHHHHHHhcCCCCHH
Q psy4245 228 LLMCLSVRELNKKLHGYPRD 247 (328)
Q Consensus 228 eLVsmSVrELNrlL~GLSke 247 (328)
+++.-...++|+++..|.++
T Consensus 509 ~~~~~~~~~~~~li~~l~~~ 528 (782)
T PRK00409 509 KLIGEDKEKLNELIASLEEL 528 (782)
T ss_pred HHHhhhhhHHHHHHHHHHHH
Confidence 34444555777777666543
No 398
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.77 E-value=1.3e+02 Score=31.93 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred HhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHH---HHHHHHHHHHHHHH-H------HHHHHHHHHHHHHHHHHHHH
Q psy4245 239 KKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRL---HQRQELEVTNKHLQ-Q------QLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 239 rlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRL---qq~~~LE~E~~~L~-~------Ele~Lk~E~~rl~rErd~yK 308 (328)
.+|.+-+-.-+...+.+++.+|=+...-+-|++.| +.++++++.+..|. . ++.+.++|+.+++.|..+.|
T Consensus 153 eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 153 ALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADK 232 (555)
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcc
Q psy4245 309 KQYEIVMRNK 318 (328)
Q Consensus 309 ~K~e~L~~~~ 318 (328)
+++..|....
T Consensus 233 ~~i~~~~~~l 242 (555)
T TIGR03545 233 QKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHH
No 399
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=43.65 E-value=1.8e+02 Score=23.76 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
...+.++..|..++..|+.++..+...+..|+..-+-|...+
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555666666666666666666666665555555443
No 400
>KOG4343|consensus
Probab=43.48 E-value=65 Score=34.91 Aligned_cols=45 Identities=22% Similarity=0.403 Sum_probs=29.4
Q ss_pred hchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 260 KNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 260 KNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
|-+-|-+.--.| +..|+.|+.+|++|-..|+++++.+..|-..+|
T Consensus 299 KKKEy~~~Le~r----Lq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 299 KKKEYMLGLEAR----LQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 336676654433 445677777777777777777777777655443
No 401
>PRK14161 heat shock protein GrpE; Provisional
Probab=43.40 E-value=66 Score=29.44 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhhchH
Q psy4245 246 RDQIAKLKAKRRTLKNRG 263 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRG 263 (328)
.+++..++.+...+|+|.
T Consensus 25 ~~ei~~l~~e~~elkd~~ 42 (178)
T PRK14161 25 NPEITALKAEIEELKDKL 42 (178)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666777766666553
No 402
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=43.23 E-value=75 Score=26.21 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
++..||.++..+..++..-+.|.++...++|..-..|
T Consensus 40 kv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~s~ 76 (78)
T COG4238 40 KVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQSY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Confidence 3456777777777777777777777777777665544
No 403
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.19 E-value=2.4e+02 Score=29.62 Aligned_cols=39 Identities=8% Similarity=0.187 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
..|.++...+..+...++..+..+..+....+.+++.+.
T Consensus 386 eel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~ 424 (569)
T PRK04778 386 EEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYR 424 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444555544443
No 404
>PF13514 AAA_27: AAA domain
Probab=43.19 E-value=1.3e+02 Score=33.99 Aligned_cols=19 Identities=16% Similarity=0.011 Sum_probs=12.7
Q ss_pred CCChhHhhcc----cHH--HHHHhc
Q psy4245 223 LISDDLLMCL----SVR--ELNKKL 241 (328)
Q Consensus 223 ~fSDEeLVsm----SVr--ELNrlL 241 (328)
.|+.++|..+ .-. ||++.|
T Consensus 94 ~~d~~~L~~gG~~l~~~~gdlg~~L 118 (1111)
T PF13514_consen 94 SFDHEELREGGESLLEAEGDLGQLL 118 (1111)
T ss_pred cCCHHHHHHHHHHHHhhhhHHHHHH
Confidence 4788888777 223 377877
No 405
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.19 E-value=52 Score=32.21 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.++..++.+++.++++|+.|++.+.
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 406
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=43.17 E-value=1.5e+02 Score=31.99 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKR 272 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKR 272 (328)
+.+..|...=+||||.--...+|...
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~e 54 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQE 54 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555444433
No 407
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=42.87 E-value=30 Score=25.23 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|.+.|..+|.+.+..|...+..|..+.++|..|...++.+.
T Consensus 4 k~~~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 4 KYSRQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp --------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 44566667777777777777777777777777777766553
No 408
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=42.74 E-value=1.8e+02 Score=26.82 Aligned_cols=52 Identities=19% Similarity=0.376 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.|+-++.++|++-.+.+ |||- -|+.....|..|+-++..+..++.++.+..-
T Consensus 7 pTK~eL~~lk~~L~~a~-rg~~------------lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~ 58 (201)
T PRK02195 7 LTKNSLKKQKKQLKMLE-RYLP------------TLKLKKAQLQAEVRRAKAEAAELEQEYQKLR 58 (201)
T ss_pred CCHHHHHHHHHHHHHHH-HhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777766655555 5542 3445555666677777777666666666533
No 409
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=42.60 E-value=61 Score=25.92 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~r 302 (328)
++..|+.++..+..+++-+..
T Consensus 78 ~l~~l~~~~~~~~~~~~~~~~ 98 (104)
T PF13600_consen 78 ELEALEDELAALQDEIQALEA 98 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 410
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=42.39 E-value=60 Score=26.67 Aligned_cols=30 Identities=23% Similarity=0.497 Sum_probs=23.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQ-QQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 285 ~L~-~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+.. .+++.|+.|+..+.+|||.+...+...
T Consensus 15 e~~~k~lE~L~~eL~~it~ERnELr~~L~~~ 45 (84)
T PF04822_consen 15 EKKMKELERLKFELQKITKERNELRDILALY 45 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 677888888888889999888877644
No 411
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.37 E-value=2.3e+02 Score=25.46 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKH---LQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~---L~~Ele~Lk~E~~rl~rErd~y 307 (328)
||.|+...+..++.....+-+.. |.+-.....+|...... =.+.|.+|.+|+..|...+...
T Consensus 44 LT~EQQa~~q~I~~~f~~~t~~L--RqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 44 LTTEQQAAWQKIHNDFYAQTSAL--RQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999888877655444332 33333334444332211 1233455555555555444433
No 412
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.23 E-value=1.3e+02 Score=31.03 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=8.4
Q ss_pred HHHHHHhhhhchHH
Q psy4245 251 KLKAKRRTLKNRGY 264 (328)
Q Consensus 251 ~LKQrRRTLKNRGY 264 (328)
-||+||-+++-|.+
T Consensus 86 glr~i~es~~e~q~ 99 (401)
T PF06785_consen 86 GLRKIRESVEERQQ 99 (401)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666666554
No 413
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.08 E-value=1.5e+02 Score=24.13 Aligned_cols=64 Identities=13% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 243 GYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQE--------LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 243 GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~--------LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
-++.+++.+|+.++. ||+=|.--. -+.++.. .+.-...|..+++.|..+++++.+-++.++.++
T Consensus 38 ~Y~~~~l~~l~~I~~-lr~~G~sL~----eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 38 DFTEEDLEWLEFIKC-LRNTGMSIK----DIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred cCCHHHHHHHHHHHH-HHHcCCCHH----HHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888875 565443221 1111111 112223355555555555555555555555544
No 414
>COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]
Probab=42.04 E-value=46 Score=29.97 Aligned_cols=51 Identities=20% Similarity=0.178 Sum_probs=41.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 263 GYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 263 GYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
|||+|-=..|--.+..=+..++.++.++.++.++......+-..+|.+++.
T Consensus 24 GYarNfLiPkglAv~At~~n~~~~e~~r~~~e~~~~~~~~~a~~lk~~Le~ 74 (148)
T COG0359 24 GYARNFLIPKGLAVPATKGNLKLLEARRAKLEKKAAEELAEAEALKEKLEG 74 (148)
T ss_pred hhhhhhhccccchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 899998877766666556666777888888888888888888999999988
No 415
>KOG0992|consensus
Probab=42.04 E-value=87 Score=33.78 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=47.5
Q ss_pred hhhchHHHHHhHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 258 TLKNRGYAQNCRSKRL-HQRQE-LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 258 TLKNRGYAQnCRkKRL-qq~~~-LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
-.||+.+|..||+-+. ...+. ||+.+.++.+..+++..-+.+|..|+..|+..+..-.
T Consensus 364 ee~tlla~~~dr~se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~ 423 (613)
T KOG0992|consen 364 EEKTLLAAADDRFSEYSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNA 423 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4688999999998665 44444 8888888999999999999999999999998875443
No 416
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=41.68 E-value=1.4e+02 Score=22.70 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=14.3
Q ss_pred CCCCCCCChhHhhcccHHHHHHhc
Q psy4245 218 YSESDLISDDLLMCLSVRELNKKL 241 (328)
Q Consensus 218 ~~l~i~fSDEeLVsmSVrELNrlL 241 (328)
|.+..+=.+++.+.--.+.+|..+
T Consensus 11 y~i~~~~~~ee~l~~~a~~i~~~i 34 (89)
T PF05164_consen 11 YRIKCPDEDEEYLRKAAELINEKI 34 (89)
T ss_dssp EEECETGCGHHHHHHHHHHHHHHH
T ss_pred EEeecCCCCHHHHHHHHHHHHHHH
Confidence 444434456666666677777654
No 417
>KOG4643|consensus
Probab=41.65 E-value=69 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.402 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
.+++.++.+=|||.--. .-|-+...+|+.|...|++++++|+.|...+..|-.
T Consensus 177 velAdle~kir~LrqEl------EEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ 229 (1195)
T KOG4643|consen 177 VELADLEKKIRTLRQEL------EEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH 229 (1195)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666656554211 233466666777777777777777777766554443
No 418
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=41.62 E-value=92 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.|..+..|+.++..|.+|+++|..+++.-..
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544433
No 419
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=41.49 E-value=49 Score=27.60 Aligned_cols=54 Identities=6% Similarity=0.099 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccccC
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAEHLY 327 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~~h~y 327 (328)
+...+++.++..++.+++.|+.+..-...|.+.++.+.........++.++..|
T Consensus 8 ~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~rv~~~lgg~~s~ay 61 (116)
T PF10552_consen 8 QATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKSRVYELLGGKGSPAY 61 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 445555666666666666666555444555555555555444444444444433
No 420
>KOG0249|consensus
Probab=41.45 E-value=1.8e+02 Score=32.77 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhhhch------HH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 246 RDQIAKLKAKRRTLKNR------GY---------AQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 246 keEv~~LKQrRRTLKNR------GY---------AQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
++.-.+|..-|+++||- +| |.-=|.--|+.++.|+.+...++++++.++.+++++...+..+.+.
T Consensus 173 qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e 252 (916)
T KOG0249|consen 173 EELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGE 252 (916)
T ss_pred HHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34455666667777663 22 1122223356677788888888888888887777777777777777
Q ss_pred HHHHHh
Q psy4245 311 YEIVMR 316 (328)
Q Consensus 311 ~e~L~~ 316 (328)
++.|..
T Consensus 253 ~~qL~~ 258 (916)
T KOG0249|consen 253 LDQLRR 258 (916)
T ss_pred HHHHHH
Confidence 777764
No 421
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=41.41 E-value=2.3e+02 Score=27.83 Aligned_cols=24 Identities=13% Similarity=0.401 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 293 MKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 293 Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
...+..+|.+|.+..+..|+.|..
T Consensus 340 ~~~~~~~L~r~~~~~~~~y~~ll~ 363 (444)
T TIGR03017 340 QRDEMSVLQRDVENAQRAYDAAMQ 363 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777788777777777765
No 422
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=41.28 E-value=2.2e+02 Score=28.10 Aligned_cols=39 Identities=21% Similarity=0.375 Sum_probs=25.1
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHH
Q psy4245 235 RELNKKL-HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRL 273 (328)
Q Consensus 235 rELNrlL-~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRL 273 (328)
+-|.+.| -=+-++|+..||+..+...++-.|---...|+
T Consensus 140 KtlEQAl~EV~EEeEL~~lr~~q~~fe~~R~aEl~e~qrl 179 (291)
T PF06098_consen 140 KTLEQALMEVMEEEELAALRRQQRAFEELRNAELAEVQRL 179 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 44678999999999988776655543333333
No 423
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.09 E-value=1.4e+02 Score=25.59 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQ----IVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~r----l~rErd~yK~K~e~L~~~~ 318 (328)
...|+.+..+.+.+++.-+.++.. ...=.+.+-..|.+|+.+.
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hl 73 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHL 73 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555544 4444555666666666653
No 424
>PRK04038 rps19p 30S ribosomal protein S19P; Provisional
Probab=40.92 E-value=36 Score=30.32 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.7
Q ss_pred CCChhHhhcccHHHHHHhc
Q psy4245 223 LISDDLLMCLSVRELNKKL 241 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL 241 (328)
+++.|+|..|+.+||-.+|
T Consensus 11 G~~l~~L~~m~~~~~~~l~ 29 (134)
T PRK04038 11 GYTLEELQEMSLEEFAELL 29 (134)
T ss_pred ccCHHHHHcCCHHHHHHHc
Confidence 5789999999999988776
No 425
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.92 E-value=1.3e+02 Score=25.82 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=4.7
Q ss_pred HHHHHHHhhhhc
Q psy4245 250 AKLKAKRRTLKN 261 (328)
Q Consensus 250 ~~LKQrRRTLKN 261 (328)
..+...|-.+++
T Consensus 100 ~~~~s~k~~l~~ 111 (218)
T cd07596 100 RYCQAVKETLDD 111 (218)
T ss_pred HHHHHHHHHHHH
Confidence 333334444443
No 426
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=40.91 E-value=35 Score=30.21 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=36.0
Q ss_pred chHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 261 NRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 261 NRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.+|||+|.=..+--.+..=+....+++.+.+.+..+.++...+-..++.+++.+
T Consensus 22 k~GYaRNyLiP~g~A~~aT~~nl~~~e~~~~~~~~~~~~~~~~a~~l~~~l~~~ 75 (148)
T TIGR00158 22 KDGYARNFLIPKGLAVPATKKNIEFFEARRKKLEEKLAANKAAAARLKEVLELG 75 (148)
T ss_pred cccchhhhhcccCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 379999987766555544445555666666666666666666667777777766
No 427
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.85 E-value=76 Score=35.02 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+.+.|...+..|..+.+.|..|+.+|+.|+..||.+=..|.
T Consensus 55 ~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll 96 (717)
T PF09730_consen 55 AENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLL 96 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555666666666666665544443
No 428
>PRK14146 heat shock protein GrpE; Provisional
Probab=40.77 E-value=75 Score=29.93 Aligned_cols=27 Identities=11% Similarity=0.321 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
..|+.+++.|+...-++.-|.+.||.|
T Consensus 64 ~~l~~e~~el~d~~lR~~AdfeN~rkR 90 (215)
T PRK14146 64 DNAKKEIESLKDSWARERAEFQNFKRR 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 429
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.75 E-value=1.8e+02 Score=26.74 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+...|+.+...+...+++|+..+..|.+.++.+|.+-.
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555544433
No 430
>KOG0995|consensus
Probab=40.61 E-value=1.2e+02 Score=32.86 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhhhhchHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQ 266 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQ 266 (328)
+|+..|++.+-.|||-+=-|
T Consensus 308 eE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 308 EEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45666666666666655444
No 431
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.51 E-value=1.8e+02 Score=33.41 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhhh
Q psy4245 247 DQIAKLKAKRRTLK 260 (328)
Q Consensus 247 eEv~~LKQrRRTLK 260 (328)
.++..+++.++.+|
T Consensus 656 ~~~~~l~~~~~~~~ 669 (1201)
T PF12128_consen 656 QDLQRLKNEREQLK 669 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 432
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.38 E-value=82 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy4245 295 SEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 295 ~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+...+...+..||..+..|.+
T Consensus 54 s~r~~~~~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 54 SERNQYKSKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666544
No 433
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.37 E-value=1.5e+02 Score=26.40 Aligned_cols=9 Identities=0% Similarity=-0.056 Sum_probs=5.0
Q ss_pred CCCChhHhh
Q psy4245 222 DLISDDLLM 230 (328)
Q Consensus 222 i~fSDEeLV 230 (328)
.+||.+|=.
T Consensus 14 ~Gft~~QAe 22 (177)
T PF07798_consen 14 AGFTEEQAE 22 (177)
T ss_pred CCCCHHHHH
Confidence 367766533
No 434
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=40.25 E-value=1.4e+02 Score=27.65 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..+.+.+|..++..+..++..+|.++..+..
T Consensus 195 aE~~v~~Le~~id~le~eL~~~k~~~~~~~~ 225 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDELEKEKEKYKKVQE 225 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555543
No 435
>PF14335 DUF4391: Domain of unknown function (DUF4391)
Probab=40.07 E-value=73 Score=29.26 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQ 291 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele 291 (328)
|..+++++..||.++..|+.++.
T Consensus 177 ~~~~~~~i~~L~kei~~L~~~~~ 199 (221)
T PF14335_consen 177 RIERLEQIEKLEKEIAKLKKKIK 199 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666666655443
No 436
>PF11917 DUF3435: Protein of unknown function (DUF3435); InterPro: IPR021842 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 435 to 791 amino acids in length. This family is related to PF00589 from PFAM suggesting it may be an integrase enzyme.
Probab=39.98 E-value=87 Score=31.31 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhch---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNR---GYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 248 Ev~~LKQrRRTLKNR---GYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
++.+|++++..||-+ .|.+.-..+.......++.-...|..++++|+.+..+-.++.
T Consensus 289 ei~~l~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~k~~r~l~~~rqrlr~~~~~~~r~~ 348 (418)
T PF11917_consen 289 EIQELQRRRDELKKEIRREYGSISKAKGTPLYRRYEKLQRELRNERQRLRRELKKEIREE 348 (418)
T ss_pred HHHHHHHHHHHHHhhhhhhccchhhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 566777777778762 332222222222233444444555566666665555544443
No 437
>PHA03185 UL14 tegument protein; Provisional
Probab=39.85 E-value=56 Score=31.20 Aligned_cols=53 Identities=17% Similarity=0.166 Sum_probs=28.5
Q ss_pred CccccC-CCCCCCCCCCCCCCCCCCCCccccccceeeCCCCCCCCCCCCCCCCCCCCCCC
Q psy4245 72 GSVHIQ-SPPHHLLTPPGSSIHPQDYQNSMLHGGVLMYPGTPGTPPDTPPGSNSPPHQHY 130 (328)
Q Consensus 72 ~~~~~~-~~~~~~ltpP~~~~~p~~~q~~~~~~g~l~~~~~p~tpp~tpp~~~s~~~~~~ 130 (328)
+.|+++ .++..+=-|-....||+++-. ..=.||.-..+|.|||..+..++...
T Consensus 150 t~W~Le~aP~v~~~~~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (214)
T PHA03185 150 IMWQLGSAPAVRPGDLSGPGSRPTSGPV------AGGLPGGGAPAPPTPPRPGPTDPASE 203 (214)
T ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCccc
Confidence 568887 444434333344456665432 11134555567788886665555443
No 438
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=39.84 E-value=1.7e+02 Score=22.25 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.+...++..+...+.+.+.+|..+
T Consensus 54 s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 54 SERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444443
No 439
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=39.65 E-value=89 Score=25.19 Aligned_cols=36 Identities=14% Similarity=0.318 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 280 EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++.+.-+...++.|..+++.+..+++.++.+++.+.
T Consensus 76 ~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~ 111 (120)
T PF02996_consen 76 EEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLE 111 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555554443
No 440
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=39.65 E-value=2.8e+02 Score=25.00 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++..++.++..+..-+.+|.+-+..+..+++.+.
T Consensus 139 ~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~~~E 172 (173)
T PF07445_consen 139 EQQQLQQEILALEQRLQRCRQAIEKIEEQIQRRE 172 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677889999999999999999999999888764
No 441
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=39.65 E-value=65 Score=27.83 Aligned_cols=35 Identities=34% Similarity=0.469 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMK-SEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk-~E~~rl~rErd~yK~K~e 312 (328)
++|-.++.|+.|+.+++ .+.+-...|...||+-|-
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~ 39 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYL 39 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHH
Confidence 34555666666666666 333333666666666654
No 442
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=39.65 E-value=2.2e+02 Score=32.45 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=10.2
Q ss_pred ChhHhhcccHHHHHHhc
Q psy4245 225 SDDLLMCLSVRELNKKL 241 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL 241 (328)
-+++|++|+-.|.-.++
T Consensus 145 ~V~~i~~~kp~err~ii 161 (1163)
T COG1196 145 KVEEIINAKPEERRKLI 161 (1163)
T ss_pred cHHHHHcCCHHHHHHHH
Confidence 35666666666655544
No 443
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=39.43 E-value=1.2e+02 Score=24.29 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQI-----VEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl-----~rErd~yK~K~e~L~ 315 (328)
+.+|++|..+|.-+...|..+...+ .+.|..+...++.|.
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv 63 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELV 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 4455555555555555553333332 234444444444443
No 444
>KOG0250|consensus
Probab=39.22 E-value=2.1e+02 Score=33.19 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 287 QQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 287 ~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
+.+++.|++|++.+...+..++.+++.+.....
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 445
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=39.11 E-value=3.2e+02 Score=25.83 Aligned_cols=81 Identities=14% Similarity=0.214 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 234 VRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+++|..-+.-| ++......++|..+++-..+..=...+++... +.....|+.....+..++..+..+.+.+-..+..
T Consensus 70 le~Le~el~~l-~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~--~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~ 146 (256)
T PF14932_consen 70 LEALEEELEAL-QEYKELYEQLRNKLQQLDSSLSQELSELEGKE--EEAQKKLKKAQKELSAECSKLNNELNQLLGEVSK 146 (256)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333 23333344444445554444433333443322 3344445555555555555555555555555555
Q ss_pred HHhc
Q psy4245 314 VMRN 317 (328)
Q Consensus 314 L~~~ 317 (328)
|..+
T Consensus 147 l~~~ 150 (256)
T PF14932_consen 147 LASE 150 (256)
T ss_pred HHHH
Confidence 4443
No 446
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=39.11 E-value=1e+02 Score=28.19 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~r 299 (328)
..+..|..++.+|..+..+
T Consensus 95 ~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 95 KANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 447
>KOG0500|consensus
Probab=39.10 E-value=57 Score=34.84 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=59.5
Q ss_pred HhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchH------HHHHhHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHH
Q psy4245 228 LLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRG------YAQNCRSKRLHQR-QE-LEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 228 eLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRG------YAQnCRkKRLqq~-~~-LE~E~~~L~~Ele~Lk~E~~r 299 (328)
+|-.+|-+||=+.|+-.+++...++..-|.-|+-+| +++.|+....++. .+ ||.+...|+..++.+..|..
T Consensus 407 DlfvLskdDl~~aL~eYP~a~~~L~~kgr~iL~kd~lld~~~~~~~~~~~d~~E~~~~~Le~~~~~l~~Rl~~i~~e~~- 485 (536)
T KOG0500|consen 407 DLFVLSKDDLWEALSEYPDARKRLEEKGRQILHKDGLLDENELGAMQDPSDDEEKRDESLENEVVLLQLRLARILDEYH- 485 (536)
T ss_pred eeeEeeHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHhhhh-
Confidence 477899999999999999999888866677676665 6777877544332 22 67777777766665555544
Q ss_pred HHHHHHHHHHHHHHHHhc
Q psy4245 300 IVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 300 l~rErd~yK~K~e~L~~~ 317 (328)
.....+|+++..|...
T Consensus 486 --~~~~km~qr~~~le~~ 501 (536)
T KOG0500|consen 486 --SSQQKMKQRLSVLEKQ 501 (536)
T ss_pred --hhhHHHHHHHHHHHHH
Confidence 3445566666665544
No 448
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.08 E-value=1.2e+02 Score=25.03 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.|.....+|+.+++.|..+...+...+..|..-.+.|...
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777777777777666666554
No 449
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=38.96 E-value=2.4e+02 Score=32.94 Aligned_cols=38 Identities=5% Similarity=0.138 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
++.+....+.+++++..++..+.++++.++.+++.|..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~ 325 (1353)
T TIGR02680 288 ARDELETAREEERELDARTEALEREADALRTRLEALQG 325 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33344444444444444444455555555555555543
No 450
>PF13035 DUF3896: Protein of unknown function (DUF3896)
Probab=38.91 E-value=71 Score=25.03 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKM---KSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~L---k~E~~rl~rErd~yK~K~e 312 (328)
+..||-.+.+|..++..+ .+|.+++..|+|.|.--+.
T Consensus 11 kk~lelkkq~lc~kls~~~ls~~er~qi~~eidnyeyiln 50 (61)
T PF13035_consen 11 KKYLELKKQQLCKKLSSMHLSEKEREQIKLEIDNYEYILN 50 (61)
T ss_pred HHHHHHHHHHHHHHHhhcccCHHHHHHHHhhhhhHHHHHH
Confidence 456777888888888776 4788899999999875544
No 451
>PRK10698 phage shock protein PspA; Provisional
Probab=38.89 E-value=1.8e+02 Score=27.11 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
+..|+.+.......+++|+..+.+|...+..+|.|-
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333
No 452
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=38.82 E-value=3.2e+02 Score=27.53 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhch-----HHHHHhHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 249 IAKLKAKRRTLKNR-----GYAQNCRSKRLHQR----QELEVTNKHLQ-QQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 249 v~~LKQrRRTLKNR-----GYAQnCRkKRLqq~----~~LE~E~~~L~-~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|..||+-+.+|-+. .|.-|-=.|||.++ .+||.....-+ ..+.+|.+.+.++.+|...+...++.|.+
T Consensus 86 l~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~ 163 (310)
T PF09755_consen 86 LQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRR 163 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455555555322 23344555555443 23333332222 23456666666666666666666666554
No 453
>PF14282 FlxA: FlxA-like protein
Probab=38.81 E-value=2.1e+02 Score=23.85 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
.+|..|.+.-..|++-... --.-|.+++..|..++..|+.+|..|..+..+-...
T Consensus 26 ~Qi~~Lq~ql~~l~~~~~~--~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 26 KQIKQLQEQLQELSQDSDL--DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHcccCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777666666652111 223445777777777777777777777776655443
No 454
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=38.80 E-value=1.2e+02 Score=24.97 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSE 296 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E 296 (328)
+.++.+|.+..=-..++..+.+.
T Consensus 21 qgLe~~Er~r~Wy~~qL~~vq~r 43 (84)
T PF11414_consen 21 QGLEMEERERDWYQQQLQSVQER 43 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 455
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=38.62 E-value=1.1e+02 Score=25.79 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.3
Q ss_pred ChhHhhcccHHHHHHhc
Q psy4245 225 SDDLLMCLSVRELNKKL 241 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL 241 (328)
++.+||+.-++|||.+|
T Consensus 2 ~NkDlIs~gmkeFn~lL 18 (89)
T PF09236_consen 2 ANKDLISTGMKEFNVLL 18 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 46789999999999999
No 456
>PF14282 FlxA: FlxA-like protein
Probab=38.57 E-value=1.1e+02 Score=25.46 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.+|..|+.+--.|+.....-.-- +-++ -+.-......|+.+|..|..++.++..+...-.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~-~~~~-~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD-SDLD-AEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-cCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888887777776544321110 0010 112233444577777777777777766654443
No 457
>PRK14156 heat shock protein GrpE; Provisional
Probab=38.42 E-value=77 Score=29.09 Aligned_cols=23 Identities=4% Similarity=0.133 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
|+.+++.|+....++.-|.+.||
T Consensus 39 l~~e~~elkd~~lR~~AEfeN~r 61 (177)
T PRK14156 39 ANERADEFENKYLRAHAEMQNIQ 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 458
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.37 E-value=1.7e+02 Score=25.06 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhchHHHHHhHHHHHHHHHH
Q psy4245 249 IAKLKAKRRTLKNRGYAQNCRSKRLHQRQE 278 (328)
Q Consensus 249 v~~LKQrRRTLKNRGYAQnCRkKRLqq~~~ 278 (328)
-..|+.+.+.+..-..|++=-.+|..+...
T Consensus 106 k~~l~~R~~~~~~~~~~~~~l~~k~~~~~k 135 (218)
T cd07596 106 KETLDDRADALLTLQSLKKDLASKKAQLEK 135 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 459
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=38.35 E-value=1.9e+02 Score=24.53 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.+.|+.+|+.=.++|..|++.-.++++.+..++
T Consensus 67 r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 67 RKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444555555555444
No 460
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=38.29 E-value=2.2e+02 Score=25.96 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKM 293 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~L 293 (328)
|.|.+.....++++...++.++++|
T Consensus 110 R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 110 RQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444
No 461
>KOG0239|consensus
Probab=38.18 E-value=2.4e+02 Score=30.84 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=22.6
Q ss_pred hhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 257 RTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 257 RTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
...++.-+...|..++-. +..|..+...|++....|+.+...+.++.+.
T Consensus 225 ~~~~~~~l~~~~~~~~~~-i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~ 273 (670)
T KOG0239|consen 225 LRRNIKPLEGLESTIKKK-IQALQQELEELKAELKELNDQVSLLTREVQE 273 (670)
T ss_pred HHHhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665443 4444444444444444443333333333333
No 462
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.18 E-value=99 Score=25.14 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..|...++.+..++.++....+.+..++..|..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~ 98 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQE 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555443
No 463
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=38.03 E-value=2.2e+02 Score=23.21 Aligned_cols=69 Identities=17% Similarity=0.316 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhhchH-----HHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 248 QIAKLKAKRRTLKNRG-----YAQNCRSKRLHQRQELEVTNKH---LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRG-----YAQnCRkKRLqq~~~LE~E~~~---L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+-..|+++...|+... +-..|-.|+.......+.+... ...++..|..+++.+..+++.+..+++.+..
T Consensus 33 ~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 33 REEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555554432 3344555555555444444433 5688888888888888888888888877654
No 464
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=38.00 E-value=1.3e+02 Score=26.84 Aligned_cols=48 Identities=25% Similarity=0.485 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEV---TNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~---E~~~L~~Ele~Lk~E~~ 298 (328)
.+.++..++..|-.+|.-..-++ .++..|.. .+..|+.+++.|+.++.
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d------~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEAD------KQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45666677777777766554433 23333333 55556666666666655
No 465
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=37.99 E-value=2.1e+02 Score=23.42 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQ----ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~----~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
++.+++.+|+.++. ||+=|..-.-=+.=++... ..+.-...|+.+++.|..+++++.+-++.++...+
T Consensus 39 Y~~~~i~~l~~I~~-lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~ 110 (123)
T cd04770 39 YGEADLARLRFIRR-AQALGFSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAELQALRAELAGLLS 110 (123)
T ss_pred CCHHHHHHHHHHHH-HHHCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777765 4555443222111111110 01122334566666666666666655555555443
No 466
>PF12938 M_domain: M domain of GW182
Probab=37.88 E-value=53 Score=31.72 Aligned_cols=12 Identities=8% Similarity=0.116 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAK 255 (328)
Q Consensus 244 LSkeEv~~LKQr 255 (328)
|..+-+.+|.|.
T Consensus 144 L~pqtL~LLnQL 155 (235)
T PF12938_consen 144 LAPQTLTLLNQL 155 (235)
T ss_pred CCHHHHHHHHHH
Confidence 555666666554
No 467
>cd01279 HTH_HspR-like Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator HspR and related proteins, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=37.84 E-value=78 Score=25.55 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
+|.+++..|+.+++--++-|+-- ..+.....|. .+++.|++++..+..|+..
T Consensus 39 Ys~~dv~~l~~I~~L~~~~G~~l----~~i~~~l~l~-------~~~~~l~~~~~~~~~~~~~ 90 (98)
T cd01279 39 YSNNDLELLRQVQRLSQDEGFNL----AGIKRIIELY-------PQVLLLQCRSCEHATELIG 90 (98)
T ss_pred ECHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHhh-------hHHHHHHHHHHHHHHHHHh
Confidence 66777777777665443344432 2344444433 4444444444444444443
No 468
>PF14182 YgaB: YgaB-like protein
Probab=37.83 E-value=1.2e+02 Score=25.07 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 274 HQRQELEVTNKHLQ--QQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 274 qq~~~LE~E~~~L~--~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
+-+.+.|.+...|+ +++..++.|+.++++++..+...+++-+..+.
T Consensus 24 ERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI 71 (79)
T PF14182_consen 24 ERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFEKQTEEVI 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554 56777788888888888888877776655443
No 469
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=37.82 E-value=55 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+..+.+.+|-..|+++...|+.|.+++..|...+.+.|-..+.-
T Consensus 23 es~drIKeEf~~lqaq~hslk~E~eKla~EK~emqrhyvmyyEm 66 (135)
T PF03920_consen 23 ESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYVMYYEM 66 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcchhhcccchHHHHHHHHhcc
Confidence 44455556666788888888888888888888877777665543
No 470
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=37.69 E-value=87 Score=34.38 Aligned_cols=16 Identities=6% Similarity=-0.026 Sum_probs=8.2
Q ss_pred CChhHhhcccHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNK 239 (328)
Q Consensus 224 fSDEeLVsmSVrELNr 239 (328)
|..-++..++-.=+++
T Consensus 491 ~~iA~~~Glp~~ii~~ 506 (782)
T PRK00409 491 FEIAKRLGLPENIIEE 506 (782)
T ss_pred HHHHHHhCcCHHHHHH
Confidence 3444555555555554
No 471
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=37.60 E-value=2.1e+02 Score=22.90 Aligned_cols=60 Identities=13% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 242 HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|+|-++|..+-+....... ..++.-...+..++..+..++.++......++.+++.+..
T Consensus 56 ~G~~L~~I~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~ 115 (124)
T COG0789 56 LGFSLAEIKELLDLLSAGES---------------IALELRERLLAERLEELEAKIAELQRIEEELRDKLKHLIE 115 (124)
T ss_pred cCCCHHHHHHHHhcccccch---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888887777665444 1222222334444444444444444455555555555544
No 472
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.59 E-value=99 Score=30.44 Aligned_cols=41 Identities=12% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++++|-+++..|+.+.+.++.++.++..|...+..++..|.
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 34555566666666666666666666666666666665554
No 473
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.47 E-value=1.6e+02 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.488 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
++.++..|+..++.+..+++.++.+
T Consensus 45 ~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 45 LEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 474
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=37.43 E-value=2.8e+02 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy4245 291 QKMKSEIKQIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 291 e~Lk~E~~rl~rErd~yK~K~e~L~~~~ 318 (328)
+-|..=+..+-.-+..||.|+..|-..+
T Consensus 87 dDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 87 DDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 3333334445566777888888876655
No 475
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.40 E-value=2.3e+02 Score=25.64 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRL---HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRL---qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
+-+++..|...=|..++|.+--+--..+- +.+... .+-..++-++..++.+-.+|...||.+..++..|...+.+
T Consensus 46 ~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AY-e~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 46 VIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAY-EEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777776665555432 223332 3445588888888888888888888888888888766543
No 476
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=37.40 E-value=1.3e+02 Score=31.56 Aligned_cols=46 Identities=9% Similarity=0.315 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEI-------------KQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~-------------~rl~rErd~yK~K~e~L~~ 316 (328)
|++..+..||.++..|+.+++.|..++ .++..|.+..+..++.|+.
T Consensus 565 ~~~~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (635)
T PRK11147 565 KLQRELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFE 623 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446677777777776665554443 4445556666666665543
No 477
>KOG0993|consensus
Probab=37.36 E-value=1.4e+02 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.+||.+...-...-++|+.=..-+.+|++++|.|+
T Consensus 137 ~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl 171 (542)
T KOG0993|consen 137 LDLENEMDKAKEDEEKLRELVTPMEKEINELKKKL 171 (542)
T ss_pred hhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555544444444444444444445555554443
No 478
>PF14265 DUF4355: Domain of unknown function (DUF4355)
Probab=37.32 E-value=2.4e+02 Score=23.34 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
+++...+.-+.+...+..+++.+..+++
T Consensus 39 ~k~~~~ek~~~e~~~~~~el~~~~~e~~ 66 (125)
T PF14265_consen 39 AKMSAEEKAQEELEELEKELEELEAELA 66 (125)
T ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444
No 479
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=37.27 E-value=89 Score=34.28 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+..||.+...++.+++.+.++++++.+.+..|+.+++.|..
T Consensus 517 i~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.20 E-value=1.1e+02 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+..|.....+|+.+++.|...+..+...+..++.-.+.|
T Consensus 1 ~qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 1 LQQLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG4657|consensus
Probab=37.19 E-value=3e+02 Score=26.97 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred cHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 233 SVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 233 SVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+.+.+|+.|+.||..++..-+-.-=-.- ++|=-++...-+.+=+.....+++++..++.|++.+.+-++.+|.++.
T Consensus 42 ~~nS~~efar~lS~~~~e~e~l~~~l~e----tene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 42 SMNSLVEFARALSQSQVELENLKADLRE----TENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHh
Q psy4245 313 IVMR 316 (328)
Q Consensus 313 ~L~~ 316 (328)
.+..
T Consensus 118 d~ke 121 (246)
T KOG4657|consen 118 DSKE 121 (246)
T ss_pred hHHH
No 482
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=37.15 E-value=77 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
+.|-.|+.+|++..++|+..++++.
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
No 483
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=37.13 E-value=80 Score=29.62 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q psy4245 222 DLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQEL--EVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 222 i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L--E~E~~~L~~Ele~Lk~E~~r 299 (328)
|+++.-.|-.=..+||=+.+++..++--..||.+||...+.. |..++... |++.+.++.++++|..+--.
T Consensus 100 IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~i--------KK~~K~~~isEDe~k~~e~~iQKlTd~yi~ 171 (187)
T COG0233 100 IRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKI--------KKLEKDKEISEDEVKKAEEEIQKLTDEYIK 171 (187)
T ss_pred EEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhccCCcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q psy4245 300 IVEERNHYKKQ 310 (328)
Q Consensus 300 l~rErd~yK~K 310 (328)
-.-+.-.-|.+
T Consensus 172 ~iD~~~~~KEk 182 (187)
T COG0233 172 KIDELLKDKEK 182 (187)
T ss_pred HHHHHHHHHHH
No 484
>KOG2751|consensus
Probab=37.09 E-value=1.4e+02 Score=31.36 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=0.0
Q ss_pred CChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
+.+++=...+..+|-..+..+.++|...+-++.+.+|+.---.+==++.-...++|..+..+..++-...+.++-....|
T Consensus 168 ~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~de 247 (447)
T KOG2751|consen 168 RLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDE 247 (447)
T ss_pred HHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch
Q ss_pred HHHHHHHHH
Q psy4245 304 RNHYKKQYE 312 (328)
Q Consensus 304 rd~yK~K~e 312 (328)
++.++.+++
T Consensus 248 l~Sle~q~~ 256 (447)
T KOG2751|consen 248 LDSLEAQIE 256 (447)
T ss_pred HHHHHHHHH
No 485
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.96 E-value=1.6e+02 Score=29.20 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 267 NCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 267 nCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|=+..=+.|+.-|.+++..|+..+..|++|...-.++....|..+..|+.
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~ 154 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLRE 154 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=36.88 E-value=1.3e+02 Score=29.86 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=0.0
Q ss_pred chHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 261 NRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 261 NRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
++.-+-..+.+.+ .+++.|+..+..|..+++.++.++.++.++.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>KOG0971|consensus
Probab=36.68 E-value=3.2e+02 Score=31.79 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 234 VRELNKKL---HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 234 VrELNrlL---~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
|+||...| ++=-.|+..+||--=|--=-=---|-.|+|=++++-.|+.+...-+.+.+.+..-.++.++|++..-..
T Consensus 233 vrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~ 312 (1243)
T KOG0971|consen 233 VRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADA 312 (1243)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q psy4245 311 YEIVM 315 (328)
Q Consensus 311 ~e~L~ 315 (328)
+|.++
T Consensus 313 iEmaT 317 (1243)
T KOG0971|consen 313 IEMAT 317 (1243)
T ss_pred HHHHH
No 488
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=36.67 E-value=77 Score=24.05 Aligned_cols=26 Identities=12% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
+..++.+|.++++.+..+++.+..++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=36.61 E-value=1.1e+02 Score=26.61 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
+..+.+|+.|+.....++...-+|.+.+...++..
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG4010|consensus
Probab=36.53 E-value=1e+02 Score=29.32 Aligned_cols=38 Identities=8% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.++++|-.|...++.||..|+.=++.-.+-..++|+|+
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.38 E-value=2.4e+02 Score=24.78 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 265 AQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 265 AQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|-.+-+|.| +.+..|.....+..+-.+..+.|+..+......++..++.+..
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 492
>PRK00106 hypothetical protein; Provisional
Probab=36.16 E-value=2.6e+02 Score=29.83 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 250 AKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 250 ~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+++++|.+|+.|--. =.+|.++.+.=+.+....+.++++...++....++.+..+.+++.+..
T Consensus 90 kel~eEr~rL~qrE~r---L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~ 153 (535)
T PRK00106 90 QEFKSERQELKQIESR---LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEE 153 (535)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.13 E-value=2.3e+02 Score=28.05 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 259 LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 259 LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.++.|...++.+ ...++..+..+...+.+++.+..|+.+..+|...++.++.....
T Consensus 179 ~Ea~e~~~~~~~~-e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~ 235 (269)
T PF05278_consen 179 LEAKEIYDQHETR-EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKG 235 (269)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.92 E-value=3.4e+02 Score=26.82 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.++..|++.-.-+.|---+.-=+.| ..+..+..++...+.+++.++.+++.+...+...+.+...+..
T Consensus 185 ~~e~~~L~~~~~e~~~~d~~eL~~lk--~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 185 EEELRQLKQLEDELEDCDPTELDRAK--EKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHhHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=35.88 E-value=82 Score=25.22 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
+-++.+++..|+.++. ||+-|+.-.==++=++.... +-+..|+.+++.|.++++++..
T Consensus 37 R~Y~~~~l~~l~~I~~-lr~~G~~l~eI~~~l~~~~~--~~~~~l~~~~~~l~~~i~~l~~ 94 (96)
T cd04788 37 RLYDRADIRRLHQIIA-LRRLGFSLREIGRALDGPDF--DPLELLRRQLARLEEQLELATR 94 (96)
T ss_pred eeeCHHHHHHHHHHHH-HHHcCCCHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHh
No 496
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.81 E-value=2.7e+02 Score=23.60 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKH-LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAE 324 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~-L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~~ 324 (328)
.+++......-..+++-.=+|..+.+..+...+=|-.+.. ....+..|+.+...+..++..++...+.........+++
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~s 95 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEAS 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=35.78 E-value=2.9e+02 Score=23.83 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCHHHHHHHH----HHHhhhhchHH--HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 244 YPRDQIAKLK----AKRRTLKNRGY--AQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 244 LSkeEv~~LK----QrRRTLKNRGY--AQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|..|..+.| |+=.+.-|+.+ ||-=..++| +....+..++..|+.+++..-+-+..+...++.+-.|++.|.+
T Consensus 23 VT~kef~efKd~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~E~ 102 (102)
T PF01519_consen 23 VTHKEFDEFKDSNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKMES 102 (102)
T ss_dssp -BHHHHHHH---HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 498
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=35.66 E-value=2e+02 Score=29.79 Aligned_cols=77 Identities=17% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhHhhccc------HHHHHHhc--CCCCHHHHHHHHHHHhh-hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 226 DDLLMCLS------VRELNKKL--HGYPRDQIAKLKAKRRT-LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSE 296 (328)
Q Consensus 226 DEeLVsmS------VrELNrlL--~GLSkeEv~~LKQrRRT-LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E 296 (328)
.++++.+. -.+|-..| .||++.|...|=..|=. |- ...++.|++|...|+.+++.|+.-
T Consensus 360 id~vi~~ir~s~~ak~~L~~~l~~~~~~~~qa~~IL~m~L~~LT------------~~e~~kL~~E~~~l~~ei~~l~~~ 427 (445)
T cd00187 360 IDEVINLIRSSDEAKKALIEELEKLGFSEIQADAILDMRLRRLT------------KLEREKLLKELKELEAEIEDLEKI 427 (445)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCCHHHHHHHHHhHHHHhh------------hhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 297 IKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 297 ~~rl~rErd~yK~K~e~L 314 (328)
++.-.+-.+.++..++++
T Consensus 428 l~~~~~~~~~i~~eL~~~ 445 (445)
T cd00187 428 LASEERPKDLWKEELDEF 445 (445)
T ss_pred hcChHHHHHHHHHHHHhC
No 499
>PRK10869 recombination and repair protein; Provisional
Probab=35.54 E-value=2.4e+02 Score=29.61 Aligned_cols=67 Identities=9% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 234 VRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 234 VrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
...+|++- +|.|-+++...++.-+ ++++...+.+.....|+.++++++.++.++..++.....+.
T Consensus 305 l~~l~~L~rKyg~~~~~~~~~~~~l~-------------~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 305 LSKQISLARKHHVSPEELPQHHQQLL-------------EEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-------------HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q psy4245 312 EI 313 (328)
Q Consensus 312 e~ 313 (328)
-.
T Consensus 372 A~ 373 (553)
T PRK10869 372 AK 373 (553)
T ss_pred HH
No 500
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=35.50 E-value=1.7e+02 Score=28.27 Aligned_cols=67 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAE 324 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~~ 324 (328)
++|+.+|+..-+. ..-.......+++.+++..+++|..|..+-.+-....+.++..-..+-|.+...
T Consensus 30 ~~ei~~L~~~i~~------------~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~ 96 (298)
T PF11262_consen 30 DEEIERLEKEISQ------------MSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDP 96 (298)
T ss_pred HHHHHHHHHHHHH------------hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCh
Done!