Query psy4245
Match_columns 328
No_of_seqs 111 out of 158
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 20:31:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wt7_B Transcription factor MA 100.0 1E-35 3.5E-40 239.7 10.7 89 227-315 1-89 (90)
2 3a5t_A Transcription factor MA 100.0 1.6E-35 5.5E-40 244.7 -1.0 100 219-318 3-102 (107)
3 1skn_P DNA-binding domain of S 99.8 5.7E-21 1.9E-25 154.4 5.7 70 212-281 19-90 (92)
4 2kz5_A Transcription factor NF 99.8 2.5E-21 8.7E-26 156.2 -0.1 65 212-276 23-89 (91)
5 2lz1_A Nuclear factor erythroi 99.8 8.2E-22 2.8E-26 158.8 -6.3 66 211-276 22-89 (90)
6 2wt7_A Proto-oncogene protein 99.1 2.4E-10 8.3E-15 85.4 9.5 60 253-312 2-61 (63)
7 1jnm_A Proto-oncogene C-JUN; B 99.0 4.2E-10 1.4E-14 83.7 6.0 60 253-312 1-60 (62)
8 1t2k_D Cyclic-AMP-dependent tr 99.0 1.5E-09 5.2E-14 80.3 8.3 59 253-311 1-59 (61)
9 1ci6_A Transcription factor AT 98.8 2.5E-08 8.6E-13 74.8 8.4 61 252-312 1-61 (63)
10 1dh3_A Transcription factor CR 98.6 7E-08 2.4E-12 70.9 5.9 51 253-303 1-51 (55)
11 2dgc_A Protein (GCN4); basic d 98.4 2.5E-07 8.7E-12 69.6 5.8 51 254-304 10-60 (63)
12 1hjb_A Ccaat/enhancer binding 98.0 2.3E-05 7.9E-10 62.7 8.7 66 254-319 16-81 (87)
13 1gu4_A CAAT/enhancer binding p 97.9 2.6E-05 8.9E-10 61.2 7.0 59 253-311 15-73 (78)
14 1gd2_E Transcription factor PA 97.8 6.2E-05 2.1E-09 58.1 7.3 60 255-314 10-69 (70)
15 3iv1_A Tumor susceptibility ge 91.7 1.6 5.4E-05 34.4 9.6 64 254-317 11-75 (78)
16 2c9l_Y EB1, zebra, BZLF1 trans 91.4 0.64 2.2E-05 35.1 6.7 23 256-278 4-26 (63)
17 3oja_B Anopheles plasmodium-re 91.3 1.8 6E-05 41.8 11.6 51 270-320 533-583 (597)
18 2jee_A YIIU; FTSZ, septum, coi 91.2 0.68 2.3E-05 36.8 7.1 40 278-317 38-77 (81)
19 1gmj_A ATPase inhibitor; coile 90.8 1.7 5.8E-05 34.8 9.0 55 262-316 25-79 (84)
20 3s4r_A Vimentin; alpha-helix, 89.7 3.7 0.00013 32.6 10.2 80 234-316 11-91 (93)
21 4dzn_A Coiled-coil peptide CC- 88.8 0.94 3.2E-05 30.3 5.1 30 282-311 3-32 (33)
22 3gp4_A Transcriptional regulat 87.5 9.7 0.00033 31.5 11.9 91 224-326 41-139 (142)
23 1nkp_B MAX protein, MYC proto- 87.1 1.4 4.9E-05 33.5 6.1 49 267-315 30-81 (83)
24 1deb_A APC protein, adenomatou 86.5 3.5 0.00012 30.5 7.5 45 273-317 9-53 (54)
25 3mq7_A Bone marrow stromal ant 86.4 3.3 0.00011 35.1 8.4 39 275-313 72-110 (121)
26 3mq7_A Bone marrow stromal ant 85.6 4.2 0.00014 34.4 8.6 56 262-317 45-100 (121)
27 3nmd_A CGMP dependent protein 85.0 1.5 5.1E-05 34.2 5.2 37 271-307 30-66 (72)
28 3gp4_A Transcriptional regulat 83.8 5.5 0.00019 33.0 8.6 74 243-317 40-117 (142)
29 1nlw_A MAD protein, MAX dimeri 83.5 3.8 0.00013 31.6 7.0 31 284-314 50-80 (80)
30 3gpv_A Transcriptional regulat 83.4 3.3 0.00011 34.4 7.1 63 242-313 72-134 (148)
31 3lay_A Zinc resistance-associa 83.3 11 0.00037 33.1 10.7 24 243-266 67-90 (175)
32 2v71_A Nuclear distribution pr 82.6 2.6 8.9E-05 37.8 6.5 41 277-317 45-85 (189)
33 2yy0_A C-MYC-binding protein; 82.4 2.2 7.6E-05 31.0 5.0 31 282-312 20-50 (53)
34 3efg_A Protein SLYX homolog; x 81.8 5.7 0.00019 30.7 7.4 43 275-317 15-57 (78)
35 4dzn_A Coiled-coil peptide CC- 81.7 2.7 9.4E-05 28.1 4.7 28 289-316 3-30 (33)
36 3m9b_A Proteasome-associated A 81.5 1.5 5.2E-05 40.9 4.8 42 276-317 56-97 (251)
37 1nkp_A C-MYC, MYC proto-oncoge 81.1 4.5 0.00015 31.6 6.7 46 271-316 39-87 (88)
38 3hnw_A Uncharacterized protein 80.9 2.3 7.9E-05 35.9 5.3 40 278-317 86-125 (138)
39 3okq_A BUD site selection prot 80.4 5.4 0.00018 34.5 7.5 61 260-320 7-79 (141)
40 3q8t_A Beclin-1; autophagy, AT 80.1 14 0.00049 29.3 9.4 76 237-312 9-84 (96)
41 1wle_A Seryl-tRNA synthetase; 79.9 21 0.00073 35.6 12.7 95 223-317 39-152 (501)
42 3hnw_A Uncharacterized protein 79.9 14 0.00049 31.1 9.9 44 273-316 88-131 (138)
43 3cve_A Homer protein homolog 1 79.7 7.1 0.00024 30.3 7.2 43 274-316 7-49 (72)
44 4e61_A Protein BIM1; EB1-like 79.7 5.4 0.00019 33.0 7.0 38 276-313 13-50 (106)
45 1ses_A Seryl-tRNA synthetase; 79.4 12 0.00041 36.3 10.5 76 242-317 21-100 (421)
46 3mq9_A Bone marrow stromal ant 78.0 13 0.00044 35.1 10.0 54 262-315 417-470 (471)
47 1t2k_D Cyclic-AMP-dependent tr 78.0 4.2 0.00014 29.5 5.3 27 276-302 31-57 (61)
48 2dq0_A Seryl-tRNA synthetase; 77.6 13 0.00043 36.6 10.1 72 246-317 30-105 (455)
49 3cvf_A Homer-3, homer protein 77.4 8.7 0.0003 30.2 7.2 43 274-316 13-55 (79)
50 1wle_A Seryl-tRNA synthetase; 77.3 7.9 0.00027 38.7 8.7 35 273-307 69-103 (501)
51 1deb_A APC protein, adenomatou 77.1 5.1 0.00018 29.7 5.4 34 284-317 6-39 (54)
52 3tnu_B Keratin, type II cytosk 77.0 28 0.00097 28.3 11.2 30 285-314 79-108 (129)
53 2zqm_A Prefoldin beta subunit 77.0 8.1 0.00028 30.1 7.0 45 273-317 69-113 (117)
54 2yy0_A C-MYC-binding protein; 76.9 4.1 0.00014 29.5 4.9 30 288-317 19-48 (53)
55 3q8t_A Beclin-1; autophagy, AT 76.7 9.3 0.00032 30.4 7.4 46 272-317 23-68 (96)
56 3oja_B Anopheles plasmodium-re 76.5 18 0.00062 34.8 10.7 17 248-264 457-473 (597)
57 1hjb_A Ccaat/enhancer binding 76.4 3.7 0.00013 32.6 4.9 31 275-305 44-74 (87)
58 1ci6_A Transcription factor AT 75.9 5.9 0.0002 29.2 5.6 30 274-303 30-59 (63)
59 1r8d_A Transcription activator 75.9 3.5 0.00012 32.2 4.7 27 285-311 79-105 (109)
60 3s9g_A Protein hexim1; cyclin 75.2 20 0.00069 29.6 9.1 28 282-309 66-93 (104)
61 1go4_E MAD1 (mitotic arrest de 74.8 5.5 0.00019 32.6 5.6 33 282-314 13-45 (100)
62 1nkp_B MAX protein, MYC proto- 74.7 4.1 0.00014 30.9 4.6 34 273-306 46-79 (83)
63 3q0x_A Centriole protein; cent 74.6 13 0.00046 34.0 8.8 54 262-315 166-219 (228)
64 2jee_A YIIU; FTSZ, septum, coi 74.3 13 0.00043 29.5 7.4 8 307-314 53-60 (81)
65 3u5c_P 40S ribosomal protein S 74.2 1.6 5.5E-05 37.8 2.5 36 223-258 19-63 (142)
66 1lwu_C Fibrinogen gamma chain; 74.0 9.2 0.00031 36.5 7.9 45 273-317 11-55 (323)
67 3na7_A HP0958; flagellar bioge 73.7 24 0.00082 31.5 10.1 18 247-264 32-49 (256)
68 3trt_A Vimentin; cytoskeleton, 73.5 21 0.00072 26.4 8.2 54 259-315 23-76 (77)
69 1nlw_A MAD protein, MAX dimeri 73.3 6.4 0.00022 30.3 5.5 33 273-305 46-78 (80)
70 1nkp_A C-MYC, MYC proto-oncoge 73.2 7.2 0.00025 30.4 5.8 36 273-308 51-86 (88)
71 3na7_A HP0958; flagellar bioge 73.2 35 0.0012 30.5 11.1 25 248-272 54-78 (256)
72 1gu4_A CAAT/enhancer binding p 73.0 4.9 0.00017 31.3 4.7 26 276-301 45-70 (78)
73 2xdj_A Uncharacterized protein 72.9 7.6 0.00026 30.5 5.9 40 278-317 24-63 (83)
74 2dfs_A Myosin-5A; myosin-V, in 72.4 11 0.00036 41.0 8.7 37 279-315 982-1018(1080)
75 3tnu_A Keratin, type I cytoske 72.1 30 0.001 28.3 9.6 17 248-264 53-69 (131)
76 2xdj_A Uncharacterized protein 72.0 16 0.00053 28.7 7.5 48 270-317 23-70 (83)
77 2wt7_A Proto-oncogene protein 71.9 10 0.00035 27.7 6.1 30 286-315 28-57 (63)
78 1gk4_A Vimentin; intermediate 71.4 28 0.00094 26.7 8.7 52 248-301 2-53 (84)
79 4h22_A Leucine-rich repeat fli 71.1 15 0.00051 30.3 7.4 42 275-316 38-79 (103)
80 2dq0_A Seryl-tRNA synthetase; 70.7 5.6 0.00019 39.1 5.7 49 255-306 14-63 (455)
81 1gd2_E Transcription factor PA 70.5 4.6 0.00016 30.9 4.0 37 280-316 28-64 (70)
82 1uii_A Geminin; human, DNA rep 70.5 19 0.00064 28.7 7.6 35 281-315 46-80 (83)
83 2dq3_A Seryl-tRNA synthetase; 70.3 7.5 0.00026 37.7 6.4 76 242-317 21-104 (425)
84 3qne_A Seryl-tRNA synthetase, 69.7 10 0.00035 38.0 7.4 76 242-317 25-107 (485)
85 1l8d_A DNA double-strand break 69.6 23 0.00078 27.5 8.0 40 274-313 64-103 (112)
86 3hh0_A Transcriptional regulat 69.4 6.5 0.00022 32.7 5.1 51 276-326 89-143 (146)
87 1go4_E MAD1 (mitotic arrest de 69.3 16 0.00056 29.8 7.2 21 294-314 74-94 (100)
88 3s4r_A Vimentin; alpha-helix, 69.0 27 0.00092 27.5 8.3 35 276-310 58-92 (93)
89 3mov_A Lamin-B1; LMNB1, B-type 68.4 24 0.00084 28.0 8.0 54 248-303 13-66 (95)
90 2w6a_A ARF GTPase-activating p 68.2 13 0.00044 28.3 5.9 42 260-301 19-61 (63)
91 1a93_A Coiled coil, LZ, MYC pr 67.7 7.9 0.00027 26.3 4.2 30 285-314 4-33 (34)
92 1q06_A Transcriptional regulat 67.7 24 0.00084 28.6 8.1 31 224-256 39-70 (135)
93 1x8y_A Lamin A/C; structural p 67.7 17 0.00059 28.1 6.9 23 247-269 3-25 (86)
94 3m91_A Proteasome-associated A 67.6 20 0.0007 26.0 6.7 38 277-314 12-49 (51)
95 3m9b_A Proteasome-associated A 67.2 6.6 0.00023 36.7 5.1 37 273-309 60-96 (251)
96 2dq3_A Seryl-tRNA synthetase; 66.9 4.2 0.00015 39.4 3.9 51 254-307 13-63 (425)
97 3m48_A General control protein 66.9 8.6 0.00029 26.1 4.2 24 278-301 4-27 (33)
98 3tnu_B Keratin, type II cytosk 66.9 26 0.00087 28.6 8.1 67 235-304 39-105 (129)
99 3vbb_A Seryl-tRNA synthetase, 66.7 7.8 0.00027 39.2 5.9 52 255-310 19-70 (522)
100 1fxk_A Prefoldin; archaeal pro 66.4 13 0.00045 28.5 6.0 41 273-313 64-104 (107)
101 2xv5_A Lamin-A/C; structural p 66.3 16 0.00056 28.0 6.4 25 274-298 12-36 (74)
102 1x8y_A Lamin A/C; structural p 66.3 22 0.00074 27.6 7.1 23 275-297 36-58 (86)
103 2eqb_B RAB guanine nucleotide 66.3 19 0.00066 29.3 7.0 36 284-319 29-64 (97)
104 3qne_A Seryl-tRNA synthetase, 66.3 36 0.0012 34.1 10.5 32 273-304 32-63 (485)
105 2oqq_A Transcription factor HY 66.1 21 0.00073 25.3 6.3 35 277-311 6-40 (42)
106 3ol1_A Vimentin; structural ge 65.8 17 0.00059 29.6 6.8 33 285-317 66-98 (119)
107 3lss_A Seryl-tRNA synthetase; 65.6 11 0.00038 37.7 6.7 37 273-309 36-72 (484)
108 3ol1_A Vimentin; structural ge 65.4 15 0.00051 30.0 6.4 7 306-312 52-58 (119)
109 3qao_A LMO0526 protein, MERR-l 64.8 10 0.00035 34.2 5.7 30 286-315 81-110 (249)
110 1kd8_A GABH AIV, GCN4 acid bas 64.8 13 0.00046 25.6 4.9 26 278-303 5-30 (36)
111 3w03_C DNA repair protein XRCC 64.6 11 0.00036 33.8 5.7 31 282-312 153-183 (184)
112 3swk_A Vimentin; cytoskeleton, 64.6 11 0.00036 29.5 5.1 31 286-316 47-77 (86)
113 2wt7_B Transcription factor MA 64.0 16 0.00054 29.3 6.1 34 282-315 49-82 (90)
114 4e81_A Chaperone protein DNAK; 63.0 20 0.00069 31.7 7.2 56 259-317 147-206 (219)
115 1jnm_A Proto-oncogene C-JUN; B 62.8 10 0.00035 27.6 4.4 31 285-315 26-56 (62)
116 1r8e_A Multidrug-efflux transp 62.7 5.7 0.0002 34.6 3.6 67 224-307 45-112 (278)
117 1l8d_A DNA double-strand break 62.4 26 0.00087 27.2 7.0 41 276-316 5-45 (112)
118 2ke4_A CDC42-interacting prote 62.3 23 0.0008 28.4 6.8 32 286-317 60-91 (98)
119 4ani_A Protein GRPE; chaperone 62.1 17 0.00058 32.9 6.6 38 276-313 61-98 (213)
120 1kd8_B GABH BLL, GCN4 acid bas 61.6 19 0.00067 24.8 5.3 25 278-302 5-29 (36)
121 3swk_A Vimentin; cytoskeleton, 61.6 12 0.0004 29.2 4.9 13 300-312 26-38 (86)
122 2dgc_A Protein (GCN4); basic d 61.2 11 0.00037 28.0 4.4 27 285-311 34-60 (63)
123 3oja_A Leucine-rich immune mol 61.1 23 0.0008 33.5 7.8 28 285-312 439-466 (487)
124 3nmd_A CGMP dependent protein 60.4 27 0.00092 27.1 6.6 30 286-315 38-67 (72)
125 2lw1_A ABC transporter ATP-bin 60.2 42 0.0014 25.7 7.8 18 298-315 59-76 (89)
126 2oxj_A Hybrid alpha/beta pepti 60.1 12 0.00043 25.4 4.1 24 278-301 5-28 (34)
127 4h22_A Leucine-rich repeat fli 59.7 30 0.001 28.6 7.1 49 269-317 25-73 (103)
128 2l5g_B Putative uncharacterize 59.2 15 0.00051 26.1 4.5 34 284-317 5-38 (42)
129 1i84_S Smooth muscle myosin he 59.1 26 0.00088 37.9 8.5 24 19-42 483-509 (1184)
130 2w6b_A RHO guanine nucleotide 59.0 44 0.0015 24.9 7.2 38 273-310 9-46 (56)
131 1kd8_A GABH AIV, GCN4 acid bas 59.0 17 0.00057 25.1 4.6 25 275-299 9-33 (36)
132 1uo4_A General control protein 58.8 15 0.0005 25.1 4.2 24 278-301 5-28 (34)
133 3hhm_B NISH2 P85alpha; PI3KCA, 58.5 28 0.00094 33.6 7.8 64 248-311 199-263 (373)
134 3ra3_B P2F; coiled coil domain 58.5 9.1 0.00031 24.8 3.0 23 292-314 4-26 (28)
135 3a7o_A Autophagy protein 16; c 58.2 26 0.0009 27.4 6.2 45 272-316 30-74 (75)
136 3mq9_A Bone marrow stromal ant 58.1 20 0.0007 33.7 6.8 89 228-316 352-464 (471)
137 3c3f_A Alpha/beta peptide with 57.9 16 0.00053 25.0 4.2 24 278-301 5-28 (34)
138 2vz4_A Tipal, HTH-type transcr 57.8 11 0.00038 29.3 4.1 26 286-311 79-104 (108)
139 3l9o_A ATP-dependent RNA helic 57.6 18 0.0006 39.1 6.9 78 245-322 852-932 (1108)
140 3c3g_A Alpha/beta peptide with 57.5 15 0.00051 24.9 4.1 24 278-301 4-27 (33)
141 1ik9_A DNA repair protein XRCC 57.5 37 0.0013 30.4 8.0 29 274-302 139-167 (213)
142 2wvr_A Geminin; DNA replicatio 57.4 33 0.0011 31.4 7.6 48 242-299 92-140 (209)
143 1jcd_A Major outer membrane li 57.2 42 0.0015 24.4 6.8 34 276-309 6-39 (52)
144 3sja_C Golgi to ER traffic pro 57.1 26 0.00088 26.8 5.8 45 282-326 7-63 (65)
145 1zww_A SH3-containing GRB2-lik 57.0 20 0.00068 31.8 6.2 63 237-299 139-203 (256)
146 2wq1_A General control protein 56.9 17 0.00057 24.7 4.2 24 278-301 4-27 (33)
147 3ghg_C Fibrinogen gamma chain; 56.9 50 0.0017 32.7 9.4 90 227-317 33-134 (411)
148 4etp_A Kinesin-like protein KA 56.6 37 0.0013 32.7 8.4 43 275-317 18-60 (403)
149 1fxk_C Protein (prefoldin); ar 56.3 38 0.0013 27.1 7.2 43 274-316 88-130 (133)
150 4b4t_K 26S protease regulatory 55.9 19 0.00066 35.0 6.3 40 277-316 52-91 (428)
151 3hh0_A Transcriptional regulat 55.8 22 0.00075 29.4 5.9 32 285-316 84-115 (146)
152 3ra3_A P1C; coiled coil domain 55.4 5.6 0.00019 25.7 1.7 22 278-299 4-25 (28)
153 3he4_A Synzip6; heterodimeric 55.0 11 0.00036 27.7 3.3 45 257-301 6-51 (56)
154 1fmh_A General control protein 54.8 21 0.00072 23.8 4.4 26 278-303 5-30 (33)
155 1wlq_A Geminin; coiled-coil; 2 54.8 44 0.0015 26.6 7.1 17 242-258 15-31 (83)
156 3m91_A Proteasome-associated A 54.8 33 0.0011 24.9 5.8 30 285-314 13-42 (51)
157 3tq7_B Microtubule-associated 54.8 11 0.00038 29.7 3.6 32 283-314 3-34 (82)
158 2v4h_A NF-kappa-B essential mo 54.3 94 0.0032 25.9 10.1 49 269-317 57-105 (110)
159 2efr_A General control protein 54.2 1.1E+02 0.0037 26.5 10.2 43 275-317 106-148 (155)
160 3ra3_A P1C; coiled coil domain 54.2 7.9 0.00027 25.1 2.2 26 290-315 2-27 (28)
161 3lss_A Seryl-tRNA synthetase; 54.0 71 0.0024 31.9 10.1 72 246-317 36-140 (484)
162 2w6a_A ARF GTPase-activating p 53.5 59 0.002 24.7 7.2 44 274-317 13-56 (63)
163 3mud_A DNA repair protein XRCC 53.5 36 0.0012 30.2 7.1 42 263-304 131-172 (175)
164 2z0v_A SH3-containing GRB2-lik 53.4 20 0.00067 31.6 5.5 65 232-296 118-184 (240)
165 2hy6_A General control protein 53.3 20 0.0007 24.4 4.2 24 278-301 5-28 (34)
166 2bni_A General control protein 52.9 21 0.00072 24.3 4.2 24 278-301 5-28 (34)
167 3efg_A Protein SLYX homolog; x 52.3 23 0.00078 27.3 5.0 51 269-319 15-66 (78)
168 2r2v_A GCN4 leucine zipper; co 51.9 22 0.00076 24.2 4.2 24 278-301 5-28 (34)
169 2dfs_A Myosin-5A; myosin-V, in 51.8 87 0.003 34.0 11.1 12 20-31 457-468 (1080)
170 1fmh_A General control protein 51.4 22 0.00076 23.7 4.1 30 282-311 2-31 (33)
171 3tnu_A Keratin, type I cytoske 51.3 96 0.0033 25.2 9.0 72 245-316 36-112 (131)
172 2aze_A Transcription factor DP 51.1 41 0.0014 29.4 7.0 45 273-317 4-51 (155)
173 3gpv_A Transcriptional regulat 50.6 83 0.0028 25.9 8.6 73 244-317 55-131 (148)
174 3w03_C DNA repair protein XRCC 50.2 25 0.00085 31.4 5.6 40 262-305 144-183 (184)
175 2v66_B Nuclear distribution pr 49.9 82 0.0028 26.0 8.3 33 276-308 37-69 (111)
176 1ic2_A Tropomyosin alpha chain 49.7 66 0.0023 24.3 7.2 28 286-313 39-66 (81)
177 3mtu_A Tropomyosin alpha-1 cha 49.6 53 0.0018 25.0 6.6 29 286-314 14-42 (75)
178 3hls_A Guanylate cyclase solub 49.4 54 0.0018 24.4 6.5 36 286-321 22-57 (66)
179 1fxk_C Protein (prefoldin); ar 49.3 44 0.0015 26.7 6.5 42 276-317 3-44 (133)
180 2ve7_A Kinetochore protein HEC 49.2 13 0.00043 34.9 3.7 31 273-303 184-214 (315)
181 3u06_A Protein claret segregat 49.1 34 0.0012 33.2 6.9 41 276-316 19-59 (412)
182 3a7p_A Autophagy protein 16; c 49.0 53 0.0018 28.7 7.3 57 247-304 68-126 (152)
183 3opc_A Uncharacterized protein 48.5 1E+02 0.0034 25.1 8.7 66 232-302 4-69 (154)
184 1vcs_A Vesicle transport throu 48.4 89 0.003 24.6 8.1 31 291-321 70-100 (102)
185 2zxx_A Geminin; coiled-coil, c 48.0 50 0.0017 26.0 6.4 56 243-308 12-68 (79)
186 1m1j_C Fibrinogen gamma chain; 47.9 45 0.0015 32.8 7.5 47 271-317 88-134 (409)
187 1ses_A Seryl-tRNA synthetase; 47.8 29 0.00099 33.6 6.1 31 276-306 66-96 (421)
188 1t6f_A Geminin; coiled-coil, c 47.6 38 0.0013 23.4 4.9 18 286-303 12-29 (37)
189 2gd5_A Charged multivesicular 47.6 53 0.0018 27.9 7.1 45 230-274 19-69 (179)
190 3u59_A Tropomyosin beta chain; 47.5 99 0.0034 24.2 8.6 16 290-305 46-61 (101)
191 2zhg_A Redox-sensitive transcr 47.1 18 0.0006 30.3 4.0 10 243-252 67-76 (154)
192 3v86_A De novo design helix; c 46.9 33 0.0011 22.0 4.2 22 278-299 4-25 (27)
193 3mov_A Lamin-B1; LMNB1, B-type 46.8 33 0.0011 27.3 5.3 23 276-298 46-68 (95)
194 3rrk_A V-type ATPase 116 kDa s 46.6 43 0.0015 30.6 6.8 43 276-318 94-139 (357)
195 1kd8_B GABH BLL, GCN4 acid bas 46.6 49 0.0017 22.8 5.3 29 283-311 3-31 (36)
196 2zxx_A Geminin; coiled-coil, c 46.5 59 0.002 25.6 6.6 39 277-315 30-68 (79)
197 1deq_A Fibrinogen (alpha chain 46.3 1E+02 0.0035 30.5 9.6 37 228-264 63-102 (390)
198 1joc_A EEA1, early endosomal a 46.2 87 0.003 25.5 7.9 35 274-308 11-45 (125)
199 1i84_S Smooth muscle myosin he 45.9 91 0.0031 33.7 10.1 20 246-265 856-875 (1184)
200 3u1c_A Tropomyosin alpha-1 cha 45.9 1.1E+02 0.0037 24.2 8.6 34 279-312 42-75 (101)
201 1g6u_A Domain swapped dimer; d 45.8 29 0.001 24.7 4.3 27 289-315 21-47 (48)
202 1m1j_B Fibrinogen beta chain; 45.7 1.1E+02 0.0037 30.7 9.9 20 225-244 93-112 (464)
203 1gk4_A Vimentin; intermediate 45.6 98 0.0034 23.6 10.5 32 283-314 28-59 (84)
204 2ve7_C Kinetochore protein NUF 45.6 15 0.00051 33.5 3.5 41 269-309 136-176 (250)
205 3o0z_A RHO-associated protein 45.4 78 0.0027 27.9 7.9 30 277-306 93-122 (168)
206 3myf_A Sensor protein; HPT, hi 45.2 33 0.0011 27.3 5.2 59 250-310 50-115 (119)
207 1r8e_A Multidrug-efflux transp 45.2 71 0.0024 27.6 7.7 70 244-316 45-114 (278)
208 2p22_A Suppressor protein STP2 44.2 64 0.0022 28.4 7.2 40 276-315 51-90 (174)
209 3swy_A Cyclic nucleotide-gated 43.8 73 0.0025 22.7 6.1 39 278-316 2-44 (46)
210 1gmj_A ATPase inhibitor; coile 43.8 83 0.0028 25.1 7.1 27 283-309 53-79 (84)
211 3oja_A Leucine-rich immune mol 43.6 2E+02 0.0069 27.0 11.1 24 286-309 426-449 (487)
212 3sjb_C Golgi to ER traffic pro 43.5 75 0.0026 25.7 6.9 31 286-316 54-84 (93)
213 3m48_A General control protein 43.4 38 0.0013 22.9 4.3 26 284-309 3-28 (33)
214 3htk_A Structural maintenance 43.1 56 0.0019 22.9 5.5 26 286-311 31-56 (60)
215 4e61_A Protein BIM1; EB1-like 42.9 47 0.0016 27.4 5.7 29 273-301 17-45 (106)
216 2p22_C Protein SRN2; endosome, 42.4 44 0.0015 29.6 5.9 14 228-241 34-47 (192)
217 3rrk_A V-type ATPase 116 kDa s 42.3 64 0.0022 29.4 7.2 12 23-34 32-43 (357)
218 3frt_A Charged multivesicular 42.3 53 0.0018 29.6 6.5 45 229-273 18-69 (218)
219 2lw1_A ABC transporter ATP-bin 42.3 89 0.003 23.9 7.0 23 292-314 60-82 (89)
220 3a7p_A Autophagy protein 16; c 42.1 1.7E+02 0.0059 25.4 9.9 26 286-311 101-126 (152)
221 3bas_A Myosin heavy chain, str 41.9 59 0.002 25.2 5.9 71 245-315 12-83 (89)
222 3htk_A Structural maintenance 41.5 88 0.003 21.9 7.0 33 282-314 20-52 (60)
223 3ghg_A Fibrinogen alpha chain; 41.3 72 0.0025 32.9 7.9 39 278-316 114-152 (562)
224 1x4t_A Hypothetical protein LO 41.1 1.4E+02 0.0048 24.1 8.2 30 288-317 52-81 (92)
225 3o0z_A RHO-associated protein 40.6 1.2E+02 0.004 26.8 8.3 40 275-314 63-102 (168)
226 1wt6_A Myotonin-protein kinase 40.4 99 0.0034 24.5 7.0 29 288-316 45-73 (81)
227 2l5g_A GPS2 protein, G protein 40.2 26 0.00087 24.4 3.2 26 273-298 4-32 (38)
228 2wg5_A General control protein 40.2 32 0.0011 27.6 4.3 22 294-315 13-34 (109)
229 1uix_A RHO-associated kinase; 40.1 1.2E+02 0.004 23.5 7.2 39 276-314 6-47 (71)
230 2zdi_C Prefoldin subunit alpha 40.1 75 0.0026 26.1 6.7 44 274-317 98-141 (151)
231 2kho_A Heat shock protein 70; 39.9 1.1E+02 0.0039 30.3 9.1 16 303-318 580-595 (605)
232 1q08_A Zn(II)-responsive regul 39.9 83 0.0028 23.4 6.4 16 242-257 15-30 (99)
233 2fxo_A Myosin heavy chain, car 39.6 99 0.0034 25.1 7.3 39 276-314 78-123 (129)
234 2w83_C C-JUN-amino-terminal ki 39.6 58 0.002 25.6 5.5 31 284-314 40-70 (77)
235 3j20_T 30S ribosomal protein S 39.3 24 0.00081 30.2 3.5 19 223-241 10-28 (132)
236 3oa7_A Head morphogenesis prot 38.8 93 0.0032 28.4 7.5 59 256-317 15-73 (206)
237 3s9g_A Protein hexim1; cyclin 38.7 1.2E+02 0.004 25.1 7.4 30 274-303 65-94 (104)
238 3l4q_C Phosphatidylinositol 3- 38.4 84 0.0029 27.6 7.0 65 248-312 90-155 (170)
239 1am9_A Srebp-1A, protein (ster 38.0 76 0.0026 24.0 6.0 40 271-314 37-76 (82)
240 2zvf_A Alanyl-tRNA synthetase; 37.1 63 0.0022 26.5 5.8 14 248-261 12-25 (171)
241 2xv5_A Lamin-A/C; structural p 37.1 1.4E+02 0.0047 22.8 8.1 33 281-313 5-37 (74)
242 3mud_A DNA repair protein XRCC 37.0 59 0.002 28.9 5.9 36 273-308 134-169 (175)
243 2ocy_A RAB guanine nucleotide 37.0 1.5E+02 0.0051 25.7 8.3 40 282-321 59-98 (154)
244 3he5_A Synzip1; heterodimeric 36.9 1.1E+02 0.0039 21.8 6.5 36 277-312 6-48 (49)
245 2wg5_A General control protein 36.8 38 0.0013 27.1 4.2 24 285-308 11-34 (109)
246 3vp9_A General transcriptional 36.3 1.2E+02 0.0043 24.3 7.1 9 248-256 48-56 (92)
247 3k29_A Putative uncharacterize 36.2 1E+02 0.0035 27.3 7.2 39 286-324 32-70 (169)
248 1joc_A EEA1, early endosomal a 36.0 1E+02 0.0036 25.0 6.9 34 274-307 18-51 (125)
249 1t6f_A Geminin; coiled-coil, c 36.0 70 0.0024 22.1 4.8 28 273-300 6-33 (37)
250 1yzm_A FYVE-finger-containing 35.9 28 0.00096 25.4 3.0 28 269-296 23-50 (51)
251 3r4h_A Coiled coil helix CC-TE 35.7 66 0.0023 21.5 4.5 26 290-315 4-29 (34)
252 2oqq_A Transcription factor HY 35.5 72 0.0025 22.6 4.9 26 277-302 13-38 (42)
253 2wuj_A Septum site-determining 35.3 33 0.0011 24.7 3.4 22 288-309 34-55 (57)
254 4b4t_K 26S protease regulatory 35.3 56 0.0019 31.7 6.0 32 277-308 59-90 (428)
255 2xgj_A ATP-dependent RNA helic 35.2 28 0.00097 37.1 4.1 77 246-322 755-834 (1010)
256 1u00_A HSC66, chaperone protei 35.0 2.3E+02 0.0078 24.7 10.0 9 224-232 116-124 (227)
257 4fla_A Regulation of nuclear P 34.8 2E+02 0.007 24.4 8.7 7 235-241 85-91 (152)
258 2akf_A Coronin-1A; coiled coil 34.8 87 0.003 20.9 4.9 25 278-302 3-27 (32)
259 3r4h_A Coiled coil helix CC-TE 34.8 56 0.0019 21.9 4.0 28 282-309 3-30 (34)
260 3a2a_A Voltage-gated hydrogen 34.6 1.1E+02 0.0038 22.9 6.0 35 274-308 11-45 (58)
261 1uo4_A General control protein 34.4 69 0.0024 21.8 4.5 26 284-309 4-29 (34)
262 3viq_B Mating-type switching p 34.4 32 0.0011 27.4 3.3 17 278-294 12-28 (85)
263 2oxj_A Hybrid alpha/beta pepti 34.2 89 0.003 21.3 5.0 26 284-309 4-29 (34)
264 4b9q_A Chaperone protein DNAK; 34.1 1.1E+02 0.0037 30.4 7.9 35 281-317 560-594 (605)
265 3mtu_E Head morphogenesis prot 33.9 1.7E+02 0.0058 23.0 7.5 51 256-306 15-69 (77)
266 1ykh_B RNA polymerase II holoe 33.8 81 0.0028 26.1 5.9 31 286-316 97-127 (132)
267 2e7s_A RAB guanine nucleotide 33.6 29 0.00099 29.7 3.2 42 280-321 45-86 (135)
268 3swy_A Cyclic nucleotide-gated 33.5 1.3E+02 0.0044 21.4 6.6 38 275-312 6-43 (46)
269 1q06_A Transcriptional regulat 33.5 1.9E+02 0.0064 23.3 8.5 67 244-311 39-109 (135)
270 1a93_B MAX protein, coiled coi 33.4 54 0.0018 22.3 3.8 22 284-305 10-31 (34)
271 1dip_A Delta-sleep-inducing pe 33.3 40 0.0014 26.6 3.6 31 281-311 15-45 (78)
272 3iqt_A Signal transduction his 33.2 51 0.0018 26.6 4.5 48 260-307 67-121 (123)
273 3c3g_A Alpha/beta peptide with 33.2 95 0.0033 21.0 5.0 26 284-309 3-28 (33)
274 2ke4_A CDC42-interacting prote 32.9 88 0.003 25.0 5.8 16 276-291 24-39 (98)
275 4b4t_M 26S protease regulatory 32.8 41 0.0014 32.9 4.5 32 284-315 42-73 (434)
276 1wt6_A Myotonin-protein kinase 32.8 1.8E+02 0.0063 23.0 7.5 24 278-301 49-72 (81)
277 3viq_B Mating-type switching p 32.7 1.1E+02 0.0037 24.4 6.1 25 277-301 4-28 (85)
278 1uii_A Geminin; human, DNA rep 32.7 66 0.0023 25.6 4.9 51 242-302 23-74 (83)
279 1yke_B RNA polymerase II holoe 32.6 83 0.0028 26.8 5.9 32 286-317 97-128 (151)
280 3swf_A CGMP-gated cation chann 32.1 86 0.0029 24.4 5.4 40 278-317 4-47 (74)
281 3kin_B Kinesin heavy chain; mo 31.9 64 0.0022 26.1 4.9 23 285-307 93-115 (117)
282 4emc_A Monopolin complex subun 31.9 1.1E+02 0.0037 27.6 6.7 45 273-317 40-84 (190)
283 2ve7_C Kinetochore protein NUF 31.7 29 0.001 31.6 3.1 44 273-316 154-197 (250)
284 4b9q_A Chaperone protein DNAK; 31.5 1.4E+02 0.0049 29.5 8.3 11 243-253 506-516 (605)
285 2ve7_A Kinetochore protein HEC 31.4 41 0.0014 31.4 4.1 43 274-316 192-234 (315)
286 2qyw_A Vesicle transport throu 31.4 1.4E+02 0.0049 23.4 6.8 70 247-317 23-100 (102)
287 4b4t_J 26S protease regulatory 31.1 62 0.0021 31.5 5.5 44 274-317 25-68 (405)
288 1zme_C Proline utilization tra 31.0 41 0.0014 23.6 3.2 23 275-297 45-67 (70)
289 1jcd_A Major outer membrane li 30.7 1.5E+02 0.0052 21.4 6.6 35 277-311 14-48 (52)
290 3c3f_A Alpha/beta peptide with 30.7 1.1E+02 0.0038 20.8 5.0 26 284-309 4-29 (34)
291 3m0a_A TNF receptor-associated 30.5 1.5E+02 0.0051 21.2 6.6 13 303-315 48-60 (66)
292 2wq1_A General control protein 30.5 96 0.0033 21.0 4.6 26 284-309 3-28 (33)
293 2kkm_A Translation machinery-a 30.5 62 0.0021 27.3 4.7 36 222-262 43-78 (144)
294 2eqb_B RAB guanine nucleotide 30.3 1.6E+02 0.0054 23.9 6.9 42 276-317 42-91 (97)
295 2zvf_A Alanyl-tRNA synthetase; 30.2 70 0.0024 26.2 5.0 21 283-303 34-54 (171)
296 1gk6_A Vimentin; intermediate 30.2 1.5E+02 0.0053 21.3 7.0 24 275-298 8-31 (59)
297 1z0k_B FYVE-finger-containing 30.1 27 0.00093 26.9 2.2 27 270-296 42-68 (69)
298 2w83_C C-JUN-amino-terminal ki 29.8 2E+02 0.007 22.6 7.4 35 280-314 29-63 (77)
299 2bni_A General control protein 29.8 92 0.0031 21.2 4.5 26 284-309 4-29 (34)
300 3vem_A Helicase protein MOM1; 29.5 2.4E+02 0.0084 23.6 8.0 52 271-322 58-115 (115)
301 1j1d_C Troponin I, TNI; THIN f 29.5 98 0.0033 26.3 5.8 59 258-316 40-107 (133)
302 1hlo_A Protein (transcription 29.5 38 0.0013 25.4 2.9 16 268-283 41-56 (80)
303 3vkg_A Dynein heavy chain, cyt 29.4 95 0.0033 37.9 7.5 22 12-33 1555-1576(3245)
304 3he5_A Synzip1; heterodimeric 29.2 1.6E+02 0.0054 21.1 5.9 14 247-260 10-23 (49)
305 1gk6_A Vimentin; intermediate 29.2 77 0.0026 22.9 4.5 27 279-305 5-31 (59)
306 2vz4_A Tipal, HTH-type transcr 29.2 76 0.0026 24.5 4.8 63 224-303 40-103 (108)
307 3bas_A Myosin heavy chain, str 29.1 2E+02 0.0067 22.2 10.4 16 291-306 66-81 (89)
308 2efl_A Formin-binding protein 29.1 2.2E+02 0.0075 24.6 8.2 40 275-314 124-163 (305)
309 3he5_B Synzip2; heterodimeric 29.0 1.6E+02 0.0055 21.2 6.0 27 278-304 21-47 (52)
310 1t3j_A Mitofusin 1; coiled coi 29.0 1.5E+02 0.005 24.0 6.5 17 277-293 50-66 (96)
311 4b4t_M 26S protease regulatory 28.9 41 0.0014 32.8 3.8 13 251-263 29-41 (434)
312 4b4t_L 26S protease subunit RP 28.9 57 0.002 31.8 4.8 37 273-316 64-100 (437)
313 3ni0_A Bone marrow stromal ant 28.8 1.5E+02 0.005 24.4 6.4 69 235-314 17-86 (99)
314 1f5n_A Interferon-induced guan 28.8 2.9E+02 0.0099 28.0 10.1 11 313-323 559-569 (592)
315 3vkg_A Dynein heavy chain, cyt 28.7 1.9E+02 0.0066 35.4 9.9 36 277-312 2038-2073(3245)
316 1m1j_B Fibrinogen beta chain; 28.4 3.9E+02 0.013 26.7 10.7 13 248-260 101-113 (464)
317 1ykh_B RNA polymerase II holoe 28.4 1.6E+02 0.0055 24.3 6.8 33 276-308 94-126 (132)
318 4ad8_A DNA repair protein RECN 28.3 4E+02 0.014 25.5 10.8 19 223-241 152-170 (517)
319 1wlq_A Geminin; coiled-coil; 2 28.3 1.9E+02 0.0066 22.9 6.9 33 281-313 38-70 (83)
320 3itf_A Periplasmic adaptor pro 28.1 1.3E+02 0.0046 25.3 6.4 18 244-261 46-63 (145)
321 1am9_A Srebp-1A, protein (ster 28.1 91 0.0031 23.6 4.9 26 273-298 49-74 (82)
322 3ghg_B Fibrinogen beta chain; 28.1 1.7E+02 0.0058 29.5 8.1 86 225-310 88-192 (461)
323 3qh9_A Liprin-beta-2; coiled-c 27.7 2.3E+02 0.0078 22.5 7.5 39 277-315 22-60 (81)
324 3kin_B Kinesin heavy chain; mo 27.6 11 0.00038 30.7 -0.3 18 282-299 97-114 (117)
325 3kqg_A Langerin, C-type lectin 27.5 1E+02 0.0034 24.9 5.4 23 273-295 15-37 (182)
326 2wvr_A Geminin; DNA replicatio 27.4 1.8E+02 0.0061 26.6 7.4 45 271-315 105-149 (209)
327 3q4f_C DNA repair protein XRCC 27.4 60 0.0021 29.2 4.3 23 273-295 160-182 (186)
328 3lbx_B Beta-I spectrin, spectr 27.2 2.6E+02 0.0087 22.9 9.9 67 248-317 84-172 (185)
329 2v71_A Nuclear distribution pr 27.2 3.3E+02 0.011 24.2 11.1 32 276-307 90-121 (189)
330 1dh3_A Transcription factor CR 26.9 1.7E+02 0.0059 20.8 8.1 25 285-309 26-50 (55)
331 1dkg_A Nucleotide exchange fac 26.8 1.2E+02 0.0041 26.7 6.1 13 298-310 63-75 (197)
332 1lwu_C Fibrinogen gamma chain; 26.7 1.1E+02 0.0038 29.1 6.3 31 281-311 26-56 (323)
333 1fmh_B General control protein 26.5 1.3E+02 0.0043 20.1 4.6 19 248-266 2-20 (33)
334 1hlo_A Protein (transcription 26.4 1.2E+02 0.0043 22.5 5.4 19 290-308 59-77 (80)
335 3fb2_A Spectrin alpha chain, b 26.4 1.1E+02 0.0039 25.4 5.7 29 289-317 153-181 (218)
336 1yke_B RNA polymerase II holoe 26.4 1.7E+02 0.0059 24.8 6.8 34 276-309 94-127 (151)
337 1d7m_A Cortexillin I; coiled-c 26.3 1.2E+02 0.004 24.8 5.4 31 282-312 26-56 (101)
338 3lpx_A GYRA, DNA gyrase, A sub 26.2 53 0.0018 33.4 4.1 52 274-325 446-497 (500)
339 2hy6_A General control protein 26.2 1.4E+02 0.0047 20.4 4.8 26 284-309 4-29 (34)
340 3r6n_A Desmoplakin; spectrin r 26.2 4.2E+02 0.014 25.9 10.4 66 252-317 170-264 (450)
341 2zqm_A Prefoldin beta subunit 26.1 1.8E+02 0.006 22.3 6.4 34 284-317 73-106 (117)
342 1u00_A HSC66, chaperone protei 26.1 1.5E+02 0.0053 25.8 6.7 11 231-241 115-125 (227)
343 2er8_A Regulatory protein Leu3 26.0 22 0.00075 25.3 1.0 21 274-294 49-69 (72)
344 1zhc_A Hypothetical protein HP 26.0 73 0.0025 24.1 4.0 25 289-313 45-69 (76)
345 1cun_A Protein (alpha spectrin 26.0 2.6E+02 0.009 22.6 10.3 65 250-317 82-168 (213)
346 1avy_A Fibritin, gpwac M; bact 25.9 1.5E+02 0.0053 23.1 5.8 44 280-323 7-50 (74)
347 4dk0_A Putative MACA; alpha-ha 25.7 2.8E+02 0.0096 24.7 8.5 29 287-315 121-149 (369)
348 3pxg_A Negative regulator of g 25.5 2E+02 0.0067 27.4 7.8 40 276-315 396-440 (468)
349 2zdi_C Prefoldin subunit alpha 25.4 78 0.0027 26.1 4.4 42 275-316 10-54 (151)
350 4fla_A Regulation of nuclear P 25.4 1.9E+02 0.0064 24.6 6.9 24 292-315 111-134 (152)
351 2wuj_A Septum site-determining 25.3 63 0.0022 23.2 3.4 12 240-251 16-27 (57)
352 1nkw_F 50S ribosomal protein L 25.2 26 0.00089 29.7 1.5 53 262-314 22-74 (146)
353 1fxk_A Prefoldin; archaeal pro 24.9 2E+02 0.0068 21.7 6.4 33 284-316 68-100 (107)
354 1sr2_A Putative sensor-like hi 24.6 1.3E+02 0.0046 23.9 5.5 33 247-281 58-91 (116)
355 3plt_A Sphingolipid long chain 24.3 3.4E+02 0.012 25.0 8.8 18 247-264 104-121 (234)
356 2v66_B Nuclear distribution pr 24.3 3E+02 0.01 22.6 10.1 39 278-316 32-70 (111)
357 2w6b_A RHO guanine nucleotide 24.0 2.3E+02 0.0077 21.1 6.7 39 278-316 7-48 (56)
358 4emc_A Monopolin complex subun 24.0 2.3E+02 0.0078 25.5 7.4 28 281-308 27-54 (190)
359 2j5u_A MREC protein; bacterial 24.0 48 0.0017 29.9 3.1 30 273-302 18-47 (255)
360 2z5i_A TM, general control pro 23.9 1.7E+02 0.006 20.8 5.4 17 280-296 11-27 (52)
361 3iz6_R 40S ribosomal protein S 23.8 1.7 5.8E-05 38.1 -6.2 35 223-257 28-71 (154)
362 2aze_B Transcription factor E2 23.7 1.5E+02 0.005 23.9 5.6 26 276-301 15-40 (106)
363 3ni0_A Bone marrow stromal ant 23.5 3E+02 0.01 22.5 8.0 19 275-293 68-86 (99)
364 1wcn_A Transcription elongatio 23.3 86 0.0029 23.2 3.9 34 223-257 28-61 (70)
365 2jo8_A Serine/threonine-protei 23.3 37 0.0013 24.9 1.7 33 227-259 5-37 (51)
366 3rmi_A Chorismate mutase prote 23.2 2E+02 0.0067 23.1 6.3 35 276-310 14-48 (114)
367 2vkl_A RV0948C/MT0975; helical 23.0 1.9E+02 0.0065 22.2 6.0 36 276-311 14-49 (90)
368 2bzb_A Conserved domain protei 22.9 2E+02 0.0068 21.2 5.8 47 278-324 5-58 (62)
369 3hhm_B NISH2 P85alpha; PI3KCA, 22.8 2E+02 0.0067 27.7 7.2 42 276-317 214-255 (373)
370 1m1j_A Fibrinogen alpha subuni 22.8 5.3E+02 0.018 26.2 10.4 90 225-314 58-151 (491)
371 1w1w_A Structural maintenance 22.3 28 0.00095 32.5 1.2 16 226-241 154-169 (430)
372 3q4f_C DNA repair protein XRCC 22.2 79 0.0027 28.4 4.0 27 279-305 159-185 (186)
373 3l4q_C Phosphatidylinositol 3- 22.1 2.7E+02 0.0093 24.4 7.4 42 276-317 105-146 (170)
374 1zxa_A CGMP-dependent protein 22.0 1.6E+02 0.0056 22.4 5.2 10 296-305 40-49 (67)
375 1s1c_X RHO-associated, coiled- 22.0 2.7E+02 0.0094 21.4 7.2 38 276-313 8-46 (71)
376 1ik9_A DNA repair protein XRCC 22.0 2.2E+02 0.0074 25.4 6.9 42 274-315 146-195 (213)
377 3vmx_A Voltage-gated hydrogen 21.9 2.3E+02 0.0079 20.5 6.8 33 276-308 6-38 (48)
378 2js5_A Uncharacterized protein 21.9 1.7E+02 0.0057 22.6 5.3 64 247-316 3-66 (71)
379 2d8d_A Aroag, phospho-2-dehydr 21.8 2.3E+02 0.0079 21.2 6.1 35 276-310 5-39 (90)
380 1m1j_C Fibrinogen gamma chain; 21.8 3.2E+02 0.011 26.8 8.5 40 278-317 88-127 (409)
381 3csx_A Putative uncharacterize 21.8 1.4E+02 0.005 23.5 5.0 66 245-316 13-78 (81)
382 2no2_A HIP-I, huntingtin-inter 21.7 3.1E+02 0.011 22.0 10.6 22 293-314 73-94 (107)
383 1a93_B MAX protein, coiled coi 21.7 95 0.0032 21.1 3.4 24 293-316 5-28 (34)
384 3u1c_A Tropomyosin alpha-1 cha 21.7 2.9E+02 0.01 21.6 10.7 34 279-312 35-68 (101)
385 2zhg_A Redox-sensitive transcr 21.6 2E+02 0.0067 23.8 6.2 21 244-265 49-69 (154)
386 2aze_A Transcription factor DP 21.6 1.9E+02 0.0066 25.2 6.3 37 244-286 2-38 (155)
387 3ghg_A Fibrinogen alpha chain; 21.6 2.5E+02 0.0087 29.0 8.0 29 286-314 115-143 (562)
388 1ybz_A Chorismate mutase; cons 21.6 2.4E+02 0.0082 21.8 6.3 35 276-310 19-53 (91)
389 2ocy_A RAB guanine nucleotide 21.5 2.4E+02 0.0081 24.5 6.8 41 275-315 45-85 (154)
390 3sjb_C Golgi to ER traffic pro 21.5 2.1E+02 0.0071 23.1 6.0 21 292-312 53-73 (93)
391 3mtu_E Head morphogenesis prot 21.5 1.5E+02 0.0051 23.3 5.0 34 273-306 43-76 (77)
392 3plt_A Sphingolipid long chain 21.3 2.1E+02 0.0072 26.3 6.8 27 290-316 133-159 (234)
393 4aj5_1 SKA3, spindle and kinet 21.2 3.4E+02 0.012 22.2 7.7 65 247-316 20-84 (101)
394 2lf0_A Uncharacterized protein 21.2 1.2E+02 0.0042 25.7 4.8 51 246-297 9-59 (123)
395 1qvr_A CLPB protein; coiled co 20.9 1.7E+02 0.0058 30.1 6.7 9 224-232 332-340 (854)
396 1x79_B RAB GTPase binding effe 20.8 1.8E+02 0.0061 24.1 5.6 33 281-313 6-38 (112)
397 3i00_A HIP-I, huntingtin-inter 20.8 3.5E+02 0.012 22.2 9.0 39 276-314 42-80 (120)
398 2z5i_A TM, general control pro 20.7 1.3E+02 0.0045 21.4 4.2 27 279-305 17-43 (52)
399 3us6_A Histidine-containing ph 20.6 2.6E+02 0.0088 23.2 6.7 62 249-314 71-133 (153)
400 3pjs_K KCSA, voltage-gated pot 20.5 1.2E+02 0.0041 25.1 4.7 17 287-303 144-160 (166)
401 2lw9_A Unconventionnal myosin- 20.2 1.2E+02 0.0041 22.2 3.9 23 271-293 3-25 (51)
No 1
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=100.00 E-value=1e-35 Score=239.70 Aligned_cols=89 Identities=47% Similarity=0.810 Sum_probs=87.9
Q ss_pred hHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
|+||+|||+|||++|+|||++||.+|||+||||||||||||||+||++++++||+++.+|+.+++.|+.|++++.+|+|.
T Consensus 1 deLv~msVreLN~~L~gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 1 DQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp CHHHHSCHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHcCCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy4245 307 YKKQYEIVM 315 (328)
Q Consensus 307 yK~K~e~L~ 315 (328)
||+||++|+
T Consensus 81 ~k~k~~~L~ 89 (90)
T 2wt7_B 81 YKVKSEKLA 89 (90)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999999986
No 2
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=100.00 E-value=1.6e-35 Score=244.74 Aligned_cols=100 Identities=40% Similarity=0.644 Sum_probs=91.3
Q ss_pred CCCCCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 219 SESDLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 219 ~l~i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
+..++||||+||+|||+|||++|+|||++|+.+|||+|||||||||||+||+||++++++||+++..|+.+++.|+.|++
T Consensus 3 ~~~~~~sd~~Lv~m~v~elN~~L~~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~ 82 (107)
T 3a5t_A 3 HMGTSLTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA 82 (107)
T ss_dssp CCCCCCCHHHHHHSCHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTS
T ss_pred CCCCCCCHHHHhcCCHHHHHHHHhCCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q psy4245 299 QIVEERNHYKKQYEIVMRNK 318 (328)
Q Consensus 299 rl~rErd~yK~K~e~L~~~~ 318 (328)
++.+|++.||.||++|+++.
T Consensus 83 ~l~~E~~~lk~k~e~L~~~a 102 (107)
T 3a5t_A 83 SMKLELDALRSKYEALQNFA 102 (107)
T ss_dssp HHHHTTTSSSSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999763
No 3
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=99.82 E-value=5.7e-21 Score=154.36 Aligned_cols=70 Identities=20% Similarity=0.250 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCCChhHhhcccHHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHH
Q psy4245 212 RTTTCPYSESDLISDDLLMCLSVRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEV 281 (328)
Q Consensus 212 r~~~~~~~l~i~fSDEeLVsmSVrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~ 281 (328)
|++..+-.+.+|||+|+|++|||+|||++| .|||.+|+..||++|||+|||+|||+||+||++.+..|+.
T Consensus 19 rDE~ra~al~lPfs~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 19 KDEQLASDNELPVSAFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHTTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHhCCCCCHHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 455555569999999999999999999999 8999999999999999999999999999999999988763
No 4
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-21 Score=156.20 Aligned_cols=65 Identities=26% Similarity=0.289 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCChhHhhcccHHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH
Q psy4245 212 RTTTCPYSESDLISDDLLMCLSVRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR 276 (328)
Q Consensus 212 r~~~~~~~l~i~fSDEeLVsmSVrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~ 276 (328)
|++..+-.+.+|||+|+|++|||+|||++| ++||.+|+..||++|||+|||+|||+||+||++.|
T Consensus 23 rDE~ra~~l~lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNKvAAqnCRKRKld~I 89 (91)
T 2kz5_A 23 RDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRGKNKVAAQNYRKRKLETI 89 (91)
T ss_dssp HHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC
T ss_pred hhHHHHHHhCCCCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 455555669999999999999999999999 89999999999999999999999999999998764
No 5
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=8.2e-22 Score=158.83 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCChhHhhcccHHHHHHhc--CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH
Q psy4245 211 SRTTTCPYSESDLISDDLLMCLSVRELNKKL--HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR 276 (328)
Q Consensus 211 ~r~~~~~~~l~i~fSDEeLVsmSVrELNrlL--~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~ 276 (328)
+|++.++-.+.+|||+|+|++|||+|||++| ++||.+|+..|+++|||+|||+|||+||+||++.+
T Consensus 22 srDE~ra~~~~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKNkvAAqnCRKRKld~I 89 (90)
T 2lz1_A 22 TRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKNKVAAQNCRKRKLENI 89 (90)
T ss_dssp CHHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCSCCCCCCCSCCCCSCC
T ss_pred chhHHHHHHcCCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhhHHHHHHcchhhcccc
Confidence 3777676779999999999999999999999 89999999999999999999999999999998753
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.14 E-value=2.4e-10 Score=85.45 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=56.2
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
|.+||+.+||.||+.||.||.+.+.+||.++..|..+-..|+.+++.|..|...++.-+.
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999988764
No 7
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.01 E-value=4.2e-10 Score=83.66 Aligned_cols=60 Identities=27% Similarity=0.352 Sum_probs=53.1
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
|-.||+.+||.||+.||.||.+.+.+||.++..|..+...|+.++..|..|...+|+.+.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999999887653
No 8
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=98.99 E-value=1.5e-09 Score=80.30 Aligned_cols=59 Identities=25% Similarity=0.265 Sum_probs=55.4
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|..+|+.+||.+|+.||.||.+.+..||.++..|..+...|+.+++.|..|...+|+.+
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999999999999999998765
No 9
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.77 E-value=2.5e-08 Score=74.80 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=51.8
Q ss_pred HHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 252 LKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 252 LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+|..|++.+||.||+-||.||.+....|+.++..|..+...|+.+++.+..|+..+|+-+.
T Consensus 1 ~k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 1 MKKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999997654
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.59 E-value=7e-08 Score=70.93 Aligned_cols=51 Identities=27% Similarity=0.315 Sum_probs=44.0
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
|..||.++||.+|+.||.||...+.+||.++..|+.+...|+.+++.+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999888888877777777776544
No 11
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.45 E-value=2.5e-07 Score=69.60 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=40.4
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
..|++.+||.+|+.||.||.+.+.+||.++..|..+...|..|++.|..+.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566799999999999999999999888888877777777776665543
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.01 E-value=2.3e-05 Score=62.69 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=56.9
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
.++||-||..||+-||.||.+...+++.++..|+.+-..|+.+++.|..|.+.++.-+-.+....+
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 567789999999999999999999999999999999999999999999999999998888776544
No 13
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=97.90 E-value=2.6e-05 Score=61.23 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=51.4
Q ss_pred HHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 253 KAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 253 KQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
+.+.||-||..||+-||.|+.+...+++..+..|..+-..|+.+++.|..|.+.++.-+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999998888888888887644
No 14
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.79 E-value=6.2e-05 Score=58.06 Aligned_cols=60 Identities=17% Similarity=0.254 Sum_probs=54.7
Q ss_pred HHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 255 KRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 255 rRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.||+..||.++...|.||-+.+.+||.++..|+...+.|..|+..|..++..+...++.|
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 588899999999999999999999999999999999999999988888888888887765
No 15
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=91.70 E-value=1.6 Score=34.43 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=54.4
Q ss_pred HHHhhhhchHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQR-QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~-~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..||++|-+.+-..|=-.-|.++ .+|..-...|..-+.+|.+|.+.+..+++.||.|.+.|...
T Consensus 11 KLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 11 KLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888998888888876666444 57888888899999999999999999999999999999764
No 16
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=91.36 E-value=0.64 Score=35.10 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=18.3
Q ss_pred HhhhhchHHHHHhHHHHHHHHHH
Q psy4245 256 RRTLKNRGYAQNCRSKRLHQRQE 278 (328)
Q Consensus 256 RRTLKNRGYAQnCRkKRLqq~~~ 278 (328)
+.+.|||.++..||.|=.++.+.
T Consensus 4 ~kryknr~asrk~rakfkn~lqh 26 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQH 26 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999986555443
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.27 E-value=1.8 Score=41.81 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
..+.++.+.||.++..|+++++..++.+.++++|.+..++++..|.....+
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334466777888888899999999999999999999999999998876443
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.17 E-value=0.68 Score=36.77 Aligned_cols=40 Identities=15% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.|..++..++...+.|..|++++..|+..++.++..|.+-
T Consensus 38 ~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 38 SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555556666668889999999999999999998764
No 19
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=90.76 E-value=1.7 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=48.9
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|.+|+-=++=|..+.+.|+.=+..|..+++.-+.|++++..+++..|.++..|..
T Consensus 25 rEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 25 REQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7888888888888888888888888899999999999999999999999999865
No 20
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=89.70 E-value=3.7 Score=32.56 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=49.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 234 VRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR-QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 234 VrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~-~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
...||..|..+ -+.|..|.+.=+.|-.+.-... .+....+ .-.|.++..|+++++.+..+++++.-|++.+..-++
T Consensus 11 mq~LNdRlAsy-IdKVR~LEqqN~~Le~~i~~l~--~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 11 LQELNDRFANL-IDKVRFLEQQNKILLAELEQLK--GQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh--hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677766432 1344444444444433321111 1111222 234888999999999999999999999999988888
Q ss_pred HHHh
Q psy4245 313 IVMR 316 (328)
Q Consensus 313 ~L~~ 316 (328)
.+..
T Consensus 88 ~~k~ 91 (93)
T 3s4r_A 88 RLRE 91 (93)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7764
No 21
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=88.82 E-value=0.94 Score=30.32 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+..|.+|+..|++|++.++-|+.++|+-|
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqgy 32 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQGY 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344566677777777777777777766643
No 22
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=87.50 E-value=9.7 Score=31.49 Aligned_cols=91 Identities=12% Similarity=0.197 Sum_probs=40.5
Q ss_pred CChhHhhcccH-HHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSV-RELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 224 fSDEeLVsmSV-rELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
|++++|..+.. +.| + =.|+|-++|..+=+...... ..|..+ +.-|+.....|+++++.|+.-++.+..
T Consensus 41 Y~~~dl~~l~~I~~l-r-~~G~sL~eIk~~l~~~~~~~-----~~~~~~----~~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 41 FGAEDLRWILFTRQM-R-RAGLSIEALIDYLALFREGE-----HTLEAR----AELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp BCHHHHHHHHHHHHH-H-HTTCCHHHHHHHHHHHHHCG-----GGHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHH-H-HcCCCHHHHHHHHHHHhccC-----CCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56676665522 111 1 15999999988766554332 123221 223344444444444444444444444
Q ss_pred HHHHHHHH-------HHHHHhccccCccccc
Q psy4245 303 ERNHYKKQ-------YEIVMRNKDRSEAEHL 326 (328)
Q Consensus 303 Erd~yK~K-------~e~L~~~~f~~~~~h~ 326 (328)
.++.|+.. +..+. ..|..+|-||
T Consensus 110 ~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (142)
T 3gp4_A 110 KIDNYDTHLIPAQEELKDFN-VERSNEGHHH 139 (142)
T ss_dssp HHHHHHHTHHHHHHHHHHHH-HTTC------
T ss_pred HHHHHHHHHHHHHHHhcccC-ccccCCCccc
Confidence 44444443 33322 2455566554
No 23
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.10 E-value=1.4 Score=33.46 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 267 NCRSKRLHQRQELEVTNK---HLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 267 nCRkKRLqq~~~LE~E~~---~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.|...|++...-|...+. .|+.+.+.|..|++++.++...+++++..|.
T Consensus 30 ~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 30 SLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp GGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566766666666554 3667777777888888888888888777664
No 24
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=86.51 E-value=3.5 Score=30.54 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.|.+.|..|+..|++|++.=...+.++..|--.+|.-+..|...
T Consensus 9 ~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~~ 53 (54)
T 1deb_A 9 LKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQGS 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHccc
Confidence 467788888888888888888888888888888888877777653
No 25
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=86.39 E-value=3.3 Score=35.06 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
++.+|+.|+..|..+++....|+++++++...++.++..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 355666666666666666666666666666666665544
No 26
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=85.55 E-value=4.2 Score=34.43 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=45.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-.-|..|-.-=+.=...|+.++.+-+.+++.|+-|+..|.+++...-.++|.|++.
T Consensus 45 eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44577888877888889999988877888888888888888888888888887765
No 27
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=84.96 E-value=1.5 Score=34.20 Aligned_cols=37 Identities=14% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
+|.+++...+..++.|+.++.....++..|+.|+|.|
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555444444
No 28
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=83.76 E-value=5.5 Score=32.99 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 243 GYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR----QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 243 GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~----~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-++.+++.+|+.++.- |+-|+.-.-=+.-++.. ..++.-...|+.+++.|..+++++.+-++.+..+++.....
T Consensus 40 ~Y~~~dl~~l~~I~~l-r~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 40 KFGAEDLRWILFTRQM-RRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp CBCHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999765 66666433222212211 12344456688889999999999988888888888877654
No 29
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=83.46 E-value=3.8 Score=31.58 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
..|+.+..+|..|++++.+|...++++++.|
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455555556666666666666666666543
No 30
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=83.44 E-value=3.3 Score=34.42 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
.|+|-++|..+=+..+... ..|. +...-|+.....|+++++.|+..++.+...++.|+..++.
T Consensus 72 ~G~sL~eIk~~l~~~~~~~-----~~~~----~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 72 TGMPIQKIKQFIDWSMEGD-----STIL----HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp TTCCHHHHHHHHHHHHHCG-----GGHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCCHHHHHHHHHhhhcCC-----CCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4676666666554333221 1221 1223445555556666666666555555555555554433
No 31
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=83.34 E-value=11 Score=33.07 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHHhhhhchHHHH
Q psy4245 243 GYPRDQIAKLKAKRRTLKNRGYAQ 266 (328)
Q Consensus 243 GLSkeEv~~LKQrRRTLKNRGYAQ 266 (328)
.||+||...|+++|...+....+.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~L 90 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSAL 90 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999998877665553
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.63 E-value=2.6 Score=37.77 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+||.++..+..+...|+..++++..|++.+|.||+.....
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777788888888888888888888888888777543
No 33
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=82.38 E-value=2.2 Score=30.97 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
++..|+.|++.|+.+++.+..+.+.++++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666666666666666666554
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.77 E-value=5.7 Score=30.74 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+.+||..+..++.-++.|...+.+-.++++.++.++..|...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777777655
No 35
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=81.69 E-value=2.7 Score=28.06 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|+..|++|++.+++|+.++|-.+..|.+
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6778888888888888888888888765
No 36
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=81.47 E-value=1.5 Score=40.92 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..+|+.++..|..+.++|+.++.++++|+..+|..+++|.+-
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456777777788888888888888888888888888888754
No 37
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=81.12 E-value=4.5 Score=31.59 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 271 KRLHQRQELEVT---NKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 271 KRLqq~~~LE~E---~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|++...-|... +..|+.+...|..+++.+.++...++.+++.|.+
T Consensus 39 ~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 39 EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344444444443 3346677777777777777777778888877754
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.90 E-value=2.3 Score=35.93 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.++.|...|..++..++.+++.+.+|+..++.++..|...
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444445555555555554443
No 39
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=80.37 E-value=5.4 Score=34.53 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=46.5
Q ss_pred hchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccc
Q psy4245 260 KNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSE------------IKQIVEERNHYKKQYEIVMRNKDR 320 (328)
Q Consensus 260 KNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E------------~~rl~rErd~yK~K~e~L~~~~f~ 320 (328)
-||.|--+|++|==.....|=..+..|+.-++.|++. ++.+.++++..+..++.|..+.-.
T Consensus 7 ~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 7 SNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999886567777777788888777777754 556778888888888877766543
No 40
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.11 E-value=14 Score=29.28 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=34.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 237 LNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 237 LNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+..-|..|..++...+......-|+|-....=-..--.+...|+.+=...+++...++.++..+..|++.++.+|.
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~ 84 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMR 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444454444444444444444433333333333344444444444444444444445555555544444
No 41
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=79.90 E-value=21 Score=35.63 Aligned_cols=95 Identities=9% Similarity=0.117 Sum_probs=63.2
Q ss_pred CCChhHhhcccHHHHHHhc--CCCC-----HHHHHHHHHHHhhhhchHHHHHhHHHHHHH-HHHHH-----------HHH
Q psy4245 223 LISDDLLMCLSVRELNKKL--HGYP-----RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ-RQELE-----------VTN 283 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL--~GLS-----keEv~~LKQrRRTLKNRGYAQnCRkKRLqq-~~~LE-----------~E~ 283 (328)
++=|=.++.-..+.+-+.| +|+. -+++..|-++||.++.+.-+...+.+++.. +-.+. .+.
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~ 118 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQY 118 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccH
Confidence 4434444444566664444 6764 589999999999987776666555554432 22221 244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..|.+++..|+.+++.+..+...++.+++.+...
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~ 152 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPKEAQLEEQFYLRALR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888888888888888888888777654
No 42
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.89 E-value=14 Score=31.07 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..++..|-.+...++.+++.+++|++++.++.+.+..++..|..
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666666666666666666666555555543
No 43
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=79.75 E-value=7.1 Score=30.27 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+....+|.++..|+.++..|+..++..+.+++..|..+..+..
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788888888888888888888888888877777666554
No 44
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=79.71 E-value=5.4 Score=32.99 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
......++..|..++..|+..++.+.+|||.|=.|+-.
T Consensus 13 L~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 13 LTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566678888888999999999999988777654
No 45
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=79.43 E-value=12 Score=36.26 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=52.9
Q ss_pred CCCC--HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 242 HGYP--RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQEL--EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 242 ~GLS--keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L--E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+|+. -+++..+-++||.++.+.-+..-+.+++...-.- ..+...|.+++..|+.+++.+..+...++.+++.+...
T Consensus 21 r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 21 KGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4543 6888889899999888776665555555433211 12345677888888888888888888888888776544
No 46
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=78.02 E-value=13 Score=35.12 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=41.5
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
|--|..|----+.-...||.++.+-++.++.|..|+..+..++......++.|+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 417 EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444556655556666788888888778888888888888888888888888775
No 47
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=78.01 E-value=4.2 Score=29.48 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
...|+.++..|..+++.|+.|+..|..
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666665543
No 48
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=77.58 E-value=13 Score=36.59 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR-QELE---VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~-~~LE---~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-+++..|-++||.++.+.-+..-+.+++... -.+. .+...|.+++..|+.+++.+..+...++.+++.+...
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888887766655555554322 2221 2345678888888888888888888888888877654
No 49
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=77.43 E-value=8.7 Score=30.19 Aligned_cols=43 Identities=23% Similarity=0.378 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+....||.++..|+.++..|+..++..+.+++..|..+..+..
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888888777777766665544
No 50
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=77.34 E-value=7.9 Score=38.74 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
++++..|..+.+.++.+++.|+.+...+.+++..+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555554443
No 51
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=77.12 E-value=5.1 Score=29.66 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+|.+|++.|+.|+..+++|+..--..+.+|...
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 4788999999999999999999999999888765
No 52
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.02 E-value=28 Score=28.31 Aligned_cols=30 Identities=7% Similarity=0.327 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.++..+..|..++.+++.++....+.|+.|
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L 108 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARLLREYQEL 108 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=77.00 E-value=8.1 Score=30.06 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-+.+..|+..+..+..+++.|..++..+..+...+|.++..+.+.
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456678888888899999999999999999999999999888754
No 54
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.89 E-value=4.1 Score=29.52 Aligned_cols=30 Identities=7% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.++++|+.|++.++.+.+.++.+++.|...
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777776666666666554
No 55
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=76.75 E-value=9.3 Score=30.37 Aligned_cols=46 Identities=20% Similarity=0.462 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 272 RLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 272 RLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-++++..||.+...|..+|..+..|..++..+-..|=..|..+...
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888888777777777766543
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.55 E-value=18 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhchHH
Q psy4245 248 QIAKLKAKRRTLKNRGY 264 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGY 264 (328)
++..++..-+++|++..
T Consensus 457 e~~~~~~~i~~l~~~~~ 473 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQI 473 (597)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555543
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.38 E-value=3.7 Score=32.60 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
....||.|+..|+.+++.|+.|+..|..-+-
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888887765443
No 58
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=75.94 E-value=5.9 Score=29.24 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
++...|+.++..|..+++.|+.|+..|..-
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777776543
No 59
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=75.90 E-value=3.5 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.|+.+++.|..+++++.+-++.+..++
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 79 ALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444443
No 60
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=75.21 E-value=20 Score=29.63 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+..|+.++++|+.|+.+|.+|...+.+
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445666777777777777777666544
No 61
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=74.79 E-value=5.5 Score=32.58 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
++..|+.+++.|..|+.+|.++++.++.+++..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556688888888888888888888888888874
No 62
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=74.72 E-value=4.1 Score=30.89 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
++-|..|+.++..|+.+++.|+.++..+...+..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666677777776666666544
No 63
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=74.61 E-value=13 Score=34.00 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=45.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
|-|.+.|=++=......|++...+.+.|++.+...++++++....++..|+++.
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456666666555677788899999999999999999999999999999988764
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.26 E-value=13 Score=29.51 Aligned_cols=8 Identities=0% Similarity=0.198 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy4245 307 YKKQYEIV 314 (328)
Q Consensus 307 yK~K~e~L 314 (328)
+.+..+.|
T Consensus 53 L~~en~qL 60 (81)
T 2jee_A 53 LERENNHL 60 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 65
>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*
Probab=74.18 E-value=1.6 Score=37.76 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCChhHhhcccHHHHHHhc---------CCCCHHHHHHHHHHHhh
Q psy4245 223 LISDDLLMCLSVRELNKKL---------HGYPRDQIAKLKAKRRT 258 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL---------~GLSkeEv~~LKQrRRT 258 (328)
+++.|||.+||.+||-+++ +||+.++...||..|..
T Consensus 19 G~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrka 63 (142)
T 3u5c_P 19 GVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAA 63 (142)
T ss_dssp SCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHH
T ss_pred cccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHH
Confidence 4689999999999998876 58888888888888764
No 66
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=74.03 E-value=9.2 Score=36.51 Aligned_cols=45 Identities=13% Similarity=0.088 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++++..||..+.....++..|+..++.+...++.+++++..|...
T Consensus 11 ~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 11 LEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777777777777777777766653
No 67
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.66 E-value=24 Score=31.51 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhhhchHH
Q psy4245 247 DQIAKLKAKRRTLKNRGY 264 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGY 264 (328)
.++..|.+....++.+..
T Consensus 32 ~el~~le~~~~~l~~~~~ 49 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAIL 49 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 68
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=73.52 E-value=21 Score=26.41 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=34.4
Q ss_pred hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 259 LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 259 LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
-|||.-|-..-+.|++. |...+..=..++...+.|+.++.+.++.+...++.|.
T Consensus 23 ~knr~EaE~~y~~k~ee---l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 23 AKNLQEAEEWYKSKFAD---LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47888887777766653 4455555555566666666666666666666666554
No 69
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=73.33 E-value=6.4 Score=30.30 Aligned_cols=33 Identities=12% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
.+-|..|+.+...|..+++.|+.|+..|.+++.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566778888888888888888888888877765
No 70
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=73.23 E-value=7.2 Score=30.40 Aligned_cols=36 Identities=6% Similarity=0.075 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.+-|..|+.++..+..+++.|+.++..|..++..++
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577889999999999999999999999999888764
No 71
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.23 E-value=35 Score=30.46 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKR 272 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKR 272 (328)
++..++...+++++-.....=|.+|
T Consensus 54 ~l~d~~~~~~~~e~~i~~~~~ri~~ 78 (256)
T 3na7_A 54 EKLALKLQVSKNEQTLQDTNAKIAS 78 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 72
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=72.97 E-value=4.9 Score=31.27 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
...|+.|+..|+.+++.|..|+..|.
T Consensus 45 ~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 45 VLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666554
No 73
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.91 E-value=7.6 Score=30.48 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+|-..+..|+.|+..|+=.++++..+++.++++-..+|..
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555543
No 74
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.44 E-value=11 Score=41.01 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++.++..|+.+++.|+.+++++.+|...++++++.+.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555555555555555555443
No 75
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.11 E-value=30 Score=28.29 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhhchHH
Q psy4245 248 QIAKLKAKRRTLKNRGY 264 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGY 264 (328)
|+.-+|..+..|-|...
T Consensus 53 el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 53 ELQSQLSMKASLENSLE 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 34444444444444443
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.00 E-value=16 Score=28.69 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..=..+++.|..|+..|+-+++.+..+++++.+.-..+=..++...+.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~Rl~~ 70 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLSSG 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344678899999999999999999999999977655544444444333
No 77
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.93 E-value=10 Score=27.74 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
|+.+++.|..++..|..+++.++..+..|.
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444
No 78
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=71.38 E-value=28 Score=26.72 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
|+.-+|..+..|.|...-.--|.. .+...+...+..|+.++.+++.+.++..
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~--~~~~~~q~~i~~lE~eL~~~r~e~~~q~ 53 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFA--VEAANYQDTIGRLQDEIQNMKEEMARHL 53 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665554333332 2223333333444444444444444333
No 79
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.14 E-value=15 Score=30.35 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..+++|....+++++.....++++++++..+.++..+..|..
T Consensus 38 ~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~ 79 (103)
T 4h22_A 38 MLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666777777777766666653
No 80
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=70.66 E-value=5.6 Score=39.07 Aligned_cols=49 Identities=16% Similarity=0.275 Sum_probs=27.3
Q ss_pred HHhhhhchHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 255 KRRTLKNRGY-AQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 255 rRRTLKNRGY-AQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
.|..+++|++ .. ..-++++.+|..+.+.++.+++.|+.+...+.+++..
T Consensus 14 ~~~~~~~R~~~~~---~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 14 VKNDLIKRGELEK---VKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHTCGGG---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665 20 0114566666666666666666666666666655554
No 81
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=70.46 E-value=4.6 Score=30.91 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 280 EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.-++.|+.++..|..+...+..|...++..++.|..
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~ 64 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEE 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555543
No 82
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=70.45 E-value=19 Score=28.73 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.|+..|..+++.|..|++.++.|.+.++.-.+.++
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677888888888888888888887777666543
No 83
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=70.27 E-value=7.5 Score=37.67 Aligned_cols=76 Identities=18% Similarity=0.305 Sum_probs=47.7
Q ss_pred CCCC----HHHHHHHHHHHhhhhchHHHHHhHHHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYP----RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR-QELE---VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 242 ~GLS----keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~-~~LE---~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+|+. -+++..|-++||.++.+.-+..-+.+++... -.+. .+...|.+++..|+.+++.+..+...+..+++.
T Consensus 21 r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 21 RDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665 3777888888888877765555554444322 1111 123446677777777777777777777777776
Q ss_pred HHhc
Q psy4245 314 VMRN 317 (328)
Q Consensus 314 L~~~ 317 (328)
+...
T Consensus 101 ~~~~ 104 (425)
T 2dq3_A 101 TLLW 104 (425)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6544
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.72 E-value=10 Score=38.02 Aligned_cols=76 Identities=17% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCCC---HHHHHHHHHHHhhhhchHHHHHhHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYP---RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ-RQELE---VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 242 ~GLS---keEv~~LKQrRRTLKNRGYAQnCRkKRLqq-~~~LE---~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+|+. -+++..|-++||.++-+.=+...+...+.. +-.+. .+...|.+++..|+.++..+..+...+..+++.+
T Consensus 25 R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 25 RGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 478888888888887666555555544432 22222 2345677888888888888888888888888776
Q ss_pred Hhc
Q psy4245 315 MRN 317 (328)
Q Consensus 315 ~~~ 317 (328)
...
T Consensus 105 l~~ 107 (485)
T 3qne_A 105 INQ 107 (485)
T ss_dssp HTT
T ss_pred HHh
Confidence 554
No 85
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=69.55 E-value=23 Score=27.53 Aligned_cols=40 Identities=8% Similarity=0.081 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
..+...+.+...+..++..|+.++..+.+++..+..+|..
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~~ 103 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR 103 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777777777763
No 86
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=69.42 E-value=6.5 Score=32.69 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccCccccc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVE----ERNHYKKQYEIVMRNKDRSEAEHL 326 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~r----Erd~yK~K~e~L~~~~f~~~~~h~ 326 (328)
+..|+.+...|+.-++.|..-++.+.. +.+.+.+-+..+.-.+-..||-||
T Consensus 89 ~~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li~~~~~~~~~~~~~~~ 143 (146)
T 3hh0_A 89 REVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFLQTFIWEKENKEGHHH 143 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHcccccccccc
Confidence 334444444444444444433333322 123344444445555555666654
No 87
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.30 E-value=16 Score=29.78 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 294 KSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~e~L 314 (328)
+.+++.|+.|+..+|.++..|
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 88
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.99 E-value=27 Score=27.53 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
+.+|-..+..+..+..+|..|+..+..+...+|.|
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333334444444444444444444444433
No 89
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=68.35 E-value=24 Score=28.03 Aligned_cols=54 Identities=6% Similarity=0.085 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
++..|+..+..|-|+..-.-++... +...+...+..|+.++.+++.+.++..+|
T Consensus 13 ~~~~Lq~~~~~LE~~l~e~E~~~~~--e~~~~q~~i~~lE~eL~~~r~e~~~ql~E 66 (95)
T 3mov_A 13 LYFQGQKESRACLERIQELEDLLAK--EKDNSRRMLTDKEREMAEIRDQMQQQLND 66 (95)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333321 23333334444444444444444444333
No 90
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=68.20 E-value=13 Score=28.32 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=22.6
Q ss_pred hchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 260 KNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 260 KNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
||-.+|...+..-| +...+|-+|...|+.++.+|+.|+..++
T Consensus 19 K~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 19 KKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 45556655544433 2334555566666666666666655543
No 91
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=67.75 E-value=7.9 Score=26.30 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.|+++-.+|..|++.+.+....+|+|++.|
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367777888888888888888888888876
No 92
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=67.71 E-value=24 Score=28.60 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=17.6
Q ss_pred CChhHhhcccH-HHHHHhcCCCCHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSV-RELNKKLHGYPRDQIAKLKAKR 256 (328)
Q Consensus 224 fSDEeLVsmSV-rELNrlL~GLSkeEv~~LKQrR 256 (328)
|++++|..+.. +.| +. .|+|-++|..+=+..
T Consensus 39 Y~~~dl~~l~~I~~l-r~-~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 39 YTQQHLNELTLLRQA-RQ-VGFNLEESGELVNLF 70 (135)
T ss_dssp CCHHHHHHHHHHHHH-HH-TTCCHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHH-HH-CCCCHHHHHHHHHhh
Confidence 56676665532 111 11 588888887765544
No 93
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=67.69 E-value=17 Score=28.09 Aligned_cols=23 Identities=9% Similarity=0.018 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhhhchHHHHHhH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCR 269 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCR 269 (328)
.|+..||..+..|.|+.+-.-.|
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~ 25 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDS 25 (86)
T ss_dssp ---------CTTHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666665544443
No 94
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=67.57 E-value=20 Score=25.95 Aligned_cols=38 Identities=13% Similarity=0.211 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.+|..++..|..+-++|..-+.+...++..+|..+++|
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555666666666666666666666665
No 95
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=67.20 E-value=6.6 Score=36.66 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
..++..|+..+..|..++..+++|+.+++.|++.+++
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566777777777888888888888888888887763
No 96
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=66.93 E-value=4.2 Score=39.39 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=35.2
Q ss_pred HHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 254 AKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 254 QrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
..|..+++|++.. ..-++++..|..+.+.++.+++.|+.+...+.+++..+
T Consensus 13 ~~~~~~~~r~~~~---~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 13 YVKERLATRDKEL---VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHTTTCGGG---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777787631 11267778888888888888888888877777776543
No 97
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=66.92 E-value=8.6 Score=26.09 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+...|..|+++++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355555555555555555555543
No 98
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.86 E-value=26 Score=28.59 Aligned_cols=67 Identities=19% Similarity=0.282 Sum_probs=32.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 235 RELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 235 rELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
.|+|+.+..|. -|+.-+|..+..|-|...-.-.|.- .+...+...+..|+.++.+++.+.++..+|-
T Consensus 39 ~elrr~iq~L~-~el~~l~~~~~~LE~~l~e~e~~~~--~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 39 SEMNRMIQRLR-AEIDNVKKQCANLQNAIADAEQRGE--LALKDARNKLAELEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444433332 2455555555556555544333332 2233444455556666666666655555543
No 99
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=66.74 E-value=7.8 Score=39.22 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=41.0
Q ss_pred HHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 255 KRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 255 rRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
+|..||+|++.- --++++..|..+.+.++.+++.|+.+...+.+++..+|.+
T Consensus 19 v~~~~~~R~~~~----~~vd~~~~ld~~~r~~~~~~e~l~~~~N~~sk~ig~~~~~ 70 (522)
T 3vbb_A 19 IRETQEKRFKDP----GLVDQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKK 70 (522)
T ss_dssp HHHHHHHTTSCT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666431 1288999999999999999999999999999999877653
No 100
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=66.41 E-value=13 Score=28.45 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
-+.+..|+..+..+..+++.|..++..+..++..+|.++..
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777777777777777776654
No 101
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=66.32 E-value=16 Score=27.99 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
..+..||.+..+++.+++...+|..
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq 36 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQ 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 102
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=66.31 E-value=22 Score=27.55 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
.+..||.+..+++.+++...+|.
T Consensus 36 ~i~~lE~el~~~r~e~~~ql~EY 58 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQLDEY 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443
No 103
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=66.31 E-value=19 Score=29.31 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
..|..++..-+........++..+.+.++.|.-+.|
T Consensus 29 ~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 29 KRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444455555554444
No 104
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.29 E-value=36 Score=34.06 Aligned_cols=32 Identities=9% Similarity=0.066 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
++++..|..+.+.++.+++.|+.+...+.+++
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 105
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=66.06 E-value=21 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.+||...+.|+.....|...++-+..|-..+.+.+
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 46777777777777777777777777777776654
No 106
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.81 E-value=17 Score=29.58 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.++.++..|++.+....-.+-.+..+++.|...
T Consensus 66 ~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eE 98 (119)
T 3ol1_A 66 EAENTLQSFRQDVDNASLARLDLERKVESLQEE 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777788888887654
No 107
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=65.61 E-value=11 Score=37.71 Aligned_cols=37 Identities=16% Similarity=0.013 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
++++..|..+.+.++.+++.|+.+...+.+++..+|.
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999999988766
No 108
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=65.45 E-value=15 Score=29.96 Aligned_cols=7 Identities=0% Similarity=0.368 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy4245 306 HYKKQYE 312 (328)
Q Consensus 306 ~yK~K~e 312 (328)
.+|.||+
T Consensus 52 dfk~KyE 58 (119)
T 3ol1_A 52 RLREKLQ 58 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHhhH
Confidence 3344443
No 109
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=64.78 E-value=10 Score=34.17 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
|..+++.|..+++++..-++.++..++.+.
T Consensus 81 L~~~~~~L~~~~~~L~~~~~~l~~~i~~~~ 110 (249)
T 3qao_A 81 LDMQRHLLIEKKQRIETMLATLDLTIKNEK 110 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444443
No 110
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=64.77 E-value=13 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
.||+++..|..+...|..|+++++..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35555555555555555555555443
No 111
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=64.63 E-value=11 Score=33.75 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.+..|+.++++|++|+++|++|.+..-.++|
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555556666666666666665555554
No 112
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.62 E-value=11 Score=29.48 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
++.++..|++.+..+.-.+-.+..+++.|..
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~e 77 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQE 77 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555543
No 113
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=64.01 E-value=16 Score=29.34 Aligned_cols=34 Identities=12% Similarity=0.315 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++..|+.++..|..|++.+.+|...++...+.+.
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555443
No 114
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=62.97 E-value=20 Score=31.65 Aligned_cols=56 Identities=9% Similarity=0.237 Sum_probs=27.1
Q ss_pred hhch--HHHHHhHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 259 LKNR--GYAQNCRSKRLHQR-QEL-EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 259 LKNR--GYAQnCRkKRLqq~-~~L-E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.||. .|..++|+. ++.. ..| ++++..+...++.++.-+..- +.+.|+.+++.|...
T Consensus 147 ~kn~le~~i~~~~~~-l~~~~~~l~~~~k~~i~~~l~~~~~~L~~~--~~~~i~~~~~~L~~~ 206 (219)
T 4e81_A 147 TRNQGDHLLHSTRKQ-VEEAGDKLPADDKTAIESALTALETALKGE--DKAAIEAKMQELAQV 206 (219)
T ss_dssp HHHHHHHHHHHHHHH-HHHHGGGSCHHHHHHHHHHHHHHHHHHHSS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHhhhhCCHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 4554 355555543 3221 112 344444555555554443321 456777777777654
No 115
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.84 E-value=10 Score=27.57 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.|+.+++.|..++..|..++..++..+..|.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555554443
No 116
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=62.71 E-value=5.7 Score=34.60 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=30.8
Q ss_pred CChhHhhcccH-HHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSV-RELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 224 fSDEeLVsmSV-rELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
+++++|..+.. +.| +. .|+|-++|+.+ |.++ .. +-..-|+.....|+++++.|+..++.+..
T Consensus 45 y~~~~~~~l~~i~~l-~~-~g~~l~~i~~~------~~~~--~~-------~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (278)
T 1r8e_A 45 YTDSQLIHLDLIKSL-KY-IGTPLEEMKKA------QDLE--ME-------ELFAFYTEQERQIREKLDFLSALEQTISL 107 (278)
T ss_dssp EETGGGGHHHHHHHH-HH-TTCCHHHHHHH------TTSC--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-HH-CCCCHHHHHHH------HHhC--hH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566554422 111 11 48888777655 4443 11 11233444444455555555444444444
Q ss_pred HHHHH
Q psy4245 303 ERNHY 307 (328)
Q Consensus 303 Erd~y 307 (328)
-++.+
T Consensus 108 ~~~~~ 112 (278)
T 1r8e_A 108 VKKRM 112 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 117
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=62.37 E-value=26 Score=27.25 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.+++++...+..++..|+.+...+..++..++..+..|..
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566677778888888888888888888888888887754
No 118
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=62.35 E-value=23 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++.++..+..+++.|..|+-.|+.-|..+.+.
T Consensus 60 ~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 60 LEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666666777777777777777666554
No 119
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=62.09 E-value=17 Score=32.90 Aligned_cols=38 Identities=8% Similarity=0.209 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+..|+.++..|+.+++.|+.+..|+.-|.+.||.|.++
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666543
No 120
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=61.59 E-value=19 Score=24.76 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
.||+.+.+|-.+...|..|+++++.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 121
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.56 E-value=12 Score=29.22 Aligned_cols=13 Identities=8% Similarity=0.317 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q psy4245 300 IVEERNHYKKQYE 312 (328)
Q Consensus 300 l~rErd~yK~K~e 312 (328)
+.-..+.+|.|||
T Consensus 26 ~~~~~edfk~KyE 38 (86)
T 3swk_A 26 LAEDIMRLREKLQ 38 (86)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444544
No 122
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=61.24 E-value=11 Score=27.96 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.|+.+++.|..|++.|..|++.++..+
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555433
No 123
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=61.13 E-value=23 Score=33.46 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
..+.++++|++|++++.++++.+..+++
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (487)
T 3oja_A 439 MYQHKETQLAEENARLKKLNGEADLALA 466 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence 3444555555555555555555444433
No 124
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.37 E-value=27 Score=27.11 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+..|+.|..++.+...++..++..|++++
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334455555555555555555555555543
No 125
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=60.22 E-value=42 Score=25.71 Aligned_cols=18 Identities=6% Similarity=0.250 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 298 KQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 298 ~rl~rErd~yK~K~e~L~ 315 (328)
..+..+++.++..++.++
T Consensus 59 ~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666665554
No 126
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=60.15 E-value=12 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.305 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+..|-.+.+.|..|+++++
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455555555555555555555543
No 127
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=59.65 E-value=30 Score=28.57 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++--+-|++-|.+....++..+..+++|.....++.+..|..+..|...
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~ 73 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQ 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334567777777777778888888888888888888888888777654
No 128
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.18 E-value=15 Score=26.09 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..|-++++++-+|++.....+..|+.|+..|...
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999999998888643
No 129
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=59.07 E-value=26 Score=37.89 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=12.7
Q ss_pred hHHHHHHhhhcccCCC---ccchhhhc
Q psy4245 19 LADEYVQEFVLDHFED---VNVKREII 42 (328)
Q Consensus 19 ladeYvqeFvL~Hld~---~~vKre~~ 42 (328)
+|.|-+|.|-.+|.=. .--++|-+
T Consensus 483 y~nEkLq~~f~~~~f~~eq~ey~~Egi 509 (1184)
T 1i84_S 483 YTNEKLQQLFNHTMFILEQEEYQREGI 509 (1184)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCC
Confidence 4555666666665422 33455555
No 130
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=59.04 E-value=44 Score=24.95 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
++....|.+++..|+++..+|++-+++=.+.|..+..-
T Consensus 9 VDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 9 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777776666555555444433
No 131
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.97 E-value=17 Score=25.09 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
..++|..++..|+.|+.+|+..+..
T Consensus 9 kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3456666666666666666665554
No 132
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=58.79 E-value=15 Score=25.10 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+...|..|+++++
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 355555555555555555555543
No 133
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=58.45 E-value=28 Score=33.56 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRLH-QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRLq-q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+..|..--.+||.|.-+-.=-+.+|+ ....-..+..+|++++.+|+-++-+|.+.+|.|...+
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L 263 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWL 263 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 666777777788888766433333343 3344444556688999999999999999888876443
No 134
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=58.45 E-value=9.1 Score=24.79 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 292 KMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 292 ~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+|+++++++++|+.++.-.+.+|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34444555555555554444433
No 135
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=58.24 E-value=26 Score=27.43 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 272 RLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 272 RLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|-++|..|++....--+..++|..|+-.+.-|-+.+.+|+.+|+.
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 345666666666666678888888888888888888888887754
No 136
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.08 E-value=20 Score=33.72 Aligned_cols=89 Identities=7% Similarity=0.022 Sum_probs=43.5
Q ss_pred HhhcccHHHHHHhcCC-CCHHHH-HHH-HHHHhhhhchHHHHHhHHHHH---HHHHHHHHHHHH----------------
Q psy4245 228 LLMCLSVRELNKKLHG-YPRDQI-AKL-KAKRRTLKNRGYAQNCRSKRL---HQRQELEVTNKH---------------- 285 (328)
Q Consensus 228 eLVsmSVrELNrlL~G-LSkeEv-~~L-KQrRRTLKNRGYAQnCRkKRL---qq~~~LE~E~~~---------------- 285 (328)
++.+.=.+.++..+.| .+.++. ..+ +++.+.|+.=.+-.-|+...- +++.++++...+
T Consensus 352 ~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (471)
T 3mq9_A 352 AFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 431 (471)
T ss_dssp HHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence 4444445677777755 565544 222 334444555455555664431 222222222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 --LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 --L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|++++.+-.+.++++.-|+..+.++++.+.-
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 432 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555566666666666666543
No 137
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.87 E-value=16 Score=24.96 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+..|-.+...|..|+++++
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455566666666666655555553
No 138
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=57.78 E-value=11 Score=29.33 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+.+++.|..+++++..-++.+..++
T Consensus 79 l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 79 LRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444
No 139
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=57.64 E-value=18 Score=39.07 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccC
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRS-KRLHQRQELEVTNKHLQQQLQKMKSEIKQ--IVEERNHYKKQYEIVMRNKDRS 321 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRk-KRLqq~~~LE~E~~~L~~Ele~Lk~E~~r--l~rErd~yK~K~e~L~~~~f~~ 321 (328)
...++..+-++...|.++..+--|.. -++++...+-.++..|+++++.|+++++. -..-++.|++++.-|++.+|=.
T Consensus 852 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~ 931 (1108)
T 3l9o_A 852 EDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCT 931 (1108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHSSCTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHTSCT
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcCCcC
Confidence 34566666667777888888777764 24455566667777888899999888874 4556788999999999998865
Q ss_pred c
Q psy4245 322 E 322 (328)
Q Consensus 322 ~ 322 (328)
+
T Consensus 932 ~ 932 (1108)
T 3l9o_A 932 P 932 (1108)
T ss_dssp T
T ss_pred C
Confidence 3
No 140
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=57.55 E-value=15 Score=24.93 Aligned_cols=24 Identities=8% Similarity=0.188 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+...|..|+++++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455555555555555555555543
No 141
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=57.50 E-value=37 Score=30.40 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
++...|..++..|+.+.++|..+++++..
T Consensus 139 ~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 139 AKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 142
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=57.42 E-value=33 Score=31.41 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAKRRT-LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRT-LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
.+.+..--..|=.+||. |. .=|++...|-.++..|+.++..|+.|+.+
T Consensus 92 e~Pse~YWk~lAE~RR~AL~----------eaLeEN~~Lh~~ie~l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 92 ENPSSQYWKEVAEKRRKALY----------EALKENEKLHKEIEQKDNEIARLKKENKE 140 (209)
T ss_dssp CSCCTTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777775 32 12445555444455555555555444443
No 143
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=57.23 E-value=42 Score=24.39 Aligned_cols=34 Identities=3% Similarity=0.067 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
+.+|..++..|-.+++.|..++..++-+...-|.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~ 39 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKD 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555544443
No 144
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=57.08 E-value=26 Score=26.76 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhccccCccccc
Q psy4245 282 TNKHLQQQLQKMKSEI------------KQIVEERNHYKKQYEIVMRNKDRSEAEHL 326 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~------------~rl~rErd~yK~K~e~L~~~~f~~~~~h~ 326 (328)
+...|+.|+.+|+.|+ +++.|..|.+...|+.+...+.++.--||
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~~~~~~ 63 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENHHHH 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3445666666666664 45777777777777777777666654443
No 145
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=57.04 E-value=20 Score=31.84 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=39.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 237 LNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ--RQELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 237 LNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq--~~~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
|+.-|..|...++..|...|+.+-+|-..-++-++|+.. .++|+.-........+.+..++..
T Consensus 139 ~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~~fe~~~e~~~~~m~~ 203 (256)
T 1zww_A 139 FIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFN 203 (256)
T ss_dssp THHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555678999999999999999999988887754 333443333333334444443333
No 146
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=56.90 E-value=17 Score=24.67 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+...|..|+++++
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666666655555555555543
No 147
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.85 E-value=50 Score=32.66 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=62.1
Q ss_pred hHhhcccHHHHHHhcCCC------CHHHHHHHHHH----Hhhhhc--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 227 DLLMCLSVRELNKKLHGY------PRDQIAKLKAK----RRTLKN--RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMK 294 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GL------SkeEv~~LKQr----RRTLKN--RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk 294 (328)
+.=|.-.+.+|+..|..+ +.+-|..||+. -+..+| .+|-|..+ |=|++++.||.-+.....+|..|+
T Consensus 33 e~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Sk-kml~~~~~~~~~~~~~~~~i~~l~ 111 (411)
T 3ghg_C 33 QTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSR-KMLEEIMKYEASILTHDSSIRYLQ 111 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHH-HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334556677787777433 33455556553 224555 34444443 347889999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 295 SEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 295 ~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..+......+..+++++..|...
T Consensus 112 ~~~~~~~~~i~~L~~~v~~l~~~ 134 (411)
T 3ghg_C 112 EIYNSNNQKIVNLKEKVAQLEAQ 134 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888764
No 148
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.63 E-value=37 Score=32.68 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++.+|+.+++.++.+++.|+.++.+-..+|..|...++.|.+.
T Consensus 18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 18 KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555556666666665555566666666666666554
No 149
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.27 E-value=38 Score=27.08 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.+.-|+..+..|...++.|...++++...++.+...++.+++
T Consensus 88 eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 88 DAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777777777777777777777777777777777764
No 150
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.89 E-value=19 Score=35.01 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..||.++..|..|.+.++.|...+.+|...++.+++.|+.
T Consensus 52 k~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 52 KKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3466666777777777777777777777777777777764
No 151
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=55.80 E-value=22 Score=29.45 Aligned_cols=32 Identities=13% Similarity=0.178 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|..+++.|..+++++..-++.++.+++.+..
T Consensus 84 ~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~~ 115 (146)
T 3hh0_A 84 QMHFQREVLLAEQERIAKVLSHMDEMTKKFQK 115 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666666666666666666665543
No 152
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=55.37 E-value=5.6 Score=25.74 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
.||-|+..|++.+..|+++++.
T Consensus 4 alefendaleqkiaalkqkias 25 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHH
Confidence 3455555555555544444443
No 153
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=55.03 E-value=11 Score=27.73 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=18.6
Q ss_pred hhhhchHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 257 RTLKNRGYAQNCRSKRLHQR-QELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 257 RTLKNRGYAQnCRkKRLqq~-~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
-.||||++-.---.-|++.+ ..||.++..|+.++..|.+.++-+.
T Consensus 6 aqlknrvayklkenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34778775332222334333 3455555555555555555444443
No 154
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=54.83 E-value=21 Score=23.81 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
.||+|+.+-+++--+|.+|++++..|
T Consensus 5 qlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45555555555555555555555443
No 155
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=54.83 E-value=44 Score=26.62 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHHHHhh
Q psy4245 242 HGYPRDQIAKLKAKRRT 258 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRT 258 (328)
.+.|..--+.|=.+||.
T Consensus 15 e~pse~YWk~lAE~Rr~ 31 (83)
T 1wlq_A 15 ENPSSQYWKEVAEQRRK 31 (83)
T ss_dssp CCTTCTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 45566666666666664
No 156
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=54.82 E-value=33 Score=24.87 Aligned_cols=30 Identities=10% Similarity=0.274 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.|+.++..|...+++|......-+.++..|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~L 42 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLAL 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 157
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=54.78 E-value=11 Score=29.73 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+..|..++..|+..+..+.+|||.|=.|+-.+
T Consensus 3 i~~L~~ei~eLk~~ve~lEkERDFYF~KLRdI 34 (82)
T 3tq7_B 3 ILELNQQLVDLKLTVDGLEKERDFYFSKLRDI 34 (82)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999999998877553
No 158
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.25 E-value=94 Score=25.86 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.+-++.+.-|+..+..-+.+-..=+.-.+++..|++.|+..++.|.+.
T Consensus 57 ~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q 105 (110)
T 2v4h_A 57 HKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE 105 (110)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence 4444677777777777766666666666666777777777777776654
No 159
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.19 E-value=1.1e+02 Score=26.49 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+..||++...-......+..++.....++..|..++-.|...
T Consensus 106 ~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~ 148 (155)
T 2efr_A 106 SIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENE 148 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3455555555555555555555555555555555555555443
No 160
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.17 E-value=7.9 Score=25.06 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 290 LQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 290 le~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++.|.-|+..+.+.+.++|+|+..|.
T Consensus 2 idalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 2 IDALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhccHHHHHHHHHHHHHHHHhc
Confidence 44566677777778888888887764
No 161
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=54.02 E-value=71 Score=31.93 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHH-HHHHH---------------------------HHHHHH----HHH-HHH
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ-RQELE---------------------------VTNKHL----QQQ-LQK 292 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq-~~~LE---------------------------~E~~~L----~~E-le~ 292 (328)
-+++..|-++||.++-+.=+...+.+.+.. +-.+. .+...| .++ ...
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKD 115 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHH
Confidence 578888888888877665444444433322 11111 122345 566 778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 293 MKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 293 Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|+.++..+..+...+..+++.+...
T Consensus 116 l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 116 LSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888776654
No 162
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=53.55 E-value=59 Score=24.74 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++..++.....--++.+++|-+=+..+..|+..+..+++.|++.
T Consensus 13 qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 13 QEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 34444444444455666666666667777777777777666643
No 163
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=53.50 E-value=36 Score=30.23 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 263 GYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 263 GYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
.||-.|-.|....+..||++......+-..+.+++.+...|+
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467666666556666666655555555555555555544443
No 164
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=53.36 E-value=20 Score=31.63 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=42.3
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q psy4245 232 LSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ--RQELEVTNKHLQQQLQKMKSE 296 (328)
Q Consensus 232 mSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq--~~~LE~E~~~L~~Ele~Lk~E 296 (328)
.-.+.|+.-|..+-+.++..+...|+.+-+|--.-+|-+.|+.. .++|+.....+....+.+..+
T Consensus 118 ~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~~~fe~~~e~~~~~ 184 (240)
T 2z0v_A 118 NVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERS 184 (240)
T ss_dssp HHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666677789999999999999999888888777654 334444333333333333333
No 165
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.34 E-value=20 Score=24.38 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+...|..|+++++
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555555555555544
No 166
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=52.94 E-value=21 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.205 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+.+.|..|+++++
T Consensus 5 QLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 5 QIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 455555555555555555555543
No 167
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=52.34 E-value=23 Score=27.31 Aligned_cols=51 Identities=16% Similarity=-0.002 Sum_probs=33.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy4245 269 RSKRLHQ-RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKD 319 (328)
Q Consensus 269 RkKRLqq-~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f 319 (328)
|.-.|+. +--+|+.+.+|...+-+..+++.++.+.+..+..|+..+..+.+
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~~~ 66 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLF 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 4444433 34567788888888888888888888899999999888876643
No 168
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=51.92 E-value=22 Score=24.21 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.||+.+.+|-.+...|..|+++++
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456666666666666666666654
No 169
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.76 E-value=87 Score=34.02 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=4.9
Q ss_pred HHHHHHhhhccc
Q psy4245 20 ADEYVQEFVLDH 31 (328)
Q Consensus 20 adeYvqeFvL~H 31 (328)
|.|-+|.|--+|
T Consensus 457 ~NEkLQq~F~~~ 468 (1080)
T 2dfs_A 457 ANEKLQQQFNMH 468 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 334444443333
No 170
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=51.41 E-value=22 Score=23.69 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+.+|+.++.+...|+-++.+|...+...|
T Consensus 2 evaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 567778888888888888888777776654
No 171
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.28 E-value=96 Score=25.24 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQ-R----QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq-~----~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++||.++|..=.+|.-..-++.+.+..|+. + ...+.+...++..+..|..++.+++.++....+.|+.|..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665444444444333333322221 1 1223344455555666666666666666665555655543
No 172
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=51.12 E-value=41 Score=29.39 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK---QYEIVMRN 317 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~---K~e~L~~~ 317 (328)
++.++.||.|+..++..|++-+.++.+|......+|. |-..+.+.
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~ 51 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQ 51 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556677777777777777777777766666555554 34444443
No 173
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=50.64 E-value=83 Score=25.86 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR----QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~----~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
++.+++.+|+.++.- |+-|+.-.-=++=++.. ..++.-...|+.+++.|.++++++.+-++.+..+++.+...
T Consensus 55 Y~~~dl~~l~~I~~l-r~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 131 (148)
T 3gpv_A 55 FNEEALKYLEMILCL-KNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDE 131 (148)
T ss_dssp BCHHHHHHHHHHHHH-HTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred cCHHHHHHHHHHHHH-HHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999876 77776543322222211 12344456688889999999999888888888888776654
No 174
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=50.23 E-value=25 Score=31.36 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=31.8
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
|.+...| ++.+.+|..++.+|+++-++|++|-+++..+.+
T Consensus 144 ~elid~~----ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 144 RELICYC----LDTIAENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555 778888999999999999999999988877653
No 175
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.93 E-value=82 Score=26.02 Aligned_cols=33 Identities=6% Similarity=0.138 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+..|++++..|+...+.|+..+..+.+.-|.|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 444555555555444444444444444444443
No 176
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=49.70 E-value=66 Score=24.28 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+..++..|++.+..+..+.+.+..++..
T Consensus 39 ~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 39 LEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 177
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=49.57 E-value=53 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
|+.+++.+..+...+.+|||.|=.|+...
T Consensus 14 Lk~Ekdna~e~~e~lE~ERdFYf~KLRdi 42 (75)
T 3mtu_A 14 LKLDKENALDRAEQAEADKDFYFGKLRNI 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66677777777777888888877666543
No 178
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=49.41 E-value=54 Score=24.39 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRS 321 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~ 321 (328)
|..++++.+.++++..++...-|+|-+.|....++.
T Consensus 22 L~~~lE~~~~~Lee~t~~L~~EK~ktd~LL~~mLP~ 57 (66)
T 3hls_A 22 LTQELEMLTDRLQLTLRALEDEKKKTDTLLYSVLPP 57 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 666777777788888888888899999998877664
No 179
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=49.31 E-value=44 Score=26.71 Aligned_cols=42 Identities=7% Similarity=0.056 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
...|.....+++.+++.|..++..+...+..|+.-++.|...
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777888888888888888888888888877777654
No 180
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.23 E-value=13 Score=34.87 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
.++++.|+.++..|+.|+++|..+++...+.
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5678888888888888888888777766665
No 181
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.14 E-value=34 Score=33.18 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++|+.++++++.+++.++.++.+...+|..|...+..|..
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 19 TEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444455555555555555555555555555555555544
No 182
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.05 E-value=53 Score=28.67 Aligned_cols=57 Identities=9% Similarity=0.081 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhhchHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQN--CRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQn--CRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
..|..|+..+..+++|+--.. ++-| -..++.|-+|...|+-+...+..++.++..|-
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK-~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALK-NKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666665542211 1111 11223344444444444444444444444444
No 183
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=48.48 E-value=1e+02 Score=25.09 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=35.4
Q ss_pred ccHHHHHHhcCCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 232 LSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 232 mSVrELNrlL~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
|+..+|...|. +|+..++.---.|. .-...=|..+.++..+.+-.+|..|-.+++.+..+..++..
T Consensus 4 m~~~~L~~~L~----~~~~~l~~L~~lL~-~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~ 69 (154)
T 3opc_A 4 MNSAALKSCLE----RENALVVEFLHALE-AETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLS 69 (154)
T ss_dssp CCHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666664 44444444444443 22233333233556666666666666666666666555543
No 184
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=48.42 E-value=89 Score=24.61 Aligned_cols=31 Identities=6% Similarity=0.095 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy4245 291 QKMKSEIKQIVEERNHYKKQYEIVMRNKDRS 321 (328)
Q Consensus 291 e~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~ 321 (328)
..+...+...+.+++.+|..+..+....-++
T Consensus 70 ~~~~~klr~Yk~dL~~lk~elk~~~~~~~~~ 100 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDFKRSRIASGPS 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3455555556666666666666665554333
No 185
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=48.04 E-value=50 Score=26.01 Aligned_cols=56 Identities=16% Similarity=0.300 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhh-hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 243 GYPRDQIAKLKAKRRT-LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 243 GLSkeEv~~LKQrRRT-LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
|-|..--..|=.+||. |. .-|++...|-.++.+++.++..|+.|+..+..-.+..+
T Consensus 12 ~Pse~YWk~lAE~RR~AL~----------eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 12 NPSSQYWKEVAEQRRKALY----------EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp CTTCTHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554 33 12455555555555566666666665444433333333
No 186
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.89 E-value=45 Score=32.76 Aligned_cols=47 Identities=11% Similarity=0.042 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|=++++..||..+.....++..|+..+..+...++.+++++..|...
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33678888888888888889999988888888899999988888753
No 187
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=47.84 E-value=29 Score=33.58 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
...|-.+.+.|..+++.|..++..+..+++.
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 66 KEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 188
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.64 E-value=38 Score=23.42 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rE 303 (328)
|..+++.-..|+++++.|
T Consensus 12 Lhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 12 LHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333333333333333333
No 189
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=47.58 E-value=53 Score=27.95 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=29.8
Q ss_pred hcccHHHHHHhcCCCCHHHHHHHHHHHhhhhc------hHHHHHhHHHHHH
Q psy4245 230 MCLSVRELNKKLHGYPRDQIAKLKAKRRTLKN------RGYAQNCRSKRLH 274 (328)
Q Consensus 230 VsmSVrELNrlL~GLSkeEv~~LKQrRRTLKN------RGYAQnCRkKRLq 274 (328)
+.-..++|.+....|.++|.+....++...|+ |.||.++-.+|.+
T Consensus 19 L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~ 69 (179)
T 2gd5_A 19 IRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA 69 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34456667776667777887776666666653 6688888666543
No 190
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.54 E-value=99 Score=24.17 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4245 290 LQKMKSEIKQIVEERN 305 (328)
Q Consensus 290 le~Lk~E~~rl~rErd 305 (328)
+..|++.+..+..+.+
T Consensus 46 i~sL~kKiq~lE~eld 61 (101)
T 3u59_A 46 QQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 191
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=47.15 E-value=18 Score=30.28 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=5.5
Q ss_pred CCCHHHHHHH
Q psy4245 243 GYPRDQIAKL 252 (328)
Q Consensus 243 GLSkeEv~~L 252 (328)
|+|-++|..+
T Consensus 67 G~sl~eI~~~ 76 (154)
T 2zhg_A 67 GIPLATIGEA 76 (154)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 6665555444
No 192
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=46.87 E-value=33 Score=21.98 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~r 299 (328)
.|.+|+.+|.-|+..|+.|+..
T Consensus 4 qlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhc
Confidence 4556666666666666655543
No 193
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=46.77 E-value=33 Score=27.31 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
+..||.+..+++.+++...+|-.
T Consensus 46 i~~lE~eL~~~r~e~~~ql~EYq 68 (95)
T 3mov_A 46 LTDKEREMAEIRDQMQQQLNDYE 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444433
No 194
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=46.63 E-value=43 Score=30.57 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ---YEIVMRNK 318 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K---~e~L~~~~ 318 (328)
..++|.....+..++..|..+++++..+++.++.+ ++.|....
T Consensus 94 ~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~ 139 (357)
T 3rrk_A 94 LEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALA 139 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Confidence 56677778888888888888888888888888888 88876443
No 195
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=46.61 E-value=49 Score=22.76 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
..+|+..++.|..++..+..|...+|..+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556666666666666666555555443
No 196
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=46.51 E-value=59 Score=25.57 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+-=.|+..|..+++.++.|++.++.|...+|.-.+..+
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333358889999999999999999999888877665544
No 197
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.28 E-value=1e+02 Score=30.52 Aligned_cols=37 Identities=11% Similarity=0.038 Sum_probs=19.3
Q ss_pred HhhcccHHHHHHhc---CCCCHHHHHHHHHHHhhhhchHH
Q psy4245 228 LLMCLSVRELNKKL---HGYPRDQIAKLKAKRRTLKNRGY 264 (328)
Q Consensus 228 eLVsmSVrELNrlL---~GLSkeEv~~LKQrRRTLKNRGY 264 (328)
+=+...+++|+..| ...+++=-..++.+--.||.|..
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~ 102 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFA 102 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33455667777766 23444444445555555554443
No 198
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.22 E-value=87 Score=25.47 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+.....|.|+..|+.++..|+..++....-+..+.
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g 45 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELG 45 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555556655555555554443333333
No 199
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=45.95 E-value=91 Score=33.71 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhhhhchHHH
Q psy4245 246 RDQIAKLKAKRRTLKNRGYA 265 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYA 265 (328)
..++..++.+-..++++..+
T Consensus 856 ~~El~~L~~eL~el~~~L~~ 875 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQK 875 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 200
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=45.88 E-value=1.1e+02 Score=24.15 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+|.++..|+..+..|..++.++.......+.+++
T Consensus 42 ~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333333
No 201
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.81 E-value=29 Score=24.72 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
|+..|..|+..+.+...++|.|++.|.
T Consensus 21 elaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666777777777663
No 202
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.72 E-value=1.1e+02 Score=30.69 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=13.3
Q ss_pred ChhHhhcccHHHHHHhcCCC
Q psy4245 225 SDDLLMCLSVRELNKKLHGY 244 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL~GL 244 (328)
.-++-|.-++.||+..|.-|
T Consensus 93 k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHH
Confidence 44555667788888887544
No 203
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=45.62 E-value=98 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
...++..+..|..++.+++.++....+.|+.|
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554444444444
No 204
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=45.60 E-value=15 Score=33.51 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
|.-|+...+++-.+...+..++++|..|+..+.++++.+|+
T Consensus 136 RE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333334444444444444443333333333
No 205
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.39 E-value=78 Score=27.92 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
.+|+..+..|..+++.++....++.-|...
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333
No 206
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=45.19 E-value=33 Score=27.34 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHHHHHHhhhhchHHHHHhHHHHHH-HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 250 AKLKAKRRTLKNRGYAQNCRSKRLH-QRQELEVTNKH------LQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 250 ~~LKQrRRTLKNRGYAQnCRkKRLq-q~~~LE~E~~~------L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
..+.+.=-+| +|+|.+|-..++. -...||...+. ++.++..|..|+.++..+.+.|..+
T Consensus 50 ~~l~~~aHkL--kGaa~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 50 ATMLSTIHKL--HGASCYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHH--HHHHTTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445 5999999999984 45677766433 5678888888888888888777665
No 207
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=45.17 E-value=71 Score=27.61 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+.+++.+|+.++.- |+-|.--.==++-++.. .+.-...|+.+++.|.++++++.+-++.++.+++.+..
T Consensus 45 y~~~~~~~l~~i~~l-~~~g~~l~~i~~~~~~~--~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (278)
T 1r8e_A 45 YTDSQLIHLDLIKSL-KYIGTPLEEMKKAQDLE--MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKR 114 (278)
T ss_dssp EETGGGGHHHHHHHH-HHTTCCHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777554 55554322111111111 23334557777888888888888777777777766554
No 208
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=44.18 E-value=64 Score=28.42 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
.+.|+.++..|+.+++.|.+++..+..+++.++.+..++.
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999999999999999444443
No 209
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=43.79 E-value=73 Score=22.70 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEER----NHYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rEr----d~yK~K~e~L~~ 316 (328)
+||..+..|+.-++.|+-..+++.-|- ..+|+++..|..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666666666666666666665554 456777777754
No 210
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=43.78 E-value=83 Score=25.05 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
+..-..+|+.|..++.+..+.+..+|.
T Consensus 53 l~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444444443
No 211
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.64 E-value=2e+02 Score=27.05 Aligned_cols=24 Identities=4% Similarity=-0.006 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
++.++++++++.+.+..|++.+++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHH
Confidence 334444444444444444444444
No 212
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=43.52 E-value=75 Score=25.68 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|++++++|..|++.+..++..-|..++....
T Consensus 54 L~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~ 84 (93)
T 3sjb_C 54 NNRKLDSLDKEINNLKDEIQSENKAFQAHLH 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888888777777766543
No 213
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.42 E-value=38 Score=22.93 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|..++..+..|...+|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35666777777777777777666654
No 214
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.06 E-value=56 Score=22.93 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
+...+.++..++..+..++..+|..+
T Consensus 31 ~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 31 AKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433
No 215
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=42.90 E-value=47 Score=27.40 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
.+++.+|..++..|+..++.|.+|+...=
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERDFYF 45 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIEREFYF 45 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777766543
No 216
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=42.41 E-value=44 Score=29.57 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=9.4
Q ss_pred HhhcccHHHHHHhc
Q psy4245 228 LLMCLSVRELNKKL 241 (328)
Q Consensus 228 eLVsmSVrELNrlL 241 (328)
.|-++|+.||..+|
T Consensus 34 ~L~~LS~~eL~~LL 47 (192)
T 2p22_C 34 GINLLSSKEIIDLI 47 (192)
T ss_dssp GGGSCTTHHHHHHH
T ss_pred HHHhCCHHHHHHHH
Confidence 36667777777666
No 217
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=42.33 E-value=64 Score=29.42 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.2
Q ss_pred HHHhhhcccCCC
Q psy4245 23 YVQEFVLDHFED 34 (328)
Q Consensus 23 YvqeFvL~Hld~ 34 (328)
.+|+|-+=|+++
T Consensus 32 ~L~~lg~vhi~d 43 (357)
T 3rrk_A 32 ELQKAGVVHIDP 43 (357)
T ss_dssp HHHHHTCEEEEE
T ss_pred HHHHcCcEEEEe
Confidence 344444444443
No 218
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=42.32 E-value=53 Score=29.62 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=34.9
Q ss_pred hhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhc------hHHHHHh-HHHHH
Q psy4245 229 LMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKN------RGYAQNC-RSKRL 273 (328)
Q Consensus 229 LVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKN------RGYAQnC-RkKRL 273 (328)
.+.-..|+|.+-++.|.++|.+....++...|. |.||.+. |+||.
T Consensus 18 ~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~ 69 (218)
T 3frt_A 18 KIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKA 69 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344567778887788999999999999998886 8888888 55543
No 219
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=42.25 E-value=89 Score=23.86 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 292 KMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 292 ~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.|..+++.+..+++.+-.+-+.|
T Consensus 60 ~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 60 KVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666555554
No 220
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.10 E-value=1.7e+02 Score=25.42 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
|+.|+..|+-+...+...+..++...
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 221
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=41.91 E-value=59 Score=25.17 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.+++..+...=..+|..........+.+ .....|..++..|..++.......+++......+..++..|.
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667776666666776665444444443 333455555555555544445555555555566666665554
No 222
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.53 E-value=88 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.+..+..+++.++.++.++..++..+...+..+
T Consensus 20 ~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 20 KCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555554444444444444
No 223
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.31 E-value=72 Score=32.92 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+||..+..|+.+|+.....+.-|+.-++.+..++++|..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555555555555555555555555543
No 224
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=41.15 E-value=1.4e+02 Score=24.09 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-++-.|..|+.+|.+|+..+..++-.|-.-
T Consensus 52 ~~IRdLNDEINkL~rEK~~WE~rI~eLGGp 81 (92)
T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKELGGP 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 477888888888899999999998877544
No 225
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.58 E-value=1.2e+02 Score=26.79 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
++..||.++..|+.+++.=++...+....+..+..|+..|
T Consensus 63 ~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L 102 (168)
T 3o0z_A 63 SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444433333333333333333333
No 226
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=40.43 E-value=99 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.++......+..|..|+..++.+++.|+.
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444445555555555555443
No 227
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.24 E-value=26 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKH---LQQQLQKMKSEIK 298 (328)
Q Consensus 273 Lqq~~~LE~E~~~---L~~Ele~Lk~E~~ 298 (328)
.++...||..+.+ |+.+++.|+.|+.
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543322 3344444444443
No 228
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.21 E-value=32 Score=27.58 Aligned_cols=22 Identities=5% Similarity=0.306 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 294 KSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 294 k~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.++..+.+++..+|.+++.|+
T Consensus 13 ~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 13 EDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333444444444444
No 229
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=40.09 E-value=1.2e+02 Score=23.47 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERN---HYKKQYEIV 314 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd---~yK~K~e~L 314 (328)
+..|..|+..|..++..+..|...+..|.- .+|.+|++.
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~ 47 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQ 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777766666554332 345555543
No 230
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=40.05 E-value=75 Score=26.14 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.+..|+..+..|...+++|...++.+...++.+...++.+++.
T Consensus 98 eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 98 EAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677777777777777777777777777777654
No 231
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=39.93 E-value=1.1e+02 Score=30.30 Aligned_cols=16 Identities=0% Similarity=0.111 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhcc
Q psy4245 303 ERNHYKKQYEIVMRNK 318 (328)
Q Consensus 303 Erd~yK~K~e~L~~~~ 318 (328)
+.+.|+.+++.|....
T Consensus 580 ~~~~~~~~~~~l~~~~ 595 (605)
T 2kho_A 580 DKAAIEAKMQELAQVS 595 (605)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4567788888776543
No 232
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=39.91 E-value=83 Score=23.38 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHHh
Q psy4245 242 HGYPRDQIAKLKAKRR 257 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRR 257 (328)
-|||-+||..+=+-+.
T Consensus 15 lGfsL~eIk~~l~~~~ 30 (99)
T 1q08_A 15 LGFSLESIRELLSIRI 30 (99)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999888766553
No 233
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=39.64 E-value=99 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQK-------MKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~-------Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+..||..+..|...++. |..++..+..+++.+|..++.+
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444 4444444555555555555544
No 234
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.62 E-value=58 Score=25.65 Aligned_cols=31 Identities=6% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.+|-.|.+.|+.|+..+.+-+..++.|+..|
T Consensus 40 dELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 40 DELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 235
>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.33 E-value=24 Score=30.18 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=16.6
Q ss_pred CCChhHhhcccHHHHHHhc
Q psy4245 223 LISDDLLMCLSVRELNKKL 241 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL 241 (328)
+++.|||.+||.+||-+++
T Consensus 10 G~~ld~L~~ms~~~l~~L~ 28 (132)
T 3j20_T 10 GYTLEQLMNMSLEELARLF 28 (132)
T ss_dssp SSCHHHHHHHHHHHHHHHS
T ss_pred CCcHHHHHcCCHHHHHHHh
Confidence 4688999999999998877
No 236
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.82 E-value=93 Score=28.41 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=46.0
Q ss_pred HhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 256 RRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 256 RRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
=-.|-|-.-||+-|+.-+|| ||.+-.....+-..|....+.++.|.+.++.++++|.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~---~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 15 LNKLLDPELAQSERTEALQQ---LRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHCTTCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhcCHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 34466677788888776665 556777777788888888888999999999999999765
No 237
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=38.66 E-value=1.2e+02 Score=25.12 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rE 303 (328)
.++.+||.|+..|..|-+.|++|++...+.
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 446677778888888888888877766554
No 238
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=38.39 E-value=84 Score=27.64 Aligned_cols=65 Identities=15% Similarity=0.285 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhhchHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQ-NCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQ-nCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
|+..|..=-.+||.|.-+- +|+.+=-+.......+...|.+++.+|+-++-+|.+.+|.|...+.
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~ 155 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLT 155 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4444545555666665543 3444423444555556667899999999999999999998876543
No 239
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=37.99 E-value=76 Score=24.04 Aligned_cols=40 Identities=8% Similarity=0.113 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.|++...-|+..+.. |..|+.++..+..|...++..++..
T Consensus 37 ~k~~Ka~IL~~Ai~Y----I~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 37 AKLNKSAVLRKAIDY----IRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp CCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555554433 3444444444445555555544443
No 240
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.10 E-value=63 Score=26.46 Aligned_cols=14 Identities=14% Similarity=0.083 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhhc
Q psy4245 248 QIAKLKAKRRTLKN 261 (328)
Q Consensus 248 Ev~~LKQrRRTLKN 261 (328)
+-..|++....||.
T Consensus 12 ~~~~l~~~a~~Lk~ 25 (171)
T 2zvf_A 12 MERLLREASSILRV 25 (171)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCC
Confidence 45566666666663
No 241
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.08 E-value=1.4e+02 Score=22.80 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
.|...++..+..|..++.+++.++....+.|+.
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~ 37 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQE 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333333
No 242
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=37.04 E-value=59 Score=28.88 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+..+..||.++..|+.++...+.+...+.+++|..-
T Consensus 134 ertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl 169 (175)
T 3mud_A 134 LDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTL 169 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777888888777777777777777766543
No 243
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.97 E-value=1.5e+02 Score=25.69 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRS 321 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~ 321 (328)
+...|..++..-+........++..+.+.+|.|.-+.|.+
T Consensus 59 e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeE 98 (154)
T 2ocy_A 59 EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 98 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444445666777777777777777754
No 244
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.94 E-value=1.1e+02 Score=21.79 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEI-------KQIVEERNHYKKQYE 312 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~-------~rl~rErd~yK~K~e 312 (328)
..||.|+..|+.+-+.|++.+ +-+.+|+..++.|++
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkkie 48 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHhc
Confidence 356677777777766666553 345556665555543
No 245
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=36.77 E-value=38 Score=27.15 Aligned_cols=24 Identities=13% Similarity=0.290 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+|+.++..|++|+.+++.|++.++
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555555555555555555544
No 246
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=36.26 E-value=1.2e+02 Score=24.28 Aligned_cols=9 Identities=33% Similarity=0.586 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q psy4245 248 QIAKLKAKR 256 (328)
Q Consensus 248 Ev~~LKQrR 256 (328)
||.+|-++|
T Consensus 48 Qi~Emq~Ir 56 (92)
T 3vp9_A 48 QLAEMQQIR 56 (92)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555444
No 247
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=36.16 E-value=1e+02 Score=27.35 Aligned_cols=39 Identities=15% Similarity=0.280 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAE 324 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~~ 324 (328)
|+.+.++|+.-.+...+-.+.+++|+..|.-..|.+-++
T Consensus 32 le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d~gtt~ 70 (169)
T 3k29_A 32 LELEQEKLRERESERDKVKNHYMQKIRQLREQLDDGTTS 70 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 555555555555555555666777777777666555443
No 248
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=35.99 E-value=1e+02 Score=24.98 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
++++.|..++.+|+..++....-+..+.++...+
T Consensus 18 ~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~l 51 (125)
T 1joc_A 18 GEIEKLQTKVLELQRKLDNTTAAVQELGRENQSL 51 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3556666666666666555444444444333333
No 249
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.95 E-value=70 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQI 300 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl 300 (328)
|++.+.|-.++.+-..||.+|+.|+.++
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3444555555555555555555555554
No 250
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=35.91 E-value=28 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 269 RSKRLHQRQELEVTNKHLQQQLQKMKSE 296 (328)
Q Consensus 269 RkKRLqq~~~LE~E~~~L~~Ele~Lk~E 296 (328)
..+|+++...||.-.++|+.++..++.+
T Consensus 23 ~~~r~DEV~~Le~NLrEL~~ei~~~~~~ 50 (51)
T 1yzm_A 23 AAGRMDEVRTLQENLRQLQDEYDQQQTE 50 (51)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999998888887754
No 251
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=35.71 E-value=66 Score=21.53 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 290 LQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 290 le~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+...++|++.+++|+.++|-.+..+.
T Consensus 4 laaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 4 LAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554443
No 252
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.53 E-value=72 Score=22.60 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
.+||..+.+|+..+..|..|+.-|++
T Consensus 13 k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45677777777777777777776655
No 253
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.33 E-value=33 Score=24.70 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 288 QQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 288 ~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+++.|.+|+..+..++..++.
T Consensus 34 ~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 34 KDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444433
No 254
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.27 E-value=56 Score=31.75 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+-|+.+...++.++..+++|+.++..|+..++
T Consensus 59 ~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 59 ELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555666666666666666666655544
No 255
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=35.15 E-value=28 Score=37.13 Aligned_cols=77 Identities=13% Similarity=0.163 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhccccCc
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRS-KRLHQRQELEVTNKHLQQQLQKMKSEIKQIV--EERNHYKKQYEIVMRNKDRSE 322 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRk-KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~--rErd~yK~K~e~L~~~~f~~~ 322 (328)
..+...+-++...|+++..+.-|.. ..+++...+-.++.+|+++++.|+++++... .-.+.|++++.-|.+.+|=++
T Consensus 755 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~ 834 (1010)
T 2xgj_A 755 DEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTP 834 (1010)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCT
T ss_pred cHHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCC
Confidence 4455555566666666666654443 2334445555566778888888888877721 225789999999999888754
No 256
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=35.05 E-value=2.3e+02 Score=24.72 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=5.6
Q ss_pred CChhHhhcc
Q psy4245 224 ISDDLLMCL 232 (328)
Q Consensus 224 fSDEeLVsm 232 (328)
+|+++|-.|
T Consensus 116 Ls~eei~~~ 124 (227)
T 1u00_A 116 LTDSEIASM 124 (227)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566666655
No 257
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=34.84 E-value=2e+02 Score=24.42 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.8
Q ss_pred HHHHHhc
Q psy4245 235 RELNKKL 241 (328)
Q Consensus 235 rELNrlL 241 (328)
.|+|..|
T Consensus 85 ~eYn~rL 91 (152)
T 4fla_A 85 AEYNGRL 91 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 258
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=34.80 E-value=87 Score=20.89 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
.||.++..|+.-+++|++.+.++..
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777776666544
No 259
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=34.76 E-value=56 Score=21.90 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
|...+.+|+...++|++.++-|+.++|+
T Consensus 3 elaaikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 3 ELAAIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445677888888999999999888886
No 260
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=34.62 E-value=1.1e+02 Score=22.92 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.+.+.|..-+.+|..+++.|+....+..+|+..+.
T Consensus 11 ~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 11 RQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666777777666666666665543
No 261
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=34.38 E-value=69 Score=21.80 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|-.++..+..|...+|.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 46666777777777777776666654
No 262
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=34.37 E-value=32 Score=27.43 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMK 294 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk 294 (328)
.|+.++..|.+++..+.
T Consensus 12 ~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 12 LLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 263
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.17 E-value=89 Score=21.27 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|-.+++.+..|...+|.
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 46667777777777777766666654
No 264
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=34.05 E-value=1.1e+02 Score=30.42 Aligned_cols=35 Identities=9% Similarity=0.235 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.++..+...++.++.-+.. .+.+.|+.+++.|...
T Consensus 560 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~l~~~ 594 (605)
T 4b9q_A 560 DDKTAIESALTALETALKG--EDKAAIEAKMQELAQV 594 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHH
Confidence 3444444444444433321 2355666666666543
No 265
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=33.91 E-value=1.7e+02 Score=22.95 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=29.6
Q ss_pred HhhhhchHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 256 RRTLKNRGYAQNCRSKRLHQRQ----ELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 256 RRTLKNRGYAQnCRkKRLqq~~----~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
=-.|-|--.|++-|+.-++|.. ..|+++..|+.++...+.+...+.+++|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~eeLDq 69 (77)
T 3mtu_E 15 LNKLLDPELAQSERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQMLDQ 69 (77)
T ss_dssp HHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3345556666666666666642 45666667776666666666666666554
No 266
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.83 E-value=81 Score=26.14 Aligned_cols=31 Identities=13% Similarity=0.362 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|+.|.+....|+.+..+|.+.+-.+++.+.+
T Consensus 97 L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~ 127 (132)
T 1ykh_B 97 LQKKLVEVEDEKIEAIKKKEKLMRHVDSMIE 127 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 267
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.60 E-value=29 Score=29.70 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Q psy4245 280 EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRS 321 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~ 321 (328)
+.+...|..++..-+........++..+.+.+|.|.-+.|.+
T Consensus 45 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeE 86 (135)
T 2e7s_A 45 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDE 86 (135)
T ss_dssp HHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555667777777777777777754
No 268
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.52 E-value=1.3e+02 Score=21.41 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.+..||..+..|+....+|-.|.+....-+..--.++|
T Consensus 6 kv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 6 KVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888887765555544444443
No 269
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=33.46 E-value=1.9e+02 Score=23.27 Aligned_cols=67 Identities=9% Similarity=0.224 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQ----ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~----~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
++.+++.+|+.+++- |+-|+--.==++-++... ..+.-...|+.+++.|..+++++.+-++.++..+
T Consensus 39 Y~~~dl~~l~~I~~l-r~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 39 YTQQHLNELTLLRQA-RQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp CCHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHH-HHCCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998874 666654332111111110 0112233455666666666666555555555444
No 270
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=33.40 E-value=54 Score=22.29 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd 305 (328)
...+++|+.|+++++.|..++.
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHHHH
Confidence 3455566666666666555543
No 271
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=33.25 E-value=40 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.|+..|+.+|..|...+.+|..|...||.-+
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3566677777777777777777777777643
No 272
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=33.23 E-value=51 Score=26.55 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.8
Q ss_pred hchHHHHHhHHHHHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 260 KNRGYAQNCRSKRLH-QRQELEVTNK------HLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 260 KNRGYAQnCRkKRLq-q~~~LE~E~~------~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
|=+|+|.+|-..+|. -...||...+ .++.++..|..|+..+.++-..|
T Consensus 67 kLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~~~l~~~l~~L~del~~v~~~~~~~ 121 (123)
T 3iqt_A 67 KLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKI 121 (123)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999984 4566776544 35666777777776666665443
No 273
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=33.22 E-value=95 Score=21.00 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|-.++..+..|...+|.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45666666666666666666666554
No 274
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=32.87 E-value=88 Score=25.01 Aligned_cols=16 Identities=13% Similarity=-0.062 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQ 291 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele 291 (328)
+.+|++++....++++
T Consensus 24 i~el~~ei~ke~~~re 39 (98)
T 2ke4_A 24 LEERSRELQKEVDQRE 39 (98)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555444444433
No 275
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.81 E-value=41 Score=32.86 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
..|+.+++++..|+..+.+++...+.++..+.
T Consensus 42 ~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~ 73 (434)
T 4b4t_M 42 RIFRSELQRLSHENNVMLEKIKDNKEKIKNNR 73 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444444444444444454444443
No 276
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.77 E-value=1.8e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.454 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
+.|..+..|..++++|+.++..++
T Consensus 49 eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666544
No 277
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.72 E-value=1.1e+02 Score=24.38 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
..|+.++..|+.++.+|..+++++.
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543
No 278
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.69 E-value=66 Score=25.59 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHHHHHhh-hhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 242 HGYPRDQIAKLKAKRRT-LKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 242 ~GLSkeEv~~LKQrRRT-LKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
.+.|..--..|=.+||. |. .-|++...|-.++..|+.++..|+.++.+++.
T Consensus 23 e~Pse~YWk~lAE~RR~AL~----------eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 23 ENPSSQYWKEVAEKRRKALY----------EALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777776 43 23677777777788888888888888777654
No 279
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.64 E-value=83 Score=26.83 Aligned_cols=32 Identities=13% Similarity=0.368 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
|+.|.+....|+.+..+|.+.+-.+++.+.+.
T Consensus 97 Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ 128 (151)
T 1yke_B 97 LQKKLVEVEDEKIEAIKKKEKLLRHVDSLIED 128 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555554443
No 280
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=32.06 E-value=86 Score=24.45 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEER----NHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rEr----d~yK~K~e~L~~~ 317 (328)
.||..+..|+.-++.|+-..++|.-|- ..+|+|+..|...
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666665555555554443 3566777766654
No 281
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=31.93 E-value=64 Score=26.13 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
.+..+++.|+.+++.+..|+..+
T Consensus 93 ~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 93 KEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555444
No 282
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=31.88 E-value=1.1e+02 Score=27.63 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
-++++.|..++..|+.+......++++-...+...+.-|+.|.+-
T Consensus 40 ~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl 84 (190)
T 4emc_A 40 ATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNV 84 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSE
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCc
Confidence 444444444555555555555555555556666666666666654
No 283
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=31.75 E-value=29 Score=31.57 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
++++..|..|++.+++++++|+.++.+..-|.---+..+..||.
T Consensus 154 ~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~ 197 (250)
T 2ve7_C 154 ADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYH 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 34444444444555555555555544444443333344444444
No 284
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=31.45 E-value=1.4e+02 Score=29.54 Aligned_cols=11 Identities=36% Similarity=0.625 Sum_probs=5.3
Q ss_pred CCCHHHHHHHH
Q psy4245 243 GYPRDQIAKLK 253 (328)
Q Consensus 243 GLSkeEv~~LK 253 (328)
|||++||.++.
T Consensus 506 ~ls~~ei~~~~ 516 (605)
T 4b9q_A 506 GLNEDEIQKMV 516 (605)
T ss_dssp SCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 45555554443
No 285
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.42 E-value=41 Score=31.39 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.+...|+.|...|+.+++++.+.+.+..++++.-...|+.+.+
T Consensus 192 ~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~~~LG 234 (315)
T 2ve7_A 192 AKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLG 234 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHcc
Confidence 4455566666666655555555444433333433444444433
No 286
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=31.38 E-value=1.4e+02 Score=23.44 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhc
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSE--------IKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E--------~~rl~rErd~yK~K~e~L~~~ 317 (328)
+=...+-++++.+. +......--.|.+.+.+.|..+.+...-|++|.-| +..+...+..||+.++.|.+.
T Consensus 23 df~~l~~~i~~kl~-~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~e 100 (102)
T 2qyw_A 23 IFRGLLEDLQGVPE-RLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555554 21111111223333444444444444444444444 455666777777777777653
No 287
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.12 E-value=62 Score=31.49 Aligned_cols=44 Identities=9% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.+.++|.+...+...+.+|..+...+.++...++..++.|+..
T Consensus 25 ~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~ 68 (405)
T 4b4t_J 25 QKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEP 68 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44556666666677777777777777777777777777766543
No 288
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=30.97 E-value=41 Score=23.60 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
.+..||+.+..|+.++..|+..+
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777666543
No 289
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.68 E-value=1.5e+02 Score=21.42 Aligned_cols=35 Identities=6% Similarity=0.126 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
..|-.++.+|..++..|+.++...+.|-..--+|+
T Consensus 14 ~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555555555554444444443333
No 290
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=30.65 E-value=1.1e+02 Score=20.81 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|-.++..+..|...+|.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45666666666666666666666554
No 291
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=30.49 E-value=1.5e+02 Score=21.22 Aligned_cols=13 Identities=0% Similarity=-0.020 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy4245 303 ERNHYKKQYEIVM 315 (328)
Q Consensus 303 Erd~yK~K~e~L~ 315 (328)
-+..+++|...|.
T Consensus 48 ~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 48 KIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444454444443
No 292
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.48 E-value=96 Score=20.99 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|-.++..+..|...+|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45666666666666666666555543
No 293
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=30.46 E-value=62 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=27.7
Q ss_pred CCCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhhhch
Q psy4245 222 DLISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNR 262 (328)
Q Consensus 222 i~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTLKNR 262 (328)
..||.+++..|-.+=|++ .++|+..|+..||.++..
T Consensus 43 ~~~t~~e~~~lI~~yl~R-----~d~ELeql~~~rR~gRp~ 78 (144)
T 2kkm_A 43 PIFDHAHTREFIQSFIER-----DDTELDELKKKRRSNRPP 78 (144)
T ss_dssp CCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHGGGTCCC
T ss_pred CCCCHHHHHHHHHHHHhc-----CcHHHHHHHHhhCCCCCC
Confidence 368999998886665555 468999999999977543
No 294
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=30.31 E-value=1.6e+02 Score=23.92 Aligned_cols=42 Identities=10% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSE--------IKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E--------~~rl~rErd~yK~K~e~L~~~ 317 (328)
+...|.++..+..|++.|-.. ++.-.+++..++.|.+.|...
T Consensus 42 R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~q 91 (97)
T 2eqb_B 42 RTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665443 345678888888888888754
No 295
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.22 E-value=70 Score=26.21 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 283 NKHLQQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 283 ~~~L~~Ele~Lk~E~~rl~rE 303 (328)
+..|..++..|++|++++..+
T Consensus 34 v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 34 VERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 296
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.22 E-value=1.5e+02 Score=21.29 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
.+..||.+..+++.+++...+|-.
T Consensus 8 ~i~~le~el~~~r~e~~~q~~eYq 31 (59)
T 1gk6_A 8 KVEELLSKNYHLENEVARLKKLVG 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555555544
No 297
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=30.05 E-value=27 Score=26.88 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 270 SKRLHQRQELEVTNKHLQQQLQKMKSE 296 (328)
Q Consensus 270 kKRLqq~~~LE~E~~~L~~Ele~Lk~E 296 (328)
.+|+++..-||.-.++|+.++..++.+
T Consensus 42 ~~r~DEV~tLe~NLrEL~~ei~~~q~~ 68 (69)
T 1z0k_B 42 AGRMDEVRTLQENLRQLQDEYDQQQTE 68 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456899999999999999998887644
No 298
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=29.80 E-value=2e+02 Score=22.57 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 280 EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
..-+..|-.+++.|-.|.+-+..|+..+++-..++
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555555544444443
No 299
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.76 E-value=92 Score=21.20 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|-.++..+..|...+|.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45666666666666666666666554
No 300
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=29.55 E-value=2.4e+02 Score=23.56 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH--HHHHHhccccCc
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIK----QIVEERNHYKKQ--YEIVMRNKDRSE 322 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~----rl~rErd~yK~K--~e~L~~~~f~~~ 322 (328)
||++=+.++|.|+.++++.-+.+-.|++ +-.++++....+ .+++.-..|+++
T Consensus 58 kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~kV~mNk~LAe~Fr~K 115 (115)
T 3vem_A 58 KKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNLVIMNKLLANAFLSK 115 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677777777777777666555555444 233444443333 344555566653
No 301
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=29.54 E-value=98 Score=26.26 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=28.2
Q ss_pred hhhchHHHHHhHHHHHHH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 258 TLKNRGYAQNCRSKRLHQ--RQELEVTNKHLQQ-------QLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 258 TLKNRGYAQnCRkKRLqq--~~~LE~E~~~L~~-------Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
-=|-|.-|..|---.++. ...|..-.++|.. |.=.|...+.+-..|++.++.++..|.+
T Consensus 40 eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 40 GEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 344455566663333322 2333333333333 3333333444555677777777777753
No 302
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.45 E-value=38 Score=25.43 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHH
Q psy4245 268 CRSKRLHQRQELEVTN 283 (328)
Q Consensus 268 CRkKRLqq~~~LE~E~ 283 (328)
|...|+....-|...+
T Consensus 41 ~~~~k~sK~~iL~~Ai 56 (80)
T 1hlo_A 41 LQGEKASRAQILDKAT 56 (80)
T ss_dssp GTTSCCCHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHH
Confidence 4444555555555443
No 303
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=29.39 E-value=95 Score=37.93 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=9.6
Q ss_pred ccCCCchhHHHHHHhhhcccCC
Q psy4245 12 VDSEDPQLADEYVQEFVLDHFE 33 (328)
Q Consensus 12 ~~~edp~ladeYvqeFvL~Hld 33 (328)
++.+|-..-++.+.+-...|+.
T Consensus 1555 v~~~Dr~~f~~~l~~~~~~~F~ 1576 (3245)
T 3vkg_A 1555 VETEEKEWTDKKIDEVALKHFP 1576 (3245)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444443
No 304
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.23 E-value=1.6e+02 Score=21.06 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhhh
Q psy4245 247 DQIAKLKAKRRTLK 260 (328)
Q Consensus 247 eEv~~LKQrRRTLK 260 (328)
.|+.-|...--|||
T Consensus 10 nevaslenenetlk 23 (49)
T 3he5_A 10 NEVASLENENETLK 23 (49)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHH
Confidence 35555555555555
No 305
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=29.21 E-value=77 Score=22.90 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
+...+..|+.++.+++.+.++..+|-+
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq 31 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVG 31 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555533
No 306
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=29.17 E-value=76 Score=24.46 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=29.6
Q ss_pred CChhHhhcccHHHHHHhc-CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 224 ISDDLLMCLSVRELNKKL-HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 224 fSDEeLVsmSVrELNrlL-~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
|++++|..+.. +..+- .|+|-++|..+-+ +. | .+....|+.....|+++++.|+..++.+..
T Consensus 40 Y~~~dl~~l~~--I~~lr~~G~sl~~I~~~l~------~~-----~----~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~ 102 (108)
T 2vz4_A 40 YSDADLDRLQQ--ILFYRELGFPLDEVAALLD------DP-----A----ADPRAHLRRQHELLSARIGKLQKMAAAVEQ 102 (108)
T ss_dssp BCHHHHHHHHH--HHHHHHTTCCHHHHHHHHT------C--------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHH--HHHHHHCCCCHHHHHHHHh------CC-----c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666554421 11111 4788777766543 11 1 012334455555555555555555555544
Q ss_pred H
Q psy4245 303 E 303 (328)
Q Consensus 303 E 303 (328)
-
T Consensus 103 ~ 103 (108)
T 2vz4_A 103 A 103 (108)
T ss_dssp H
T ss_pred H
Confidence 3
No 307
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=29.10 E-value=2e+02 Score=22.15 Aligned_cols=16 Identities=13% Similarity=0.148 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4245 291 QKMKSEIKQIVEERNH 306 (328)
Q Consensus 291 e~Lk~E~~rl~rErd~ 306 (328)
++|...+..+...+..
T Consensus 66 ~~L~~~K~eLE~~l~e 81 (89)
T 3bas_A 66 EELLSKNYHLENEVAR 81 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 308
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=29.09 E-value=2.2e+02 Score=24.60 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
....++.++.....++++.++.-....+|.+..+.+++..
T Consensus 124 ~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~ 163 (305)
T 2efl_A 124 DGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 163 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555555555555555555555554444
No 309
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=29.03 E-value=1.6e+02 Score=21.22 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEER 304 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rEr 304 (328)
.||.+-..|+.-+..|+.|++++..|.
T Consensus 21 qlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666665553
No 310
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.00 E-value=1.5e+02 Score=24.03 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKM 293 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~L 293 (328)
.+||+|++.|..++..|
T Consensus 50 ~eL~~EI~~L~~eI~~L 66 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQL 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 311
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.92 E-value=41 Score=32.85 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=0.4
Q ss_pred HHHHHHhhhhchH
Q psy4245 251 KLKAKRRTLKNRG 263 (328)
Q Consensus 251 ~LKQrRRTLKNRG 263 (328)
+|+.+.+.|.|..
T Consensus 29 ~l~~r~~~le~e~ 41 (434)
T 4b4t_M 29 ELQTRAKLLDNEI 41 (434)
T ss_dssp ------------C
T ss_pred HHHHHHHHHHHHH
Confidence 3455555566544
No 312
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.91 E-value=57 Score=31.82 Aligned_cols=37 Identities=8% Similarity=0.172 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.+..+||.+.+.++.++..|++++.+ .+..++.|+.
T Consensus 64 l~~~~~~e~~~~~~~~~~~~l~~~~~~-------~~~~~~~l~~ 100 (437)
T 4b4t_L 64 LLEHRRYDDQLKQRRQNIRDLEKLYDK-------TENDIKALQS 100 (437)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhcc
Confidence 444455666666666555555555544 4444555554
No 313
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.84 E-value=1.5e+02 Score=24.38 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=38.1
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 235 RELNKKL-HGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 235 rELNrlL-~GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
+..+++| +.|+..+-.. +..-.-|..|-.-=+.=...|+.|+.+-+.+.. +++++.-|+..++++++.
T Consensus 17 rNvT~lLq~qLT~Aq~~l-------~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~----~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 17 RNTTHLLQRQLTRTQDSL-------LQAETQANSCNLTVVTLQESLEKKVSQALEQQA----RIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 4556666 4455555222 223456778887777778888888877432211 233444444444445444
Q ss_pred H
Q psy4245 314 V 314 (328)
Q Consensus 314 L 314 (328)
+
T Consensus 86 a 86 (99)
T 3ni0_A 86 L 86 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 314
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.77 E-value=2.9e+02 Score=28.01 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=5.5
Q ss_pred HHHhccccCcc
Q psy4245 313 IVMRNKDRSEA 323 (328)
Q Consensus 313 ~L~~~~f~~~~ 323 (328)
.|.+.+|.++.
T Consensus 559 ~~~~~g~~~~~ 569 (592)
T 1f5n_A 559 QLLKEGFQKES 569 (592)
T ss_dssp HHHHHTCHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555443
No 315
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=28.68 E-value=1.9e+02 Score=35.45 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
.+||+++..|+++.+++.+|++++..|.+..+.|++
T Consensus 2038 ~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2038 TALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 316
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.41 E-value=3.9e+02 Score=26.73 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhhh
Q psy4245 248 QIAKLKAKRRTLK 260 (328)
Q Consensus 248 Ev~~LKQrRRTLK 260 (328)
++..||++=..+.
T Consensus 101 ~LqeLe~~l~~ls 113 (464)
T 1m1j_B 101 VLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 317
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.38 E-value=1.6e+02 Score=24.33 Aligned_cols=33 Identities=3% Similarity=0.019 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
+.+|+.|+.....++.+..+|.+.+...++.+-
T Consensus 94 i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l 126 (132)
T 1ykh_B 94 IDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 126 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666665543
No 318
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=28.32 E-value=4e+02 Score=25.49 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=11.2
Q ss_pred CCChhHhhcccHHHHHHhc
Q psy4245 223 LISDDLLMCLSVRELNKKL 241 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL 241 (328)
.+..+.+.-++-..-+..|
T Consensus 152 ~~q~~~~~l~~~~~rr~~L 170 (517)
T 4ad8_A 152 HWQHSAVSLLSPANQRGLL 170 (517)
T ss_dssp ESGGGGGTTTSHHHHHHHH
T ss_pred eCCchHHhcCCHHHHHHHH
Confidence 3455556666666666666
No 319
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=28.27 E-value=1.9e+02 Score=22.94 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
.|+..|..+++.+..|++.++.|...++.-.+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777778888777777777777777655443
No 320
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=28.15 E-value=1.3e+02 Score=25.33 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHhhhhc
Q psy4245 244 YPRDQIAKLKAKRRTLKN 261 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKN 261 (328)
||++|...||+++...+.
T Consensus 46 LTdeQkqqir~L~~~~r~ 63 (145)
T 3itf_A 46 LTEHQRQQMRDLMQQARH 63 (145)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 889999999999876553
No 321
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.13 E-value=91 Score=23.62 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIK 298 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~ 298 (328)
++-+..|+.++..|..+.+.|+.++.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544444444444444444433
No 322
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=28.11 E-value=1.7e+02 Score=29.48 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=47.9
Q ss_pred ChhHhhcccHHHHHHhcCCC---C---HHHHHHHHH----HHhhhhchHHHHHhHHHHHHHHHHHHHH---------HHH
Q psy4245 225 SDDLLMCLSVRELNKKLHGY---P---RDQIAKLKA----KRRTLKNRGYAQNCRSKRLHQRQELEVT---------NKH 285 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL~GL---S---keEv~~LKQ----rRRTLKNRGYAQnCRkKRLqq~~~LE~E---------~~~ 285 (328)
.-+.=|.-.+.+|...|..+ | .+-|..||+ +-+..+|..-|-+=-++-|++++..|+| +..
T Consensus 88 kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~ 167 (461)
T 3ghg_B 88 QQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRV 167 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 34455677778888877433 2 223333333 2334555555555556667777666663 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
|+..++.++.++..|...+..++.+
T Consensus 168 l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 168 LRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555566666666666555555555
No 323
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=27.71 E-value=2.3e+02 Score=22.46 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 277 ~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++|=.|+..|+-.++.|..|+.+..+.+..-|..+..|+
T Consensus 22 E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq 60 (81)
T 3qh9_A 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 324
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=27.61 E-value=11 Score=30.67 Aligned_cols=18 Identities=28% Similarity=0.525 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQ 299 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~r 299 (328)
++..|+.++..|..|+++
T Consensus 97 ~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 97 KNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 325
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.49 E-value=1e+02 Score=24.86 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKS 295 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~ 295 (328)
++.+..|..++..|+.++++++.
T Consensus 15 ~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 15 LEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555554444
No 326
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.43 E-value=1.8e+02 Score=26.63 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+|.....+--.|+..|..+++.|..|++.++.|.+.+|.-.+.++
T Consensus 105 ~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 105 KRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444458888999999999999999999888887766554
No 327
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=27.39 E-value=60 Score=29.22 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKS 295 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~ 295 (328)
|+++.+|+.++.+|++|-++|.+
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655554444444444443
No 328
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=27.25 E-value=2.6e+02 Score=22.87 Aligned_cols=67 Identities=10% Similarity=0.239 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHH---HHHHH-----------H--------HHHHHHHHHHHHHHHHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELE---VTNKH-----------L--------QQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE---~E~~~-----------L--------~~Ele~Lk~E~~rl~rErd 305 (328)
.+..|.+++..|.+ +-.||..||++...|. .+... | ..+++.|.++-+.+..++.
T Consensus 84 ~l~~L~~~w~~L~~---~w~~r~~~L~~~l~l~~F~~d~~~~~~Wl~~~e~~L~~~~~g~sl~~ve~LlkkH~~fe~~l~ 160 (185)
T 3lbx_B 84 KLQQVMSRRKEMNE---KWEARWERLRMLLEVCQFSRDASVAEAWLIAQEPYLASGDFGHTVDSVEKLIKRHEAFEKSTA 160 (185)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 44556666666664 3558888888775544 22222 1 2356777788888888888
Q ss_pred HHHHHHHHHHhc
Q psy4245 306 HYKKQYEIVMRN 317 (328)
Q Consensus 306 ~yK~K~e~L~~~ 317 (328)
....++..|.+-
T Consensus 161 ~~~e~i~~L~~~ 172 (185)
T 3lbx_B 161 SWAERFAALEKP 172 (185)
T ss_dssp HTHHHHHHHHSC
T ss_pred HhHHHHHHHhhh
Confidence 888888888764
No 329
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.23 E-value=3.3e+02 Score=24.19 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~y 307 (328)
+..|++++..|+...+.|+..+..+.+.-|.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33344444444444444444443333333333
No 330
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.95 E-value=1.7e+02 Score=20.82 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 285 HLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 285 ~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.|+.++..|..|+..|..+++.+++
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 331
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=26.78 E-value=1.2e+02 Score=26.67 Aligned_cols=13 Identities=8% Similarity=0.302 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q psy4245 298 KQIVEERNHYKKQ 310 (328)
Q Consensus 298 ~rl~rErd~yK~K 310 (328)
.|+.-|.+.||.+
T Consensus 63 lR~~Ae~eN~rkR 75 (197)
T 1dkg_A 63 LRVKAEMENLRRR 75 (197)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 332
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.67 E-value=1.1e+02 Score=29.08 Aligned_cols=31 Identities=3% Similarity=0.080 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
.++..|+.+++.++.++.++...+..++.+|
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444455444
No 333
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=26.50 E-value=1.3e+02 Score=20.08 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhchHHHH
Q psy4245 248 QIAKLKAKRRTLKNRGYAQ 266 (328)
Q Consensus 248 Ev~~LKQrRRTLKNRGYAQ 266 (328)
|+..||.+=..||-|.||.
T Consensus 2 evqalkkrvqalkarnyaa 20 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAA 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHH
Confidence 4555666666677777665
No 334
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.39 E-value=1.2e+02 Score=22.51 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4245 290 LQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 290 le~Lk~E~~rl~rErd~yK 308 (328)
|..|+.++.++..|++.++
T Consensus 59 I~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 59 IQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 335
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=26.39 E-value=1.1e+02 Score=25.40 Aligned_cols=29 Identities=3% Similarity=0.022 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.++.|.++.+.+..++.....+++.|...
T Consensus 153 ~ve~ll~~h~~f~~~l~~~~~~v~~l~~~ 181 (218)
T 3fb2_A 153 SVEALIKKHEDFDKAINVQEEKIAALQAF 181 (218)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555566666666666666666543
No 336
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.36 E-value=1.7e+02 Score=24.84 Aligned_cols=34 Identities=3% Similarity=0.034 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
+.+||.|+.....++.+..+|.+.+...++.+-.
T Consensus 94 i~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 94 IDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777776666666655443
No 337
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=26.34 E-value=1.2e+02 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 282 TNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 282 E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
++.+|..-+..|+.|.+.-.+-+..++.|++
T Consensus 26 Qk~eL~~~l~~l~~e~~~R~~~i~el~akid 56 (101)
T 1d7m_A 26 QKDQLNSLLASLESEGAEREKRLRELEAKLD 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 338
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=26.23 E-value=53 Score=33.36 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccc
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAEH 325 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~~h 325 (328)
++..+|+.++..|+.-+..=.+-++-+..|+.++|.+|..=++...--|-.|
T Consensus 446 ~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~~g~~RrT~i~~~~~~ 497 (500)
T 3lpx_A 446 SEYKALLDLIAELMHILATPARLMEVICEELVAIRDEFGDERRTEITLEHHH 497 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCSEEC-----
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCceeeccccc
Confidence 3445555555566665655566667788888888888876666555444433
No 339
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.19 E-value=1.4e+02 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKK 309 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~ 309 (328)
.+|+..++.|..++..+..|...+|.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555555555555443
No 340
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=26.15 E-value=4.2e+02 Score=25.91 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=42.1
Q ss_pred HHHHHhhhhch----HHHHHhHHHHHHHHHHH----------HHHHHH----HHHH-----------HHHHHHHHHHHHH
Q psy4245 252 LKAKRRTLKNR----GYAQNCRSKRLHQRQEL----------EVTNKH----LQQQ-----------LQKMKSEIKQIVE 302 (328)
Q Consensus 252 LKQrRRTLKNR----GYAQnCRkKRLqq~~~L----------E~E~~~----L~~E-----------le~Lk~E~~rl~r 302 (328)
|+.+...|+++ ..+..||..+|++...+ |.=... |..+ .+.|.++...+.+
T Consensus 170 I~~r~~~L~~~W~~L~~l~~~R~~~L~~a~~~~QF~~Da~EaesWL~eke~~l~s~y~~D~g~d~~~~e~LLkkh~~le~ 249 (450)
T 3r6n_A 170 IEAYMDTLQTQWSWILQITKCIDVHLKENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKERE 249 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCcCCCCHHHHHHHHHHHHHHHH
Confidence 34444444443 34568999998875332 222211 2222 4578888888999
Q ss_pred HHHHHHHHHHHHHhc
Q psy4245 303 ERNHYKKQYEIVMRN 317 (328)
Q Consensus 303 Erd~yK~K~e~L~~~ 317 (328)
+++.|+.++..|...
T Consensus 250 ~l~~~~~~I~~L~~q 264 (450)
T 3r6n_A 250 KILEYKRQVQNLVNK 264 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999754
No 341
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=26.13 E-value=1.8e+02 Score=22.28 Aligned_cols=34 Identities=3% Similarity=0.278 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
..|...++.+..+++.+...++.+..+++.|...
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777777766543
No 342
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=26.05 E-value=1.5e+02 Score=25.82 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=5.6
Q ss_pred cccHHHHHHhc
Q psy4245 231 CLSVRELNKKL 241 (328)
Q Consensus 231 smSVrELNrlL 241 (328)
.||-.|+++++
T Consensus 115 ~Ls~eei~~~~ 125 (227)
T 1u00_A 115 GLTDSEIASMI 125 (227)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 35555555544
No 343
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.02 E-value=22 Score=25.32 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMK 294 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk 294 (328)
..+..||.++..|+..++.|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 556677777777777666554
No 344
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=26.02 E-value=73 Score=24.13 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 289 QLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 289 Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
++..|++++-.++-|+..+-.++..
T Consensus 45 ~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 45 EVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5666666666666666555554443
No 345
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=26.00 E-value=2.6e+02 Score=22.58 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=36.9
Q ss_pred HHHHHHHhhhhchHHHHHhHHHHHHHHHHH---HHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHH
Q psy4245 250 AKLKAKRRTLKNRGYAQNCRSKRLHQRQEL---EVTNKHL-------------------QQQLQKMKSEIKQIVEERNHY 307 (328)
Q Consensus 250 ~~LKQrRRTLKNRGYAQnCRkKRLqq~~~L---E~E~~~L-------------------~~Ele~Lk~E~~rl~rErd~y 307 (328)
..|..+-..|++ ...||.+||++...+ ..+...+ ...++.|.++.+.+..++..+
T Consensus 82 ~~l~~~w~~L~~---~~~~R~~~Le~~~~~~~f~~~~~e~~~Wl~~~e~~l~~~~~g~~~~~v~~ll~~h~~~~~el~~~ 158 (213)
T 1cun_A 82 AQFVDHWKELKQ---LAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVH 158 (213)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444554 456888888875433 2222221 233455666667777777777
Q ss_pred HHHHHHHHhc
Q psy4245 308 KKQYEIVMRN 317 (328)
Q Consensus 308 K~K~e~L~~~ 317 (328)
+.+++.|...
T Consensus 159 ~~~i~~l~~~ 168 (213)
T 1cun_A 159 KDRVNDVCAN 168 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 346
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.87 E-value=1.5e+02 Score=23.08 Aligned_cols=44 Identities=9% Similarity=0.120 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc
Q psy4245 280 EVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEA 323 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~~f~~~~ 323 (328)
-..++-++..|..++.|...+.-.+..+..++++|...++..++
T Consensus 7 ~nsVk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~~ag~ip~A 50 (74)
T 1avy_A 7 TNKIKAIETDIASVRQEVNTAKGNISSLQGDVQALQEAGYIPEA 50 (74)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cchhcccccchhhhheeeccccchhhhhhhhhHHHHhcCCCCCC
Confidence 34456677777777888888888888888888888877766554
No 347
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=25.67 E-value=2.8e+02 Score=24.71 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 287 QQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 287 ~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.+++..+.+++.+..++...+..++.+.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~ 149 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAE 149 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 348
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.54 E-value=2e+02 Score=27.40 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMK-----SEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk-----~E~~rl~rErd~yK~K~e~L~ 315 (328)
+.+||.++..|..+++... .+.+++..+.+.++.+++.+.
T Consensus 396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~ 440 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTK 440 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554443222 224455566666666666654
No 349
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.42 E-value=78 Score=26.06 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQI---VEERNHYKKQYEIVMR 316 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl---~rErd~yK~K~e~L~~ 316 (328)
++..|.....+|+.+++.|...+..+ ...+..++.-++.|..
T Consensus 10 ~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~ 54 (151)
T 2zdi_C 10 ELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKK 54 (151)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666667777777777777777 7767777777776644
No 350
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.35 E-value=1.9e+02 Score=24.64 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 292 KMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 292 ~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
..+..+++.....++||.|++.+.
T Consensus 111 ~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 111 NQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666776666654
No 351
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.32 E-value=63 Score=23.21 Aligned_cols=12 Identities=25% Similarity=0.756 Sum_probs=5.6
Q ss_pred hcCCCCHHHHHH
Q psy4245 240 KLHGYPRDQIAK 251 (328)
Q Consensus 240 lL~GLSkeEv~~ 251 (328)
.++|...+||..
T Consensus 16 ~~rGY~~~EVD~ 27 (57)
T 2wuj_A 16 SFRGYDEDEVNE 27 (57)
T ss_dssp ETTEEEHHHHHH
T ss_pred CCCCcCHHHHHH
Confidence 344555555543
No 352
>1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I
Probab=25.17 E-value=26 Score=29.73 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=30.4
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 262 RGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 262 RGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
.|||+|.=..+--....=+....+++.+...+..+.++...+-..++.+++.+
T Consensus 22 ~GYaRNfLiP~glA~~AT~~n~~~~e~~~~~~~~~~~~~~~~A~~~a~~L~~~ 74 (146)
T 1nkw_F 22 DGYARNWLIPQGLAVSATRTNMKTLEAQLRSIEKRQAQEKAVAEDLASRLNGV 74 (146)
T ss_pred CcceehhcccCCceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 47777765555333333334444555555555555556666666677776654
No 353
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.91 E-value=2e+02 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 284 KHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 284 ~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
..|...++.+..+++.+...++.+..+++.|..
T Consensus 68 ~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 337777777777777777777777777777654
No 354
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=24.57 E-value=1.3e+02 Score=23.87 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHH-HHHHHHHH
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRL-HQRQELEV 281 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRL-qq~~~LE~ 281 (328)
.....+++.--|+| |.|.+|-..++ +....||.
T Consensus 58 ~D~~~l~~~aHrLK--Gaa~~lG~~~L~~lc~~LE~ 91 (116)
T 1sr2_A 58 SDFAALAQTAHRLK--GVFAMLNLVPGKQLCETLEH 91 (116)
T ss_dssp TCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHH
Confidence 34455666666665 99999999888 45566665
No 355
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=24.33 E-value=3.4e+02 Score=24.95 Aligned_cols=18 Identities=0% Similarity=0.135 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhhhchHH
Q psy4245 247 DQIAKLKAKRRTLKNRGY 264 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGY 264 (328)
+.|.-+|++|.++.++.+
T Consensus 104 ~svqp~R~~R~~l~~~I~ 121 (234)
T 3plt_A 104 ASVQPSRDRKEKITDEIA 121 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 344445555555554443
No 356
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.26 E-value=3e+02 Score=22.64 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.-.....|+.++..|+.++..+..-+..+.++-+.|.+
T Consensus 32 e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 32 QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 334445556666666666666666666666665555544
No 357
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.04 E-value=2.3e+02 Score=21.15 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERN---HYKKQYEIVMR 316 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd---~yK~K~e~L~~ 316 (328)
.|=+.+-.|..|++.|++|+.++.+-.+ .-..++|.+.+
T Consensus 7 SlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 7 SLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777776665443 33445555543
No 358
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=24.01 E-value=2.3e+02 Score=25.55 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
.|+..|..+++....|++.++++++.+|
T Consensus 27 ~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 27 NENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 359
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=23.98 E-value=48 Score=29.94 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVE 302 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~r 302 (328)
+.....|..|+.+|++|+.+|+.++.++..
T Consensus 18 ~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~ 47 (255)
T 2j5u_A 18 VVDLKNTYTENQHLKERLEELAQLESEVAD 47 (255)
T ss_dssp --------CTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777788777777766655443
No 360
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.86 E-value=1.7e+02 Score=20.80 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4245 280 EVTNKHLQQQLQKMKSE 296 (328)
Q Consensus 280 E~E~~~L~~Ele~Lk~E 296 (328)
|..+..|+.+++.|..+
T Consensus 11 ERsV~KLek~ID~LEde 27 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDE 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 361
>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s
Probab=23.85 E-value=1.7 Score=38.10 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=8.1
Q ss_pred CCChhHhhcccHHHHHHhc---------CCCCHHHHHHHHHHHh
Q psy4245 223 LISDDLLMCLSVRELNKKL---------HGYPRDQIAKLKAKRR 257 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL---------~GLSkeEv~~LKQrRR 257 (328)
+++.|||.+||.+||-+++ +||+.++..+||..|.
T Consensus 28 G~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrk 71 (154)
T 3iz6_R 28 GVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRK 71 (154)
T ss_dssp ------------------------------CCCCSCCCCSSCCS
T ss_pred cCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHH
Confidence 3578999999999988776 3666666655555544
No 362
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=23.73 E-value=1.5e+02 Score=23.88 Aligned_cols=26 Identities=8% Similarity=0.308 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIV 301 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~ 301 (328)
+..|+.+=..|...+..++..+..+.
T Consensus 15 l~~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 15 LRQLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333334444444444444333
No 363
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=23.53 E-value=3e+02 Score=22.48 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKM 293 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~L 293 (328)
++.+|+.|+..|..+++.+
T Consensus 68 ~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 68 RIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444443
No 364
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=23.30 E-value=86 Score=23.23 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=28.7
Q ss_pred CCChhHhhcccHHHHHHhcCCCCHHHHHHHHHHHh
Q psy4245 223 LISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRR 257 (328)
Q Consensus 223 ~fSDEeLVsmSVrELNrlL~GLSkeEv~~LKQrRR 257 (328)
..|.|.|...+++||-.. .|+|++....|...-|
T Consensus 28 i~TvedlA~~~~~eL~~i-~gise~kA~~ii~aAr 61 (70)
T 1wcn_A 28 VCTLEDLAEQGIDDLADI-EGLTDEKAGALIMAAR 61 (70)
T ss_dssp CCSHHHHHTSCHHHHHTS-SSCCHHHHHHHHHHHH
T ss_pred CCcHHHHHcCCHHHHHHc-cCCCHHHHHHHHHHHH
Confidence 358999999999998774 4999999999987655
No 365
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.29 E-value=37 Score=24.86 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.7
Q ss_pred hHhhcccHHHHHHhcCCCCHHHHHHHHHHHhhh
Q psy4245 227 DLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTL 259 (328)
Q Consensus 227 EeLVsmSVrELNrlL~GLSkeEv~~LKQrRRTL 259 (328)
+-|-++|+.||.+.|.+|..+=-.+|...|+|.
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY 37 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKY 37 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 668889999999999887777666666666654
No 366
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=23.23 E-value=2e+02 Score=23.07 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
+.+|-.++..+-.+|-.|-.+...+.+++..||..
T Consensus 14 L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~ 48 (114)
T 3rmi_A 14 LAYLRQSIDNFDITLIHILAERFRCTQAIGRLKAR 48 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666666653
No 367
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=22.95 E-value=1.9e+02 Score=22.21 Aligned_cols=36 Identities=6% Similarity=0.055 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQY 311 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~ 311 (328)
+.+|-.++..+-.++-.|-.|...+.+++..||...
T Consensus 14 L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 14 IDTLREEIDRLDAEILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 444555566666777777777777777777777653
No 368
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=22.93 E-value=2e+02 Score=21.23 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhccccCccc
Q psy4245 278 ELEVTNKHLQQQLQKMKSE-------IKQIVEERNHYKKQYEIVMRNKDRSEAE 324 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E-------~~rl~rErd~yK~K~e~L~~~~f~~~~~ 324 (328)
.|..++..++.++..|..+ .-++++|+|.+-.+|..+....-.-|--
T Consensus 5 ~L~~~IE~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~~~~~~~~ 58 (62)
T 2bzb_A 5 QLKNKIENKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDKVHKLEHH 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCCCCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcccchhhhc
Confidence 3444444555555555443 4568889999988888776554444433
No 369
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.77 E-value=2e+02 Score=27.66 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.+|...+.+|+.+++....+...+.++++.+|-.+-.|++.
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~ 255 (373)
T 3hhm_B 214 ISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKT 255 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 345666777788888888888888888899888888888774
No 370
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.77 E-value=5.3e+02 Score=26.25 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=43.1
Q ss_pred ChhHhhcccHHHHHHhcC---CCCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 225 SDDLLMCLSVRELNKKLH---GYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQR-QELEVTNKHLQQQLQKMKSEIKQI 300 (328)
Q Consensus 225 SDEeLVsmSVrELNrlL~---GLSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~-~~LE~E~~~L~~Ele~Lk~E~~rl 300 (328)
--|+=+.-.+++|+..|. ..+.+=-..++..--.+|.|..-.+=--.++.|. ++||.....|++.++.--..+.-|
T Consensus 58 kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvL 137 (491)
T 1m1j_A 58 DTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKAL 137 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888888772 3455555556666666665554443333333222 344444444443333322333333
Q ss_pred HHHHHHHHHHHHHH
Q psy4245 301 VEERNHYKKQYEIV 314 (328)
Q Consensus 301 ~rErd~yK~K~e~L 314 (328)
+.-++....++++|
T Consensus 138 q~~l~~q~skIQRL 151 (491)
T 1m1j_A 138 QNSIQEQVVEMKRL 151 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 371
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=22.28 E-value=28 Score=32.53 Aligned_cols=16 Identities=19% Similarity=0.198 Sum_probs=11.2
Q ss_pred hhHhhcccHHHHHHhc
Q psy4245 226 DDLLMCLSVRELNKKL 241 (328)
Q Consensus 226 DEeLVsmSVrELNrlL 241 (328)
+++|++++-.|.-+.|
T Consensus 154 ~~~l~~~~p~eRr~~l 169 (430)
T 1w1w_A 154 VEQIAAQSPVELSRMF 169 (430)
T ss_dssp TTHHHHSCHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHH
Confidence 5777777777766655
No 372
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=22.22 E-value=79 Score=28.44 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
.=+.+..|+++.++|++|+++|.+|.+
T Consensus 159 ~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 159 CLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335666677777777777777777654
No 373
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=22.13 E-value=2.7e+02 Score=24.40 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
+.+|.+.+..|..++.......-.+-++++.+|-.+-.|++.
T Consensus 105 L~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 105 IAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 356666777788888888888888888888888877777654
No 374
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.03 E-value=1.6e+02 Score=22.36 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy4245 296 EIKQIVEERN 305 (328)
Q Consensus 296 E~~rl~rErd 305 (328)
|+.++..++|
T Consensus 40 eI~eLr~~Ld 49 (67)
T 1zxa_A 40 EIQELKRKLH 49 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 375
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=21.99 E-value=2.7e+02 Score=21.37 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVE-ERNHYKKQYEI 313 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~r-Erd~yK~K~e~ 313 (328)
+..|..|+..|..++..+..|...+.. |++.+|.+|++
T Consensus 8 i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek 46 (71)
T 1s1c_X 8 IEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEK 46 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666665543 34445555554
No 376
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.96 E-value=2.2e+02 Score=25.42 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q psy4245 274 HQRQELEVTNKHLQQQLQKMKSEIKQIVE--------ERNHYKKQYEIVM 315 (328)
Q Consensus 274 qq~~~LE~E~~~L~~Ele~Lk~E~~rl~r--------Erd~yK~K~e~L~ 315 (328)
.+...|+.+...|..+++++-.+++++.. =++.=|.|+..|.
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44566777777777777777776665433 2455566665555
No 377
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.94 E-value=2.3e+02 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYK 308 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK 308 (328)
++.|..-+.+|...+..|.....+..+|+..++
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 344444444555555555555555555544443
No 378
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=21.88 E-value=1.7e+02 Score=22.63 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+++..||.+=|+|| |.+.|. .-.++.|-.+.=.=..+|-.+.++.-..-++.+.+|+++..|..
T Consensus 3 edi~eLkkevkKL~-~~A~q~-----kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~~~ 66 (71)
T 2js5_A 3 EGAEELKAKLKKLN-AQATAL-----KMDLHDLAEDLPTGWNRIMEVAEKTYEAYRQLDEFRKSTASLEH 66 (71)
T ss_dssp CCHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHSTTTSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHH-HHHHHH-----HHhHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777766665 444442 34556655543333467778888888888889999999888864
No 379
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=21.81 E-value=2.3e+02 Score=21.19 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
..+|-.++..+-.++-.|-.+...+.+++..||..
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~ 39 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTE 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666666654
No 380
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.81 E-value=3.2e+02 Score=26.79 Aligned_cols=40 Identities=5% Similarity=0.070 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4245 278 ELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRN 317 (328)
Q Consensus 278 ~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~~ 317 (328)
.+.+++..|+..+.....++..|...++..+.+++.|...
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~ 127 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQK 127 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444455555555555556666666666666666666543
No 381
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=21.77 E-value=1.4e+02 Score=23.50 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 245 PRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 245 SkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+.+++..||.+=|+|| |.+.|. .-.+|.|-.+.=.=..+|-.+.++.-..-++.+.+|+++..+..
T Consensus 13 t~~di~eLkkevkKL~-~~A~q~-----kmdLHDLaEdLP~~w~~i~~vA~~tyda~~~l~~ak~~L~~~e~ 78 (81)
T 3csx_A 13 TPEAVADLKKKVRKLN-SKAGQM-----KMDLHDLAEGLPTDYENLVETAEKTYEIFRELDQLKKKLNIWEE 78 (81)
T ss_dssp -----CCHHHHHHHHH-HHHHHH-----HHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3357777777777776 555442 35566666554444577778888888888888888888887763
No 382
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=21.74 E-value=3.1e+02 Score=21.99 Aligned_cols=22 Identities=0% Similarity=0.299 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy4245 293 MKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 293 Lk~E~~rl~rErd~yK~K~e~L 314 (328)
|+..++.+..+-..+..++..|
T Consensus 73 lq~~l~~~~~~~~~l~~~~~~l 94 (107)
T 2no2_A 73 LQGSLETSAQSEANWAAEFAEL 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3434444444433344444333
No 383
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=21.73 E-value=95 Score=21.08 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 293 MKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 293 Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
|++++....+++|.+|.+-..|..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~ 28 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHH
Confidence 444555555555555555554443
No 384
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.68 E-value=2.9e+02 Score=21.62 Aligned_cols=34 Identities=12% Similarity=0.338 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e 312 (328)
+|....++..++..|.+.+..+..++|.++.++.
T Consensus 35 ~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 35 AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444443
No 385
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.65 E-value=2e+02 Score=23.82 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHhhhhchHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYA 265 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYA 265 (328)
++.+++.+|+.+++ ||+-|+.
T Consensus 49 Y~~~dl~~l~~I~~-lr~~G~s 69 (154)
T 2zhg_A 49 YKRDVLRYVAIIKI-AQRIGIP 69 (154)
T ss_dssp BCTTHHHHHHHHHH-HHHHTCC
T ss_pred eCHHHHHHHHHHHH-HHHCCCC
Confidence 77788888888765 5655653
No 386
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=21.58 E-value=1.9e+02 Score=25.17 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHH
Q psy4245 244 YPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHL 286 (328)
Q Consensus 244 LSkeEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L 286 (328)
=|-+++..|+..|.++++|. ++|.++..+|..+...+
T Consensus 2 ~s~qe~~~Le~Ek~~~~~rI------~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 2 EFAQECQNLEVERQRRLERI------KQKQSQLQELILQQIAF 38 (155)
T ss_dssp -CHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 36678889998888888776 35566666665544443
No 387
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.57 E-value=2.5e+02 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 286 LQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 286 L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
|++.++-|+.++..-..-+..|+..++.+
T Consensus 115 LRRrIqyLKekVdnQlsnIrvLQsnLedq 143 (562)
T 3ghg_A 115 LRSRIEVLKRKVIEKVQHIQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443334444444444433
No 388
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=21.56 E-value=2.4e+02 Score=21.83 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQ 310 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K 310 (328)
..+|-.++..+-.++-.|-.|...+.+++..+|..
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777777777777777777777754
No 389
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.51 E-value=2.4e+02 Score=24.45 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVM 315 (328)
Q Consensus 275 q~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~ 315 (328)
++..|+.++.....++.+|..++.+-..-|.........+.
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie 85 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 85 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666655555555444444443
No 390
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=21.51 E-value=2.1e+02 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy4245 292 KMKSEIKQIVEERNHYKKQYE 312 (328)
Q Consensus 292 ~Lk~E~~rl~rErd~yK~K~e 312 (328)
+|+++...+..|++.++..+.
T Consensus 53 KL~Rk~DKl~~ele~l~~~l~ 73 (93)
T 3sjb_C 53 KNNRKLDSLDKEINNLKDEIQ 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 391
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=21.49 E-value=1.5e+02 Score=23.27 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNH 306 (328)
Q Consensus 273 Lqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~ 306 (328)
-..|..||++......+...+.+++.+...|+..
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeLDqTL~ELns 76 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQMLDQTLLELNN 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999988888753
No 392
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=21.34 E-value=2.1e+02 Score=26.35 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 290 LQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 290 le~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
+..|++|+.++..|.-.-...+..+++
T Consensus 133 l~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 133 IPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 334444444443333333334433333
No 393
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=21.24 E-value=3.4e+02 Score=22.22 Aligned_cols=65 Identities=14% Similarity=0.215 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4245 247 DQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMR 316 (328)
Q Consensus 247 eEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L~~ 316 (328)
.|.++|+ |.|.+... ++--+=+.-.++|-.|+..|+.+++.+..+...-.+|.......|..|..
T Consensus 20 ~Eta~L~---~al~~eds--d~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~ 84 (101)
T 4aj5_1 20 CETARLQ---RALDGEES--DFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLME 84 (101)
T ss_dssp HHHHHHH---HHHHTCSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHhccccc--cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455553 66765543 33444466778889999999988888777666666666665555555543
No 394
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=21.24 E-value=1.2e+02 Score=25.67 Aligned_cols=51 Identities=12% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhhhhchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 246 RDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEI 297 (328)
Q Consensus 246 keEv~~LKQrRRTLKNRGYAQnCRkKRLqq~~~LE~E~~~L~~Ele~Lk~E~ 297 (328)
+.||..|-++=-+++-+.+|..-|-- ..-+..+++|+..|..+|++|+...
T Consensus 9 K~Eiq~L~drLD~~~rKlaaa~~rgd-~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 9 KNEIKRLSDRLDAIRHQQADLSLVEA-ADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTC-TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565555554444444444444432 3345556666666666666665543
No 395
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=20.90 E-value=1.7e+02 Score=30.08 Aligned_cols=9 Identities=0% Similarity=0.003 Sum_probs=5.5
Q ss_pred CChhHhhcc
Q psy4245 224 ISDDLLMCL 232 (328)
Q Consensus 224 fSDEeLVsm 232 (328)
.++++++.+
T Consensus 332 p~~~e~~~i 340 (854)
T 1qvr_A 332 PTVEETISI 340 (854)
T ss_dssp CCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 466666655
No 396
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.84 E-value=1.8e+02 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 281 VTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEI 313 (328)
Q Consensus 281 ~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~ 313 (328)
++.+.|+.+...|+.+++++..+++.+...+..
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~ 38 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQ 38 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 397
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.79 E-value=3.5e+02 Score=22.22 Aligned_cols=39 Identities=10% Similarity=0.154 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 276 RQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 276 ~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
+..|+..+.+|+.+++.-+.++....-|.+.++..++.|
T Consensus 42 v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 42 VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544444444444444444444444
No 398
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.66 E-value=1.3e+02 Score=21.44 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 279 LEVTNKHLQQQLQKMKSEIKQIVEERN 305 (328)
Q Consensus 279 LE~E~~~L~~Ele~Lk~E~~rl~rErd 305 (328)
||+++..|+.++..-+.+...+..++|
T Consensus 17 Lek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 17 LKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 399
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=20.55 E-value=2.6e+02 Score=23.16 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhchHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 249 IAKLKAKRRTLKNRGYAQNCRSKRL-HQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIV 314 (328)
Q Consensus 249 v~~LKQrRRTLKNRGYAQnCRkKRL-qq~~~LE~E~~~L~~Ele~Lk~E~~rl~rErd~yK~K~e~L 314 (328)
...++..=-+|| |.|.|--..++ .....||.--+. ...+....-+.++..|.+.++.+++.+
T Consensus 71 ~~~l~~~aH~LK--Gss~~lGa~~l~~~c~~lE~~~~~--~~~~~~~~~l~~l~~e~~~v~~~L~~~ 133 (153)
T 3us6_A 71 FKKVDAHVHQFK--GSSASIGAQRVKNSCVAFRNFCEE--QNIDACRRCLQQVKQEYLLVKNKLETL 133 (153)
T ss_dssp HHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHhcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554 67777666666 333444433221 122233333444444444444444443
No 400
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=20.54 E-value=1.2e+02 Score=25.10 Aligned_cols=17 Identities=0% Similarity=0.151 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy4245 287 QQQLQKMKSEIKQIVEE 303 (328)
Q Consensus 287 ~~Ele~Lk~E~~rl~rE 303 (328)
..+++.|..+++++.++
T Consensus 144 ~~~i~~L~~~l~~le~~ 160 (166)
T 3pjs_K 144 TRTTRALHERFDRLERM 160 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 401
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.18 E-value=1.2e+02 Score=22.19 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4245 271 KRLHQRQELEVTNKHLQQQLQKM 293 (328)
Q Consensus 271 KRLqq~~~LE~E~~~L~~Ele~L 293 (328)
|-+.+|..||.|+..|+++.+.-
T Consensus 3 rQ~EEILRLErEIE~Lqrqke~~ 25 (51)
T 2lw9_A 3 KQVEEILRLEKEIEDLQRMKEQQ 25 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888877766543
Done!