RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4245
(328 letters)
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 71.3 bits (175), Expect = 5e-17
Identities = 22/41 (53%), Positives = 33/41 (80%)
Query: 224 ISDDLLMCLSVRELNKKLHGYPRDQIAKLKAKRRTLKNRGY 264
++D+ L+ +SVRELN+ L G +++I +LK +RRTLKNRGY
Sbjct: 1 LTDEELVTMSVRELNQHLRGLSKEEIIQLKQRRRTLKNRGY 41
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Length = 74
Score = 39.8 bits (93), Expect = 2e-05
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 8/65 (12%)
Query: 217 PYSESDLISDDLLMCLSVRELNK--KLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLH 274
P S + +S+ EL + K Q ++ RR KN+ A+ CR +R
Sbjct: 16 PVSAFQISE------MSLSELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTD 69
Query: 275 QRQEL 279
+ ++
Sbjct: 70 RHDKM 74
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 29.4 bits (66), Expect = 0.14
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 275 QRQELEVTNKHLQQQLQKMKSEIKQIVEE 303
+R N+ +Q+ L+ + SE+ +E
Sbjct: 20 ERTTEAEKNERVQKHLKALTSELANARDE 48
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 30.7 bits (69), Expect = 0.14
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 288 QQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSE 322
+QL++M +++Q+ + K YE + + + +
Sbjct: 8 EQLEQMAQQLEQLKSQLETQKNMYESMAKTTNLGD 42
Score = 25.3 bits (55), Expect = 9.5
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 289 QLQKMKSEIKQIVEERNHYKKQYE 312
+L K +++Q+ ++ K Q E
Sbjct: 2 ELIKQGEQLEQMAQQLEQLKSQLE 25
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 102
Score = 28.6 bits (64), Expect = 0.34
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 20/70 (28%)
Query: 49 ATNHNISNHQRLPSIQSIPVP----NGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLHGG 104
H ++ QR IP+ G S Q P + PG + ML
Sbjct: 41 TATHTVNTDQRR-----IPLTLTNNGGNSYSFQVPSDSGVALPGY------W---MLF-- 84
Query: 105 VLMYPGTPGT 114
V+ G P
Sbjct: 85 VMNSAGVPSV 94
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 27.6 bits (61), Expect = 1.2
Identities = 4/48 (8%), Positives = 20/48 (41%)
Query: 277 QELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAE 324
E+ Q Q++ ++ +++ + + + + + + + +E
Sbjct: 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSE 51
>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus
subtilis [TaxId: 1423]}
Length = 330
Score = 28.3 bits (62), Expect = 1.2
Identities = 8/116 (6%), Positives = 24/116 (20%), Gaps = 12/116 (10%)
Query: 30 DHFEDVNVKREIINNNEQDATNHNISNHQRLPSIQSIPVPNGGSVHIQSPPHHLLTPPGS 89
+ + + + + + ++ +I + + L P
Sbjct: 121 HLYSVIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDG 180
Query: 90 ----SIHPQDYQNSMLHGGVLMYPGTPGTPPDT--------PPGSNSPPHQHYHHM 133
+ + + + P G H H +H
Sbjct: 181 AVPYVLESGEGDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHT 236
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 26.9 bits (59), Expect = 1.5
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 15/96 (15%)
Query: 86 PPGSSIHPQDYQNSMLHGGVLMYPGTPGTPPDTPPGSNSPPHQHYHHMDHPSHPHIQQLP 145
PPG +++ + QNS+ V M G+ ++
Sbjct: 20 PPGMTLNEKSVQNSITQWIVDME------------GAPGTLYEGEKFQLLFKFSSRYPFD 67
Query: 146 PRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWS 181
+ +P HP+ + + L + DWS
Sbjct: 68 SPQVMFTGENIPVHPHVYSNGHICLSILTE---DWS 100
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 27.6 bits (60), Expect = 2.4
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 258 TLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSE 296
TL+ + +S + + E++ L+Q L K K++
Sbjct: 319 TLR---FGMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ 354
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 26.0 bits (57), Expect = 2.6
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 284 KHLQQQLQKMKSEIKQIVEERNHYKKQ 310
+Q + QK+ SE + + R K +
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHK 81
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 27.0 bits (58), Expect = 3.3
Identities = 10/92 (10%), Positives = 19/92 (20%), Gaps = 2/92 (2%)
Query: 127 HQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEH 186
+ + + P + D P + M R A E
Sbjct: 75 SAIATLDELSNGRATLGIGPGDKATFDALGIEWVKPVSTIRDAIAMMRTLLAGEKT--ES 132
Query: 187 GGKYLHDEPSRPMSVSSSSVMSPSSRTTTCPY 218
G + + + + P T
Sbjct: 133 GAQLMGVKAVQEKIPIYMGAQGPMMLKTAGEI 164
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 25.2 bits (55), Expect = 3.8
Identities = 7/59 (11%), Positives = 22/59 (37%)
Query: 236 ELNKKLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMK 294
L + ++ ++ + + + Y + +L+ N L+QQ++ +
Sbjct: 23 SLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>d1b9oa_ d.2.1.2 (A:) alpha-Lactalbumin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 123
Score = 26.0 bits (57), Expect = 4.1
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 231 CLSVRELNKKLHGYPRDQIA 250
C + L K + GY +
Sbjct: 6 CELSQLL-KDIDGYGGIALP 24
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 171
Score = 26.2 bits (57), Expect = 4.3
Identities = 17/82 (20%), Positives = 22/82 (26%), Gaps = 11/82 (13%)
Query: 66 IPVPNGGSVHIQSPPHHLLTPPGSSIHPQDYQNSMLH-GGVLMYPGTPGTPPDTPPGSNS 124
+V I + LTP +H +H G P PG+
Sbjct: 21 EFANGYATVTIATTGVGKLTPGFHGLH--------IHQVGKCEPNS--VAPTGGAPGNFL 70
Query: 125 PPHQHYHHMDHPSHPHIQQLPP 146
HYH H P L
Sbjct: 71 SAGGHYHVPGHTGTPASGDLAS 92
>d1yroa1 d.2.1.2 (A:1-123) alpha-Lactalbumin {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 123
Score = 25.6 bits (56), Expect = 5.4
Identities = 4/20 (20%), Positives = 7/20 (35%), Gaps = 1/20 (5%)
Query: 231 CLSVRELNKKLHGYPRDQIA 250
C + K + GY +
Sbjct: 6 CKVSHAI-KDIDGYQGISLL 24
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 25.9 bits (57), Expect = 6.0
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 291 QKMKSEIKQIVEE-RNHYKKQYEIVMRNKDR 320
+ +I+ +V E RN Y Y+I+++N ++
Sbjct: 164 EAEYRDIRLMVMEIRNAYAVLYDIILKNFEK 194
Score = 25.5 bits (56), Expect = 8.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 282 TNKHLQQQLQKMKSEIKQIVEERN 305
N+ + LQ++K EIK ++E+ N
Sbjct: 64 CNEKIVVLLQRLKPEIKDVIEQLN 87
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis
glycosyltransferase MurG {Escherichia coli [TaxId: 562]}
Length = 351
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/181 (8%), Positives = 40/181 (22%), Gaps = 11/181 (6%)
Query: 127 HQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDEH 186
+ + P + + + +P + +
Sbjct: 155 NPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSG 214
Query: 187 GGKYLHDEPSRPMSVSSSSVMSPSSRTTTCPYSESDLI-------SDDLLMCLSVRELNK 239
G E + + ++ Y+ +D++ + + + L
Sbjct: 215 KGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFV 274
Query: 240 KLHGYPRDQIAKLKAKRRTLKNRGYAQNCRSKRLHQRQELEVTNKHLQQQLQKMKSEIKQ 299
R Q L+ G A+ +L ++ L M +
Sbjct: 275 PFQHKDRQQYWNALP----LEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARA 330
Query: 300 I 300
Sbjct: 331 A 331
>d1g0ha_ e.7.1.1 (A:) Archaeal inositol
monophosphatase/fructose-1,6-bisphosphatase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 252
Score = 25.9 bits (55), Expect = 7.5
Identities = 5/64 (7%), Positives = 15/64 (23%)
Query: 126 PHQHYHHMDHPSHPHIQQLPPRAQTYHDMFMPPHPNPFRQEEVPLDMRRHCAADWSLVDE 185
++ + + A ++ + P A+ + + E
Sbjct: 152 YPSKKIDLEKLRNKVKRVRIFGAFGLEMCYVAKGTLDAVFDVRPKVRAVDIASSYIICKE 211
Query: 186 HGGK 189
G
Sbjct: 212 AGAL 215
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 23.9 bits (52), Expect = 7.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 284 KHLQQQLQKMKSEIKQIVEERNHYK 308
K+LQQ K++ E + K
Sbjct: 36 KYLQQVNHKLRQENMVLKLANQKNK 60
>d2p61a1 a.24.29.1 (A:34-152) Hypothetical protein TM1646
{Thermotoga maritima [TaxId: 2336]}
Length = 119
Score = 24.6 bits (54), Expect = 8.8
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 9/39 (23%)
Query: 280 EVTNKHLQQQLQKMKSEI----KQIVEERNH-----YKK 309
+V H ++ L++ E+ ++V YK
Sbjct: 8 DVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKN 46
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 25.4 bits (55), Expect = 9.8
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 273 LHQRQELEVTNKHLQQQLQKMKSEIKQIVEERNHYKKQYEIVMRNKDRSEAEHLYL 328
+ N+ L Q QK++ + + + Y+ + D+ +AE L
Sbjct: 89 QLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKL 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.398
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,283,892
Number of extensions: 62680
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 58
Length of query: 328
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,226,816
Effective search space: 296889472
Effective search space used: 296889472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)