RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4246
(328 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 165 bits (421), Expect = 2e-49
Identities = 45/127 (35%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ ++TGAN+G+G TAR LA G VI+A R K A + + Q
Sbjct: 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVR 67
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLT 239
EL+L L SV++FA+ ++L+ NAG+ + ++ T DGFE+ NHL HF LT
Sbjct: 68 ELDLQDLSSVRRFADG----VSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALT 123
Query: 240 LQLENAL 246
L L
Sbjct: 124 NLLLPRL 130
Score = 66.9 bits (164), Expect = 7e-13
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 250 AKLFAR--QQGAATSIYCATSLDLS---LPVSGSYFNNCCRCPPSKAAQDEALATKLWKL 304
++ A GA ++Y A+ + Y S+ A+D +A LW L
Sbjct: 221 TRVVATDADFGARQTLYAASQDLPGDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWAL 280
Query: 305 SEEM 308
SE++
Sbjct: 281 SEQL 284
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 145 bits (369), Expect = 6e-42
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 5/128 (3%)
Query: 126 AIVTGANTGIGFETARSLA-LHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
A+VTG N GIG R L L V+L R + + A+ ++ E S + +L++
Sbjct: 7 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRF--HQLDID 64
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQL 242
L+S++ + +K++ L++LV NAG+ T E T + N + +L
Sbjct: 65 DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTEL 124
Query: 243 ENALIKGA 250
+
Sbjct: 125 LPLIKPQG 132
Score = 38.1 bits (89), Expect = 0.002
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 256 QQGAATSIYCATSLDLSLPVSGSYFNNC 283
++GA T +Y A + G + +
Sbjct: 244 EEGAETPVYLALLPPDAEGPHGQFVSEK 271
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular
binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A*
2laz_A*
Length = 90
Score = 114 bits (287), Expect = 4e-32
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVS-----GDLPLGWE 63
P S +LP G+E+R T G VY+++ T + W PR G LP GWE
Sbjct: 2 PLGGSPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWE 61
Query: 64 KSVSEDGKITFYNKDTHVKTYTDPRI 89
+ G++ F + + +TDPR+
Sbjct: 62 IRNTATGRVYFVDHNNRTTQFTDPRL 87
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 115 bits (290), Expect = 4e-30
Identities = 38/159 (23%), Positives = 62/159 (38%), Gaps = 34/159 (21%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC- 184
A+VTG N GIGFE + L+ +G V+L CR + K ++A+ K L + +L++
Sbjct: 15 AVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEK-LKNSNHENVVFHQLDVTD 73
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH------------------------- 219
+ ++ A+ + F L+ILV NAGV G
Sbjct: 74 PIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPE 133
Query: 220 -------TEDGFETTFQVNHLAHFYLTLQLENALIKGAK 251
T + E ++N+ +T L L
Sbjct: 134 AQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDS 172
Score = 32.6 bits (74), Expect = 0.14
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 256 QQGAATSIYCATSLDLSLPVSGSYFNNC 283
++GA + A D SG +++
Sbjct: 281 EEGAEHVVRIALFPDDG--PSGFFYDCS 306
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila
melanogaster} SCOP: b.72.1.1 b.72.1.1
Length = 88
Score = 107 bits (269), Expect = 1e-29
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKV---SGDLPLGWEKS 65
D+ LP GWE+++ +D VY+VNH TQW PRT ++ G LP GWE
Sbjct: 5 FHMDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIR 64
Query: 66 VSEDGKITFYNKDTHVKTYTDPR 88
+ G+ F + +T T+ DPR
Sbjct: 65 YTAAGERFFVDHNTRRTTFEDPR 87
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 89.9 bits (224), Expect = 4e-21
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+S A++TG+++GIG A A G ++L R +D+ ++A + EK + + +
Sbjct: 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL-KEKFGVRVLEV 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
+++ + V E + F +ILV NAG ++ ++ +++ +A
Sbjct: 63 AVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVR 122
Query: 238 LT 239
L
Sbjct: 123 LA 124
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear
protein, mRNA splicing, ribonucleoprotein; NMR
{Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Length = 75
Score = 84.6 bits (209), Expect = 5e-21
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 20 GWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDT 79
W+E A G +YY N T+ + W P+ + ++ GW+ + + DGK+ +YN T
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62
Query: 80 HVKTYTDPRIV 90
++T P
Sbjct: 63 RETSWTIPAFE 73
Score = 54.9 bits (132), Expect = 3e-10
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
L + GW+ TADG VYY N T T WT P
Sbjct: 31 ELISQEELLLRENGWKAAKTADGKVYYYNPTTRETSWTIPA 71
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11,
protein binding; NMR {Homo sapiens}
Length = 92
Score = 84.7 bits (209), Expect = 7e-21
Identities = 20/89 (22%), Positives = 32/89 (35%)
Query: 9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSE 68
+ + W E + DG YY N T+ + W P W++ S+
Sbjct: 4 VAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSD 63
Query: 69 DGKITFYNKDTHVKTYTDPRIVFAKEEKE 97
GK +YN T + P+ + E E
Sbjct: 64 SGKTYYYNSQTKESRWAKPKELEDLEGLE 92
Score = 47.0 bits (111), Expect = 3e-07
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
L + W+E + G YY N T+ ++W P+
Sbjct: 43 DLKTPAEQLLSKCPWKEYKSDSGKTYYYNSQTKESRWAKPK 83
Score = 37.3 bits (86), Expect = 8e-04
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHST 110
+ W + S DG+ +YN +T T+ P + E+ ++Y +
Sbjct: 9 ASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDS 64
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY
motif, liddle syndrome, proline-rich, ligase; NMR
{Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A
2joc_A*
Length = 50
Score = 81.5 bits (202), Expect = 3e-20
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSG 56
+ DS+ LPPGWEER DG V+++NH + TQW PR ++G
Sbjct: 2 SPVDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ-NVAITG 50
Score = 43.0 bits (102), Expect = 3e-06
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
G LP GWE+ DG++ F N + + DPR+
Sbjct: 10 GPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRM 43
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 87.2 bits (217), Expect = 3e-20
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DLS A+VTG ++GIG T L G V R ++ A S + P A+ A
Sbjct: 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFAS 64
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
++ V+ FAE ++ +ILV NAG T++ + Q+ + +
Sbjct: 65 VCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIH 124
Query: 238 LT 239
Sbjct: 125 PV 126
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 80.7 bits (200), Expect = 5e-20
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
S LP GWE R T DG Y+V+H T + PRTG
Sbjct: 2 SSGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPRTG 40
Score = 42.2 bits (100), Expect = 4e-06
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
S LP GWE + DG F + + TY DPR
Sbjct: 5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 86.9 bits (216), Expect = 6e-20
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L+ A+VTG + GIG A+ L G RV + R + D +++ C A+
Sbjct: 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRL---SAYGDCQAI 82
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
+L ++ A+ + L+ILV NAG S+ G+E Q+N + F
Sbjct: 83 PADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFS 142
Query: 238 LTLQLENALIKGA 250
QL L + A
Sbjct: 143 CIQQLLPLLRRSA 155
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 86.5 bits (215), Expect = 8e-20
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTG+ GIG A SL G V++ R + N+ I +I + P A +
Sbjct: 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPV 66
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
+L + + E+ + ++IL+ N G+F F ++ + F+VN ++
Sbjct: 67 VADLGTEQGCQDVIEK----YPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVR 122
Query: 238 LT 239
LT
Sbjct: 123 LT 124
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 80.0 bits (198), Expect = 1e-19
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGV 50
P + LP GWE R +G ++++H T+ T W PR +
Sbjct: 5 PSEIEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLKI 46
Score = 42.3 bits (100), Expect = 4e-06
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
G LP GWE + +G+ F + +T T+ DPR+
Sbjct: 11 GFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 85.7 bits (213), Expect = 1e-19
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ A+VT ++G+GF +A LA +G R++L R+ +K A S+I + AQ +
Sbjct: 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIV 63
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
++ + + E+ + +ILV + G G + ++ ++++ + +
Sbjct: 64 AGDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVW 122
Query: 238 LT 239
+
Sbjct: 123 VG 124
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 85.8 bits (213), Expect = 1e-19
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ ++ ++TGA GIG TA A +++L + + +K + A+
Sbjct: 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC--KGLGAKVHT 84
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
++ + + A++ + + ++ILV NAGV F+ + E TF+VN LAHF
Sbjct: 85 FVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHF 144
Query: 237 YLT 239
+ T
Sbjct: 145 WTT 147
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 84.9 bits (211), Expect = 2e-19
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAM 179
L++ +VTGA+ GIG E A + A +G VIL R+ +K S I E Q +
Sbjct: 10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFIL 69
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHF 236
+L C ++ ++ A+ + L+ ++ NAG+ G ++ QVN A F
Sbjct: 70 DLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATF 129
Query: 237 YLT 239
LT
Sbjct: 130 MLT 132
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.22.1.1
Length = 57
Score = 79.4 bits (196), Expect = 2e-19
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 3 ANNVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK 53
++ + D+ LP WE T +G VY+++H T+ T W PR K++
Sbjct: 1 GSSGSSGAEDNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQ 51
Score = 43.6 bits (103), Expect = 2e-06
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENP 99
G LP WE + +E+G++ F + +T ++ DPR + ++ +
Sbjct: 13 GPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQSGPSS 56
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif,
binding affinity, signalling protein,ligase; NMR
{Drosophila melanogaster}
Length = 46
Score = 79.3 bits (196), Expect = 2e-19
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 9 PDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
S E+ LPP W +V +G ++++HA+ T W PR G
Sbjct: 3 LGSGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG 43
Score = 39.2 bits (92), Expect = 6e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
LP W V+ +G+ F + + T+ DPR
Sbjct: 9 EPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPR 41
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 78.8 bits (195), Expect = 3e-19
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKV 54
+ + LP GWE T+ G Y+ NH + T W PR + ++
Sbjct: 2 EIPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQM 46
Score = 40.3 bits (95), Expect = 2e-05
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKE 94
LP GWE + + G+ F N T+ DPR +
Sbjct: 7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKAMLSQ 45
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka,
transcription; NMR {Oryzias latipes}
Length = 46
Score = 78.9 bits (195), Expect = 3e-19
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVK 51
+ S + LP GWE+ +T +G +YY+NH + T W PR +
Sbjct: 2 SPNSSPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRLETR 46
Score = 43.0 bits (102), Expect = 2e-06
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
SG LP GWE++++ +G+I + N ++ DPR+
Sbjct: 9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL 43
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 84.2 bits (209), Expect = 3e-19
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 22/164 (13%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIA 178
+ AI+TGA+ GIG A LA G RV+L RS +I+ K + I
Sbjct: 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIV 63
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFY 237
+ L++ ++ +K+ +++ILV A +F G S D F ++N +A +
Sbjct: 64 LPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYG 123
Query: 238 LTLQLENALIKGAKLFARQQG--------------AATSIYCAT 267
+ + + + ++ G A IY +T
Sbjct: 124 IL----KTVTEI--MKVQKNGYIFNVASRAAKYGFADGGIYGST 161
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 84.5 bits (210), Expect = 4e-19
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ L N A+VT + GIG AR LA G V+++ R + + ++ + +
Sbjct: 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL--QGEGLSVTG 67
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAH 235
++ + + ++ ++ILV NA V FG TE+ ++ VN A
Sbjct: 68 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKAT 127
Query: 236 FYLT 239
+T
Sbjct: 128 VLMT 131
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 83.7 bits (208), Expect = 4e-19
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 22/157 (14%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A++TGA+ GIG AR+LA G + L RS+D+ + I+ L ++ + L++ +
Sbjct: 5 AVITGASRGIGEAIARALARDGYALALGARSVDRL-EKIAHELMQEQGVEVFYHHLDVSK 63
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQLE 243
+SV++F+++ ++F ++++V NAG+ E+ F +VN L +
Sbjct: 64 AESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTL---- 119
Query: 244 NALIKGAKLFARQQG-------------AATSIYCAT 267
A + L Y +T
Sbjct: 120 KAFLDS--LKRTGGLALVTTSDVSARLIPYGGGYVST 154
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 84.6 bits (210), Expect = 5e-19
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
L IVTGA+ GIG E A LA G V++ RS + +S L E +A
Sbjct: 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL-ELGAASAHY 82
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
+ + + ++F + K L++L+LN F + +VN L++
Sbjct: 83 IAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYV 142
Query: 237 YLT 239
LT
Sbjct: 143 VLT 145
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 83.4 bits (207), Expect = 5e-19
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 28/163 (17%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+S + IVTGA +G+G L G +V + R + + I +
Sbjct: 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-----GNAVIGIV 55
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
+L + V + +++ AG G T + + N ++ +
Sbjct: 56 ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILV 115
Query: 239 TLQLENALIKGAKLFARQQG--------------AATSIYCAT 267
Q + +L + G A S+YCA+
Sbjct: 116 AQQ---TV----RLIGERGGVLANVLSSAAQVGKANESLYCAS 151
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 84.2 bits (209), Expect = 6e-19
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L + A +TG +GIGF A HGC ++A RSL + A K+ +C+ +
Sbjct: 25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-RRCLPLS 83
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYL 238
+++ +V ++ K+F ++IL+ A + + + F+T ++ F +
Sbjct: 84 MDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV 143
Query: 239 TLQLENALIK 248
+ L +
Sbjct: 144 SRVLYEKFFR 153
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 83.7 bits (208), Expect = 6e-19
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL+ A+VTG+ G+GF A LA G RVIL +++ + + +
Sbjct: 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTL--TRKGYDAHGV 63
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
++ +++ + + ++IL+ NAG+ + ++ N + F
Sbjct: 64 AFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFL 123
Query: 238 LT 239
++
Sbjct: 124 VS 125
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 83.3 bits (207), Expect = 6e-19
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAM 179
L +VTGA GIG AR+ A HG V+L R+ + +I + +P IA+
Sbjct: 12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIAL 71
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSH-TEDGFETTFQVNHLAHF 236
L + ++ A + +F L+ L+ NA + G ++ F VN A F
Sbjct: 72 NLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF 131
Query: 237 YLT 239
LT
Sbjct: 132 MLT 134
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 83.4 bits (207), Expect = 8e-19
Identities = 32/156 (20%), Positives = 59/156 (37%), Gaps = 13/156 (8%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ AIV G G+G T R L G V+L R+ + + A+
Sbjct: 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHAL 59
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
++ L + + ++++L +NAGV +E ++ F VN F+
Sbjct: 60 RSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFF 119
Query: 238 LTLQLENALIKGAKL-----FARQQG-AATSIYCAT 267
+L + +G + A + G S+Y A+
Sbjct: 120 TVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSAS 155
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 82.9 bits (206), Expect = 1e-18
Identities = 28/130 (21%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+ I+TG ++G+G A A G RV++ R+ +K +A +I E+ Q + ++
Sbjct: 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEI--EQFPGQILTVQ 61
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
+++ ++K E+ +KF ++IL+ NA + + + +G+ + + FY
Sbjct: 62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYC 121
Query: 239 TLQLENALIK 248
+ + I+
Sbjct: 122 SQAIGKYWIE 131
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 83.8 bits (208), Expect = 1e-18
Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
A +TG TG+G L+ G + ++A R +D +I + + + A+
Sbjct: 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI-SSQTGNKVHAI 81
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
+ ++ V+ E K NI++ NA + + ++T + +
Sbjct: 82 QCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAF 141
Query: 238 LTLQLENALIK 248
+TL++ LIK
Sbjct: 142 VTLEIGKQLIK 152
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 82.8 bits (205), Expect = 1e-18
Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 20/184 (10%)
Query: 122 SNYNAIVTGANTGIGFETARSLALHGC--RVILACRSLDKANDAISKILTEKPSAQCIAM 179
S + +VTGAN GIG + L +I R ++KA + L ++ +
Sbjct: 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-----LKSIKDSRVHVL 56
Query: 180 ELNLCRLKSVKKFAEEYQKKF--RSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLA 234
L + KS+ F + + L++L+ NAGV +G VN +
Sbjct: 57 PLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTS 116
Query: 235 HFYLTLQLENALIKGAKLFARQQGAATS--IYCATSL--DLSLPVSGSYFNNCC--RCPP 288
LT +L L A + Q + + + +S ++ SGS R
Sbjct: 117 VVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRM-- 174
Query: 289 SKAA 292
SKAA
Sbjct: 175 SKAA 178
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 82.9 bits (206), Expect = 1e-18
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL A+VTG + G+GF A+ LA GC V++A R+L++A++A K+ EK + +A
Sbjct: 18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLT-EKYGVETMAF 76
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
++ + VKK E ++KF L+ +V AG+ D F +VN +Y
Sbjct: 77 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYY 136
Query: 238 LT 239
+
Sbjct: 137 VC 138
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 83.4 bits (207), Expect = 1e-18
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 14/153 (9%)
Query: 92 AKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVI 151
+ + + + H + S + I+TG++ GIG A A G +V
Sbjct: 4 SHHHHHHSSGLVPRGSHMAR---------FSGKSVIITGSSNGIGRSAAVIFAKEGAQVT 54
Query: 152 LACRSLDKANDAISKILTEKPSAQ-CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNA 210
+ R+ D+ + +IL A+ A+ ++ KF ++ILV NA
Sbjct: 55 ITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNA 114
Query: 211 GV----FGLGFSHTEDGFETTFQVNHLAHFYLT 239
G + ++ TF++N A +T
Sbjct: 115 GANLADGTANTDQPVELYQKTFKLNFQAVIEMT 147
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex;
NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB:
2op7_A
Length = 53
Score = 77.0 bits (190), Expect = 2e-18
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
+E LPPGWE R TA G ++V+H T T + PR G
Sbjct: 13 LINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRPG 51
Score = 40.8 bits (96), Expect = 2e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
G LP GWE + G+ F + +T T+ DPR
Sbjct: 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 49
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 76.5 bits (189), Expect = 2e-18
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
S LPPGWE+RV G VYYV+H + T W P
Sbjct: 2 SSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38
Score = 39.1 bits (92), Expect = 5e-05
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
S LP GWE+ V + G++ + + T+ P
Sbjct: 5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPS 38
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 82.2 bits (204), Expect = 2e-18
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L AI+TGA GIG E A + A G V+++ + D AN + +I ++ Q A
Sbjct: 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI--QQLGGQAFAC 65
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYL 238
++ + + A+ K ++ILV NAG G F F +++N + F+L
Sbjct: 66 RCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHL 125
Query: 239 T 239
+
Sbjct: 126 S 126
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 82.2 bits (204), Expect = 2e-18
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL + +VTG GIG A A G V +A RS + ++ + + S + I +
Sbjct: 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLD-QLGSGKVIGV 65
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
+ ++ A ++F ++++ NAGVF + T + F VN FY
Sbjct: 66 QTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFY 125
Query: 238 LT 239
Sbjct: 126 AV 127
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 82.2 bits (204), Expect = 2e-18
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 24/163 (14%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+ + ++TGA+ GIG AR L + G +++L R + ++I +A
Sbjct: 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI--RDAGGTALAQV 59
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYL 238
L++ SV FA+ + +++LV NAGV L D +E VN +
Sbjct: 60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWG 119
Query: 239 TLQLENALIKGAKLFARQQG--------AAT------SIYCAT 267
A++ + A++ G A ++YCAT
Sbjct: 120 I----GAVLPI--MEAQRSGQIINIGSIGALSVVPTAAVYCAT 156
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 81.8 bits (203), Expect = 3e-18
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+VTGA G G R G +VI R ++ + L ++ +L++
Sbjct: 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE-----LKDELGDNLYIAQLDVRN 57
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----FETTFQVNHLAHFYLTLQ 241
++++ ++ +++ILV NAG+ LG +ET N+ Y+T
Sbjct: 58 RAAIEEMLASLPAEWCNIDILVNNAGL-ALGMEPAHKASVEDWETMIDTNNKGLVYMT-- 114
Query: 242 LENALIKGAKLFARQQG--------AAT------SIYCAT 267
A++ G + R G A + ++Y AT
Sbjct: 115 --RAVLPG--MVERNHGHIINIGSTAGSWPYAGGNVYGAT 150
>2yse_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; MAGI-1, WW domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 76.5 bits (188), Expect = 3e-18
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 5 NVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKK 53
+ DSE ELP GWE+ +YYV+H TQ+ +P K+K
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRK 50
Score = 41.1 bits (96), Expect = 2e-05
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 9/63 (14%)
Query: 38 TEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKE 97
+ + +LP GWEK I + + Y +P + ++++
Sbjct: 3 SGSSGLDSE---------LELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLEAKRKKQL 53
Query: 98 NPL 100
Sbjct: 54 ESG 56
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 82.2 bits (204), Expect = 3e-18
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 13/155 (8%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L+ A++TGA +GIG A+ G RV + R D + AI++I + ++
Sbjct: 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI-----GGGAVGIQ 81
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYL 238
+ L + + E+ + + +++L +NAG + TE+ ++ TF N +
Sbjct: 82 ADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFT 141
Query: 239 TLQLENALIKGAK------LFARQQGAATSIYCAT 267
+ L +G+ A S+Y A+
Sbjct: 142 VQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAAS 176
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 75.9 bits (187), Expect = 4e-18
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 7 ALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTG 49
+ S + LPPGW T G YY++H T T W+HP
Sbjct: 2 SSGSSGEDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES 44
Score = 38.1 bits (89), Expect = 2e-04
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
LP GW + G+ + + +T+ ++ P
Sbjct: 10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPL 42
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 81.2 bits (201), Expect = 5e-18
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 8/122 (6%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL+N N I A GIG +T+R L + + ++ A++++ P
Sbjct: 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT-ALAELKAINPKVNITFH 60
Query: 180 ELNLCR-LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYL 238
++ + KK ++ + ++++IL+ AG+ + E T +N
Sbjct: 61 TYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------DDHQIERTIAINFTGLVNT 114
Query: 239 TL 240
T
Sbjct: 115 TT 116
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 81.4 bits (202), Expect = 5e-18
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A++TGA GIG + AR+ A G R++L+ R + + + A + E+ +
Sbjct: 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL-GEQFGTDVHTV 75
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
++L + + A + F L++LV NAG+ F+ T VN A
Sbjct: 76 AIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPAL 135
Query: 238 LT 239
L
Sbjct: 136 LA 137
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 81.5 bits (202), Expect = 5e-18
Identities = 35/139 (25%), Positives = 53/139 (38%), Gaps = 5/139 (3%)
Query: 104 QKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
+ H LS A+VTGA+ GIG AR L G RV+L R ++K
Sbjct: 10 HHHSSGHIDDDDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV 69
Query: 164 ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHT 220
+I + + +L ++ FA ++LV NAGV G +
Sbjct: 70 EREI--VAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMK 127
Query: 221 EDGFETTFQVNHLAHFYLT 239
++ VN A + L
Sbjct: 128 PAEWDALIAVNLKAPYLLL 146
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; BAI1-associated protein 1
(BAP-1); NMR {Homo sapiens}
Length = 49
Score = 75.5 bits (186), Expect = 5e-18
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 5 NVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
+ DSE ELP GWE+ +YYV+H TQ+ +P
Sbjct: 2 SSGSSGLDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45
Score = 37.4 bits (87), Expect = 2e-04
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 9/53 (16%)
Query: 37 ATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
++ + +LP GWEK I + + Y +P
Sbjct: 2 SSGSSGLDSE---------LELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 81.0 bits (201), Expect = 5e-18
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A++TGA++GIG TAR+LA G V +A R ++K ++ A+ +
Sbjct: 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDEL--TAAGAKVHVL 61
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFY 237
EL++ + V + L+ILV NAG+ LG + N L Y
Sbjct: 62 ELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMY 121
Query: 238 LTLQLENALIKGAKLF-------ARQQGAATSIYCAT 267
+T L++ R ++Y AT
Sbjct: 122 MTRAALPHLLRSKGTVVQMSSIAGRVNVRNAAVYQAT 158
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 75.3 bits (186), Expect = 6e-18
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
LPPGWE R +G VYY N T T W P
Sbjct: 2 SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPT 39
Score = 40.3 bits (95), Expect = 2e-05
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVF 91
S LP GWE+ +GK+ ++N T T+ P I+
Sbjct: 6 SMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTIIL 42
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 81.7 bits (202), Expect = 7e-18
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+D + A VTG G+G R L GC+V +A D + A++ + E + +
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMG 63
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN----- 231
++L++ + K A+E + +F ++IL NAGV + D ++ VN
Sbjct: 64 VQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVV 123
Query: 232 H---------LAHFYLTLQLENALIKGAKLFARQQGAATSIYCAT 267
+ + Q ++ A + A + IY T
Sbjct: 124 NGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTT 168
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 81.6 bits (202), Expect = 8e-18
Identities = 33/133 (24%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA---ISKILTEKPSAQCI 177
L AIVTG TGIG + L G V++A R L++ A + L A+ I
Sbjct: 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVI 75
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAH 235
++ N+ + V + F +N LV N G + G+ + N
Sbjct: 76 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGT 135
Query: 236 FYLTLQLENALIK 248
FY+ + ++ +K
Sbjct: 136 FYMCKAVYSSWMK 148
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 74.5 bits (184), Expect = 9e-18
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
+ LPPGWE R+ +G ++++H T+ T W PR
Sbjct: 3 PGIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
Score = 41.4 bits (98), Expect = 8e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 54 VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
+ LP GWE ++ +G+ F + +T T+ DPR+
Sbjct: 5 IQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPRL 40
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 80.7 bits (200), Expect = 1e-17
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTGA+ GIGF A + A G ++ + + + ++ +
Sbjct: 31 SLKGKIALVTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAY--KAAGINAHGY 88
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
++ ++ + + + ++ILV NAG+ T F ++ A F
Sbjct: 89 VCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVPMIEMTAAQFRQVIDIDLNAPFI 148
Query: 238 LT 239
++
Sbjct: 149 VS 150
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 80.3 bits (199), Expect = 1e-17
Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 29/167 (17%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ +TGA +G G AR A G ++L R ++ A++ L+ K + + +
Sbjct: 18 SHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRREERL-QALAGELSAK--TRVLPL 74
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----FETTFQVNHLAH 235
L++ ++ + ++F +L L+ NAG+ LG + ++T N
Sbjct: 75 TLDVRDRAAMSAAVDNLPEEFATLRGLINNAGL-ALGTDPAQSCDLDDWDTMVDTNIKGL 133
Query: 236 FYLTLQLENALIKGAKLFARQQG---------AAT------SIYCAT 267
Y T L+ L A G A +Y T
Sbjct: 134 LYST----RLLLPR--LIAHGAGASIVNLGSVAGKWPYPGSHVYGGT 174
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 74.2 bits (183), Expect = 1e-17
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
S LP GWEE TADG Y++NH T+ T W HP
Sbjct: 2 SSGSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38
Score = 41.8 bits (99), Expect = 5e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
S LP GWE++ + DG F N T ++ P +
Sbjct: 5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM 39
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 80.0 bits (198), Expect = 2e-17
Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 20/164 (12%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+ A+VTGA+ GIG AR+L G +V+ R++ + ++ + I
Sbjct: 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYR 89
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYL 238
+L + + + + ++I + NAG+ + G++ F VN LA
Sbjct: 90 CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSIC 149
Query: 239 TLQLENALIK---------------GAKLFARQQGAATSIYCAT 267
T + ++ + G ++ + T Y AT
Sbjct: 150 TREAYQSMKERNVDDGHIININSMSGHRVLP---LSVTHFYSAT 190
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 80.4 bits (199), Expect = 2e-17
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DLS + +VTG GIG A A G V +A RS + +++ L E + I +
Sbjct: 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPREL-SSVTAELGELGAGNVIGV 96
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
L++ S A F +L+++ NAG+F + T + VN Y
Sbjct: 97 RLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVY 156
Query: 238 LT 239
Sbjct: 157 TV 158
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 80.0 bits (198), Expect = 2e-17
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 26/168 (15%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHG---CRVILACRSLDKANDAISKILTEKPSAQC 176
L+ ++TGA+ GIG TA ++ILA R L+K + I E P+A+
Sbjct: 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKV 89
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAG-VFGLGFSHT--EDGFETTFQVNHL 233
+L++ + + +K F E ++F+ ++ILV NAG G + + F N
Sbjct: 90 HVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVT 149
Query: 234 AHFYLTLQLENALIKGAKLFARQQG--------AAT------SIYCAT 267
A +T A++ A+ G A SIYCA+
Sbjct: 150 ALINIT----QAVLPI--FQAKNSGDIVNLGSIAGRDAYPTGSIYCAS 191
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 79.9 bits (198), Expect = 2e-17
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 7/121 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIAMELNLC 184
AI+TG++ GIG TA A G +V + R ++ + +IL ++ ++
Sbjct: 9 AIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVT 68
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH------TEDGFETTFQVNHLAHFYL 238
+ KF L+ILV NAG + + ++ T +N + L
Sbjct: 69 TDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIAL 128
Query: 239 T 239
T
Sbjct: 129 T 129
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 79.5 bits (197), Expect = 3e-17
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DLS A++TGA+TGIG + A + A G +V +A R D +I + + +
Sbjct: 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEI--AGVGGKALPI 86
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
++ + V+ ++ + ++I V NAG+ + F+ N F
Sbjct: 87 RCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFL 146
Query: 238 LT 239
Sbjct: 147 TA 148
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 73.3 bits (181), Expect = 3e-17
Identities = 18/34 (52%), Positives = 19/34 (55%)
Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
LPPGWEE+V G YYVNH TQW P
Sbjct: 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35
Score = 40.1 bits (95), Expect = 2e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
S LP GWE+ V G+ + N + + P +
Sbjct: 2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPSL 36
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 73.4 bits (181), Expect = 3e-17
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 12 DSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
E LP GWE+ +T DG +YY+NH + T W PR
Sbjct: 2 AMEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37
Score = 44.1 bits (105), Expect = 9e-07
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 54 VSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
+ G LP GWE+++++DG+I + N ++ DPR+
Sbjct: 3 MEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPRL 38
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 79.2 bits (196), Expect = 3e-17
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTE-KPSAQCIA 178
SN I+TG++ GIG TA A G V + RS ++ + IL Q +
Sbjct: 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 62
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF------SHTEDGFETTFQVNH 232
+ ++ + K+F +++LV NAG D + T ++N
Sbjct: 63 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 122
Query: 233 LAHFYLT 239
A +T
Sbjct: 123 QAVIEMT 129
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 79.1 bits (196), Expect = 3e-17
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+L A+VTG + GIG+ LA G V R+ + ND +++ + A
Sbjct: 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW--RSKGFKVEAS 63
Query: 180 ELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
+L ++ F LNILV NAG+ + +T + + +N A +
Sbjct: 64 VCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAY 123
Query: 237 YLT 239
+L+
Sbjct: 124 HLS 126
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 72.7 bits (179), Expect = 4e-17
Identities = 19/35 (54%), Positives = 22/35 (62%)
Query: 13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
LPPGWE R TA G VY+V+H TQ+T PR
Sbjct: 4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPR 38
Score = 46.5 bits (111), Expect = 1e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
SG LP GWE + G++ F + + +TDPR+
Sbjct: 5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 78.4 bits (194), Expect = 5e-17
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 8/149 (5%)
Query: 104 QKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
+ + L LS+ ++TGA+ +G A L HG RVI++ R+ +
Sbjct: 8 HHHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTE 67
Query: 164 ISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTED 222
+ + A +A+ + + F + + + SL +V NA + D
Sbjct: 68 LRQ-------AGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEAD 120
Query: 223 GFETTFQVNHLAHFYLTLQLENALIKGAK 251
F F V+ LA + + L E L
Sbjct: 121 NFTRMFSVHMLAPYLINLHCEPLLTASEV 149
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 78.3 bits (194), Expect = 5e-17
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L++ AIVTGA GIG A + A G V++ + A + I + + I +
Sbjct: 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI--RQAGGKAIGL 66
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLAHFYL 238
E N+ + + + +F + +LV NAG G F FE F++N + F L
Sbjct: 67 ECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRL 126
Query: 239 T 239
+
Sbjct: 127 S 127
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 78.3 bits (194), Expect = 6e-17
Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTG + GIG+ LA G RV R+ + ++ + +
Sbjct: 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW--REKGLNVEGS 75
Query: 180 ELNLCRLKSVKKFAEEYQKKFR-SLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
+L K + F LNILV NAGV TE + N A +
Sbjct: 76 VCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAY 135
Query: 237 YLT 239
+L+
Sbjct: 136 HLS 138
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 78.2 bits (193), Expect = 6e-17
Identities = 31/172 (18%), Positives = 55/172 (31%), Gaps = 22/172 (12%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLA---LHGCRVILACRSLDKANDAISKILTEKPSA 174
L ++TGA+ G G A LA G ++++ RS ++ ++P
Sbjct: 1 ADGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDL 60
Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFR----SLNILVLNAGVFGLGFSH-----TEDGFE 225
+ + +L V++ ++ R +L+ NA G
Sbjct: 61 KVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVN 120
Query: 226 TTFQVNHLAHFYLTLQLENALIKGAKLF----------ARQQGAATSIYCAT 267
+ +N + LT NA L A Q +YCA
Sbjct: 121 NYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAG 172
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 78.6 bits (194), Expect = 7e-17
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 15/140 (10%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
A+VTG +GIG TA A G R++L+ A++ +
Sbjct: 27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGL--RGQGFDAHG 84
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHF 236
+ ++ L + + A+E + ++++ NAG+ G D + ++
Sbjct: 85 VVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSI 144
Query: 237 YLTLQLENALIKGAKLFARQ 256
+ + F +
Sbjct: 145 H-----------AVEAFLPR 153
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 78.0 bits (193), Expect = 8e-17
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DLS AIVTG + GIG AR+L G V +A + A ++ + A+
Sbjct: 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-----ENGGFAV 63
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
E+++ + SV ++ ++L NAGV T++ ++ F VN F
Sbjct: 64 EVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFL 123
Query: 238 LT 239
Sbjct: 124 AN 125
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 77.1 bits (191), Expect = 9e-17
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 12/122 (9%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ S A+VTGA GIG +T ++L G +V+ R+ + +
Sbjct: 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPV 57
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
++L + +K +++LV NA + + T++ F+ +F VN + F
Sbjct: 58 CVDLGDWDATEKALGGIGP----VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQ 113
Query: 238 LT 239
++
Sbjct: 114 VS 115
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 77.2 bits (191), Expect = 1e-16
Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 5/115 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L N AIVTG IG +LA G RVI+A A A+ + ++
Sbjct: 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL--RMEGHDVSSV 67
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVN 231
+++ +SV+ ++ ++ILV AG+ T+ + +N
Sbjct: 68 VMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDIN 122
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain,
UBL-conjugation pathway, structural GE structural
genomics consortium, SGC, coiled coil; HET: MSE; 1.80A
{Homo sapiens}
Length = 109
Score = 73.5 bits (180), Expect = 1e-16
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKK 52
+D+ ELP GWE + G ++V+H + T + PR ++
Sbjct: 67 ADTRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIPLQN 108
Score = 53.1 bits (127), Expect = 3e-09
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 18 PPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNK 77
+E V ++N + +LP GWE + GK F +
Sbjct: 47 ARNFERYQHNRDLVNFINMFADT--------------RLELPRGWEIKTDQQGKSFFVDH 92
Query: 78 DTHVKTYTDPRI 89
++ T+ DPRI
Sbjct: 93 NSRATTFIDPRI 104
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 77.3 bits (191), Expect = 2e-16
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 4/142 (2%)
Query: 100 LDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDK 159
+ + H + L A VTG ++GIG AR+LA G V R
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKN 60
Query: 160 ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGF 217
+ A+ + ++ V ++F + ILV +AG G
Sbjct: 61 VSAAVDGL--RAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETA 118
Query: 218 SHTEDGFETTFQVNHLAHFYLT 239
+ + N F +T
Sbjct: 119 DLDDALWADVLDTNLTGVFRVT 140
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 76.4 bits (189), Expect = 2e-16
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L ++VTG+ GIG A LA G VI+ S ++A A+++ + K + +
Sbjct: 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERA-KAVAEEIANKYGVKAHGV 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
E+NL +S+ K EE ++ILV NAG+
Sbjct: 63 EMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 76.8 bits (190), Expect = 2e-16
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
LS +VTGA +GIG A G ++ R +A++ + A+ IA+
Sbjct: 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-----EAEAIAV 57
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
++ K+V+ E ++F L+ + AGV L ++ + +E +VN F
Sbjct: 58 VADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFL 117
Query: 238 LT 239
+
Sbjct: 118 VA 119
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 76.5 bits (189), Expect = 2e-16
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
++ A+VTGA GIG A +L L G +V L +L+ + + + + +
Sbjct: 3 HMVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLF 62
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVN 231
++ ++ + ++ + F L+ILV NAGV E +E T Q+N
Sbjct: 63 IQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN------NEKNWEKTLQIN 109
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 76.1 bits (188), Expect = 3e-16
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 10/119 (8%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVIL--ACRSLDKANDAISKILTEKPSAQCIAMELNL 183
+VTG + GIG L ++ RS L EK + + ++
Sbjct: 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKK-----LKEKYGDRFFYVVGDI 59
Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
+K+ K ++ LV NAGV + ++ + +N + L
Sbjct: 60 TEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLV 118
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 76.4 bits (189), Expect = 3e-16
Identities = 17/117 (14%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+++G +G AR A G ++LA R++++ D ++ + +++ ++
Sbjct: 14 VVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQV--TDTGRRALSVGTDITD 71
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
V +E K + +++++ NA + T + ++ L
Sbjct: 72 DAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLI 128
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 76.4 bits (189), Expect = 3e-16
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A+VTGA GIG A L G V +A + A S+I + +A+++++
Sbjct: 5 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI--NQAGGHAVAVKVDVSD 62
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
V E+ +K +++V NAGV S T + + + +N
Sbjct: 63 RDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNIN 110
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 76.4 bits (189), Expect = 3e-16
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
N IVTG N GIG R++A G V + RS A + K+ ++ + A
Sbjct: 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVG-KEFGVKTKAY 69
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
+ ++ V K ++ ++ L+ NAGV T + F + VN F
Sbjct: 70 QCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFN 129
Query: 238 LT 239
Sbjct: 130 TC 131
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 76.5 bits (189), Expect = 3e-16
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ + A++TG+ +GIG AR+LA G ++L ++ + S +
Sbjct: 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLH 80
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
++ + + +F +ILV NAGV + ++ VN + F
Sbjct: 81 HPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSF 140
Query: 237 YLT 239
+
Sbjct: 141 HTI 143
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 76.2 bits (188), Expect = 3e-16
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 125 NAIVTGANTGIGFETARSLAL---HGCRVILACRSLDKANDAISKILTEKPSAQCIAMEL 181
+ ++TG N G+G ++L + CR+ ++A + + + + E+
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHIL--EI 79
Query: 182 NLCRLKSVKKFAEEYQKKF--RSLNILVLNAGVFGLG---FSHTEDGFETTFQVNHLAHF 236
+L + K + + + LN+L NAG+ + T Q N +
Sbjct: 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPI 139
Query: 237 YLTLQLENALIKGAK 251
L L K AK
Sbjct: 140 MLAKACLPLLKKAAK 154
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 76.1 bits (188), Expect = 3e-16
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L A+VTG+ +GIG A +LA G ++L + + L + + +
Sbjct: 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDG 61
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYL 238
+L + ++V+ + ++ ++ILV NAG+ L + ++ +N A F+
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 239 T 239
T
Sbjct: 122 T 122
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 75.6 bits (187), Expect = 4e-16
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 12/122 (9%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L+ +VTGA GIG T ++L G RV+ R+ + + + +
Sbjct: 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPV 57
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFY 237
++L ++ ++ +++LV NA V L T++ F+ +F+VN A
Sbjct: 58 CVDLGDWEATERALGSVGP----VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQ 113
Query: 238 LT 239
++
Sbjct: 114 VS 115
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 70.2 bits (173), Expect = 4e-16
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 17 LPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
LPPGWE RV G +YYV+H T T W P
Sbjct: 7 LPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37
Score = 41.7 bits (99), Expect = 5e-06
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
G LP GWE+ V G+I + + T T+ P +
Sbjct: 5 GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL 38
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
PDB: 2lb2_A*
Length = 36
Score = 69.9 bits (172), Expect = 4e-16
Identities = 18/34 (52%), Positives = 18/34 (52%)
Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPR 47
LP GWEER A G YYVNH T WT P
Sbjct: 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35
Score = 41.4 bits (98), Expect = 7e-06
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
S LP GWE+ G+ + N + T+T P +
Sbjct: 2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPIM 36
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 75.7 bits (187), Expect = 4e-16
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
GR ++TGA++GIG AR + G ++L R +++ L +
Sbjct: 11 GRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER--------LKALNLPNTL 62
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAH 235
++++ + +K + + +V NAG+ LG T + ++ F VN L
Sbjct: 63 CAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGL 122
Query: 236 FYLTLQLENALIKGAKLFARQQG--------AAT------SIYCAT 267
A++ + AR G A + YC T
Sbjct: 123 LNGM----QAVLAP--MKARNCGTIINISSIAGKKTFPDHAAYCGT 162
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR
{} SCOP: k.22.1.1
Length = 37
Score = 69.9 bits (172), Expect = 4e-16
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 16 ELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
LPPGW+E T +G YY NH T+ + WT PR
Sbjct: 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35
Score = 44.5 bits (106), Expect = 6e-07
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
S LP GW++ + +GK +YN +T T+TDPR+
Sbjct: 1 SMGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 75.6 bits (187), Expect = 4e-16
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL ++TG++TG+G A A +V++ RS + +++ + + + + IA+
Sbjct: 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-GGEAIAV 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
+ ++ V + K+F L++++ NAG+ SH + + N F
Sbjct: 63 KGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFL 122
Query: 238 LT 239
+
Sbjct: 123 GS 124
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 75.7 bits (187), Expect = 5e-16
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL ++TG++ GIG TAR A G +V L R D +
Sbjct: 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASM-RADGGDAAFF 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHF 236
+L ++ ++ +E+ KF +++L+ NAG + ++ N +
Sbjct: 63 AADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVV 122
Query: 237 YLT 239
T
Sbjct: 123 MTT 125
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 75.2 bits (186), Expect = 5e-16
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L+ A+VTGA+ GIGFE A +LA G V+ S A + + ++ + +
Sbjct: 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSM--KEKGFKARGL 59
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
LN+ ++S++ F E + + +++ILV NAG+
Sbjct: 60 VLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 70.0 bits (172), Expect = 5e-16
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
S LPPGW+ ++ G YYVN T T W P +
Sbjct: 2 SSGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPR 88
S LP GW+ +S G+ + N T+ T+ P
Sbjct: 5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPS 38
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 75.8 bits (187), Expect = 6e-16
Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 16/153 (10%)
Query: 103 RQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND 162
+ H + + G + A+VTGA IG A L G RV++ + +A
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAV 62
Query: 163 AISKILTEKPSAQCIAMELNLCRLK----SVKKFAEEYQKKFRSLNILVLNAGVF----- 213
+++ L ++ S + + +L S ++ + F ++LV NA F
Sbjct: 63 SLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPL 122
Query: 214 -------GLGFSHTEDGFETTFQVNHLAHFYLT 239
E N +A F LT
Sbjct: 123 VQGDHEDNSNGKTVETQVAELIGTNAIAPFLLT 155
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 75.2 bits (186), Expect = 6e-16
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ L +A++TG+ GIG A + G V +A +++A A ++I A
Sbjct: 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI-----GPAAYA 58
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+++++ R S+ + L+ILV NA +F L T + +E F +N
Sbjct: 59 VQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAIN 113
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 75.7 bits (187), Expect = 6e-16
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L+ A+VTGA +GIG A A G V+ R+ D + +I A+
Sbjct: 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI--ADGGGSAEAV 84
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
+L L+ AEE R +++LV NAG+ + + VN A +
Sbjct: 85 VADLADLEGAANVAEEL-AATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWV 143
Query: 238 LT 239
L+
Sbjct: 144 LS 145
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 75.2 bits (186), Expect = 7e-16
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 7/124 (5%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
N IVTG+ GIG A +LA G V++A + + A +I I++
Sbjct: 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI--VADGGTAISVA 64
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF-----GLGFSHTEDGFETTFQVNHLAH 235
+++ +S K A+ +F ++ LV NA +F + + ++ VN
Sbjct: 65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGA 124
Query: 236 FYLT 239
+ T
Sbjct: 125 LWCT 128
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 74.9 bits (185), Expect = 7e-16
Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 28/158 (17%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
++TGA+ GIG TAR L G RV L R + +++ + + ++
Sbjct: 8 VLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL------EGALPLPGDVRE 61
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQLE 243
+ ++ F L+ LV NAGV + H + + N F
Sbjct: 62 EGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGI---- 117
Query: 244 NALIKGAKLFARQQG--------AAT------SIYCAT 267
+ L R G A + Y A+
Sbjct: 118 RHAVPA--LLRRGGGTIVNVGSLAGKNPFKGGAAYNAS 153
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 75.0 bits (185), Expect = 8e-16
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 5/116 (4%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
V GA IG E A+ A G V R+ +K +++I E + +A L+
Sbjct: 10 VAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEI--EAAGGRIVARSLDARN 67
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLT 239
V F L + + N G T+ F +++ A F
Sbjct: 68 EDEVTAFLNA-ADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSG 122
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 74.8 bits (185), Expect = 1e-15
Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L +VTG GIG A G + R+ + N+ +SK +K Q
Sbjct: 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW--QKKGFQVTGS 68
Query: 180 ELNLCRLKSVKKFAEEYQKKF-RSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
+ +K + F L+IL+ N G +T + F N + +
Sbjct: 69 VCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAY 128
Query: 237 YLT 239
+L+
Sbjct: 129 HLS 131
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 75.0 bits (185), Expect = 1e-15
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ A+VTGA +GIG E AR L G RV + R + K L E +
Sbjct: 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGL-RTTLKELREA-GVEADGR 76
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
++ + ++ +++ +++LV NAG G ++ + + N F
Sbjct: 77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFR 136
Query: 238 LT 239
+T
Sbjct: 137 VT 138
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 74.4 bits (184), Expect = 1e-15
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L AIVTG++ G+G A L G ++L + DA ++ +
Sbjct: 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA-GINVVVA 60
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
+ ++ + V+ + F ++ILV NAG+
Sbjct: 61 KGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 74.5 bits (184), Expect = 1e-15
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 117 HGRDLSNYNAIVTGA-NTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQ 175
HG L +VT A TGIG TAR L G V+++ + + ++ + +
Sbjct: 17 HGL-LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL-ADLGLGR 74
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
A+ ++ ++V + +K L++LV NAG+ G T++ ++ V
Sbjct: 75 VEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVT 132
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 74.5 bits (184), Expect = 1e-15
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
++TG +G+G TA LA G ++ L S + + + +L P A+ + ++
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD 75
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVN 231
V+ + ++F ++ NAG+ G S T F+ +N
Sbjct: 76 EAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSIN 124
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 74.1 bits (183), Expect = 1e-15
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
++TGA+ GIG R+ RV+ RS+ + D +
Sbjct: 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD-----------PDIHTV 73
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
++ + ++ + E ++F ++ LV NAGVF T++ ++ VN F+
Sbjct: 74 AGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFH 133
Query: 238 LT 239
+T
Sbjct: 134 IT 135
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 74.2 bits (183), Expect = 1e-15
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 11/123 (8%)
Query: 126 AIVTGANTGIGFETARSLALHGCR-------VILACRSLDKANDAISKILTEKPSAQCIA 178
++TGA GIG A A ++L+ R+ + A
Sbjct: 5 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC--RAEGALTDT 62
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHF 236
+ ++ + V++ +++ ++ LV NAGV FG TE+ F+ T N F
Sbjct: 63 ITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTF 122
Query: 237 YLT 239
+LT
Sbjct: 123 FLT 125
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 74.5 bits (184), Expect = 1e-15
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
N A+VTGA GIG E A+ LA VI R+ + + +I + +
Sbjct: 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI--KSFGYESSGY 98
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
++ + + + + + + ++++ILV NAG+
Sbjct: 99 AGDVSKKEEISEVINKILTEHKNVDILVNNAGI 131
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 74.1 bits (183), Expect = 2e-15
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 7/121 (5%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L+ A+VTGA GIG A LA G VI++ + + A A + I + A+
Sbjct: 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI-----GKKARAIA 58
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYL 238
++ SVK E Q ++ILV NA + F D + VN F +
Sbjct: 59 ADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIV 118
Query: 239 T 239
T
Sbjct: 119 T 119
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21,
WBP4, metal- binding, mRNA processing, mRNA splicing,
nucleus, polymorphism; NMR {Homo sapiens}
Length = 75
Score = 69.7 bits (170), Expect = 2e-15
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 15 DELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITF 74
D W E +T++G YY + + +QW P + W + +SEDG +
Sbjct: 1 DPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYY 60
Query: 75 YNKDTHVKTYTDP 87
YN +T + P
Sbjct: 61 YNTETGESRWEKP 73
Score = 39.6 bits (92), Expect = 7e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 5 NVALPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
+ + W E ++ DG YY N T ++W P
Sbjct: 32 PEGFQGDLKKTAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73
Score = 31.2 bits (70), Expect = 0.069
Identities = 5/53 (9%), Positives = 16/53 (30%)
Query: 58 LPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHST 110
W + ++ +G +Y+ + + P +K + +
Sbjct: 3 SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSED 55
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 74.1 bits (183), Expect = 2e-15
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L+ A+VTGA GIG AR G V L DK + + +
Sbjct: 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL-----GKDVFVF 78
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
NL KS+K+ AE +++ ++ILV NAG+
Sbjct: 79 SANLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 73.7 bits (182), Expect = 2e-15
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+L A+VTGA+ GIG A LA G +VI S A + M
Sbjct: 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL-----GDNGKGM 60
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
LN+ +S++ + +F ++ILV NAG+
Sbjct: 61 ALNVTNPESIEAVLKAITDEFGGVDILVNNAGI 93
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 73.7 bits (182), Expect = 2e-15
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ L N IVTGA +GIG A+ AL+ V+ D+ N + ++ + +
Sbjct: 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQEL--RGMGKEVLG 60
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVN 231
++ ++ + K V++F + + +++L NAG+ +++ +E VN
Sbjct: 61 VKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVN 116
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 73.7 bits (182), Expect = 2e-15
Identities = 24/124 (19%), Positives = 49/124 (39%), Gaps = 5/124 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+A++T G+G + L G V + S A + + + + + +
Sbjct: 4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-EERLQFV 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAH 235
+ ++ + + + K EE F ++ L+ NAG + + ED + Q N A
Sbjct: 63 QADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAV 122
Query: 236 FYLT 239
F+L
Sbjct: 123 FHLL 126
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 73.7 bits (182), Expect = 3e-15
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 10/128 (7%)
Query: 115 ILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPS 173
+ + A+VTG++ G+G A LA +G +++ RS A + +I EK
Sbjct: 1 MEQNK-----CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEI--EKLG 53
Query: 174 AQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 231
+ + ++ N+ + +K+ ++ + F L++ V NA E ++ T +N
Sbjct: 54 VKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNIN 113
Query: 232 HLAHFYLT 239
A +
Sbjct: 114 AKALLFCA 121
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 73.3 bits (181), Expect = 3e-15
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 14/122 (11%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
D S N VTGA GIG+ TA + G +V ++ +
Sbjct: 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPF------------ATE 51
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
+++ V + + + L+ LV AG+ G +++ ++ TF VN F
Sbjct: 52 VMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFN 111
Query: 238 LT 239
L
Sbjct: 112 LF 113
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 73.7 bits (182), Expect = 3e-15
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L AIVTGA+ GIG A LA G VI + A + ++ +
Sbjct: 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF--KQAGLEGRGA 82
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
LN+ +V E K+F +LN+LV NAG+
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNAGI 115
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 73.4 bits (181), Expect = 4e-15
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A VTG++ GIG+ A + A G V + S A + A
Sbjct: 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ--KTYGVHSKAY 88
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV----FGLGFSHTEDGFETTFQVNHLAH 235
+ N+ KSV++ + +K F ++++ V NAGV D + V+
Sbjct: 89 KCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGV 148
Query: 236 FYLT 239
+Y +
Sbjct: 149 YYCS 152
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 72.9 bits (180), Expect = 4e-15
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVIL---ACRSLDKANDAISKILTEKPSAQ 175
DL N ++ G +G TA++ AL ++L + D AN ++ E A+
Sbjct: 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDEL--EDQGAK 64
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHL 233
+ +L + V K + +K+F ++I + G +E F+ +N+
Sbjct: 65 VALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNK 124
Query: 234 AHFYLT 239
++
Sbjct: 125 VAYFFI 130
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 72.9 bits (180), Expect = 4e-15
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 6/113 (5%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L + A++TG GIG A A+ G + +A L A +A + I + + ++
Sbjct: 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIA--DLVPAPEAEAAI--RNLGRRVLTVK 60
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
++ + V+ F ++ F +ILV NAG++ T + ++ TF++N
Sbjct: 61 CDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEIN 113
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 73.0 bits (180), Expect = 4e-15
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
AIVTGA +G+G A +LA G V LA R LD + ++I + +
Sbjct: 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI-----GDDALCV 79
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVNHLAHF 236
++ SV+ +KF +++L NAG T ++ N F
Sbjct: 80 PTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPF 139
Query: 237 YLT 239
T
Sbjct: 140 LCT 142
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 73.0 bits (180), Expect = 5e-15
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCI 177
+ L+ A+ TGA GIG A L G V++ S A + ++++ +K AQ +
Sbjct: 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL--KKLGAQGV 74
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAH 235
A++ ++ + V ++ F L+ ++ N+G+ + T++ F+ F +N
Sbjct: 75 AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQ 134
Query: 236 FYLT 239
F++
Sbjct: 135 FFVA 138
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 72.6 bits (179), Expect = 6e-15
Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 17/162 (10%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTGA+ GIG A+ LA G V + ++A + + +I + ++
Sbjct: 5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI--QSNGGSAFSI 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRS------LNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
NL L V+ + ++ +IL+ NAG+ F TE F+ VN
Sbjct: 63 GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN 122
Query: 232 HLAHFYLTLQLENALIKGAK------LFARQQGAATSIYCAT 267
A F++ Q + L ++ R Y T
Sbjct: 123 AKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMT 164
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 72.7 bits (179), Expect = 6e-15
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
A+VTG TG+G A++L+ G V++ R D + A +I + A+
Sbjct: 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI-GGRTGNIVRAV 88
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
++ V + +F L++LV NAG T + + N
Sbjct: 89 VCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAAN 143
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 72.2 bits (178), Expect = 7e-15
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKILTEKPSAQCIAMELNL 183
A+VTG GIG + LA G + +A + ++A + I I E + + + L++
Sbjct: 5 AMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLI--EAADQKAVFVGLDV 62
Query: 184 CRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
+ +E +K ++LV NAG+ TE+ + + VN
Sbjct: 63 TDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVN 112
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 72.2 bits (178), Expect = 7e-15
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+VTGA IG TA LA G + L + + A + + + + + ++
Sbjct: 10 CLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV--REKGVEARSYVCDVTS 67
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
++V + + F ++ L NAG G + D F +N
Sbjct: 68 EEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTIN 116
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 72.2 bits (178), Expect = 8e-15
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A VTGA +GIG E R+ A G R+IL R + A ++ +A +
Sbjct: 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG----AAVAARI 63
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
++ +++ A E + ++ILV +AG+ + + VN F+
Sbjct: 64 VADVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFW 122
Query: 238 LT 239
+
Sbjct: 123 AS 124
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 71.8 bits (177), Expect = 8e-15
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 25/155 (16%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
++TGA++G+G E A+ G L RS K + +T S +L
Sbjct: 4 IVITGASSGLGAELAKLYDAEGKATYLTGRSESKLST-----VTNCLSNNVGYRARDLAS 58
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNHLAHFYLTLQLE 243
+ V++ E+ + +V +AG G + +T + N + +
Sbjct: 59 HQEVEQLFEQ---LDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVL---- 111
Query: 244 NALIKG-----------AKLFARQQGAATSIYCAT 267
L+K A+Q A S YCA
Sbjct: 112 RELVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAV 146
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 72.6 bits (179), Expect = 8e-15
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA-QCIA 178
+ +VTG +GIG A L G V++ R+ DK A+ ++ +
Sbjct: 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRY 67
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAH 235
++ + + L+ +V AG G + + T +N
Sbjct: 68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGT 127
Query: 236 FYLT 239
Y+
Sbjct: 128 MYVL 131
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 72.2 bits (178), Expect = 8e-15
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILAC-RSLDKANDAISKILTEKPSAQCIAM 179
+N AIVTGA+ GIG A LA G V++ A + KI E + +
Sbjct: 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKI--EAAGGKALTA 82
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
+ ++ +V++ ++ F +++LV NAG+ L + F+ VN F
Sbjct: 83 QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFN 142
Query: 238 LT 239
Sbjct: 143 TL 144
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 71.8 bits (177), Expect = 9e-15
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 8/119 (6%)
Query: 123 NYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELN 182
N IVTG GIG + G +V ++ D + +
Sbjct: 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER------PNLFYFHGD 55
Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLT 239
+ ++KKF E +K + +++LV NA G+ S + F+ V A + L+
Sbjct: 56 VADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELS 114
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 72.2 bits (178), Expect = 1e-14
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ + A++TGA +GIG TA +LA G V R+ + + +I Q IA+
Sbjct: 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEI--VGAGGQAIAL 82
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQVN 231
E ++ ++ + KF L+I+V NAG+ G+ ++ T VN
Sbjct: 83 EADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVN 137
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 71.4 bits (176), Expect = 1e-14
Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
R L AI+TG GIG A G +V++ R D A + Q
Sbjct: 2 NR-LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV---GTPDQIQ 57
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+ + K + +K F ++ LV NAG+ T + VN
Sbjct: 58 FFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVN 113
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 71.8 bits (177), Expect = 1e-14
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DLS I+TG G+G E AR G RV+LA ++ ++
Sbjct: 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL-----GDAARYQ 56
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
L++ + ++ +++F S++ LV NAG+ F + + F ++N
Sbjct: 57 HLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEIN 110
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 71.8 bits (177), Expect = 1e-14
Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 120 DLSNYNAIVTGANT--GIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
L +VTGA+ G+G E AR A G V + S + + K L + +
Sbjct: 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAK 76
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
A + + +S +K ++ F ++ + NAG + + + QV+
Sbjct: 77 AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVD 132
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 71.4 bits (176), Expect = 1e-14
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI-----LTEKPSAQ 175
L + A+VTGA +GIG + LA G V A + + + P
Sbjct: 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGN 64
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKF-RSLNILVLNAGVFGLGFSHTEDGF 224
A + ++ ++ + E+ Q F R +++V AG+ T+D F
Sbjct: 65 HAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGI-------TQDEF 107
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 71.4 bits (176), Expect = 1e-14
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A++TGA +G G A+ A G +V++ R A +I +A+
Sbjct: 6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI-----GDAALAV 60
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
++ + V E KF ++ILV NAG+ + + F+ VN
Sbjct: 61 AADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVN 115
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 71.4 bits (176), Expect = 2e-14
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL+ IVTG +GIG TA A +G V++A + D A ++I ++ +
Sbjct: 24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI-----GSKAFGV 78
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+++ K + E+ K+ +++LV NAG G E+ ++ VN
Sbjct: 79 RVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVN 132
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 71.5 bits (176), Expect = 2e-14
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTGA GIG E A L GC+VI+ S + A + ++ I +K + +
Sbjct: 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAI--KKNGSDAACV 84
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
+ N+ ++ + + EE K F L+I+ N+GV G T + F+ F +N F+
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144
Query: 238 LT 239
+
Sbjct: 145 VA 146
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 71.1 bits (175), Expect = 2e-14
Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 12/126 (9%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L+ A++TG +G+G G RV + +S ++ + + +
Sbjct: 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH-----GGNAVGVV 57
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS-------HTEDGFETTFQVNHL 233
++ L+ K+ AE F ++ L+ NAG++ + + F+ F VN
Sbjct: 58 GDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVK 117
Query: 234 AHFYLT 239
+ +
Sbjct: 118 GYIHAV 123
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 70.6 bits (174), Expect = 3e-14
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
AIVTGA++G G A G RV S + + + + + ++
Sbjct: 5 AIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA-DKVLRVRADVAD 63
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH-----TEDGFETTFQVN 231
V ++F ++++LV NAG+ G + + F+ VN
Sbjct: 64 EGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVN 114
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis;
NMR {Homo sapiens}
Length = 54
Score = 65.6 bits (160), Expect = 3e-14
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 14 EDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLP 59
+LP GWE+ +G V++V+H + T + PR + P
Sbjct: 9 AGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDNPTKP 54
Score = 62.1 bits (151), Expect = 4e-13
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 48 TGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEK 96
+ +K+V+GDLP GWE+ E+G++ F + TY DPR+ F ++
Sbjct: 2 SAKRKRVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLAFTVDDN 50
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 70.6 bits (174), Expect = 3e-14
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 19/122 (15%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ + +V A+ GIG A L+ G V + R+ + +
Sbjct: 16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS--------------GH 61
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFY 237
+C ++K + +K + ++ILVLNAG G T + F+ L
Sbjct: 62 RYVVC---DLRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIK 118
Query: 238 LT 239
+
Sbjct: 119 IV 120
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 70.6 bits (174), Expect = 3e-14
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A+VTG +G+G E + L G +V + + +++ + + + ++
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL-----GERSMFVRHDVSS 63
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
Q++ +LN+LV NAG+ G + F ++N
Sbjct: 64 EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKIN 111
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 70.7 bits (174), Expect = 3e-14
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L++ A+VTGA+ GIG A LA G +V + S A D + + + A+
Sbjct: 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA-GGEAFAV 83
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
+ ++ + V+ +++ L++LV NAG+
Sbjct: 84 KADVSQESEVEALFAAVIERWGRLDVLVNNAGI 116
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 70.3 bits (173), Expect = 3e-14
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 106 YDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
H L R + + +VTG N GIG AR+ A G +V + RS
Sbjct: 4 SHHHHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRS--------- 54
Query: 166 KILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG-- 223
+P +A++ ++ + V++ +E ++ + +L+ NAGV T+D
Sbjct: 55 ----GEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV-------TKDQLL 103
Query: 224 -------FETTFQVNHLAHFYLT 239
F + + N F +
Sbjct: 104 MRMSEEDFTSVVETNLTGTFRVV 126
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 70.7 bits (174), Expect = 3e-14
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 100 LDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLD 158
L Y S L G+ A VTG + GIG A+ LAL G V L + +
Sbjct: 13 LGTENLYFQSMMTSISLAGK-----TAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE 67
Query: 159 KANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF- 217
+A +S+I E+ + +A+ + +++++ E + L+ILV +AG++
Sbjct: 68 RAQAVVSEI--EQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPL 125
Query: 218 -SHTEDGFETTFQVNHLAHFYLT 239
T F+ VN A F
Sbjct: 126 EETTVADFDEVMAVNFRAPFVAI 148
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 70.2 bits (173), Expect = 3e-14
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L A+VTGA+ GIG A LA G V++ ++ + + + + + IA+
Sbjct: 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-GSDAIAVR 60
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
++ + V ++ F ++ILV NAGV
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 70.0 bits (172), Expect = 4e-14
Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 17/137 (12%)
Query: 106 YDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAIS 165
+ H + ++ + N +V G + +G E + I + D
Sbjct: 5 HHHHHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADH-- 62
Query: 166 KILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTED 222
+ + + +K E+ K ++ V AG + G +
Sbjct: 63 ------------SFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLK 110
Query: 223 GFETTFQVNHLAHFYLT 239
+ +N + F
Sbjct: 111 SVKGMIDMNLYSAFASA 127
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 70.3 bits (173), Expect = 4e-14
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTG+ GIG A L G +V++ S A +S+I + + IA+
Sbjct: 16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEI--KALGSDAIAI 73
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFY 237
+ ++ ++ + K ++ F L+I V N+GV G TE+ F+ F +N F+
Sbjct: 74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133
Query: 238 LT 239
+
Sbjct: 134 VA 135
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 69.8 bits (172), Expect = 4e-14
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L + ++TGA GIG T A G R++ +A + +
Sbjct: 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPV 54
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
+++ SV++ E L+ +V AG+ + + +E +VN F
Sbjct: 55 VMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFL 114
Query: 238 LT 239
+
Sbjct: 115 VA 116
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 69.9 bits (172), Expect = 5e-14
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A+V+G G+G R++ G +V+ ++ +++ + + L++ +
Sbjct: 10 ALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-----ADAARYVHLDVTQ 64
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
K + F L++LV NAG+ +G ++ VN
Sbjct: 65 PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVN 112
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 69.4 bits (171), Expect = 6e-14
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+A+VTGA+ GIG A LA G V + + +A+ + + K A++
Sbjct: 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK-GVDSFAIQ 60
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
N+ VK +E +F SL++LV NAG+
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI 92
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 69.9 bits (172), Expect = 6e-14
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 6/115 (5%)
Query: 98 NPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSL 157
+ + + + R A VTG G+G +R L G V ++
Sbjct: 5 HHHHMGTLEAQTQGPGSMQAKR-----VAFVTGGMGGLGAAISRRLHDAGMAVAVSHSER 59
Query: 158 DKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
+ + A +++ +S ++ AE+ F +++L+ NAG+
Sbjct: 60 NDHVSTWLMHERDAG-RDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI 113
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 69.9 bits (172), Expect = 6e-14
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
DL+ AIVTGA GIG AR LA GC V+ A D A+ A +KI A
Sbjct: 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI-----GCGAAA 79
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+++ + + + F ++ LV NAGV L T + F+ +N
Sbjct: 80 CRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAIN 134
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 69.5 bits (171), Expect = 7e-14
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+L N AI+TGA GIG ET+R LA G RV+LA A + + +
Sbjct: 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV-----GRGAVHH 62
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVN 231
++L SV+ + F L+I+ NA T D ++ TF VN
Sbjct: 63 VVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVN 118
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 69.9 bits (172), Expect = 7e-14
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%)
Query: 99 PLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLD 158
P + Y S + L + A+VTG ++GIG A + A G V + +
Sbjct: 34 PDCGEKSYVGSGR---------LKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAE 84
Query: 159 K--ANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 216
+ A + I E+ + + + +L + + ++ L+IL L AG
Sbjct: 85 EEDAQQVKALI--EECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGK---Q 139
Query: 217 FSH------TEDGFETTFQVNHLAHFYLT 239
+ T + F+ TF VN A F++T
Sbjct: 140 TAIPEIKDLTSEQFQQTFAVNVFALFWIT 168
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 69.9 bits (172), Expect = 7e-14
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 117 HGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQ 175
+ L N ++TG ++GIG + + A G + +A AN+ + EK +
Sbjct: 42 SEK-LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYV--EKEGVK 98
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH---TEDGFETTFQVNH 232
C+ + +L + K +E ++ SLNILV N T + E TF++N
Sbjct: 99 CVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINI 158
Query: 233 LAHFYLT 239
++F++T
Sbjct: 159 FSYFHVT 165
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 70.2 bits (172), Expect = 7e-14
Identities = 26/127 (20%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT-----EKPSA 174
L+ +TGA+ GIG A A G +++A ++ + I T E
Sbjct: 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGG 101
Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 232
+ + +++ + + E+ KKF ++ILV NA L + + VN
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161
Query: 233 LAHFYLT 239
+ +
Sbjct: 162 RGTYLAS 168
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 69.6 bits (171), Expect = 8e-14
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 17/137 (12%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
A++TG IG A L G RV++ R + A + L + +
Sbjct: 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLC 67
Query: 180 ELNLCRLKSVKKFAE----EYQKKFRSLNILVLNAGVFGLG-------------FSHTED 222
+ +L S+ E + F ++LV NA + +
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 223 GFETTFQVNHLAHFYLT 239
F N +A +L
Sbjct: 128 QVAELFGSNAVAPLFLI 144
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 69.1 bits (170), Expect = 8e-14
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 11/117 (9%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
AIVT G +A L+ G V S + D + +L
Sbjct: 4 AIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQK-DELEAFAET-------YPQLKPMS 55
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLAHFYLT 239
+ + E + +++LV N F + + + + + F L
Sbjct: 56 EQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALV 112
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 69.2 bits (170), Expect = 9e-14
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ AIVTG GIG AR+LA G + + + + L+ A+ I +
Sbjct: 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL-GARVIFL 84
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVNHLAH 235
+L L S + + +F ++ LV NAG+ + + F+T VN
Sbjct: 85 RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGT 144
Query: 236 FYLT 239
+ T
Sbjct: 145 VFFT 148
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 68.8 bits (169), Expect = 1e-13
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ A++TG +G+G TA L G +L K+ C+
Sbjct: 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL-----GNNCVFA 63
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--------FGLGFSHTEDGFETTFQVN 231
++ K V+ + KF +++ V AG+ G +HT + F+ VN
Sbjct: 64 PADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVN 123
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 68.7 bits (169), Expect = 1e-13
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+S A VTG GIG + L G RV+ C + A
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL-GFDFYAS 68
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
E N+ S K+ ++ + + +++LV NAG+
Sbjct: 69 EGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI 101
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 68.3 bits (168), Expect = 1e-13
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 13/119 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A+VT A G +L G V+ S A + E P +A +
Sbjct: 4 ALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFES-ENPGTIALAEQ----- 57
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF-----SHTEDGFETTFQVNHLAHFYLT 239
++ + + +++ +V N + +E F+ + L
Sbjct: 58 --KPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLL 114
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 68.4 bits (168), Expect = 1e-13
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 11/122 (9%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L A+VTGA G+G E + L+ L R+ + A+++I +
Sbjct: 2 SLKKKIAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHL-AALAEIE------GVEPI 53
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFY 237
E ++ + + ++ K ++ LV A V + + +N +
Sbjct: 54 ESDIVKEVLEEGGVDK-LKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAE 112
Query: 238 LT 239
L+
Sbjct: 113 LS 114
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 68.8 bits (169), Expect = 2e-13
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 7/127 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT-----EKPSA 174
L ++G + GIG A+ +A G V L +S + I T E+
Sbjct: 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGG 65
Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 232
Q + + ++ +V + ++F ++I V NA LG F+ +
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 233 LAHFYLT 239
+ ++
Sbjct: 126 RGTYAVS 132
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 68.3 bits (168), Expect = 2e-13
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ + +VTG N GIG A+ LA G +V + R +
Sbjct: 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG-------------SGAPKGLFGV 58
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFY 237
E+++ +V + ++ + +LV NAG+ TE+ FE N F
Sbjct: 59 EVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFR 118
Query: 238 LT 239
+
Sbjct: 119 VA 120
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 67.9 bits (167), Expect = 2e-13
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+VTGA+ GIG A SL GC+V++ KA + +SK + Q I ++ +
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY-GGQAITFGGDVSK 62
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV 212
V+ + + +++++V NAG+
Sbjct: 63 EADVEAMMKTAIDAWGTIDVVVNNAGI 89
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 67.9 bits (167), Expect = 2e-13
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A+VTG + GIG A +L G RV +A R+ ++A + + + +L +
Sbjct: 5 ALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQS----------LGAVPLPTDLEK 54
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLT 239
K + + L++LV A V + + + ++ F L
Sbjct: 55 -DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLA 109
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 68.0 bits (167), Expect = 3e-13
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 7/127 (5%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILT-----EKPSA 174
LS +TGA+ GIG A A G V +A +S I +
Sbjct: 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGG 62
Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 232
Q +A++ ++ V+ F ++ILV NA L + F+ QVN
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 233 LAHFYLT 239
F
Sbjct: 123 RGSFVCA 129
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 68.0 bits (167), Expect = 3e-13
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
AIVTGA++GIG A A G +V++ R+ + + +I + A+ ++
Sbjct: 11 AIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEI--AGGGGEAAALAGDVGD 68
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
+ E ++F L+ NAG G + +G+ T N
Sbjct: 69 EALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTN 117
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 67.5 bits (166), Expect = 3e-13
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL+ +++TGA++GIG AR L G +VI++ + +K + +
Sbjct: 11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIE 65
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 212
NL + + +L+ILV NAG+
Sbjct: 66 VCNLANKEECSNLISK----TSNLDILVCNAGI 94
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 67.6 bits (166), Expect = 3e-13
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 11/118 (9%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
L + IVTGA++G+G R LA G V+ + +++ A
Sbjct: 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----GAAVRFR 58
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETTFQVN 231
++ +++F ++ LV AG G H D F T VN
Sbjct: 59 NADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVN 116
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 67.2 bits (165), Expect = 3e-13
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 6/121 (4%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
L A+VTG+ +GIG A+ LA G ++L A+++I + + +
Sbjct: 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLN--GFGDPAPALAEI--ARHGVKAVHHP 57
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNHLAHFYL 238
+L + ++ +++F ++ILV NAG+ + + ++ +N A F+
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHG 117
Query: 239 T 239
T
Sbjct: 118 T 118
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 49
Score = 62.2 bits (151), Expect = 3e-13
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 13 SEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
+ LPPGWE +++ YYV+H + Q+ HP
Sbjct: 10 EREGLPPGWERVESSEFGTYYVDHTNKRAQYRHP 43
Score = 36.8 bits (85), Expect = 4e-04
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 41 TQWTHPRTGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRI 89
+ + P LP GWE+ S + + + Y P
Sbjct: 3 SGSSGPLE------REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 67.1 bits (165), Expect = 4e-13
Identities = 20/88 (22%), Positives = 38/88 (43%)
Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
A++TGA+ GIG A LA G + + + + +++ + S + NL
Sbjct: 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLL 62
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGV 212
++ + + L+ LV NAG+
Sbjct: 63 EAEAATALVHQAAEVLGGLDTLVNNAGI 90
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 66.8 bits (164), Expect = 5e-13
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 125 NAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLC 184
N +VTG + GIG L + ++ + ++ +L
Sbjct: 6 NYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA-----------ENLKFIKADLT 54
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+ + + + K S + + LNAG+ G + + +N
Sbjct: 55 KQQDITNVLDI--IKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLN 101
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 67.2 bits (165), Expect = 5e-13
Identities = 31/139 (22%), Positives = 47/139 (33%), Gaps = 15/139 (10%)
Query: 103 RQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND 162
D T+ L + A+VTGA GIG +L G RV +A R++
Sbjct: 8 SSGVDLGTENLYFQSMQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA 67
Query: 163 AISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHT 220
+ + +L L+I+V NAGV G T
Sbjct: 68 D-------------LHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETT 114
Query: 221 EDGFETTFQVNHLAHFYLT 239
+ + + VN A F +
Sbjct: 115 DADWSLSLGVNVEAPFRIC 133
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 67.2 bits (165), Expect = 5e-13
Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+VTG GIG R+ G RV++ + ++ + + ++ +
Sbjct: 12 VVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQ 65
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
VK E ++F L+ +V NAG + GF ++N
Sbjct: 66 EDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELN 114
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 66.5 bits (163), Expect = 7e-13
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
++ +VTGA+ GIG A L G V + R LD + + QC+ +
Sbjct: 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA--QSLGGQCVPVV 60
Query: 181 LNLCRLKSVKKFAEEYQK-KFRSLNILVLNAGVFGLGFSHTEDG---------FETTFQV 230
+ + V+ E+ + + L++LV NA +T + ++ V
Sbjct: 61 CDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNV 120
Query: 231 NHLAHFYLT 239
H++ +
Sbjct: 121 GLRGHYFCS 129
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 65.0 bits (159), Expect = 1e-12
Identities = 19/150 (12%), Positives = 38/150 (25%), Gaps = 32/150 (21%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
++ GA+ +G L VI A R + +++
Sbjct: 6 ILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-------------------DVTVDITN 45
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAHFYLTLQLE 243
+ S+KK E+ ++ +V G T + T L L
Sbjct: 46 IDSIKKMYEQ----VGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGI 101
Query: 244 NALIKGAK------LFARQQGAATSIYCAT 267
++L + +
Sbjct: 102 DSLNDKGSFTLTTGIMMEDPIVQGASAAMA 131
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 66.0 bits (162), Expect = 1e-12
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 6/125 (4%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCI 177
+ +N +V GA IG A A G V+L + + A A+++I EK +
Sbjct: 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEI--EKLGRSAL 61
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQVNHLA 234
A++ +L V+ KF ++ LV AG E + VN +
Sbjct: 62 AIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTS 121
Query: 235 HFYLT 239
F
Sbjct: 122 LFLTA 126
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 66.0 bits (162), Expect = 1e-12
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
DL + IVTGA+ GIG A G +VI + + A+ +
Sbjct: 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDL----S---------IHDPGEAKYDHI 51
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
E ++ VK + K++ S+++LV NAG+ G + + VN
Sbjct: 52 ECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVN 105
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 66.2 bits (162), Expect = 1e-12
Identities = 24/119 (20%), Positives = 40/119 (33%), Gaps = 12/119 (10%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+AIV+G G+G T R L G V++A + +K ++ + +
Sbjct: 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL-----GNRAEFV 81
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFETTFQVN 231
N+ SV E + R +V + G G GF T +
Sbjct: 82 STNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLY 140
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 66.0 bits (162), Expect = 1e-12
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 7/110 (6%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
AI+TG GIG TA+ +G +V++A + D + I + ++ +
Sbjct: 19 AIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI---GSPDVISFVHCDVTK 75
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQVN 231
+ V+ + K L+I+ N GV + F+ +N
Sbjct: 76 DEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDIN 125
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 64.9 bits (159), Expect = 3e-12
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ ++ AIVTG ++GIG +L +G +V+ +
Sbjct: 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHF----------- 58
Query: 179 MELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
++++ + VK+ E+ KK+ ++ILV NAG+ H + + VN
Sbjct: 59 -KIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVN 112
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 63.0 bits (154), Expect = 7e-12
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
++TGA G+G AR AL G ++L+ R + L + A+ + +L
Sbjct: 3 VLITGATGGLGGAFAR--ALKGHDLLLSGRRAGALAE-----LAREVGARALP--ADLAD 53
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHT-EDGFETTFQVN 231
K EE L++LV G G D E +
Sbjct: 54 ELEAKALLEE----AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAH 97
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 63.5 bits (155), Expect = 1e-11
Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 33/153 (21%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ A+VTGA +G A L G V L +A+S L + I +
Sbjct: 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITV 65
Query: 180 ELNLCR-----------------LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHT 220
+ +L + + ++LV NA F +
Sbjct: 66 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND 125
Query: 221 EDGFETT--------------FQVNHLAHFYLT 239
EDG E F N +A ++L
Sbjct: 126 EDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 62.9 bits (154), Expect = 1e-11
Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 10/113 (8%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+ +VTG GIG A++ A G V L + + I +
Sbjct: 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEAI-------GGAFFQ 55
Query: 181 LNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
++L + +F EE +++LV NA + G + + +VN
Sbjct: 56 VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVN 108
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 63.2 bits (154), Expect = 2e-11
Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 33/153 (21%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
+ A+VTGA +G A L G V L +A+S L + I +
Sbjct: 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITV 102
Query: 180 ELNLCR-----------------LKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHT 220
+ +L + + ++LV NA F +
Sbjct: 103 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND 162
Query: 221 EDGFETT--------------FQVNHLAHFYLT 239
EDG E F N +A ++L
Sbjct: 163 EDGHEPCVGDREAMETATADLFGSNAIAPYFLI 195
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 62.1 bits (152), Expect = 2e-11
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCI 177
GR L I+T A GIG A + A G +VI + K + K +
Sbjct: 2 GR-LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL-QELEKYPGIQ------ 53
Query: 178 AMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
L++ + K + +FA E ++ L++L AG G E ++ + +N
Sbjct: 54 TRVLDVTKKKQIDQFANEVER----LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLN 105
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 63.5 bits (155), Expect = 2e-11
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 119 RDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
+ L A+VTGA GIG A A G V+ +D A + + ++ + A
Sbjct: 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAI--DVDGAAEDLKRVADK---VGGTA 263
Query: 179 MELNLCRLKSVKKFAEEYQKKF-RSLNILVLNAGV 212
+ L++ +V K + ++ILV NAG+
Sbjct: 264 LTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI 298
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 61.5 bits (150), Expect = 3e-11
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 15/118 (12%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAM 179
++ + A+VTG +G+G T + L G +V++ LD + + L +
Sbjct: 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVV----LDIRGEDVVADL----GDRARFA 57
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETTFQVN 231
++ +V A + + +L I+V AG + F +N
Sbjct: 58 AADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDIN 114
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 61.0 bits (149), Expect = 5e-11
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 6/118 (5%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA-CRSLDKANDAISKILTEKPSAQCIAMELNLC 184
+VTG + GIG R A G RV + + + A+ ++ I + + +A+ ++
Sbjct: 29 VLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAI--TESGGEAVAIPGDVG 86
Query: 185 RLKSVKKFAEEYQKKFRSLNILVLNAGVF---GLGFSHTEDGFETTFQVNHLAHFYLT 239
+ ++F L+ LV NAG+ + + E +VN
Sbjct: 87 NAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCA 144
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 60.4 bits (147), Expect = 9e-11
Identities = 26/124 (20%), Positives = 44/124 (35%), Gaps = 23/124 (18%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+++G TGIG T + L G +++ + + I+ + T + Q I
Sbjct: 4 IVISGCATGIGAATRKVLEAAGHQIVGIDI---RDAEVIADLSTAEGRKQAI-------- 52
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENA 245
A+ K + ++ LVL AG+ VN+ L A
Sbjct: 53 -------ADVLAKCSKGMDGLVLCAGL-----GPQTKVLGNVVSVNYFGATELMDAFLPA 100
Query: 246 LIKG 249
L KG
Sbjct: 101 LKKG 104
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 60.4 bits (147), Expect = 1e-10
Identities = 35/158 (22%), Positives = 61/158 (38%), Gaps = 31/158 (19%)
Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLK 187
VTGA++G G A + G VI R + +D L + A+ L++ +
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDD-----LVAAYPDRAEAISLDVTDGE 64
Query: 188 SVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENA 245
+ A + ++ +++LV NAG +G TE F+++ + +L A
Sbjct: 65 RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELH----VFGPARLTRA 120
Query: 246 LIKGAKLFARQQG----------------AATSIYCAT 267
L+ R++G A S Y AT
Sbjct: 121 LLP----QMRERGSGSVVNISSFGGQLSFAGFSAYSAT 154
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 60.7 bits (148), Expect = 1e-10
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 10/116 (8%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI--------LTEKPSAQ 175
+VTG G G A LA G +IL C ++ ++ EK +
Sbjct: 13 VLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRK 72
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVN 231
E+++ +V + +F L+++V NAG+ LG F F V+
Sbjct: 73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVD 128
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 59.2 bits (144), Expect = 2e-10
Identities = 16/124 (12%), Positives = 39/124 (31%), Gaps = 17/124 (13%)
Query: 121 LSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAME 180
+S+ IV G +G +G V+ L + A I ++
Sbjct: 1 MSSGKVIVYGGKGALGSAILEFFKKNGYTVLNI--DLSANDQA----------DSNILVD 48
Query: 181 LNLCRLKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTEDG---FETTFQVNHLAH 235
N + + E+ + ++ + AG + G + ++D + + + +
Sbjct: 49 GNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSS 108
Query: 236 FYLT 239
Sbjct: 109 AIAA 112
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSA---QCIAMELN 182
++TGA++G G TA +LA G RV + R + N + + + +EL+
Sbjct: 8 ILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELD 67
Query: 183 LCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
+ SV + ++ + +++L+ NAG G + T + F + +N
Sbjct: 68 VQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDIN 118
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 57.7 bits (140), Expect = 6e-10
Identities = 15/153 (9%), Positives = 43/153 (28%), Gaps = 23/153 (15%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+V G +G ++ V + + +A + + +++
Sbjct: 10 VLVYGGRGALGSRCVQAFRARNWWVASI--DVVENEEA----------SASVIVKMTDSF 57
Query: 186 LKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTE---DGFETTFQVNHLAHFYLTL 240
+ + E K ++ ++ AG + G + ++ + ++ + +
Sbjct: 58 TEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSH 117
Query: 241 QLENALIKGAKLF------ARQQGAATSIYCAT 267
L +G L A Y
Sbjct: 118 LATKHLKEGGLLTLAGAKAALDGTPGMIGYGMA 150
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 58.0 bits (141), Expect = 9e-10
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 12/118 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAIS--------KILTEKPSAQ 175
A +TGA G G A LA G ++ CR + A L E+ +
Sbjct: 49 AFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRR 108
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 231
IA + ++ L S++ +E +F ++ILV N G+ G S T+ + Q N
Sbjct: 109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTN 166
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 56.8 bits (138), Expect = 2e-09
Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 17/123 (13%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKILT------------EK 171
A VTGA G G A LA G +I C+ + + + +
Sbjct: 14 AFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKG 73
Query: 172 PSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTF 228
+ + + E+++ ++K + ++ L+I+V NAG+ G + +E+ +
Sbjct: 74 HNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMI 133
Query: 229 QVN 231
+N
Sbjct: 134 DIN 136
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 55.6 bits (135), Expect = 4e-09
Identities = 25/119 (21%), Positives = 41/119 (34%), Gaps = 13/119 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI---------LTEKPSA 174
A +TGA G G A +A G +I L L E +
Sbjct: 14 AFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR 73
Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+ +A ++ ++K ++ L+I+V NAGV T + F +N
Sbjct: 74 RIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDIN 132
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 55.6 bits (135), Expect = 5e-09
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI---------LTEKPSA 174
A +TGA G G A LA G +I C + + L E
Sbjct: 18 AFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR 77
Query: 175 QCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 231
+ + L++ ++++ + ++F L+++V NAGV G T++ ++T VN
Sbjct: 78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVN 136
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 54.9 bits (133), Expect = 7e-09
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI--------LTEKPSAQ 175
A +TGA G G A LA G +I C + ++ L E ++
Sbjct: 16 AFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSR 75
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVN 231
+A + ++ +S+ + + L+I+V NAG+ + +DG+ VN
Sbjct: 76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVIDVN 129
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 54.7 bits (132), Expect = 1e-08
Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 8/112 (7%)
Query: 126 AIVTGANTGIGFETARSLA---LHGCRVILACRSLDKANDAISKILTEKPSAQCI-AMEL 181
++TG ++GIG A LA +V R L + ++L
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64
Query: 182 NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 231
++ KSV E +++LV NAG+ LG + ED + VN
Sbjct: 65 DVRDSKSVAAARER--VTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVN 114
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 54.2 bits (131), Expect = 1e-08
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
A+VTG +G+G A +L G RV++ LD + I +E ++ R
Sbjct: 5 ALVTGGASGLGRAAALALKARGYRVVV----LDLRREG----------EDLIYVEGDVTR 50
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETTFQVN 231
+ V++ Q++ L +V AGV G H + F +VN
Sbjct: 51 EEDVRRAVARAQEEAP-LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVN 101
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 54.3 bits (130), Expect = 1e-08
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 8 LPDSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDL 58
+ WE ++ + YY+NH T+ T W HP+ + DL
Sbjct: 3 ASQHFLSTSVQGPWERAISPNKVPYYINHETQTTCWDHPKMTELYQSLADL 53
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 54.5 bits (132), Expect = 1e-08
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILA--CRSLDKANDAISKI--------LTEKPSAQ 175
A +TGA G G A +LA G +I C+ LD +S E +
Sbjct: 31 AFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRR 90
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 231
IA ++++ +++ ++ + L+I++ NA + G + VN
Sbjct: 91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVN 149
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 53.7 bits (130), Expect = 2e-08
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 120 DLSNYNAIVTGANTGIGFETARSLALHGCRVIL--ACRSLDKANDAIS--------KILT 169
D A++TG G+G A +LA G + + C + D ++ L
Sbjct: 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV 66
Query: 170 EKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETT 227
EK +CI+ ++++ +++ F E + ++I + NAG+ L ++
Sbjct: 67 EKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEV 126
Query: 228 FQVN 231
N
Sbjct: 127 IGTN 130
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 53.4 bits (129), Expect = 2e-08
Identities = 27/153 (17%), Positives = 40/153 (26%), Gaps = 11/153 (7%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCR 185
+TG+ +GIG LA G VI R +S + + +
Sbjct: 4 IAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVL 63
Query: 186 LKSVKKFAEEYQKKFRSLNILVLNAGVF----GLGFSHTEDGFETTFQVNHLAHFYLT-- 239
V L + V GV GL + + V +A
Sbjct: 64 DGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA 123
Query: 240 -----LQLENALIKGAKLFARQQGAATSIYCAT 267
+ A A QQG Y +
Sbjct: 124 ELPMVEAMLAGDEARAIELAEQQGQTHLAYAGS 156
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted
open sheet structure, oxidoreductase; 1.90A
{Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4
PDB: 1lua_A*
Length = 287
Score = 53.3 bits (128), Expect = 2e-08
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKI 167
G + A+V +G +A LA G V+L R LDKA A +
Sbjct: 114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 163
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B
member 1; triple-stranded beta-sheet; NMR {Homo
sapiens} SCOP: b.72.1.1
Length = 55
Score = 45.5 bits (107), Expect = 4e-07
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
+++ +LP GW G YY + T TQW P
Sbjct: 13 AFETDSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3;
Fe65-like protein 2, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Length = 39
Score = 44.2 bits (104), Expect = 8e-07
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
S S LPPGW + A G YY + + TQW P
Sbjct: 2 SSGSSGGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRP 37
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain
group IV, rotamase; NMR {Emericella nidulans}
Length = 54
Score = 41.4 bits (97), Expect = 1e-05
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 11 SDSEDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
S LP GWE R + + YY N AT ++W P
Sbjct: 2 SMVNTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPP 38
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 45.1 bits (107), Expect = 2e-05
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVI----------LACRSLDKANDAISKILTEKPSAQ 175
IVTGA GIG A + A G RV+ A + +I +
Sbjct: 30 VIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEI--TAAGGE 87
Query: 176 CIAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHL 233
+A N+ + + F L++LV NAG+ + + +E+ F+ V+
Sbjct: 88 AVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLK 147
Query: 234 AHFYLT 239
HF
Sbjct: 148 GHFATM 153
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 45.1 bits (107), Expect = 2e-05
Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 16/125 (12%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVIL---------ACRSLDKANDAISKILTEKPSAQC 176
I+TGA G+G + A G +V++ + A+ + +I K
Sbjct: 11 VIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEI--VKNGGVA 68
Query: 177 IAMELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLA 234
+A + + K E K F ++++++ NAG+ TE ++ V+
Sbjct: 69 VA---DYNNVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNG 125
Query: 235 HFYLT 239
F +T
Sbjct: 126 AFAVT 130
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/155 (18%), Positives = 62/155 (40%), Gaps = 13/155 (8%)
Query: 87 PRIVFAKEEKENPLDIRQKYDHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALH 146
P ++ N D S L + ++TGA G+G E A+ A +
Sbjct: 291 PFMLNDYATLTNEARKLPANDASGAPTVSLKDKV-----VLITGAGAGLGKEYAKWFAKY 345
Query: 147 GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEEYQKKFRSLNIL 206
G +V++ A + +I + + + ++ K + + K+ +++IL
Sbjct: 346 GAKVVVN--DFKDATKTVDEI--KAAGGEAWPDQHDVA--KDSEAIIKNVIDKYGTIDIL 399
Query: 207 VLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 239
V NAG+ ++ +++ QV+ + F L+
Sbjct: 400 VNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLS 434
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 43.9 bits (104), Expect = 3e-05
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 22/128 (17%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPS---AQCIAMEL- 181
+VTGA G+G A + A G V++ ND A + E+
Sbjct: 12 VLVTGAGGGLGRAYALAFAERGALVVV--------NDLGGDFKGVGKGSSAADKVVEEIR 63
Query: 182 --------NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
N +++ +K + F ++++V NAG+ +++ ++ +V+
Sbjct: 64 RRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVH 123
Query: 232 HLAHFYLT 239
F +T
Sbjct: 124 LRGSFQVT 131
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 43.6 bits (103), Expect = 6e-05
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 126 AIVTGANTGIGFETARSLALHGCRVILACRSLDKAND---AISKILTEKPSAQCIAMEL- 181
A+VTGA G+G E A A G +V++ ND S + +A + E+
Sbjct: 22 AVVTGAGAGLGREYALLFAERGAKVVV--------NDLGGTHSGDGASQRAADIVVDEIR 73
Query: 182 --------NLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 231
+ + K E K F ++ILV NAG+ +E + V+
Sbjct: 74 KAGGEAVADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVH 133
Query: 232 HLAHFYLT 239
F T
Sbjct: 134 LKGSFKCT 141
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.22.1.1
Length = 40
Score = 38.6 bits (90), Expect = 6e-05
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 11 SDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
S W E T DG VYY N T + WT P
Sbjct: 2 SSGSSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
Score = 28.2 bits (63), Expect = 0.40
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 55 SGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDP 87
S W ++ + DGK+ +YN T +T P
Sbjct: 5 SSGTEEIWVENKTPDGKVYYYNARTRESAWTKP 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 9e-05
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 21/121 (17%)
Query: 48 TGVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPLD--IRQK 105
++ DL ++D +I Y +D R V + E +D IR
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVY----DTFDGSDLR-VLSGSISERIVDCIIRLP 487
Query: 106 YD-HSTKALQILHGRDLSNYNAIVT---GANTGIGFETARSLALHGCRVILACRSLDKAN 161
+T + H I+ G +G+G T R+ G RVI+A +LD
Sbjct: 488 VKWETTTQFKATH---------ILDFGPGGASGLGVLTHRNKDGTGVRVIVA-GTLDINP 537
Query: 162 D 162
D
Sbjct: 538 D 538
Score = 40.4 bits (94), Expect = 8e-04
Identities = 39/259 (15%), Positives = 63/259 (24%), Gaps = 95/259 (36%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND--------AISKILT 169
G DL Y + A+ + ++A++ +I I+
Sbjct: 1632 GMDL--YKT----------SKAAQDV-------------WNRADNHFKDTYGFSILDIVI 1666
Query: 170 EKPSAQCIAMELNLCRLKSVKKFAEEYQK---------KFRSLNIL-VLNAGVFGLGFSH 219
P I + K+ E Y K ++ I +N F
Sbjct: 1667 NNPVNLTI-----HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 220 TEDG-FETTF-QVNHLAHFYLTLQL--ENALIKGAKLFARQQG---------AATSIYCA 266
+ T F Q + LI FA G A+ A
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA---GHSLGEYAALAS----LA 1774
Query: 267 TSLDLSLPVS-----GSYFNNC-------------CRCPPSKAAQDEALATKLWKLSEEM 308
+ + V G P + A S+E
Sbjct: 1775 DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAAS---------FSQEA 1825
Query: 309 IQSVVSTWLEETTERGEVV 327
+Q VV + T E+V
Sbjct: 1826 LQYVVERVGKRTGWLVEIV 1844
Score = 35.0 bits (80), Expect = 0.034
Identities = 37/280 (13%), Positives = 68/280 (24%), Gaps = 122/280 (43%)
Query: 108 HSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRV------ILACRSLDKAN 161
+ST+ L + HG + + ++ IL + A
Sbjct: 4 YSTRPLTLSHG-------------SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 162 DAISKILTEKPSAQCIAMELNLCRLKSVKKF----AEEYQKKFRSLNILVLNAGVFGLGF 217
D ++P+ EL V KF + + VLN +
Sbjct: 51 D-------DEPTTP---AEL-------VGKFLGYVSSLVEPSKVGQFDQVLNLCL----- 88
Query: 218 SHTEDGFETTF-QVN--H--------------------LAHFYLTLQL---------ENA 245
FE + + N H + ++ + +A
Sbjct: 89 ----TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 246 LIK-----GAKLFAR--QQGAAT-------SIYCATSLDLSLPVSGSYFNNCCRCPPSKA 291
L + A+L A QG +Y +Y
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ------------TY-------HVLVG 185
Query: 292 AQDEALATKLWKLSEEMIQSV--------VSTWLEETTER 323
+ A L +L + + + WLE +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Score = 35.0 bits (80), Expect = 0.038
Identities = 49/334 (14%), Positives = 90/334 (26%), Gaps = 103/334 (30%)
Query: 67 SEDGKITFY-------NKDTHVK-------TYT---DPRIVFA----KEEKENPLDIRQK 105
+G N D + + TY I F+ E LD +
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 106 YDHSTKALQILHGRD----------------------LSNYNAI--VTGANTGIGFETAR 141
+ L+ L L++Y + G G +
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268
Query: 142 SLALHGCRVILA-----CRSLDKANDAISKILT-------EKPSAQCIAMELNLCRLKSV 189
H ++ A S + ++ K +T +L S+
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR---CYEAYPNTSLP--PSI 323
Query: 190 KKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG 249
+ + E + S +L + L +D + N +H Q+E +L+ G
Sbjct: 324 LEDSLENNEGVPSP-MLS----ISNLTQEQVQDYVN---KTN--SHLPAGKQVEISLVNG 373
Query: 250 AKLF--ARQQGAATSIY----------CATSLDLS---------------LPVSGSYFNN 282
AK + G S+Y + LD S LPV+ + ++
Sbjct: 374 AKNLVVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 283 CCRCPPSKAAQDEALATKLWKLSEEMIQSVVSTW 316
+D + + I V T+
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIP-VYDTF 463
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 41.5 bits (98), Expect = 3e-04
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 10 DSDSEDELPPGWEERVTADGCVYYVNHATEGTQWTHPRT 48
++ LP GWE R+T VY+V+H T+ T W PR
Sbjct: 2 NASQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40
Score = 32.7 bits (75), Expect = 0.15
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 56 GDLPLGWEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKENPL--DIRQKYDH 108
G LP GWE ++ ++ F + +T T+ DPR+ + ++ D R+K +
Sbjct: 7 GPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRKVIY 61
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain,
ordered linker; 1.60A {Candida albicans}
Length = 177
Score = 40.2 bits (94), Expect = 3e-04
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 11 SDSEDELPPGWEERVTA-DGCVYYVNHATEGTQWTHP 46
+ + LPP W RV+ Y++N +T + W P
Sbjct: 2 ASTSTGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPP 38
Score = 29.5 bits (66), Expect = 0.99
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 58 LPLGWEKSVSE-DGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKA 112
LP W VS K F N+ T+ ++ P + +++ I + ++ K
Sbjct: 8 LPPNWTIRVSRSHNKEYFLNQSTNESSWDPP---YGTDKEVLNAYIAKFKNNGYKP 60
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich
peptides, protein-protein interactions, structural
protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A
1zr7_A 2dyf_A
Length = 41
Score = 36.8 bits (85), Expect = 4e-04
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 18 PPGWEERVTADGCVYYVNHATEGTQWTHP 46
W E + DG YY N T+ + W P
Sbjct: 11 KSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
Score = 27.5 bits (61), Expect = 0.67
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 49 GVKKKVSGDLPLGWEKSVSEDGKITFYNKDTHVKTYTDP 87
G ++ G W + S DG+ +YN +T T+ P
Sbjct: 1 GSRRASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1;
WW domain, beta sheet, Fe65, protein binding; 1.33A
{Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Length = 38
Score = 35.4 bits (81), Expect = 8e-04
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 16 ELPPGWEERVTADGCVYYVNHATEGTQWTHP 46
+LP GW G YY + T TQW P
Sbjct: 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPP 32
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal
transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB:
2jup_W 2rly_W 2rm0_W 2nnt_A
Length = 37
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 18 PPGWEERVTADGCVYYVNHATEGTQWTHP 46
W E TADG YY N+ T + W P
Sbjct: 5 VSEWTEYKTADGKTYYYNNRTLESTWEKP 33
Score = 25.8 bits (57), Expect = 2.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 62 WEKSVSEDGKITFYNKDTHVKTYTDP 87
W + + DGK +YN T T+ P
Sbjct: 8 WTEYKTADGKTYYYNNRTLESTWEKP 33
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant
(R14A), oncogenic transformation, small molecule cycle,
rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo
sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A*
2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A*
3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A*
1f8a_B* ...
Length = 166
Score = 37.1 bits (86), Expect = 0.003
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 10 DSDSEDELPPGWEERVT-ADGCVYYVNHATEGTQWTHP 46
E++LPPGWE+ ++ + G VYY NH T +QW P
Sbjct: 3 HMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERP 40
Score = 28.2 bits (63), Expect = 2.4
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 58 LPLGWEKSVSEDGKIT-FYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHSTKALQIL 116
LP GWEK++S ++N T+ + P + K Q + +L
Sbjct: 10 LPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNSSSGGKN-----GQGEPARVRCSHLL 64
Query: 117 HGRDLSNYNAIVTGANTGIGFETARSLA 144
S + E A L
Sbjct: 65 VKHSQSRRPSSWRQEKITRTKEEALELI 92
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.72.1.1
Length = 50
Score = 34.2 bits (78), Expect = 0.003
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 21 WEERVTADGCVYYVNHATEGTQWTHP 46
W E +T++G YY + + +QW P
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKP 34
Score = 26.2 bits (57), Expect = 2.8
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 62 WEKSVSEDGKITFYNKDTHVKTYTDPRIVFAKEEKEN 98
W + ++ +G +Y+ + + P +K +
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTS 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.003
Identities = 39/248 (15%), Positives = 72/248 (29%), Gaps = 64/248 (25%)
Query: 88 RIVFAKEEKENPL----DIR-----QKYDHSTKALQILHGRDLSNYNAIVTGANTGI--- 135
R + + EN L +++ ++ S K L L R + + T I
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLD 292
Query: 136 ----GFETARSLALHGCRVILACRSLDKANDA----------ISKILTEKPS-----AQC 176
+L L CR D + I++ + + +
Sbjct: 293 HHSMTLTPDEVKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 177 IAMELNLCRLKSVKKF-AEEYQKKFRSLNILVLNAGV---------FGLGFSHTE----- 221
+L S+ EY+K F L++ +A + F + S
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 222 ---------DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARQQGAATSIYCATSLDLS 272
E+T + + + L ++LEN + T + + DL
Sbjct: 411 LHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKT--FDSD--DLI 465
Query: 273 LPVSGSYF 280
P YF
Sbjct: 466 PPYLDQYF 473
Score = 35.2 bits (80), Expect = 0.031
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 55/191 (28%)
Query: 75 YNKDTHVKTYTD-PRIVFAKEEKEN----PLDIRQKY-------DHSTKALQILHGRDLS 122
+ + K D P+ + +KEE ++ + + +Q L
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 123 -NYNAIVTGANTGIGFET-ARSLALHGCRVILACRS-LDKANDAISKILTEKPSAQCIAM 179
NY ++ + I E S+ R+ + R L N +K
Sbjct: 89 INYKFLM----SPIKTEQRQPSMMT---RMYIEQRDRLYNDNQVFAK------------- 128
Query: 180 ELNLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS----------HTEDGFETTFQ 229
N+ RL+ K + + R ++++ GV G G + + + F+
Sbjct: 129 -YNVSRLQPYLKLRQALL-ELRPAKNVLID-GVLGSGKTWVALDVCLSYKVQCKMD--FK 183
Query: 230 VNHLAHFYLTL 240
+ F+L L
Sbjct: 184 I-----FWLNL 189
Score = 30.6 bits (68), Expect = 0.91
Identities = 37/216 (17%), Positives = 65/216 (30%), Gaps = 63/216 (29%)
Query: 58 LPLGWEKSVSED--------GKITFYNKDTHVKTYTDPRIVFAKEEKENPLDIRQKYDHS 109
L L W + D K + K T + P I L+++ K ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY---------LELKVKLENE 442
Query: 110 TKALQILHGRDLSNYNAIVTGANTG-------------IGF-----ETARSLALHGCRVI 151
LH + +YN T + IG E + L V
Sbjct: 443 YA----LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVF 497
Query: 152 LACRSLDKANDAISKILTEKPSAQCIAMELN-LCRLKSVKKF----AEEYQKKFRSLNIL 206
L R L++ KI + + LN L +LK K + +Y++ ++
Sbjct: 498 LDFRFLEQ------KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 207 VLNAG----------VFGLGFSHTEDG-FETTF-QV 230
+ + + ++ FE QV
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 37.2 bits (86), Expect = 0.007
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 122 SNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKA 160
+ ++TGA G IG E + L G +V++ K
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQ 514
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 34.0 bits (78), Expect = 0.073
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 128 VTGANTGIGFETARSLALHG-CRVILACRSLDKANDAISKILTEKPSAQCIAMEL 181
VTGA E AR LA G ++L + E + EL
Sbjct: 256 VTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAEL 310
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.2 bits (75), Expect = 0.076
Identities = 21/109 (19%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 9 PDSDSEDELPP------GWEERVTADGCVYYVNHATEGTQWTHP--RTGVK------KKV 54
DSD + ++PP G E T ++ A E P ++
Sbjct: 133 VDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYE------PFENIAIELPPNEILFS 186
Query: 55 SGDLPLGWEKSVSE-DGKITFYNKDTHVKTYTDPRIVFAKEEKENPLDI 102
+ V E + K TF++ + K Y + F K+ ++ D+
Sbjct: 187 ENNDMDNNNDGVDELNKKCTFWDAIS--KLYY-VQFFF-KQAEQEQADV 231
>2dk7_A Transcription elongation regulator 1; structural genomics, WW
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 73
Score = 30.9 bits (69), Expect = 0.084
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 21 WEERVTADGCVYYVNHATEGTQWTHP-----RTGVKKKVSGDLPLGWEKSVSEDG 70
W T D V++ N T + W P R V K + + P +KS G
Sbjct: 22 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQ-EPP--HKKSGPSSG 73
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 33.0 bits (75), Expect = 0.16
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 118 GRDLSNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKAN 161
G + ++TGA G IG E + L G +V++ K
Sbjct: 670 GVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQV 714
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 32.6 bits (74), Expect = 0.22
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 118 GRDLSNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKAN 161
G +A++TGA G IG E + L G +VI+ +
Sbjct: 647 GLTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQV 691
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 32.3 bits (74), Expect = 0.23
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 87 PRIVFAKEEKENPLD-IRQKYDHSTKALQILHGRDLSNYNAIVTGANTG-IGFETARSLA 144
+P+ Q++ G+ ++ A+T + A LA
Sbjct: 491 WNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLA 550
Query: 145 LHGCRVILA 153
G V +
Sbjct: 551 TAGHEVTIV 559
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 31.1 bits (71), Expect = 0.57
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 112 ALQILHGRDLSNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKANDA 163
+ GR +V + +G A LA G V + ++
Sbjct: 512 PDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWT 564
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 30.9 bits (70), Expect = 0.60
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 128 VTGANTGIGFETARSLALHGCR-VILACRSLDKANDA 163
+TG IG AR LA G ++L R +A A
Sbjct: 264 ITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGA 300
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 30.8 bits (70), Expect = 0.65
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 128 VTGANTGIGFETARSLALHGCR-VILACRS 156
VTG G+G + AR LA G ++L RS
Sbjct: 231 VTGGTGGVGGQIARWLARRGAPHLLLVSRS 260
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Length = 144
Score = 29.8 bits (68), Expect = 0.70
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 119 RDLSNYNAIVTGANTG-IGFETARSLALHGCRVILACRSLDKA 160
R ++ G G + E A + +V +A R++D
Sbjct: 17 RKNGGNKILLVGN--GMLASEIAPYFSYPQYKVTVAGRNIDHV 57
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 30.5 bits (69), Expect = 0.79
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 128 VTGANTGIGFETARSLALHGCR-VILACRS 156
VTG GIG AR LA G ++L R
Sbjct: 244 VTGGTGGIGGRVARRLAEQGAAHLVLTSRR 273
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 29.6 bits (67), Expect = 1.2
Identities = 8/56 (14%), Positives = 15/56 (26%)
Query: 107 DHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKAND 162
H +V GAN + L G + R+ ++ +
Sbjct: 5 HHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE 60
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.2 bits (68), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 127 IVTGANTGIGFETARSLALHGCR-VILACRS 156
++TG G G + A+ L L G + ++L RS
Sbjct: 1888 VITGGLGGFGLQLAQWLRLRGAQKLVLTSRS 1918
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 112 ALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVIL 152
L +L + + G GIGF+TA L+ G
Sbjct: 483 YLDVLRDKAPVGNKVAIIGCG-GIGFDTAMYLSQPGESTSQ 522
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 29.2 bits (66), Expect = 1.3
Identities = 5/35 (14%), Positives = 15/35 (42%)
Query: 128 VTGANTGIGFETARSLALHGCRVILACRSLDKAND 162
+ G+ +G +SL+ ++ R +++
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ 39
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 29.6 bits (67), Expect = 1.4
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 128 VTGANTGIGFETARSLA--LHGCRVILACRSLDKAND 162
VTGA +G + L + ++I R+++KA+
Sbjct: 5 VTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST 41
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 29.7 bits (67), Expect = 1.5
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 127 IVTGANTGIGFETARSLAL-HGCR-VILACRSLDKANDA 163
+VTG +G E AR L + G R ++L R A+ A
Sbjct: 534 LVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGA 572
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design,
oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex
aeolicus} PDB: 2hk8_A 2hk7_A
Length = 275
Score = 29.0 bits (66), Expect = 2.0
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 117 HGRDLSNYNAIVTGA---NTGIGFETARSLALHGCRVILACRSLDKAND 162
++ + +V GA + + + +L G +V L R+ +KA
Sbjct: 123 LIPEVKEKSILVLGAGGASRAVIY----ALVKEGAKVFLWNRTKEKAIK 167
>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.20A {Homo sapiens}
Length = 259
Score = 28.6 bits (64), Expect = 2.4
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 129 TGANTGIGFETARSLALHGCRVILACRSLDKANDAISK 166
G R LA H +VIL + K ++I+
Sbjct: 94 PHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITN 131
>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, phosphoprotein,
protein binding; 2.80A {Homo sapiens}
Length = 306
Score = 28.7 bits (64), Expect = 2.5
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 15/94 (15%)
Query: 129 TGANTGIGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKS 188
G R LA H +VIL + K ++I+ EL+L
Sbjct: 141 PHVKGAQGISCGRHLANHDVQVILFLPNFVKMLESITN-------------ELSLFSKTQ 187
Query: 189 VKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED 222
++ + +++++ + D
Sbjct: 188 GQQVSSLKDLPTSPVDLVI--NCLDCPENVFLRD 219
>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv
T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A
{Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A*
Length = 451
Score = 28.8 bits (64), Expect = 2.5
Identities = 9/70 (12%), Positives = 19/70 (27%)
Query: 250 AKLFARQQGAATSIYCATSLDLSLPVSGSYFNNCCRCPPSKAAQDEALATKLWKLSEEMI 309
+L A T A ++ VS +Y + E L + +
Sbjct: 276 VRLERIDGSAPTEFCRAVDARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLR 335
Query: 310 QSVVSTWLEE 319
+ + +
Sbjct: 336 SELDPASMRQ 345
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA
binding protein, structural genomics, NPPSFA; 1.80A
{Pyrococcus horikoshii} PDB: 1s04_A
Length = 109
Score = 27.5 bits (61), Expect = 2.5
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 51 KKKVSGDLPLGWEKSVSEDGKITFYNKD-----THVKTYTDPRIVFAKEEKEN 98
KKK+ G L + + I F ++ Y+ + + KE EN
Sbjct: 19 KKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIEN 71
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 28.8 bits (64), Expect = 2.7
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 118 GRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
+ N V G +G AR A G +V + R D
Sbjct: 150 DFTIHGANVAVLGLG-RVGMSVARKFAALGAKVKVGARESDLLARI 194
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 28.6 bits (65), Expect = 2.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 123 NYNAIVTGANTGI-GFETARSLALHGCRVILACRSLDKAND 162
+ + IV GA G+ G AR+LA G V++ + A
Sbjct: 4 DIDCIVIGA--GVVGLAIARALAAGGHEVLV----AEAAEG 38
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone,
unstructured N-terminus, two alpha- helices; NMR
{Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A
1z2g_A
Length = 69
Score = 26.4 bits (58), Expect = 2.9
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 283 CCRCPPSKAAQDE 295
CC C P K +D
Sbjct: 23 CCVCKPEKEERDT 35
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 28.5 bits (63), Expect = 3.0
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 126 AIVTGANTGIGFETARSLALHGC-----RVILACRSLDKANDAISKI 167
A++ G IG A L L +V R A + I
Sbjct: 4 ALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPI 50
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 28.6 bits (65), Expect = 3.1
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 21 WEERVTADGCVYYVNHATEGTQWTHPRTGVKKKVSGDLPLGWEKSVSEDGK 71
WEE + Y EG + ++ G+LP GWE + +
Sbjct: 311 WEELLAK----YTAAFPAEGAAF-------VAQMRGELPSGWEAKLPTNSS 350
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.4 bits (64), Expect = 3.3
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 128 VTGANTGIGFETARSLA--LHGCRVILACRSLDKAND 162
+TGA +G SL + +++ R+ KA
Sbjct: 4 ITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA 40
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 28.5 bits (64), Expect = 3.9
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 107 DHSTKALQILHGRDLSNYNAIVTGANTGIGFETARSLALHGCRVILACRSLDKA 160
+ L++ +V GA G G A G +V++A R+ ++A
Sbjct: 348 SSGDPSSVPSSSSPLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYERA 400
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 28.1 bits (62), Expect = 4.1
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 149 RVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKSVKKFAEE---YQKKFRSLN 204
+ +D A D K P + I EL + + ++ Y+ F+ +
Sbjct: 272 KAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKD 330
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 28.0 bits (61), Expect = 5.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 134 GIGFETARSLALHGCRVILACRSLDKANDAISKI 167
+ T L G +V +ACR+L+ A + +
Sbjct: 13 FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV 46
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C
pseudogene (COX17); oxidative protein folding,
macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A
2rn9_A 2rnb_A
Length = 67
Score = 25.8 bits (56), Expect = 5.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 283 CCRCPPSKAAQDEALATK 300
CC CP +K A+D + K
Sbjct: 27 CCTCPETKKARDACIIEK 44
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 27.6 bits (62), Expect = 5.9
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 128 VTGANTGIGFETARSLA-LHGCRVILACRSLDKA 160
VT A G G A L+ C VI C S +K+
Sbjct: 169 VTAAAGGTGQ-FAMQLSKKAKCHVIGTCSSDEKS 201
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 27.1 bits (60), Expect = 7.4
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 128 VTGANTGIGFETARSLAL-HGCRVILACRSLDKAND 162
+ GA I LA + L R K +
Sbjct: 28 ILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK 63
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 27.2 bits (60), Expect = 7.5
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 127 IVTGANTGIGFETARSLALHGCRVILACRSLDKANDA 163
+ T A + +G + G +++ R ++A+
Sbjct: 176 VHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLL 212
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio
cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Length = 340
Score = 27.3 bits (61), Expect = 8.2
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 130 GANTGIGFETARSLALH-GCRVILACRSLDKANDAISKILTEKPSAQCIAMELNLCRLKS 188
GA G AL GC +IL C + A + + + + ++
Sbjct: 248 GAAVMGGPVERSHQALVAGCDMILICNKREAAVEVLDNLPIMEVPQAEALLKKQQFSYSE 307
Query: 189 VKKFAEEYQKKFRSLNILV 207
+K+ E +Q+ ++ L+
Sbjct: 308 LKRL-ERWQQASANMQRLI 325
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 26.9 bits (60), Expect = 8.4
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 128 VTGANTGIGFETARSLALHGC-RVILACRSLDKAND 162
+TGA +G + + R+++K D
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD 40
>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase,
INHA, enoyl acyl carrier reductase, pyrrolid
carboxamide; HET: NAD 566; 1.62A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A*
2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A*
2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A*
3fnh_A* 3oew_A* 2aqh_A* ...
Length = 269
Score = 26.8 bits (60), Expect = 9.3
Identities = 19/125 (15%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 121 LSNYNAIVTG-ANTG-IGFETARSLALHGCRVILACRSLDKANDAISKILTEKPSAQCIA 178
L +V+G I F AR G +++L + I+ L K
Sbjct: 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKA----PL 60
Query: 179 MELNLCRLKSVKKFAEEYQKKF---RSLNILV----------LNAGVFGLGFSHTEDGFE 225
+EL++ + + A + L+ +V + F F
Sbjct: 61 LELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPF---FDAPYADVS 117
Query: 226 TTFQV 230
+
Sbjct: 118 KGIHI 122
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 26.7 bits (59), Expect = 9.4
Identities = 8/37 (21%), Positives = 10/37 (27%), Gaps = 2/37 (5%)
Query: 128 VTGANTGIGFETARSLAL--HGCRVILACRSLDKAND 162
VTGA+ G + L RS
Sbjct: 9 VTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.392
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,885,767
Number of extensions: 279570
Number of successful extensions: 1381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1147
Number of HSP's successfully gapped: 329
Length of query: 328
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 234
Effective length of database: 4,077,219
Effective search space: 954069246
Effective search space used: 954069246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.5 bits)