Query psy425
Match_columns 254
No_of_seqs 324 out of 2779
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 20:36:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01135 PCMT: Protein-L-isoas 100.0 7.5E-30 1.6E-34 210.1 14.9 159 8-251 1-164 (209)
2 COG2518 Pcm Protein-L-isoaspar 100.0 3.9E-29 8.6E-34 202.3 16.7 153 10-251 4-161 (209)
3 PRK13942 protein-L-isoaspartat 99.9 3.5E-26 7.6E-31 189.7 17.9 159 7-250 4-167 (212)
4 PRK13944 protein-L-isoaspartat 99.9 2.6E-25 5.7E-30 183.6 18.0 158 9-250 2-164 (205)
5 TIGR00080 pimt protein-L-isoas 99.9 3.5E-25 7.7E-30 184.2 17.6 162 4-250 2-168 (215)
6 KOG1661|consensus 99.9 2.1E-24 4.6E-29 172.5 14.2 170 4-251 5-185 (237)
7 PRK00312 pcm protein-L-isoaspa 99.9 1.5E-21 3.2E-26 162.0 17.0 156 6-250 6-166 (212)
8 PRK13943 protein-L-isoaspartat 99.9 6.1E-21 1.3E-25 166.7 16.5 158 9-250 7-171 (322)
9 COG2226 UbiE Methylase involve 99.8 7E-18 1.5E-22 140.7 12.7 117 126-254 29-148 (238)
10 PF01209 Ubie_methyltran: ubiE 99.7 1.9E-17 4.2E-22 138.9 9.3 117 127-254 26-145 (233)
11 PF12847 Methyltransf_18: Meth 99.6 8.7E-15 1.9E-19 108.7 11.7 84 153-242 1-85 (112)
12 PLN02233 ubiquinone biosynthes 99.6 1E-14 2.2E-19 124.7 13.6 108 142-254 64-174 (261)
13 COG2230 Cfa Cyclopropane fatty 99.6 1.1E-14 2.3E-19 123.8 11.9 103 140-254 61-168 (283)
14 TIGR02752 MenG_heptapren 2-hep 99.6 3.1E-14 6.7E-19 119.4 13.4 107 140-254 34-143 (231)
15 PF02353 CMAS: Mycolic acid cy 99.6 1.5E-14 3.3E-19 124.1 10.9 103 140-254 51-158 (273)
16 KOG1540|consensus 99.6 3.1E-14 6.7E-19 117.7 11.8 120 126-254 78-206 (296)
17 PF13847 Methyltransf_31: Meth 99.6 4E-14 8.8E-19 111.3 12.1 95 152-253 2-101 (152)
18 PRK00107 gidB 16S rRNA methylt 99.6 7.2E-14 1.6E-18 113.5 12.9 96 150-254 42-137 (187)
19 COG2242 CobL Precorrin-6B meth 99.6 9.5E-14 2.1E-18 110.6 13.2 104 140-253 23-126 (187)
20 PLN02244 tocopherol O-methyltr 99.5 1.4E-13 3.1E-18 122.0 13.6 96 152-254 117-215 (340)
21 TIGR00138 gidB 16S rRNA methyl 99.5 1.7E-13 3.7E-18 110.9 11.7 93 153-254 42-134 (181)
22 TIGR02469 CbiT precorrin-6Y C5 99.5 7.2E-13 1.6E-17 99.8 13.7 106 140-254 8-114 (124)
23 TIGR03587 Pse_Me-ase pseudamin 99.5 5.3E-13 1.1E-17 110.0 12.3 88 150-250 40-128 (204)
24 PRK08287 cobalt-precorrin-6Y C 99.5 1.1E-12 2.4E-17 106.6 14.1 104 140-254 20-123 (187)
25 PRK05785 hypothetical protein; 99.5 4.3E-13 9.2E-18 112.3 11.7 107 129-254 30-139 (226)
26 PRK00377 cbiT cobalt-precorrin 99.5 9.1E-13 2E-17 108.2 12.9 108 140-254 29-137 (198)
27 PRK14103 trans-aconitate 2-met 99.5 5.3E-13 1.1E-17 113.8 10.6 98 140-254 18-118 (255)
28 PRK11873 arsM arsenite S-adeno 99.4 1.3E-12 2.8E-17 112.4 12.7 99 150-254 74-175 (272)
29 PF08241 Methyltransf_11: Meth 99.4 8.4E-13 1.8E-17 94.5 9.2 86 158-254 1-89 (95)
30 PRK11207 tellurite resistance 99.4 1.5E-12 3.2E-17 106.9 11.8 91 140-242 19-109 (197)
31 PF13649 Methyltransf_25: Meth 99.4 7.2E-13 1.6E-17 96.9 8.8 81 157-244 1-84 (101)
32 PRK11705 cyclopropane fatty ac 99.4 1.8E-12 4E-17 116.4 13.0 99 140-254 156-259 (383)
33 PRK15451 tRNA cmo(5)U34 methyl 99.4 2.2E-12 4.7E-17 109.5 12.5 98 150-254 53-156 (247)
34 PTZ00098 phosphoethanolamine N 99.4 1.8E-12 3.9E-17 111.0 12.0 103 140-254 41-148 (263)
35 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.1E-13 4.5E-18 112.5 5.5 83 152-244 58-140 (243)
36 PRK11036 putative S-adenosyl-L 99.4 1E-12 2.2E-17 112.0 9.4 95 152-254 43-141 (255)
37 PLN02396 hexaprenyldihydroxybe 99.4 8.4E-13 1.8E-17 115.7 8.7 95 152-254 130-227 (322)
38 COG2519 GCD14 tRNA(1-methylade 99.4 7.1E-12 1.5E-16 104.2 13.5 94 135-236 78-171 (256)
39 PRK01683 trans-aconitate 2-met 99.4 4.1E-12 8.9E-17 108.4 12.1 100 140-254 20-122 (258)
40 PLN02336 phosphoethanolamine N 99.4 4.4E-12 9.6E-17 117.4 13.0 104 140-254 255-361 (475)
41 TIGR00477 tehB tellurite resis 99.4 6.7E-12 1.5E-16 102.8 11.9 102 140-254 19-125 (195)
42 PRK08317 hypothetical protein; 99.4 9.6E-12 2.1E-16 104.1 12.9 106 140-254 8-116 (241)
43 PRK06202 hypothetical protein; 99.4 4.1E-12 9E-17 106.7 10.6 85 151-244 58-145 (232)
44 TIGR00740 methyltransferase, p 99.4 1.3E-11 2.8E-16 104.2 13.5 97 151-254 51-153 (239)
45 PF05175 MTS: Methyltransferas 99.4 9.8E-12 2.1E-16 99.6 11.6 92 140-241 20-111 (170)
46 TIGR00406 prmA ribosomal prote 99.3 1.4E-11 3.1E-16 106.8 12.4 106 140-254 146-251 (288)
47 TIGR02021 BchM-ChlM magnesium 99.3 1.4E-11 3E-16 102.6 12.0 93 140-243 42-134 (219)
48 COG4106 Tam Trans-aconitate me 99.3 3.2E-12 6.9E-17 103.4 7.6 90 140-244 19-108 (257)
49 PRK15068 tRNA mo(5)U34 methylt 99.3 1.4E-11 3E-16 108.4 12.1 104 141-254 112-218 (322)
50 PF08704 GCD14: tRNA methyltra 99.3 2.1E-11 4.6E-16 102.7 12.5 95 136-237 25-122 (247)
51 PLN02781 Probable caffeoyl-CoA 99.3 1.2E-11 2.6E-16 104.1 10.7 109 140-254 56-170 (234)
52 COG2264 PrmA Ribosomal protein 99.3 9E-12 2E-16 106.9 10.1 91 138-236 147-237 (300)
53 PRK10258 biotin biosynthesis p 99.3 1.6E-11 3.6E-16 104.3 11.1 99 140-254 31-132 (251)
54 PF06325 PrmA: Ribosomal prote 99.3 9.5E-12 2.1E-16 107.5 9.3 90 138-238 146-235 (295)
55 PRK00517 prmA ribosomal protei 99.3 2.1E-11 4.6E-16 103.6 11.1 100 140-254 106-205 (250)
56 PRK12335 tellurite resistance 99.3 2.7E-11 5.8E-16 105.1 11.6 90 141-243 110-199 (287)
57 PF07021 MetW: Methionine bios 99.3 1.2E-11 2.6E-16 99.3 8.4 88 151-253 11-103 (193)
58 PRK00121 trmB tRNA (guanine-N( 99.3 2.4E-11 5.2E-16 100.1 10.1 95 153-254 40-148 (202)
59 smart00650 rADc Ribosomal RNA 99.3 5.4E-11 1.2E-15 95.2 11.5 97 140-249 2-98 (169)
60 PRK07402 precorrin-6B methylas 99.3 7.6E-11 1.7E-15 96.5 12.6 105 140-254 29-134 (196)
61 PRK04266 fibrillarin; Provisio 99.3 8E-11 1.7E-15 98.4 12.8 96 150-254 69-168 (226)
62 TIGR00452 methyltransferase, p 99.3 4.7E-11 1E-15 104.3 11.7 102 143-254 113-217 (314)
63 PRK15001 SAM-dependent 23S rib 99.3 8.2E-11 1.8E-15 105.1 13.3 93 140-239 217-309 (378)
64 PRK14901 16S rRNA methyltransf 99.3 7.5E-11 1.6E-15 107.9 13.1 89 140-236 241-333 (434)
65 KOG1270|consensus 99.3 6.7E-12 1.5E-16 104.4 5.4 90 154-253 90-186 (282)
66 PRK00216 ubiE ubiquinone/menaq 99.3 1E-10 2.2E-15 98.1 12.7 97 140-243 40-136 (239)
67 PLN02490 MPBQ/MSBQ methyltrans 99.3 5.2E-11 1.1E-15 104.9 11.2 93 152-254 112-207 (340)
68 PF03848 TehB: Tellurite resis 99.3 5.5E-11 1.2E-15 96.4 10.5 92 140-244 19-110 (192)
69 TIGR00537 hemK_rel_arch HemK-r 99.2 1.1E-10 2.4E-15 94.2 12.0 81 150-242 16-96 (179)
70 PLN02585 magnesium protoporphy 99.2 8.1E-11 1.8E-15 102.9 11.8 98 140-244 130-228 (315)
71 COG4122 Predicted O-methyltran 99.2 8.5E-11 1.8E-15 97.0 11.0 109 140-254 47-158 (219)
72 PF08242 Methyltransf_12: Meth 99.2 2.3E-12 5E-17 93.7 1.6 87 158-252 1-89 (99)
73 PF05401 NodS: Nodulation prot 99.2 5E-11 1.1E-15 95.9 9.2 89 150-250 40-130 (201)
74 PLN02476 O-methyltransferase 99.2 6.4E-11 1.4E-15 101.3 10.4 109 140-254 106-220 (278)
75 smart00828 PKS_MT Methyltransf 99.2 6.3E-11 1.4E-15 98.9 10.2 93 155-254 1-96 (224)
76 TIGR02081 metW methionine bios 99.2 4.7E-11 1E-15 97.6 9.2 89 150-253 10-103 (194)
77 PTZ00146 fibrillarin; Provisio 99.2 1.5E-10 3.2E-15 99.4 12.4 97 150-254 129-229 (293)
78 TIGR02072 BioC biotin biosynth 99.2 8.8E-11 1.9E-15 98.4 10.8 103 140-253 20-126 (240)
79 PRK07580 Mg-protoporphyrin IX 99.2 1.3E-10 2.9E-15 97.2 11.6 99 141-250 50-150 (230)
80 PF13659 Methyltransf_26: Meth 99.2 4.9E-11 1.1E-15 89.2 8.0 79 154-239 1-81 (117)
81 PF01596 Methyltransf_3: O-met 99.2 3.4E-11 7.4E-16 99.1 7.8 108 140-253 33-146 (205)
82 PRK06922 hypothetical protein; 99.2 1.2E-10 2.7E-15 109.0 12.2 97 150-254 415-529 (677)
83 PLN03075 nicotianamine synthas 99.2 2.7E-10 5.9E-15 98.1 13.4 84 152-241 122-207 (296)
84 TIGR00446 nop2p NOL1/NOP2/sun 99.2 2.5E-10 5.5E-15 97.8 13.0 83 150-238 68-150 (264)
85 PRK14903 16S rRNA methyltransf 99.2 2.8E-10 6.1E-15 103.9 13.6 83 150-238 234-317 (431)
86 PRK11088 rrmA 23S rRNA methylt 99.2 1.5E-10 3.2E-15 99.7 11.1 87 153-254 85-173 (272)
87 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.9E-10 4.1E-15 105.6 12.2 101 140-252 286-390 (443)
88 PRK14902 16S rRNA methyltransf 99.2 3.7E-10 8.1E-15 103.7 14.0 89 141-237 240-329 (444)
89 PRK09489 rsmC 16S ribosomal RN 99.2 3.5E-10 7.5E-15 100.2 13.2 89 140-240 185-273 (342)
90 PRK14966 unknown domain/N5-glu 99.2 1.9E-10 4.2E-15 103.1 11.6 91 140-238 238-329 (423)
91 COG2263 Predicted RNA methylas 99.2 5.6E-10 1.2E-14 89.0 12.8 77 150-238 42-118 (198)
92 PRK03522 rumB 23S rRNA methylu 99.2 1.9E-10 4.2E-15 101.0 11.0 91 153-252 173-264 (315)
93 TIGR00091 tRNA (guanine-N(7)-) 99.2 1.8E-10 4E-15 94.2 9.8 95 153-254 16-124 (194)
94 TIGR03533 L3_gln_methyl protei 99.2 3.9E-10 8.4E-15 97.6 11.9 79 152-237 120-198 (284)
95 TIGR00563 rsmB ribosomal RNA s 99.2 5.9E-10 1.3E-14 101.9 13.7 87 140-235 227-316 (426)
96 PRK14967 putative methyltransf 99.2 4.5E-10 9.8E-15 93.9 11.8 79 150-238 33-111 (223)
97 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 5.2E-10 1.1E-14 92.8 12.0 94 140-243 28-121 (223)
98 COG2890 HemK Methylase of poly 99.2 2.2E-10 4.9E-15 98.7 10.0 74 156-238 113-186 (280)
99 COG2813 RsmC 16S RNA G1207 met 99.1 6.1E-10 1.3E-14 95.3 12.2 89 140-239 147-235 (300)
100 PRK14968 putative methyltransf 99.1 8.6E-10 1.9E-14 89.2 12.6 86 141-238 13-100 (188)
101 PF13489 Methyltransf_23: Meth 99.1 1.8E-10 3.9E-15 90.5 8.4 85 140-243 9-93 (161)
102 smart00138 MeTrc Methyltransfe 99.1 2.7E-10 5.9E-15 97.6 9.9 91 152-243 98-218 (264)
103 PTZ00338 dimethyladenosine tra 99.1 6.9E-10 1.5E-14 96.3 12.3 98 140-249 25-122 (294)
104 COG4123 Predicted O-methyltran 99.1 2.2E-10 4.8E-15 96.0 8.9 84 150-239 41-126 (248)
105 PLN02336 phosphoethanolamine N 99.1 3.3E-10 7.2E-15 104.9 11.0 102 140-254 26-134 (475)
106 TIGR00536 hemK_fam HemK family 99.1 8.6E-10 1.9E-14 95.5 12.5 77 154-237 115-191 (284)
107 PRK14121 tRNA (guanine-N(7)-)- 99.1 7.8E-10 1.7E-14 98.6 12.4 106 140-254 111-227 (390)
108 TIGR03840 TMPT_Se_Te thiopurin 99.1 8E-10 1.7E-14 91.7 11.7 91 152-246 33-131 (213)
109 TIGR02716 C20_methyl_CrtF C-20 99.1 9.6E-10 2.1E-14 96.2 12.8 103 141-254 139-246 (306)
110 PRK10909 rsmD 16S rRNA m(2)G96 99.1 8.6E-10 1.9E-14 90.4 11.5 101 141-250 42-144 (199)
111 TIGR01177 conserved hypothetic 99.1 1E-09 2.2E-14 97.0 12.7 88 140-238 171-258 (329)
112 TIGR00479 rumA 23S rRNA (uraci 99.1 5.9E-10 1.3E-14 102.0 11.0 102 141-253 282-387 (431)
113 PRK14896 ksgA 16S ribosomal RN 99.1 1.1E-09 2.4E-14 93.5 12.0 85 140-239 18-102 (258)
114 PRK11805 N5-glutamine S-adenos 99.1 1E-09 2.2E-14 95.9 11.9 75 155-236 135-209 (307)
115 KOG2904|consensus 99.1 1E-09 2.3E-14 91.9 10.9 93 140-238 134-232 (328)
116 PLN02589 caffeoyl-CoA O-methyl 99.1 6.3E-10 1.4E-14 94.0 9.7 109 140-254 67-182 (247)
117 KOG2915|consensus 99.1 2.4E-09 5.2E-14 89.6 12.7 96 136-238 90-187 (314)
118 PRK01544 bifunctional N5-gluta 99.1 1.8E-09 4E-14 100.4 12.6 79 153-238 138-216 (506)
119 PRK00274 ksgA 16S ribosomal RN 99.1 1.5E-09 3.4E-14 93.3 11.2 86 140-239 31-116 (272)
120 PRK09328 N5-glutamine S-adenos 99.1 2.5E-09 5.4E-14 91.9 12.5 81 150-238 105-185 (275)
121 PRK04457 spermidine synthase; 99.1 1.8E-09 3.9E-14 92.4 11.3 91 139-236 53-144 (262)
122 PRK11188 rrmJ 23S rRNA methylt 99.1 2E-09 4.4E-14 89.1 11.1 71 151-238 49-127 (209)
123 TIGR03534 RF_mod_PrmC protein- 99.0 3.8E-09 8.3E-14 89.4 13.1 78 153-238 87-164 (251)
124 TIGR02085 meth_trns_rumB 23S r 99.0 1.6E-09 3.4E-14 97.4 11.1 93 152-253 232-325 (374)
125 PRK14904 16S rRNA methyltransf 99.0 2.2E-09 4.8E-14 98.6 12.3 87 140-235 239-325 (445)
126 TIGR03438 probable methyltrans 99.0 3.5E-09 7.5E-14 92.5 12.9 89 150-243 60-153 (301)
127 TIGR03704 PrmC_rel_meth putati 99.0 1.9E-09 4.2E-14 91.6 10.6 76 153-238 86-163 (251)
128 PRK10901 16S rRNA methyltransf 99.0 6E-09 1.3E-13 95.3 14.2 89 140-238 233-323 (427)
129 KOG1541|consensus 99.0 2.1E-09 4.6E-14 87.4 9.4 85 138-238 35-122 (270)
130 KOG3420|consensus 99.0 7.6E-10 1.7E-14 84.3 6.3 90 140-238 33-124 (185)
131 TIGR00755 ksgA dimethyladenosi 99.0 4.1E-09 9E-14 89.7 11.3 93 140-248 18-113 (253)
132 PF08003 Methyltransf_9: Prote 99.0 4E-09 8.7E-14 90.3 10.6 85 152-245 114-199 (315)
133 COG2265 TrmA SAM-dependent met 99.0 3.5E-09 7.6E-14 96.3 10.6 103 140-253 282-387 (432)
134 PRK13255 thiopurine S-methyltr 99.0 5.4E-09 1.2E-13 87.0 10.7 92 150-245 34-133 (218)
135 PRK05134 bifunctional 3-demeth 98.9 7.5E-09 1.6E-13 86.9 10.6 84 150-243 45-129 (233)
136 KOG3010|consensus 98.9 1.8E-09 3.9E-14 89.0 6.4 96 151-254 30-128 (261)
137 PHA03411 putative methyltransf 98.9 9.9E-09 2.2E-13 87.3 10.8 79 151-242 62-140 (279)
138 PRK05031 tRNA (uracil-5-)-meth 98.9 7.3E-09 1.6E-13 92.7 10.4 88 154-250 207-310 (362)
139 PRK04148 hypothetical protein; 98.9 1.5E-08 3.1E-13 77.3 10.4 94 140-251 5-100 (134)
140 TIGR01983 UbiG ubiquinone bios 98.9 6E-09 1.3E-13 86.8 9.0 95 140-243 30-127 (224)
141 TIGR00438 rrmJ cell division p 98.9 7.8E-09 1.7E-13 84.1 9.1 71 150-237 29-107 (188)
142 PRK00811 spermidine synthase; 98.9 1.7E-08 3.7E-13 87.4 11.2 86 152-239 75-161 (283)
143 PLN02672 methionine S-methyltr 98.9 1.1E-08 2.4E-13 101.4 11.0 83 154-238 119-213 (1082)
144 PRK15128 23S rRNA m(5)C1962 me 98.9 1.8E-08 4E-13 90.9 10.8 81 152-238 219-303 (396)
145 KOG1271|consensus 98.9 1.6E-08 3.6E-13 80.0 8.9 80 152-238 65-146 (227)
146 PHA03412 putative methyltransf 98.9 1.6E-08 3.4E-13 84.3 9.3 75 153-239 49-125 (241)
147 PRK11727 23S rRNA mA1618 methy 98.9 2.4E-08 5.2E-13 87.4 10.9 83 153-241 114-202 (321)
148 PRK00050 16S rRNA m(4)C1402 me 98.9 9.9E-09 2.1E-13 88.8 8.4 90 140-239 8-101 (296)
149 cd02440 AdoMet_MTases S-adenos 98.8 2.9E-08 6.3E-13 70.9 9.6 77 156-240 1-78 (107)
150 KOG4300|consensus 98.8 2.1E-08 4.7E-13 80.9 9.4 94 154-254 77-174 (252)
151 COG0030 KsgA Dimethyladenosine 98.8 4.3E-08 9.3E-13 82.9 11.5 87 140-239 19-106 (259)
152 PF01170 UPF0020: Putative RNA 98.8 4.5E-08 9.8E-13 79.0 10.9 92 140-238 17-116 (179)
153 PF02475 Met_10: Met-10+ like- 98.8 3E-08 6.4E-13 81.2 9.9 81 150-237 98-178 (200)
154 TIGR02143 trmA_only tRNA (urac 98.8 2.9E-08 6.3E-13 88.5 10.6 101 140-249 183-300 (353)
155 TIGR00095 RNA methyltransferas 98.8 5.8E-08 1.3E-12 79.1 10.9 81 152-239 48-132 (189)
156 PRK11783 rlmL 23S rRNA m(2)G24 98.8 2.3E-08 5E-13 96.6 9.5 81 151-237 536-617 (702)
157 PF05958 tRNA_U5-meth_tr: tRNA 98.8 2.8E-08 6.1E-13 88.5 8.5 101 140-252 186-302 (352)
158 PRK13256 thiopurine S-methyltr 98.8 9.2E-08 2E-12 79.7 10.8 96 150-249 40-145 (226)
159 PLN02366 spermidine synthase 98.7 1.6E-07 3.6E-12 81.9 12.0 85 152-239 90-176 (308)
160 KOG0820|consensus 98.7 1.3E-07 2.9E-12 79.4 10.6 88 140-239 47-134 (315)
161 COG3963 Phospholipid N-methylt 98.7 1E-07 2.2E-12 74.5 9.3 116 98-244 13-133 (194)
162 PRK01581 speE spermidine synth 98.7 1.5E-07 3.3E-12 83.1 11.1 85 151-237 148-235 (374)
163 COG2520 Predicted methyltransf 98.7 1.5E-07 3.3E-12 82.6 9.9 81 151-238 186-266 (341)
164 PRK04338 N(2),N(2)-dimethylgua 98.7 2E-07 4.4E-12 83.8 10.8 92 153-253 57-149 (382)
165 PF10294 Methyltransf_16: Puta 98.7 3.3E-07 7.1E-12 73.6 11.0 98 150-252 42-145 (173)
166 PRK03612 spermidine synthase; 98.7 1.9E-07 4.1E-12 87.4 10.9 87 152-240 296-385 (521)
167 PF09445 Methyltransf_15: RNA 98.7 3.7E-08 8E-13 77.8 5.1 76 155-238 1-79 (163)
168 TIGR00417 speE spermidine synt 98.6 3.6E-07 7.9E-12 78.6 11.7 83 153-238 72-155 (270)
169 KOG3191|consensus 98.6 3.4E-07 7.4E-12 72.6 9.7 77 154-238 44-120 (209)
170 KOG2187|consensus 98.6 1.1E-07 2.3E-12 86.3 7.8 103 140-253 372-480 (534)
171 KOG1499|consensus 98.6 1.6E-07 3.5E-12 81.7 7.7 78 150-235 57-134 (346)
172 PF00398 RrnaAD: Ribosomal RNA 98.5 8.7E-07 1.9E-11 75.9 10.9 96 140-249 19-117 (262)
173 PF02390 Methyltransf_4: Putat 98.5 4.5E-07 9.7E-12 74.2 8.7 77 155-238 19-98 (195)
174 PF05724 TPMT: Thiopurine S-me 98.5 3.6E-07 7.7E-12 76.1 8.2 101 142-248 28-136 (218)
175 PF03602 Cons_hypoth95: Conser 98.5 2.8E-07 6.1E-12 74.6 7.2 94 140-240 29-126 (183)
176 KOG1500|consensus 98.5 7.6E-07 1.7E-11 76.9 10.0 75 153-236 177-251 (517)
177 PRK11933 yebU rRNA (cytosine-C 98.5 1.1E-06 2.4E-11 80.9 11.6 83 150-238 110-193 (470)
178 PF06080 DUF938: Protein of un 98.5 6.1E-07 1.3E-11 73.2 8.7 102 140-247 11-121 (204)
179 PF00891 Methyltransf_2: O-met 98.4 2E-06 4.3E-11 72.6 10.4 78 150-244 97-174 (241)
180 COG1092 Predicted SAM-dependen 98.4 9.5E-07 2.1E-11 79.2 8.6 78 153-236 217-298 (393)
181 COG0742 N6-adenine-specific me 98.4 4.8E-06 1E-10 67.0 11.6 93 140-239 30-125 (187)
182 TIGR00478 tly hemolysin TlyA f 98.4 2.4E-06 5.2E-11 71.5 10.2 40 152-193 74-113 (228)
183 COG4976 Predicted methyltransf 98.4 2.8E-07 6.1E-12 75.7 3.8 87 140-242 114-202 (287)
184 PF08123 DOT1: Histone methyla 98.4 1.6E-06 3.5E-11 71.4 8.2 110 140-253 31-149 (205)
185 COG0116 Predicted N6-adenine-s 98.4 5.2E-06 1.1E-10 73.6 11.5 92 140-238 180-309 (381)
186 COG0144 Sun tRNA and rRNA cyto 98.4 1.2E-05 2.6E-10 71.8 14.0 83 150-238 153-239 (355)
187 KOG1663|consensus 98.3 7.1E-06 1.5E-10 67.6 10.8 109 140-254 61-175 (237)
188 PF02527 GidB: rRNA small subu 98.3 4.9E-06 1.1E-10 67.4 9.8 101 140-250 32-135 (184)
189 PRK11783 rlmL 23S rRNA m(2)G24 98.3 9.8E-06 2.1E-10 78.6 13.6 92 140-238 178-313 (702)
190 COG1041 Predicted DNA modifica 98.3 2.8E-06 6E-11 74.4 8.2 89 140-238 185-274 (347)
191 PF05185 PRMT5: PRMT5 arginine 98.3 5.3E-06 1.1E-10 76.1 10.2 76 154-235 187-265 (448)
192 TIGR00006 S-adenosyl-methyltra 98.3 6.8E-06 1.5E-10 71.4 10.0 90 140-239 9-103 (305)
193 TIGR00308 TRM1 tRNA(guanine-26 98.3 7.1E-06 1.5E-10 73.6 10.2 91 155-253 46-138 (374)
194 PF10672 Methyltrans_SAM: S-ad 98.3 3E-06 6.4E-11 73.1 7.5 80 152-237 122-204 (286)
195 COG0357 GidB Predicted S-adeno 98.2 1.5E-05 3.2E-10 65.8 10.3 91 140-238 51-145 (215)
196 COG0220 Predicted S-adenosylme 98.2 6.1E-06 1.3E-10 68.9 8.1 77 155-238 50-129 (227)
197 KOG2899|consensus 98.2 3.7E-06 8.1E-11 69.7 6.5 55 145-200 50-104 (288)
198 KOG2361|consensus 98.2 2.5E-06 5.4E-11 70.6 5.3 81 156-243 74-159 (264)
199 COG4076 Predicted RNA methylas 98.2 3.2E-06 6.9E-11 67.5 5.6 72 154-236 33-104 (252)
200 PLN02232 ubiquinone biosynthes 98.2 4.3E-06 9.4E-11 66.2 6.2 70 182-254 1-73 (160)
201 PF02384 N6_Mtase: N-6 DNA Met 98.2 8.7E-06 1.9E-10 71.3 8.6 93 140-238 35-135 (311)
202 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.2 1E-05 2.2E-10 70.1 8.6 88 143-238 77-166 (283)
203 PF03291 Pox_MCEL: mRNA cappin 98.1 1.9E-05 4.1E-10 69.7 10.4 86 153-241 62-158 (331)
204 PLN02823 spermine synthase 98.1 2.5E-05 5.4E-10 69.1 11.0 81 153-236 103-184 (336)
205 PF05219 DREV: DREV methyltran 98.1 1.8E-05 3.8E-10 66.7 9.4 79 153-249 94-174 (265)
206 TIGR01444 fkbM_fam methyltrans 98.1 1E-05 2.3E-10 62.4 7.5 58 156-220 1-58 (143)
207 COG3897 Predicted methyltransf 98.1 5.8E-06 1.3E-10 66.4 5.9 78 151-240 77-154 (218)
208 PF05891 Methyltransf_PK: AdoM 98.1 8.9E-06 1.9E-10 66.8 7.1 90 153-251 55-146 (218)
209 PF04816 DUF633: Family of unk 98.1 1E-05 2.2E-10 66.6 7.5 74 157-236 1-74 (205)
210 PF13679 Methyltransf_32: Meth 98.1 4.7E-05 1E-09 58.9 10.7 93 151-247 23-118 (141)
211 COG2521 Predicted archaeal met 98.0 4.4E-06 9.5E-11 68.9 3.4 99 150-254 131-237 (287)
212 PRK10742 putative methyltransf 98.0 3.3E-05 7.1E-10 64.9 8.3 94 141-240 76-176 (250)
213 COG2384 Predicted SAM-dependen 97.9 5.4E-05 1.2E-09 62.1 8.3 82 150-237 13-94 (226)
214 PF09243 Rsm22: Mitochondrial 97.9 9.5E-05 2.1E-09 63.7 9.4 85 153-243 33-117 (274)
215 KOG1975|consensus 97.9 5.8E-05 1.3E-09 65.2 7.7 87 150-239 114-207 (389)
216 TIGR02987 met_A_Alw26 type II 97.9 9.5E-05 2.1E-09 69.5 9.9 94 140-239 13-123 (524)
217 KOG2730|consensus 97.8 1.2E-05 2.6E-10 65.7 2.6 78 153-238 94-175 (263)
218 PF01269 Fibrillarin: Fibrilla 97.8 0.00054 1.2E-08 56.5 12.2 82 150-239 70-154 (229)
219 PF05148 Methyltransf_8: Hypot 97.8 8.8E-05 1.9E-09 60.6 7.5 89 140-254 60-150 (219)
220 PF05971 Methyltransf_10: Prot 97.8 0.00023 5E-09 61.6 10.3 84 154-244 103-193 (299)
221 PRK10611 chemotaxis methyltran 97.8 0.00014 3E-09 62.9 8.6 90 154-244 116-239 (287)
222 COG0421 SpeE Spermidine syntha 97.7 0.00024 5.1E-09 61.3 9.7 82 155-239 78-160 (282)
223 PRK01544 bifunctional N5-gluta 97.7 0.00011 2.3E-09 68.7 8.1 79 153-238 347-427 (506)
224 PF03059 NAS: Nicotianamine sy 97.7 0.00054 1.2E-08 58.8 11.2 81 154-239 121-203 (276)
225 PF01739 CheR: CheR methyltran 97.7 0.0004 8.8E-09 56.8 9.8 93 153-246 31-154 (196)
226 PRK00536 speE spermidine synth 97.7 0.00075 1.6E-08 57.6 11.5 92 152-253 71-162 (262)
227 COG0275 Predicted S-adenosylme 97.7 0.00049 1.1E-08 59.2 10.2 91 140-239 12-107 (314)
228 TIGR03439 methyl_EasF probable 97.6 0.00071 1.5E-08 59.5 11.0 91 147-243 70-172 (319)
229 PF01564 Spermine_synth: Sperm 97.6 0.00021 4.4E-09 60.7 7.3 85 151-238 74-160 (246)
230 COG0293 FtsJ 23S rRNA methylas 97.6 0.00024 5.3E-09 58.1 7.4 71 151-238 43-121 (205)
231 PRK11760 putative 23S rRNA C24 97.6 0.00023 5.1E-09 62.5 7.6 72 151-238 209-280 (357)
232 PF01795 Methyltransf_5: MraW 97.5 0.00019 4E-09 62.5 6.2 90 140-239 9-104 (310)
233 KOG2940|consensus 97.5 0.00016 3.6E-09 59.7 5.4 92 153-254 72-166 (325)
234 KOG1122|consensus 97.5 0.00043 9.3E-09 61.9 8.4 84 150-239 238-323 (460)
235 PF12147 Methyltransf_20: Puta 97.5 0.0019 4E-08 55.5 11.2 85 153-243 135-224 (311)
236 PF01728 FtsJ: FtsJ-like methy 97.5 8.1E-05 1.8E-09 59.9 2.7 68 154-238 24-101 (181)
237 COG1352 CheR Methylase of chem 97.4 0.0021 4.6E-08 55.0 11.2 104 140-244 82-218 (268)
238 KOG1227|consensus 97.4 0.00025 5.4E-09 60.7 4.5 93 153-254 194-287 (351)
239 KOG1269|consensus 97.3 0.00057 1.2E-08 61.0 6.3 102 146-254 103-207 (364)
240 COG0500 SmtA SAM-dependent met 97.3 0.0046 9.9E-08 46.5 10.7 90 157-253 52-146 (257)
241 COG1189 Predicted rRNA methyla 97.3 0.0016 3.6E-08 54.2 8.4 87 152-250 78-166 (245)
242 KOG4058|consensus 97.2 0.0012 2.5E-08 51.0 6.7 99 140-250 61-159 (199)
243 PF07091 FmrO: Ribosomal RNA m 97.2 0.0024 5.2E-08 53.7 8.8 93 140-241 92-184 (251)
244 PF13578 Methyltransf_24: Meth 97.1 9.1E-05 2E-09 54.2 -0.3 74 158-237 1-78 (106)
245 COG1889 NOP1 Fibrillarin-like 97.1 0.0036 7.8E-08 50.9 8.6 79 150-237 73-154 (231)
246 PF11599 AviRa: RRNA methyltra 97.1 0.00093 2E-08 54.7 4.9 48 153-200 51-99 (246)
247 KOG3045|consensus 97.1 0.0029 6.3E-08 53.3 7.9 87 140-254 168-256 (325)
248 PF04445 SAM_MT: Putative SAM- 97.0 0.002 4.3E-08 53.9 6.7 94 141-240 63-163 (234)
249 PHA01634 hypothetical protein 97.0 0.0051 1.1E-07 46.3 8.0 47 153-201 28-74 (156)
250 PRK11524 putative methyltransf 96.8 0.0057 1.2E-07 53.0 8.2 47 151-200 206-252 (284)
251 KOG4589|consensus 96.7 0.0026 5.6E-08 51.1 4.7 37 151-187 67-103 (232)
252 KOG1501|consensus 96.7 0.0031 6.8E-08 56.8 5.8 55 156-217 69-123 (636)
253 PF03141 Methyltransf_29: Puta 96.7 0.0012 2.7E-08 60.4 3.1 84 155-254 119-211 (506)
254 KOG1331|consensus 96.7 0.0017 3.7E-08 55.4 3.5 87 151-254 43-135 (293)
255 KOG1709|consensus 96.7 0.025 5.4E-07 46.6 10.0 77 152-237 100-178 (271)
256 COG0286 HsdM Type I restrictio 96.7 0.011 2.3E-07 55.2 9.1 92 140-238 175-274 (489)
257 PF04672 Methyltransf_19: S-ad 96.6 0.014 3.1E-07 49.8 8.7 96 140-243 56-165 (267)
258 cd00315 Cyt_C5_DNA_methylase C 96.6 0.0064 1.4E-07 52.4 6.7 71 156-240 2-74 (275)
259 PRK13699 putative methylase; P 96.4 0.015 3.3E-07 48.7 7.8 47 151-200 161-207 (227)
260 COG4262 Predicted spermidine s 96.3 0.019 4.1E-07 50.8 7.9 86 151-238 287-375 (508)
261 PF01555 N6_N4_Mtase: DNA meth 96.3 0.011 2.5E-07 48.6 6.2 43 151-196 189-231 (231)
262 COG1565 Uncharacterized conser 96.1 0.046 9.9E-07 48.5 9.2 48 153-200 77-131 (370)
263 KOG3178|consensus 96.0 0.023 5E-07 50.0 7.0 82 154-251 178-260 (342)
264 KOG2793|consensus 96.0 0.05 1.1E-06 46.0 8.5 96 153-252 86-188 (248)
265 KOG3115|consensus 95.9 0.013 2.8E-07 47.8 4.4 66 153-220 60-127 (249)
266 PF07942 N2227: N2227-like pro 95.8 0.086 1.9E-06 45.2 9.5 111 140-254 37-194 (270)
267 KOG1596|consensus 95.7 0.021 4.5E-07 47.8 5.1 79 150-236 153-234 (317)
268 PF01861 DUF43: Protein of unk 95.7 0.27 5.8E-06 41.3 11.7 77 152-237 43-121 (243)
269 KOG2671|consensus 95.6 0.015 3.3E-07 51.0 4.1 87 141-236 197-292 (421)
270 KOG2198|consensus 95.5 0.085 1.8E-06 46.8 8.5 93 140-238 142-246 (375)
271 PF02005 TRM: N2,N2-dimethylgu 95.5 0.044 9.6E-07 49.4 6.8 80 152-236 48-129 (377)
272 PF11968 DUF3321: Putative met 95.3 0.035 7.7E-07 45.8 5.0 65 155-244 53-120 (219)
273 COG1064 AdhP Zn-dependent alco 95.1 0.12 2.6E-06 45.8 8.2 86 150-253 163-250 (339)
274 COG4798 Predicted methyltransf 95.1 0.07 1.5E-06 43.3 6.1 40 150-189 45-84 (238)
275 PF02636 Methyltransf_28: Puta 95.1 0.11 2.4E-06 44.1 7.9 84 154-243 19-110 (252)
276 COG3129 Predicted SAM-dependen 95.0 0.11 2.3E-06 43.4 7.1 86 153-243 78-168 (292)
277 KOG3987|consensus 95.0 0.0038 8.3E-08 50.9 -1.3 42 153-197 112-153 (288)
278 PF04989 CmcI: Cephalosporin h 94.9 0.085 1.8E-06 43.4 6.2 62 153-221 32-96 (206)
279 PF06962 rRNA_methylase: Putat 94.7 0.088 1.9E-06 40.6 5.5 54 180-238 1-56 (140)
280 KOG2352|consensus 94.5 0.19 4.1E-06 46.2 8.1 82 150-240 44-126 (482)
281 COG1063 Tdh Threonine dehydrog 94.1 0.57 1.2E-05 41.8 10.3 92 150-254 165-261 (350)
282 KOG2651|consensus 94.0 0.2 4.3E-06 44.8 6.7 43 152-196 152-194 (476)
283 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.6 0.19 4E-06 42.9 6.0 86 151-239 54-169 (256)
284 PF07757 AdoMet_MTase: Predict 93.6 0.062 1.3E-06 39.3 2.6 32 153-187 58-89 (112)
285 COG1867 TRM1 N2,N2-dimethylgua 93.4 0.36 7.8E-06 43.0 7.5 75 154-235 53-128 (380)
286 PF00145 DNA_methylase: C-5 cy 93.4 0.088 1.9E-06 45.9 3.8 69 156-239 2-72 (335)
287 PRK09424 pntA NAD(P) transhydr 93.3 0.76 1.6E-05 43.1 10.0 43 152-196 163-206 (509)
288 KOG0024|consensus 93.1 0.22 4.8E-06 43.6 5.6 46 150-196 166-212 (354)
289 TIGR00675 dcm DNA-methyltransf 92.8 0.3 6.4E-06 43.0 6.2 69 157-239 1-70 (315)
290 KOG2078|consensus 92.5 0.095 2.1E-06 47.4 2.6 64 150-220 246-309 (495)
291 PF05050 Methyltransf_21: Meth 92.4 0.61 1.3E-05 36.1 7.0 43 159-201 1-48 (167)
292 PF07279 DUF1442: Protein of u 91.9 2.2 4.9E-05 35.2 9.7 96 140-241 29-128 (218)
293 COG0270 Dcm Site-specific DNA 91.8 0.65 1.4E-05 41.1 7.2 76 154-242 3-81 (328)
294 PRK10458 DNA cytosine methylas 91.8 1.4 2.9E-05 41.1 9.4 43 154-198 88-130 (467)
295 PF03686 UPF0146: Uncharacteri 91.5 2.1 4.6E-05 32.3 8.5 80 153-252 13-94 (127)
296 PF02254 TrkA_N: TrkA-N domain 91.1 0.67 1.5E-05 33.9 5.6 63 162-237 4-71 (116)
297 KOG2360|consensus 90.7 0.55 1.2E-05 42.0 5.4 66 150-221 210-275 (413)
298 COG1255 Uncharacterized protei 90.5 1.3 2.9E-05 32.8 6.3 78 155-252 15-94 (129)
299 KOG2782|consensus 90.3 0.34 7.5E-06 40.1 3.5 57 140-199 32-88 (303)
300 PRK09880 L-idonate 5-dehydroge 89.7 2.9 6.2E-05 36.8 9.4 46 150-196 166-212 (343)
301 KOG0821|consensus 89.7 3.5 7.5E-05 34.4 8.9 69 141-220 40-108 (326)
302 KOG3924|consensus 89.5 1.2 2.5E-05 40.2 6.4 93 140-239 181-283 (419)
303 KOG1253|consensus 89.4 0.19 4.2E-06 46.2 1.6 81 150-235 106-190 (525)
304 COG4301 Uncharacterized conser 89.3 5.4 0.00012 33.9 9.9 88 150-242 75-168 (321)
305 KOG2920|consensus 89.3 0.34 7.4E-06 41.6 2.9 38 152-191 115-152 (282)
306 KOG3201|consensus 88.8 0.2 4.3E-06 39.6 1.1 82 153-238 29-113 (201)
307 COG3510 CmcI Cephalosporin hyd 88.6 2.6 5.6E-05 34.4 7.2 89 153-252 69-166 (237)
308 COG0863 DNA modification methy 88.5 2.4 5.3E-05 36.4 7.9 58 141-201 210-267 (302)
309 KOG0822|consensus 88.4 3 6.5E-05 39.1 8.5 92 155-253 369-469 (649)
310 KOG1201|consensus 88.2 4.8 0.0001 35.0 9.2 75 153-238 37-124 (300)
311 KOG1098|consensus 88.2 0.52 1.1E-05 44.7 3.5 40 150-189 41-80 (780)
312 TIGR00561 pntA NAD(P) transhyd 87.9 2.3 4.9E-05 40.0 7.6 42 153-196 163-205 (511)
313 PRK06940 short chain dehydroge 87.7 6.8 0.00015 33.3 10.1 83 155-246 3-94 (275)
314 PRK08213 gluconate 5-dehydroge 87.6 4 8.7E-05 34.1 8.5 78 153-238 11-99 (259)
315 cd08230 glucose_DH Glucose deh 87.2 3.2 6.9E-05 36.7 8.0 44 151-196 170-217 (355)
316 KOG2352|consensus 87.0 0.46 9.9E-06 43.8 2.4 76 153-235 295-377 (482)
317 PTZ00357 methyltransferase; Pr 86.8 5.9 0.00013 38.6 9.5 78 156-234 703-798 (1072)
318 PRK06949 short chain dehydroge 86.7 3.5 7.5E-05 34.3 7.6 78 153-238 8-96 (258)
319 KOG1099|consensus 86.7 1.5 3.3E-05 36.7 5.1 78 154-248 42-140 (294)
320 TIGR00497 hsdM type I restrict 86.6 5.4 0.00012 37.5 9.5 82 153-238 217-303 (501)
321 TIGR02822 adh_fam_2 zinc-bindi 86.4 8.9 0.00019 33.6 10.3 46 150-197 162-208 (329)
322 COG1748 LYS9 Saccharopine dehy 86.2 3.6 7.8E-05 37.3 7.7 72 155-238 2-78 (389)
323 PF05206 TRM13: Methyltransfer 85.8 2 4.3E-05 36.7 5.6 41 151-191 16-60 (259)
324 PRK07774 short chain dehydroge 85.5 4.5 9.8E-05 33.5 7.7 78 153-238 5-93 (250)
325 COG1568 Predicted methyltransf 85.3 3.5 7.5E-05 35.6 6.7 75 153-235 152-228 (354)
326 PRK06172 short chain dehydroge 84.0 6.5 0.00014 32.7 8.0 78 153-238 6-94 (253)
327 cd08283 FDH_like_1 Glutathione 83.9 3.4 7.4E-05 37.1 6.6 47 150-197 181-228 (386)
328 PF02719 Polysacc_synt_2: Poly 83.6 2.7 5.8E-05 36.6 5.5 76 163-243 6-92 (293)
329 cd08254 hydroxyacyl_CoA_DH 6-h 83.5 13 0.00027 32.2 9.9 45 150-196 162-207 (338)
330 PF11899 DUF3419: Protein of u 83.2 3.7 8E-05 37.1 6.4 53 143-200 27-79 (380)
331 PRK08217 fabG 3-ketoacyl-(acyl 83.2 8.5 0.00018 31.7 8.4 78 153-238 4-92 (253)
332 PRK05854 short chain dehydroge 81.9 15 0.00032 32.0 9.7 80 153-238 13-103 (313)
333 PRK08339 short chain dehydroge 81.9 12 0.00026 31.5 8.9 79 153-238 7-95 (263)
334 PRK07890 short chain dehydroge 81.8 12 0.00026 31.1 8.8 78 153-238 4-92 (258)
335 PRK05867 short chain dehydroge 81.3 8.4 0.00018 32.0 7.7 78 153-238 8-96 (253)
336 KOG1562|consensus 80.2 6.8 0.00015 34.1 6.6 90 150-242 118-209 (337)
337 PRK07097 gluconate 5-dehydroge 79.9 17 0.00037 30.4 9.2 78 153-238 9-97 (265)
338 PRK07533 enoyl-(acyl carrier p 79.8 11 0.00024 31.6 7.9 78 153-238 9-98 (258)
339 PRK07677 short chain dehydroge 79.6 11 0.00023 31.4 7.7 77 154-238 1-88 (252)
340 PF02086 MethyltransfD12: D12 79.4 2.3 4.9E-05 35.8 3.6 55 140-199 9-63 (260)
341 PRK06194 hypothetical protein; 79.3 11 0.00023 32.1 7.8 78 153-238 5-93 (287)
342 cd08237 ribitol-5-phosphate_DH 78.9 5 0.00011 35.4 5.7 46 150-196 160-207 (341)
343 PRK03659 glutathione-regulated 78.7 5.9 0.00013 38.1 6.5 67 155-236 401-472 (601)
344 PRK05599 hypothetical protein; 78.6 20 0.00043 29.8 9.1 76 156-238 2-87 (246)
345 PRK06139 short chain dehydroge 78.5 12 0.00027 32.9 8.1 78 153-238 6-94 (330)
346 PRK05866 short chain dehydroge 78.2 20 0.00043 30.8 9.2 78 153-238 39-127 (293)
347 COG2933 Predicted SAM-dependen 78.2 16 0.00035 31.4 8.0 72 150-237 208-279 (358)
348 PRK07478 short chain dehydroge 78.1 22 0.00048 29.5 9.2 78 153-238 5-93 (254)
349 PRK05876 short chain dehydroge 78.1 19 0.00041 30.6 8.9 78 153-238 5-93 (275)
350 PRK07063 short chain dehydroge 78.0 21 0.00045 29.8 9.1 80 153-238 6-96 (260)
351 PRK12829 short chain dehydroge 77.7 16 0.00034 30.4 8.2 77 152-238 9-96 (264)
352 PRK06125 short chain dehydroge 77.7 18 0.00039 30.1 8.6 79 153-238 6-91 (259)
353 PRK03369 murD UDP-N-acetylmura 77.6 9.2 0.0002 35.7 7.3 75 150-241 8-83 (488)
354 PRK07814 short chain dehydroge 77.4 19 0.00041 30.2 8.7 78 153-238 9-97 (263)
355 PRK07062 short chain dehydroge 77.3 22 0.00048 29.6 9.1 80 153-238 7-97 (265)
356 PRK08251 short chain dehydroge 77.3 24 0.00053 29.0 9.3 79 154-238 2-91 (248)
357 PRK07035 short chain dehydroge 77.3 18 0.00038 30.0 8.4 78 153-238 7-95 (252)
358 PRK09072 short chain dehydroge 77.3 19 0.0004 30.1 8.6 77 153-238 4-90 (263)
359 TIGR02356 adenyl_thiF thiazole 77.2 13 0.00028 30.4 7.3 33 153-187 20-54 (202)
360 PRK10669 putative cation:proto 77.0 8 0.00017 36.8 6.8 66 155-235 418-488 (558)
361 PRK09496 trkA potassium transp 77.0 49 0.0011 30.2 11.9 84 140-236 217-305 (453)
362 PRK08945 putative oxoacyl-(acy 76.9 16 0.00034 30.2 8.0 81 151-238 9-102 (247)
363 PF03514 GRAS: GRAS domain fam 76.8 25 0.00053 31.8 9.6 60 140-201 99-168 (374)
364 KOG0022|consensus 76.7 7.8 0.00017 34.1 6.0 54 141-197 182-236 (375)
365 PRK14106 murD UDP-N-acetylmura 76.6 20 0.00044 32.8 9.3 74 153-239 4-79 (450)
366 COG5379 BtaA S-adenosylmethion 76.6 8.4 0.00018 33.6 6.1 52 144-200 56-107 (414)
367 PRK07831 short chain dehydroge 76.5 21 0.00046 29.7 8.8 81 152-238 15-107 (262)
368 PRK03562 glutathione-regulated 76.4 6.9 0.00015 37.9 6.3 67 155-236 401-472 (621)
369 PF03721 UDPG_MGDP_dh_N: UDP-g 76.3 2.2 4.8E-05 34.4 2.5 33 163-195 7-40 (185)
370 PRK08643 acetoin reductase; Va 76.2 25 0.00054 29.2 9.0 77 154-238 2-89 (256)
371 PRK06720 hypothetical protein; 75.8 26 0.00056 27.7 8.5 79 153-239 15-104 (169)
372 PRK08703 short chain dehydroge 75.7 26 0.00056 28.7 8.9 79 153-238 5-97 (239)
373 PRK01747 mnmC bifunctional tRN 75.7 12 0.00025 36.5 7.7 90 153-243 57-182 (662)
374 PRK08589 short chain dehydroge 75.7 24 0.00051 29.8 8.9 77 153-238 5-92 (272)
375 PRK06914 short chain dehydroge 75.6 22 0.00047 30.0 8.7 79 154-238 3-91 (280)
376 PRK08277 D-mannonate oxidoredu 75.6 20 0.00044 30.2 8.4 78 153-238 9-97 (278)
377 TIGR03206 benzo_BadH 2-hydroxy 75.4 18 0.00039 29.8 7.9 78 153-238 2-90 (250)
378 PRK07904 short chain dehydroge 75.1 17 0.00036 30.5 7.7 82 150-238 4-97 (253)
379 PLN02989 cinnamyl-alcohol dehy 75.1 11 0.00023 32.8 6.7 80 153-238 4-87 (325)
380 PRK08340 glucose-1-dehydrogena 74.9 22 0.00049 29.6 8.5 74 156-238 2-86 (259)
381 PRK07109 short chain dehydroge 74.8 26 0.00056 30.9 9.1 78 153-238 7-95 (334)
382 PRK12939 short chain dehydroge 74.8 24 0.00052 28.9 8.5 78 153-238 6-94 (250)
383 PRK13394 3-hydroxybutyrate deh 74.7 22 0.00047 29.5 8.3 78 153-238 6-94 (262)
384 TIGR03366 HpnZ_proposed putati 74.7 11 0.00025 32.0 6.7 46 150-196 117-163 (280)
385 PRK07024 short chain dehydroge 74.6 21 0.00046 29.7 8.2 75 155-238 3-88 (257)
386 PRK07102 short chain dehydroge 74.5 21 0.00046 29.3 8.2 77 155-238 2-86 (243)
387 PRK09242 tropinone reductase; 74.5 27 0.00059 28.9 8.9 80 153-238 8-98 (257)
388 PRK06197 short chain dehydroge 74.2 34 0.00074 29.4 9.7 80 153-238 15-105 (306)
389 PRK06181 short chain dehydroge 74.2 20 0.00043 29.9 8.0 76 155-238 2-88 (263)
390 TIGR03201 dearomat_had 6-hydro 74.1 11 0.00024 33.2 6.6 45 150-196 163-208 (349)
391 PRK05650 short chain dehydroge 74.0 19 0.00042 30.2 7.9 75 156-238 2-87 (270)
392 KOG2912|consensus 73.9 9.2 0.0002 33.7 5.7 76 157-238 106-188 (419)
393 PRK12826 3-ketoacyl-(acyl-carr 73.5 21 0.00045 29.3 7.9 78 153-238 5-93 (251)
394 PRK06113 7-alpha-hydroxysteroi 73.5 21 0.00045 29.7 7.9 78 153-238 10-98 (255)
395 PRK07889 enoyl-(acyl carrier p 73.4 12 0.00027 31.3 6.5 76 153-238 6-95 (256)
396 PRK09291 short chain dehydroge 73.0 20 0.00044 29.6 7.7 76 155-238 3-83 (257)
397 PRK08085 gluconate 5-dehydroge 72.8 35 0.00076 28.2 9.1 78 153-238 8-96 (254)
398 PRK07523 gluconate 5-dehydroge 72.7 34 0.00074 28.3 9.0 78 153-238 9-97 (255)
399 PRK06200 2,3-dihydroxy-2,3-dih 72.5 24 0.00051 29.5 8.1 75 153-238 5-90 (263)
400 PRK07453 protochlorophyllide o 72.3 31 0.00068 29.9 9.0 78 153-238 5-93 (322)
401 PRK01438 murD UDP-N-acetylmura 72.1 49 0.0011 30.7 10.7 73 153-239 15-89 (480)
402 PLN02740 Alcohol dehydrogenase 72.0 12 0.00025 33.6 6.3 46 150-196 195-241 (381)
403 cd08239 THR_DH_like L-threonin 71.9 12 0.00027 32.6 6.3 46 150-196 160-206 (339)
404 PF11387 DUF2795: Protein of u 71.8 9.2 0.0002 23.1 3.8 32 7-40 8-39 (44)
405 PRK07666 fabG 3-ketoacyl-(acyl 71.7 26 0.00056 28.7 8.0 78 153-238 6-94 (239)
406 PRK07791 short chain dehydroge 71.4 33 0.00071 29.3 8.8 78 153-238 5-102 (286)
407 PF03141 Methyltransf_29: Puta 71.3 5.2 0.00011 37.3 3.8 82 155-254 367-459 (506)
408 PRK06079 enoyl-(acyl carrier p 71.1 19 0.00041 30.1 7.1 76 153-238 6-93 (252)
409 PRK07984 enoyl-(acyl carrier p 70.9 27 0.00059 29.5 8.1 78 153-238 5-94 (262)
410 TIGR00518 alaDH alanine dehydr 70.9 8 0.00017 34.8 5.0 42 153-196 166-208 (370)
411 PRK06124 gluconate 5-dehydroge 70.5 35 0.00076 28.2 8.6 78 153-238 10-98 (256)
412 cd05188 MDR Medium chain reduc 70.4 18 0.0004 29.8 6.9 45 150-196 131-176 (271)
413 cd00401 AdoHcyase S-adenosyl-L 70.4 9.9 0.00021 34.8 5.5 43 152-196 200-243 (413)
414 KOG1371|consensus 70.4 9.5 0.00021 33.7 5.0 87 154-245 2-94 (343)
415 PRK07231 fabG 3-ketoacyl-(acyl 70.4 31 0.00066 28.3 8.2 77 153-238 4-91 (251)
416 COG5459 Predicted rRNA methyla 69.6 4.5 9.8E-05 36.1 2.9 43 154-196 114-156 (484)
417 PRK12429 3-hydroxybutyrate deh 69.5 52 0.0011 27.0 9.5 78 153-238 3-91 (258)
418 TIGR02818 adh_III_F_hyde S-(hy 69.4 20 0.00043 31.9 7.2 46 150-196 182-228 (368)
419 TIGR02622 CDP_4_6_dhtase CDP-g 69.2 15 0.00032 32.4 6.3 77 153-238 3-85 (349)
420 COG4017 Uncharacterized protei 69.1 26 0.00057 28.7 6.9 76 150-246 41-117 (254)
421 KOG1209|consensus 69.1 26 0.00055 29.4 7.0 74 153-239 6-92 (289)
422 COG1062 AdhC Zn-dependent alco 68.7 19 0.00041 32.1 6.6 55 140-197 174-229 (366)
423 PRK08415 enoyl-(acyl carrier p 68.5 39 0.00084 28.7 8.6 78 153-238 4-93 (274)
424 PRK08690 enoyl-(acyl carrier p 68.1 30 0.00066 29.0 7.8 79 153-239 5-95 (261)
425 PLN02662 cinnamyl-alcohol dehy 68.0 24 0.00052 30.4 7.3 80 153-238 3-86 (322)
426 TIGR03451 mycoS_dep_FDH mycoth 67.9 17 0.00036 32.2 6.4 46 150-196 173-219 (358)
427 PRK08267 short chain dehydroge 67.8 32 0.00068 28.6 7.8 74 155-238 2-87 (260)
428 PRK05872 short chain dehydroge 67.7 37 0.0008 29.1 8.4 77 153-238 8-95 (296)
429 TIGR01832 kduD 2-deoxy-D-gluco 67.6 37 0.00081 27.8 8.1 76 153-238 4-90 (248)
430 TIGR01963 PHB_DH 3-hydroxybuty 67.5 46 0.00099 27.3 8.7 76 155-238 2-88 (255)
431 PRK07067 sorbitol dehydrogenas 67.5 23 0.00051 29.4 6.9 75 153-238 5-90 (257)
432 PRK05875 short chain dehydroge 67.5 33 0.00072 28.8 7.9 79 153-237 6-95 (276)
433 PF12242 Eno-Rase_NADH_b: NAD( 67.0 14 0.00031 25.3 4.3 37 151-187 36-73 (78)
434 PLN02896 cinnamyl-alcohol dehy 67.0 25 0.00054 31.0 7.3 78 152-238 8-89 (353)
435 PRK05855 short chain dehydroge 66.8 39 0.00085 31.7 9.0 77 154-238 315-402 (582)
436 cd08281 liver_ADH_like1 Zinc-d 66.7 19 0.00042 32.0 6.6 46 150-196 188-234 (371)
437 PRK08594 enoyl-(acyl carrier p 66.7 33 0.00071 28.8 7.7 80 153-238 6-97 (257)
438 PRK05653 fabG 3-ketoacyl-(acyl 66.4 37 0.0008 27.6 7.9 78 153-238 4-92 (246)
439 PRK12481 2-deoxy-D-gluconate 3 66.3 43 0.00094 27.8 8.3 76 153-238 7-93 (251)
440 PRK05717 oxidoreductase; Valid 66.0 35 0.00076 28.3 7.7 76 153-239 9-95 (255)
441 PRK08265 short chain dehydroge 65.6 38 0.00083 28.3 7.9 75 153-238 5-90 (261)
442 PRK06196 oxidoreductase; Provi 65.5 50 0.0011 28.5 8.8 74 153-238 25-109 (315)
443 PRK12384 sorbitol-6-phosphate 65.3 46 0.001 27.5 8.3 79 154-238 2-91 (259)
444 PLN03209 translocon at the inn 64.7 35 0.00077 32.7 8.0 87 150-238 76-169 (576)
445 TIGR03589 PseB UDP-N-acetylglu 64.7 22 0.00048 31.1 6.4 78 153-240 3-86 (324)
446 cd01483 E1_enzyme_family Super 64.7 57 0.0012 24.6 8.1 89 156-251 1-112 (143)
447 cd00757 ThiF_MoeB_HesA_family 64.3 30 0.00065 28.7 6.8 78 153-237 20-120 (228)
448 PRK06138 short chain dehydroge 64.3 38 0.00083 27.8 7.6 77 153-238 4-91 (252)
449 PF00106 adh_short: short chai 64.2 41 0.00088 25.6 7.3 75 156-238 2-90 (167)
450 PRK07454 short chain dehydroge 64.2 63 0.0014 26.4 8.9 78 153-238 5-93 (241)
451 PLN02253 xanthoxin dehydrogena 64.1 31 0.00068 29.0 7.2 77 153-238 17-104 (280)
452 PRK09496 trkA potassium transp 64.1 50 0.0011 30.2 8.9 68 156-237 2-74 (453)
453 PRK06935 2-deoxy-D-gluconate 3 63.9 55 0.0012 27.1 8.5 77 153-238 14-101 (258)
454 PLN02668 indole-3-acetate carb 63.8 5.6 0.00012 36.0 2.5 18 154-171 64-81 (386)
455 PRK08226 short chain dehydroge 63.2 42 0.00091 27.9 7.7 77 153-238 5-92 (263)
456 PRK07806 short chain dehydroge 62.9 59 0.0013 26.7 8.5 78 153-238 5-94 (248)
457 PRK12748 3-ketoacyl-(acyl-carr 62.7 51 0.0011 27.3 8.1 78 153-238 4-105 (256)
458 PRK05786 fabG 3-ketoacyl-(acyl 62.7 58 0.0013 26.4 8.3 77 153-238 4-91 (238)
459 PRK07576 short chain dehydroge 62.6 60 0.0013 27.2 8.5 77 153-237 8-95 (264)
460 PRK12475 thiamine/molybdopteri 62.6 48 0.001 29.5 8.2 77 153-236 23-124 (338)
461 PRK07792 fabG 3-ketoacyl-(acyl 62.5 65 0.0014 27.8 8.9 78 153-238 11-99 (306)
462 PLN03154 putative allyl alcoho 62.0 32 0.0007 30.4 7.0 45 150-196 155-201 (348)
463 PLN02427 UDP-apiose/xylose syn 61.9 20 0.00044 32.0 5.8 79 153-238 13-96 (386)
464 PRK08628 short chain dehydroge 61.9 90 0.002 25.7 10.2 77 153-238 6-93 (258)
465 PRK07688 thiamine/molybdopteri 61.7 47 0.001 29.5 7.9 78 153-237 23-125 (339)
466 PRK05565 fabG 3-ketoacyl-(acyl 61.7 44 0.00095 27.2 7.5 77 154-238 5-93 (247)
467 PLN02657 3,8-divinyl protochlo 61.6 22 0.00048 32.1 6.0 79 151-237 57-145 (390)
468 PRK07326 short chain dehydroge 61.6 63 0.0014 26.2 8.4 77 153-238 5-92 (237)
469 PRK15181 Vi polysaccharide bio 61.4 29 0.00064 30.6 6.7 84 153-240 14-102 (348)
470 PLN02586 probable cinnamyl alc 61.3 34 0.00073 30.4 7.1 39 151-191 181-220 (360)
471 COG1086 Predicted nucleoside-d 61.1 49 0.0011 31.6 8.1 85 153-243 249-340 (588)
472 COG0771 MurD UDP-N-acetylmuram 61.1 48 0.001 30.8 8.0 82 154-248 7-89 (448)
473 PF02737 3HCDH_N: 3-hydroxyacy 61.1 14 0.00031 29.5 4.2 42 157-200 2-44 (180)
474 PRK06482 short chain dehydroge 61.0 52 0.0011 27.6 8.0 73 155-238 3-86 (276)
475 PRK08264 short chain dehydroge 61.0 31 0.00066 28.2 6.4 71 153-238 5-83 (238)
476 PRK12935 acetoacetyl-CoA reduc 61.0 53 0.0011 26.9 7.8 78 153-238 5-94 (247)
477 PRK08762 molybdopterin biosynt 61.0 43 0.00094 30.1 7.7 77 153-236 134-233 (376)
478 cd08301 alcohol_DH_plants Plan 60.9 34 0.00073 30.3 7.0 46 150-196 184-230 (369)
479 PRK06500 short chain dehydroge 60.7 56 0.0012 26.7 7.9 75 153-238 5-90 (249)
480 PRK06505 enoyl-(acyl carrier p 60.6 54 0.0012 27.7 8.0 78 153-238 6-95 (271)
481 PRK08324 short chain dehydroge 60.5 49 0.0011 32.3 8.5 77 153-238 421-508 (681)
482 PLN02827 Alcohol dehydrogenase 60.4 21 0.00046 31.9 5.6 46 150-196 190-236 (378)
483 PRK08303 short chain dehydroge 60.2 64 0.0014 28.0 8.5 76 153-236 7-103 (305)
484 cd08300 alcohol_DH_class_III c 60.1 38 0.00083 30.0 7.2 46 150-196 183-229 (368)
485 PRK06603 enoyl-(acyl carrier p 60.0 64 0.0014 27.0 8.3 78 153-238 7-96 (260)
486 PRK10538 malonic semialdehyde 59.9 42 0.00091 27.7 7.0 72 156-238 2-84 (248)
487 PRK06997 enoyl-(acyl carrier p 59.8 53 0.0011 27.5 7.7 78 153-238 5-94 (260)
488 PF12692 Methyltransf_17: S-ad 59.6 39 0.00086 26.4 6.1 46 141-187 15-61 (160)
489 cd08238 sorbose_phosphate_red 59.5 24 0.00053 31.9 5.9 48 150-197 172-222 (410)
490 cd08255 2-desacetyl-2-hydroxye 59.4 36 0.00079 28.5 6.7 47 150-197 94-141 (277)
491 PRK07074 short chain dehydroge 59.4 53 0.0011 27.1 7.6 75 154-238 2-87 (257)
492 PRK08862 short chain dehydroge 59.1 67 0.0015 26.4 8.1 77 153-237 4-92 (227)
493 PF06690 DUF1188: Protein of u 59.0 92 0.002 26.3 8.5 83 140-245 30-113 (252)
494 PRK07370 enoyl-(acyl carrier p 59.0 50 0.0011 27.6 7.4 79 153-238 5-97 (258)
495 PRK08159 enoyl-(acyl carrier p 59.0 61 0.0013 27.4 8.0 78 153-238 9-98 (272)
496 TIGR01289 LPOR light-dependent 58.9 76 0.0017 27.5 8.8 77 154-238 3-91 (314)
497 PF00107 ADH_zinc_N: Zinc-bind 58.5 13 0.00028 27.3 3.4 33 163-197 1-33 (130)
498 cd08277 liver_alcohol_DH_like 58.4 39 0.00085 29.9 7.0 46 150-196 181-227 (365)
499 KOG2811|consensus 58.3 23 0.00049 31.9 5.1 45 153-198 182-229 (420)
500 PRK09135 pteridine reductase; 57.7 80 0.0017 25.7 8.4 79 153-238 5-95 (249)
No 1
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.97 E-value=7.5e-30 Score=210.05 Aligned_cols=159 Identities=30% Similarity=0.455 Sum_probs=136.7
Q ss_pred ChHHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCCCccc
Q psy425 8 SNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKGSKSI 82 (254)
Q Consensus 8 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (254)
+|+.|+++|++.|.+.|++|++||+.|||+.|+|.. |.|.+.+++.++.+
T Consensus 1 ~~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~i------------------------- 55 (209)
T PF01135_consen 1 SNKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTI------------------------- 55 (209)
T ss_dssp CHHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE-------------------------
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeec-------------------------
Confidence 588999999999988999999999999999999995 89998888888777
Q ss_pred ccccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcC
Q psy425 83 FQTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGF 162 (254)
Q Consensus 83 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~ 162 (254)
++|.+ .+.+++.+ .+++|++||||||
T Consensus 56 --------------------------------------s~P~~--------------~a~~l~~L--~l~pg~~VLeIGt 81 (209)
T PF01135_consen 56 --------------------------------------SAPSM--------------VARMLEAL--DLKPGDRVLEIGT 81 (209)
T ss_dssp ----------------------------------------HHH--------------HHHHHHHT--TC-TT-EEEEES-
T ss_pred --------------------------------------hHHHH--------------HHHHHHHH--hcCCCCEEEEecC
Confidence 78899 99999999 8999999999999
Q ss_pred CCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCch
Q psy425 163 GSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242 (254)
Q Consensus 163 G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~ 242 (254)
||||.+..+++++++.++|+++|.++++++.|++++... +..||+ ++++|....++..++||+|+++++.+.+|
T Consensus 82 GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~-----~~~nv~-~~~gdg~~g~~~~apfD~I~v~~a~~~ip 155 (209)
T PF01135_consen 82 GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL-----GIDNVE-VVVGDGSEGWPEEAPFDRIIVTAAVPEIP 155 (209)
T ss_dssp TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH-----TTHSEE-EEES-GGGTTGGG-SEEEEEESSBBSS--
T ss_pred CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh-----ccCcee-EEEcchhhccccCCCcCEEEEeeccchHH
Confidence 999999999999988889999999999999999999985 466999 99999998888888999999999999999
Q ss_pred HHHHHHHHh
Q psy425 243 IEVSKLCRS 251 (254)
Q Consensus 243 ~~l~~~lr~ 251 (254)
..|.++|++
T Consensus 156 ~~l~~qL~~ 164 (209)
T PF01135_consen 156 EALLEQLKP 164 (209)
T ss_dssp HHHHHTEEE
T ss_pred HHHHHhcCC
Confidence 999999864
No 2
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.9e-29 Score=202.34 Aligned_cols=153 Identities=29% Similarity=0.462 Sum_probs=144.2
Q ss_pred HHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCCCccccc
Q psy425 10 QQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKGSKSIFQ 84 (254)
Q Consensus 10 ~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (254)
++++++|+..|+ .++++++||..||||.|+|+. |.|.+++++.++++
T Consensus 4 ~~l~~~lr~~~i-~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqti--------------------------- 55 (209)
T COG2518 4 RMLVERLRTEGI-TDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTI--------------------------- 55 (209)
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCcee---------------------------
Confidence 679999999996 679999999999999999986 99999999999999
Q ss_pred ccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCCC
Q psy425 85 TYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGS 164 (254)
Q Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~ 164 (254)
++|++ .+.|++.| .+.++++||||||||
T Consensus 56 ------------------------------------s~P~~--------------vA~m~~~L--~~~~g~~VLEIGtGs 83 (209)
T COG2518 56 ------------------------------------SAPHM--------------VARMLQLL--ELKPGDRVLEIGTGS 83 (209)
T ss_pred ------------------------------------cCcHH--------------HHHHHHHh--CCCCCCeEEEECCCc
Confidence 78889 99999999 899999999999999
Q ss_pred ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchHH
Q psy425 165 GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 165 G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
||.+..||+..+ +|+++|..+++.+.|++|+... +..||. ++++|...+++..++||+|++.++...+|+.
T Consensus 84 GY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~l-----g~~nV~-v~~gDG~~G~~~~aPyD~I~Vtaaa~~vP~~ 154 (209)
T COG2518 84 GYQAAVLARLVG---RVVSIERIEELAEQARRNLETL-----GYENVT-VRHGDGSKGWPEEAPYDRIIVTAAAPEVPEA 154 (209)
T ss_pred hHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHc-----CCCceE-EEECCcccCCCCCCCcCEEEEeeccCCCCHH
Confidence 999999999986 5999999999999999999995 577899 9999999999999999999999999999999
Q ss_pred HHHHHHh
Q psy425 245 VSKLCRS 251 (254)
Q Consensus 245 l~~~lr~ 251 (254)
|.+||+.
T Consensus 155 Ll~QL~~ 161 (209)
T COG2518 155 LLDQLKP 161 (209)
T ss_pred HHHhccc
Confidence 9999975
No 3
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.95 E-value=3.5e-26 Score=189.68 Aligned_cols=159 Identities=27% Similarity=0.447 Sum_probs=141.3
Q ss_pred CChHHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCCCcc
Q psy425 7 TSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKGSKS 81 (254)
Q Consensus 7 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
+.++.|+++|++.|.++|++|++||+.|||+.|+|.. |.|.+.+++.++.+
T Consensus 4 ~~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~------------------------ 59 (212)
T PRK13942 4 EEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTI------------------------ 59 (212)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEe------------------------
Confidence 4568899999999989999999999999999999995 88888888777666
Q ss_pred cccccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEc
Q psy425 82 IFQTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLG 161 (254)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG 161 (254)
++|.+ .+.+++.+ .+.++.+|||||
T Consensus 60 ---------------------------------------~~p~~--------------~~~~~~~l--~~~~g~~VLdIG 84 (212)
T PRK13942 60 ---------------------------------------SAIHM--------------VAIMCELL--DLKEGMKVLEIG 84 (212)
T ss_pred ---------------------------------------CcHHH--------------HHHHHHHc--CCCCcCEEEEEC
Confidence 67888 89999999 889999999999
Q ss_pred CCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCc
Q psy425 162 FGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHI 241 (254)
Q Consensus 162 ~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 241 (254)
||+|+.+..+++..++.++|+++|+++++++.|++++... +..+++ ++++|+...++..++||+|++..+++++
T Consensus 85 ~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~-----g~~~v~-~~~gd~~~~~~~~~~fD~I~~~~~~~~~ 158 (212)
T PRK13942 85 TGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL-----GYDNVE-VIVGDGTLGYEENAPYDRIYVTAAGPDI 158 (212)
T ss_pred CcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCCeE-EEECCcccCCCcCCCcCEEEECCCcccc
Confidence 9999999999999876679999999999999999999885 456899 9999998766666789999999999999
Q ss_pred hHHHHHHHH
Q psy425 242 PIEVSKLCR 250 (254)
Q Consensus 242 ~~~l~~~lr 250 (254)
|..+.++|+
T Consensus 159 ~~~l~~~Lk 167 (212)
T PRK13942 159 PKPLIEQLK 167 (212)
T ss_pred hHHHHHhhC
Confidence 988887765
No 4
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.94 E-value=2.6e-25 Score=183.58 Aligned_cols=158 Identities=22% Similarity=0.340 Sum_probs=133.7
Q ss_pred hHHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCCCcccc
Q psy425 9 NQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKGSKSIF 83 (254)
Q Consensus 9 ~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (254)
++.|+++|+..|.+.|++|++||+.|||+.|+|.. |.|.+.++..+..+
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~-------------------------- 55 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATI-------------------------- 55 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEe--------------------------
Confidence 46799999999988999999999999999999985 67776666655554
Q ss_pred cccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCC
Q psy425 84 QTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFG 163 (254)
Q Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G 163 (254)
+.|.+ .+.+++.+ .+.++.+|||+|||
T Consensus 56 -------------------------------------~~p~~--------------~~~~~~~l--~~~~~~~VLDiG~G 82 (205)
T PRK13944 56 -------------------------------------SAPHM--------------VAMMCELI--EPRPGMKILEVGTG 82 (205)
T ss_pred -------------------------------------chHHH--------------HHHHHHhc--CCCCCCEEEEECcC
Confidence 46667 78888888 77889999999999
Q ss_pred CChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchH
Q psy425 164 SGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 164 ~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
+|+.+..+++..++.++|+++|+++++++.|++++..++ ...+++ ++++|+...++..++||+|+++.++.++|+
T Consensus 83 sG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~----~~~~v~-~~~~d~~~~~~~~~~fD~Ii~~~~~~~~~~ 157 (205)
T PRK13944 83 SGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG----YWGVVE-VYHGDGKRGLEKHAPFDAIIVTAAASTIPS 157 (205)
T ss_pred ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC----CCCcEE-EEECCcccCCccCCCccEEEEccCcchhhH
Confidence 999999999987656799999999999999999998753 224689 999999876555668999999999999998
Q ss_pred HHHHHHH
Q psy425 244 EVSKLCR 250 (254)
Q Consensus 244 ~l~~~lr 250 (254)
.+.++|+
T Consensus 158 ~l~~~L~ 164 (205)
T PRK13944 158 ALVRQLK 164 (205)
T ss_pred HHHHhcC
Confidence 7776664
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.94 E-value=3.5e-25 Score=184.15 Aligned_cols=162 Identities=27% Similarity=0.464 Sum_probs=140.2
Q ss_pred cCCCChHHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCC
Q psy425 4 YDITSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKG 78 (254)
Q Consensus 4 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
+...++++|+++|+..|.+.|++|.+||+.|||+.|+|.. |.+.+.+++.+..+
T Consensus 2 ~~~~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~--------------------- 60 (215)
T TIGR00080 2 DLESQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTI--------------------- 60 (215)
T ss_pred ChhHHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEe---------------------
Confidence 3456789999999999988999999999999999999984 77887777766555
Q ss_pred CcccccccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEE
Q psy425 79 SKSIFQTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVL 158 (254)
Q Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VL 158 (254)
+.|.+ .+.+++.+ .+.++.+||
T Consensus 61 ------------------------------------------~~p~~--------------~~~~~~~l--~~~~~~~VL 82 (215)
T TIGR00080 61 ------------------------------------------SAPHM--------------VAMMTELL--ELKPGMKVL 82 (215)
T ss_pred ------------------------------------------chHHH--------------HHHHHHHh--CCCCcCEEE
Confidence 56777 88889988 788999999
Q ss_pred EEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcC
Q psy425 159 DLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 159 DiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~ 238 (254)
|||||+|+.+..+++..++.++|+++|+++++++.|++++..+ +..+++ ++++|+........+||+|++..+.
T Consensus 83 DiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~-----g~~~v~-~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 83 EIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL-----GLDNVI-VIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCeE-EEECCcccCCcccCCCCEEEEcCCc
Confidence 9999999999999999876678999999999999999999885 457899 9999998655555679999999999
Q ss_pred cCchHHHHHHHH
Q psy425 239 KHIPIEVSKLCR 250 (254)
Q Consensus 239 ~~~~~~l~~~lr 250 (254)
.++++.+.++|+
T Consensus 157 ~~~~~~~~~~L~ 168 (215)
T TIGR00080 157 PKIPEALIDQLK 168 (215)
T ss_pred ccccHHHHHhcC
Confidence 999987777664
No 6
>KOG1661|consensus
Probab=99.92 E-value=2.1e-24 Score=172.51 Aligned_cols=170 Identities=35% Similarity=0.614 Sum_probs=151.9
Q ss_pred cCCCChHHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCC
Q psy425 4 YDITSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKG 78 (254)
Q Consensus 4 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
..+++|+.++++|+++++|.+.++.+||+.++|..|.|.. |.|.|+.+|-+.++
T Consensus 5 s~gs~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~i--------------------- 63 (237)
T KOG1661|consen 5 SSGSDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTI--------------------- 63 (237)
T ss_pred ccCcchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEE---------------------
Confidence 6788999999999999999999999999999999999993 88888888876666
Q ss_pred CcccccccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEE
Q psy425 79 SKSIFQTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVL 158 (254)
Q Consensus 79 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VL 158 (254)
|+|++ ++.+++.|..+++||.+.|
T Consensus 64 ------------------------------------------SAp~m--------------ha~~le~L~~~L~pG~s~L 87 (237)
T KOG1661|consen 64 ------------------------------------------SAPHM--------------HATALEYLDDHLQPGASFL 87 (237)
T ss_pred ------------------------------------------cchHH--------------HHHHHHHHHHhhccCccee
Confidence 89999 9999999976799999999
Q ss_pred EEcCCCChHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHhhC-----CCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 159 DLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISY-----PKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 159 DiG~G~G~~t~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~-----~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
|+|+|||+++..++.+.+..+. ++|||..+++++.+++|+.+.- .+.+...++. ++.+|....+++.++||+|
T Consensus 88 dvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~-ivvGDgr~g~~e~a~YDaI 166 (237)
T KOG1661|consen 88 DVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELS-IVVGDGRKGYAEQAPYDAI 166 (237)
T ss_pred ecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceE-EEeCCccccCCccCCcceE
Confidence 9999999999999988877665 4999999999999999998752 1223456788 9999999999999999999
Q ss_pred EecCcCcCchHHHHHHHHh
Q psy425 233 HFGSGVKHIPIEVSKLCRS 251 (254)
Q Consensus 233 ~~~~~~~~~~~~l~~~lr~ 251 (254)
+++++...+|.++.++|++
T Consensus 167 hvGAaa~~~pq~l~dqL~~ 185 (237)
T KOG1661|consen 167 HVGAAASELPQELLDQLKP 185 (237)
T ss_pred EEccCccccHHHHHHhhcc
Confidence 9999999999999999865
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.88 E-value=1.5e-21 Score=162.00 Aligned_cols=156 Identities=27% Similarity=0.373 Sum_probs=130.6
Q ss_pred CCChHHHHHHHHHcCCcCcHHHHHHHHhccccccccCC-----CCCCCCCcCccccccCCCccCccchhhhhhhhcCCCc
Q psy425 6 ITSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKGSK 80 (254)
Q Consensus 6 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~-----y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
...++.|+++|+..| +.++.+.++|..+||+.|+|+. |.+.+.+++.+..+
T Consensus 6 ~~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~----------------------- 61 (212)
T PRK00312 6 SERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTI----------------------- 61 (212)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCee-----------------------
Confidence 345789999999999 7899999999999999999964 66666666555444
Q ss_pred ccccccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEE
Q psy425 81 SIFQTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDL 160 (254)
Q Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDi 160 (254)
+.|.+ .+.+++.+ .+.++.+|||+
T Consensus 62 ----------------------------------------~~p~~--------------~~~l~~~l--~~~~~~~VLei 85 (212)
T PRK00312 62 ----------------------------------------SQPYM--------------VARMTELL--ELKPGDRVLEI 85 (212)
T ss_pred ----------------------------------------CcHHH--------------HHHHHHhc--CCCCCCEEEEE
Confidence 46667 78888888 78899999999
Q ss_pred cCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcC
Q psy425 161 GFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKH 240 (254)
Q Consensus 161 G~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~ 240 (254)
|||+|+.+..+++..+ +|+++|+++++++.|++++... +..+++ +..+|.....+..++||+|++..++++
T Consensus 86 G~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~-----~~~~v~-~~~~d~~~~~~~~~~fD~I~~~~~~~~ 156 (212)
T PRK00312 86 GTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQL-----GLHNVS-VRHGDGWKGWPAYAPFDRILVTAAAPE 156 (212)
T ss_pred CCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHC-----CCCceE-EEECCcccCCCcCCCcCEEEEccCchh
Confidence 9999999998888753 6999999999999999999885 456799 999998765555567999999999999
Q ss_pred chHHHHHHHH
Q psy425 241 IPIEVSKLCR 250 (254)
Q Consensus 241 ~~~~l~~~lr 250 (254)
++..+.++|+
T Consensus 157 ~~~~l~~~L~ 166 (212)
T PRK00312 157 IPRALLEQLK 166 (212)
T ss_pred hhHHHHHhcC
Confidence 9887766654
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.87 E-value=6.1e-21 Score=166.71 Aligned_cols=158 Identities=23% Similarity=0.324 Sum_probs=124.7
Q ss_pred hHHHHHHHHHcCCcCcHHHHHHHHhccccccccCCC------CCCCCCc-CccccccCCCccCccchhhhhhhhcCCCcc
Q psy425 9 NQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDGY------IDSPHNF-GTNSIVERPSYVSSCSIWYLVICLGKGSKS 81 (254)
Q Consensus 9 ~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~~~~y------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (254)
++.|++.|+..|+ .| +|++||..||||.|+|..+ .|.+++. ..+..
T Consensus 7 ~~~lv~~l~~~gv-~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~------------------------- 59 (322)
T PRK13943 7 REKLFWILKKYGI-SD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEE------------------------- 59 (322)
T ss_pred HHHHHHHHHHcCC-cH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcc-------------------------
Confidence 4789999999995 66 9999999999999999853 3333221 11100
Q ss_pred cccccceecCCCcccccccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEc
Q psy425 82 IFQTYGIVSGNKGIHFLPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLG 161 (254)
Q Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG 161 (254)
.+..+.|.+ .+.+++.+ .++++.+|||+|
T Consensus 60 -----------------------------------~~~~~~p~l--------------~a~ll~~L--~i~~g~~VLDIG 88 (322)
T PRK13943 60 -----------------------------------YSTSSQPSL--------------MALFMEWV--GLDKGMRVLEIG 88 (322)
T ss_pred -----------------------------------cccCCcHHH--------------HHHHHHhc--CCCCCCEEEEEe
Confidence 001145666 78888888 788999999999
Q ss_pred CCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCc
Q psy425 162 FGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHI 241 (254)
Q Consensus 162 ~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 241 (254)
||+|+++..+++..+..+.|+++|+++++++.|++++..+ +..++. ++++|+.......++||+|++..+++++
T Consensus 89 ~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-----g~~nV~-~i~gD~~~~~~~~~~fD~Ii~~~g~~~i 162 (322)
T PRK13943 89 GGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-----GIENVI-FVCGDGYYGVPEFAPYDVIFVTVGVDEV 162 (322)
T ss_pred CCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCcEE-EEeCChhhcccccCCccEEEECCchHHh
Confidence 9999999999998765568999999999999999999885 456899 9999987655555679999999988888
Q ss_pred hHHHHHHHH
Q psy425 242 PIEVSKLCR 250 (254)
Q Consensus 242 ~~~l~~~lr 250 (254)
|+.+.++|+
T Consensus 163 p~~~~~~Lk 171 (322)
T PRK13943 163 PETWFTQLK 171 (322)
T ss_pred HHHHHHhcC
Confidence 887766654
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.76 E-value=7e-18 Score=140.73 Aligned_cols=117 Identities=23% Similarity=0.349 Sum_probs=101.2
Q ss_pred cccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCc
Q psy425 126 HSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKL 205 (254)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~ 205 (254)
..+|.+.+..| ...+++.+ ...+|.+|||+|||||.++..+++..+ .++|+|+|+|+.|++.|++++...
T Consensus 29 ~~~S~g~~~~W---r~~~i~~~--~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~---- 98 (238)
T COG2226 29 DLMSFGLHRLW---RRALISLL--GIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKK---- 98 (238)
T ss_pred ccccCcchHHH---HHHHHHhh--CCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhcc----
Confidence 34678888889 56667777 566999999999999999999999987 789999999999999999999874
Q ss_pred ccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCc---hHHHHHHHHhhcC
Q psy425 206 YKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHI---PIEVSKLCRSQKK 254 (254)
Q Consensus 206 ~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~---~~~l~~~lr~lk~ 254 (254)
+..+++ |+++|++..+.++++||+|.++.+++++ +.++.|..|+|||
T Consensus 99 -~~~~i~-fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKp 148 (238)
T COG2226 99 -GVQNVE-FVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP 148 (238)
T ss_pred -CccceE-EEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcC
Confidence 344599 9999999877888889999999999655 5579999999997
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.72 E-value=1.9e-17 Score=138.92 Aligned_cols=117 Identities=31% Similarity=0.426 Sum_probs=76.8
Q ss_pred ccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcc
Q psy425 127 SLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLY 206 (254)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~ 206 (254)
.++.+.++.|++ .+++.+ ...+|.+|||+|||||..+..+++..++.++|+|+|+|++|++.|++++...
T Consensus 26 ~ls~g~~~~wr~---~~~~~~--~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~----- 95 (233)
T PF01209_consen 26 LLSFGQDRRWRR---KLIKLL--GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE----- 95 (233)
T ss_dssp -----------S---HHHHHH--T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-----
T ss_pred ccCCcHHHHHHH---HHHhcc--CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-----
Confidence 357778888854 556666 6778999999999999999999998877889999999999999999999874
Q ss_pred cCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCch---HHHHHHHHhhcC
Q psy425 207 KLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP---IEVSKLCRSQKK 254 (254)
Q Consensus 207 ~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~---~~l~~~lr~lk~ 254 (254)
...+|+ ++++|++..+.++++||+|++..++++++ ..+.|..|+|||
T Consensus 96 ~~~~i~-~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkP 145 (233)
T PF01209_consen 96 GLQNIE-FVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKP 145 (233)
T ss_dssp T--SEE-EEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEE
T ss_pred CCCCee-EEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCC
Confidence 345899 99999997767778899999999997665 468888898885
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=8.7e-15 Score=108.74 Aligned_cols=84 Identities=26% Similarity=0.390 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
|+.+|||+|||+|.++..+++.. +..+|+|+|+++++++.|++++...+ ..++++ ++++|+........+||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~i~-~~~~d~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEG----LSDRIT-FVQGDAEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTT----TTTTEE-EEESCCHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcC----CCCCeE-EEECccccCcccCCCCCEE
Confidence 68899999999999999999964 45689999999999999999995543 467999 9999992112234469999
Q ss_pred EecC-cCcCch
Q psy425 233 HFGS-GVKHIP 242 (254)
Q Consensus 233 ~~~~-~~~~~~ 242 (254)
++.. +++++.
T Consensus 75 ~~~~~~~~~~~ 85 (112)
T PF12847_consen 75 ICSGFTLHFLL 85 (112)
T ss_dssp EECSGSGGGCC
T ss_pred EECCCcccccc
Confidence 9999 555443
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.61 E-value=1e-14 Score=124.68 Aligned_cols=108 Identities=21% Similarity=0.283 Sum_probs=85.2
Q ss_pred HHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC
Q psy425 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK 221 (254)
Q Consensus 142 ~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~ 221 (254)
.+++.+ .+.++.+|||+|||+|.++..+++..++.++|+|+|+|++|++.|+++...... ....+++ ++++|+..
T Consensus 64 ~~~~~~--~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~--~~~~~i~-~~~~d~~~ 138 (261)
T PLN02233 64 MAVSWS--GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK--SCYKNIE-WIEGDATD 138 (261)
T ss_pred HHHHHh--CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh--ccCCCeE-EEEccccc
Confidence 334455 677899999999999999999998876667899999999999999887542100 1245899 99999987
Q ss_pred CCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 222 PYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 222 ~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.+.++++||+|+++.+++++++ .+.+..|+|||
T Consensus 139 lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkp 174 (261)
T PLN02233 139 LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKP 174 (261)
T ss_pred CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCc
Confidence 5556677999999999987754 47777788875
No 13
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.60 E-value=1.1e-14 Score=123.84 Aligned_cols=103 Identities=22% Similarity=0.182 Sum_probs=84.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.||++|||||||.|.++..+|+..+. +|+|+++|+++.+.+++++...| ...+++ +...|.
T Consensus 61 ~~~~~~kl--~L~~G~~lLDiGCGWG~l~~~aA~~y~v--~V~GvTlS~~Q~~~~~~r~~~~g----l~~~v~-v~l~d~ 131 (283)
T COG2230 61 LDLILEKL--GLKPGMTLLDIGCGWGGLAIYAAEEYGV--TVVGVTLSEEQLAYAEKRIAARG----LEDNVE-VRLQDY 131 (283)
T ss_pred HHHHHHhc--CCCCCCEEEEeCCChhHHHHHHHHHcCC--EEEEeeCCHHHHHHHHHHHHHcC----CCcccE-EEeccc
Confidence 56667777 8999999999999999999999999754 89999999999999999998864 345899 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCchH-----HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI-----EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~-----~l~~~lr~lk~ 254 (254)
.+.. ++||.|++.++++|+-. -+....+.|++
T Consensus 132 rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~ 168 (283)
T COG2230 132 RDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKP 168 (283)
T ss_pred cccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCC
Confidence 7643 33999999999976643 34444455543
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=3.1e-14 Score=119.43 Aligned_cols=107 Identities=21% Similarity=0.371 Sum_probs=86.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+ .+.++.+|||+|||+|..+..+++..++.++|+|+|+++++++.|++++... ..++++ ++++|+
T Consensus 34 ~~~~l~~l--~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~v~-~~~~d~ 105 (231)
T TIGR02752 34 RKDTMKRM--NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA-----GLHNVE-LVHGNA 105 (231)
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCceE-EEEech
Confidence 45566666 6778999999999999999999998766779999999999999999998764 356899 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchHH---HHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIE---VSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~---l~~~lr~lk~ 254 (254)
.......++||+|+++.+++++++. +.+..+.||+
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~ 143 (231)
T TIGR02752 106 MELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKP 143 (231)
T ss_pred hcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCc
Confidence 7644455679999999988776543 4555566664
No 15
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=1.5e-14 Score=124.09 Aligned_cols=103 Identities=24% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+++|.+|||||||.|.++..+++..+. +|+|+.+|++..+.+++++.+.| ..++++ +..+|.
T Consensus 51 ~~~~~~~~--~l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~~~~~~~g----l~~~v~-v~~~D~ 121 (273)
T PF02353_consen 51 LDLLCEKL--GLKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYARERIREAG----LEDRVE-VRLQDY 121 (273)
T ss_dssp HHHHHTTT--T--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST----SSSTEE-EEES-G
T ss_pred HHHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHHHHHHhcC----CCCceE-EEEeec
Confidence 55666666 7899999999999999999999999755 89999999999999999998865 456799 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCch-----HHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIP-----IEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~-----~~l~~~lr~lk~ 254 (254)
.+.. .+||.|++..+++|+. .-+.+..+.|||
T Consensus 122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp 158 (273)
T PF02353_consen 122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKP 158 (273)
T ss_dssp GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSET
T ss_pred cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCC
Confidence 7532 2799999999999884 224444455554
No 16
>KOG1540|consensus
Probab=99.57 E-value=3.1e-14 Score=117.66 Aligned_cols=120 Identities=22% Similarity=0.251 Sum_probs=101.5
Q ss_pred cccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCC-----CEEEEEeCCHHHHHHHHHHHHh
Q psy425 126 HSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDK-----GHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~-----~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
+.++.+.+++| ....+..| ...++.++||++||||.+++.+.+..+.+ ++|+.+|++|+|++.++++..+
T Consensus 78 D~mSlGiHRlW---Kd~~v~~L--~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 78 DAMSLGIHRLW---KDMFVSKL--GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHhhcchhHHH---HHHhhhcc--CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 34688889999 66778888 77889999999999999999999988653 7899999999999999999866
Q ss_pred hCCCcccC-CCeeEEEEcCCCCCCcCCCCccEEEecCcC---cCchHHHHHHHHhhcC
Q psy425 201 SYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGV---KHIPIEVSKLCRSQKK 254 (254)
Q Consensus 201 ~~~~~~~~-~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~---~~~~~~l~~~lr~lk~ 254 (254)
.+ +.. ..+. ++.+|+++.+.++..||..++..++ .|++..+.|++|+|||
T Consensus 153 ~~---l~~~~~~~-w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKp 206 (296)
T KOG1540|consen 153 RP---LKASSRVE-WVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKP 206 (296)
T ss_pred cC---CCcCCceE-EEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCC
Confidence 32 122 2488 9999999877888889999999988 5777889999999996
No 17
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.57 E-value=4e-14 Score=111.25 Aligned_cols=95 Identities=21% Similarity=0.313 Sum_probs=76.6
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCC--CCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKN--GPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~--~~f 229 (254)
+.+.+|||+|||+|.++..+++...+.++++|+|+++++++.|+++++.. +..+++ |.++|+.. .... +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~-----~~~ni~-~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL-----GLDNIE-FIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-----TSTTEE-EEESBTTC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-----cccccc-eEEeehhc-cccccCCCe
Confidence 46789999999999999999976556779999999999999999998885 456999 99999987 3321 679
Q ss_pred cEEEecCcCcCchHH---HHHHHHhhc
Q psy425 230 DVIHFGSGVKHIPIE---VSKLCRSQK 253 (254)
Q Consensus 230 D~I~~~~~~~~~~~~---l~~~lr~lk 253 (254)
|+|++..+++++++. +.+..+.||
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk 101 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLK 101 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcC
Confidence 999999999877764 344445444
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.56 E-value=7.2e-14 Score=113.47 Aligned_cols=96 Identities=25% Similarity=0.206 Sum_probs=78.2
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.++++.+|||+|||+|..+..+++.. +.++|+++|.++++++.|+++++.+ +..+++ ++++|+.+... .++|
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~-----~l~~i~-~~~~d~~~~~~-~~~f 113 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAEL-----GLKNVT-VVHGRAEEFGQ-EEKF 113 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHc-----CCCCEE-EEeccHhhCCC-CCCc
Confidence 45668999999999999999999865 4579999999999999999999886 345699 99999986444 5679
Q ss_pred cEEEecCcCcCchHHHHHHHHhhcC
Q psy425 230 DVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
|+|+++. +.+++..+.+..+.||+
T Consensus 114 DlV~~~~-~~~~~~~l~~~~~~Lkp 137 (187)
T PRK00107 114 DVVTSRA-VASLSDLVELCLPLLKP 137 (187)
T ss_pred cEEEEcc-ccCHHHHHHHHHHhcCC
Confidence 9999986 45566656666677764
No 19
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=9.5e-14 Score=110.62 Aligned_cols=104 Identities=25% Similarity=0.331 Sum_probs=88.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.+..+..| .+.++++++|||||||.++..++ +.++.++|+++|.++++++..++|+++. +.+|++ ++.+++
T Consensus 23 Ral~ls~L--~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~f-----g~~n~~-vv~g~A 93 (187)
T COG2242 23 RALTLSKL--RPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARF-----GVDNLE-VVEGDA 93 (187)
T ss_pred HHHHHHhh--CCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHh-----CCCcEE-EEeccc
Confidence 77778888 89999999999999999999999 5568899999999999999999999995 688999 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHHHhhc
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
.+.+.....||.||+++. ..++.-+......||
T Consensus 94 p~~L~~~~~~daiFIGGg-~~i~~ile~~~~~l~ 126 (187)
T COG2242 94 PEALPDLPSPDAIFIGGG-GNIEEILEAAWERLK 126 (187)
T ss_pred hHhhcCCCCCCEEEECCC-CCHHHHHHHHHHHcC
Confidence 866555446999999999 777765544445444
No 20
>PLN02244 tocopherol O-methyltransferase
Probab=99.53 E-value=1.4e-13 Score=122.00 Aligned_cols=96 Identities=21% Similarity=0.179 Sum_probs=79.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
.++.+|||||||+|.++..+++.++ .+|+|+|+++.+++.|+++....+ ...+++ ++.+|+......+++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g----~~~~v~-~~~~D~~~~~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQG----LSDKVS-FQVADALNQPFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcC----CCCceE-EEEcCcccCCCCCCCccE
Confidence 5788999999999999999998864 379999999999999999887753 345799 999999865555677999
Q ss_pred EEecCcCcCchH---HHHHHHHhhcC
Q psy425 232 IHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 232 I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
|++..+++|+++ .+.+..++|||
T Consensus 190 V~s~~~~~h~~d~~~~l~e~~rvLkp 215 (340)
T PLN02244 190 VWSMESGEHMPDKRKFVQELARVAAP 215 (340)
T ss_pred EEECCchhccCCHHHHHHHHHHHcCC
Confidence 999999988865 45666777775
No 21
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.51 E-value=1.7e-13 Score=110.87 Aligned_cols=93 Identities=17% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
++.+|||+|||+|.++..++... +.++|+++|.++++++.++++++++ +..+++ ++++|+... ...++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~-----~~~~i~-~i~~d~~~~-~~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAEL-----GLNNVE-IVNGRAEDF-QHEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHh-----CCCCeE-EEecchhhc-cccCCccEE
Confidence 48999999999999999998764 5578999999999999999998875 356799 999999864 334679999
Q ss_pred EecCcCcCchHHHHHHHHhhcC
Q psy425 233 HFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 233 ~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
+++. ++++++.+....+.||+
T Consensus 114 ~s~~-~~~~~~~~~~~~~~Lkp 134 (181)
T TIGR00138 114 TSRA-LASLNVLLELTLNLLKV 134 (181)
T ss_pred Eehh-hhCHHHHHHHHHHhcCC
Confidence 9987 67777766655666664
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=7.2e-13 Score=99.82 Aligned_cols=106 Identities=25% Similarity=0.363 Sum_probs=84.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++++... ...+++ ++.+|+
T Consensus 8 ~~~~~~~~--~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~-~~~~~~ 78 (124)
T TIGR02469 8 RALTLSKL--RLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRF-----GVSNIV-IVEGDA 78 (124)
T ss_pred HHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHh-----CCCceE-EEeccc
Confidence 55566766 677788999999999999999998863 468999999999999999998875 355788 999987
Q ss_pred CCCC-cCCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPY-KKNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~-~~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.... ....+||+|++..........+.+..+.||+
T Consensus 79 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~ 114 (124)
T TIGR02469 79 PEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRP 114 (124)
T ss_pred cccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCC
Confidence 6422 2234799999988777766667777777764
No 23
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.48 E-value=5.3e-13 Score=110.03 Aligned_cols=88 Identities=18% Similarity=0.197 Sum_probs=70.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.+.++.+|||+|||+|..+..+++.. +..+++|+|+|+++++.|+++. .++. +.++|+.. +..+++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~-~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNIN-IIQGSLFD-PFKDNFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCc-EEEeeccC-CCCCCCE
Confidence 56678899999999999999998875 3458999999999999998763 2467 88899877 3455679
Q ss_pred cEEEecCcCcCchH-HHHHHHH
Q psy425 230 DVIHFGSGVKHIPI-EVSKLCR 250 (254)
Q Consensus 230 D~I~~~~~~~~~~~-~l~~~lr 250 (254)
|+|+++++++|+++ .+.+.++
T Consensus 107 D~V~~~~vL~hl~p~~~~~~l~ 128 (204)
T TIGR03587 107 DLVLTKGVLIHINPDNLPTAYR 128 (204)
T ss_pred EEEEECChhhhCCHHHHHHHHH
Confidence 99999999988863 2334443
No 24
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.48 E-value=1.1e-12 Score=106.59 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=83.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||+|||+|.++..+++.. +.++|+++|+++++++.|++++..+ ...+++ ++.+|+
T Consensus 20 r~~~~~~l--~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~-----~~~~i~-~~~~d~ 90 (187)
T PRK08287 20 RALALSKL--ELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRF-----GCGNID-IIPGEA 90 (187)
T ss_pred HHHHHHhc--CCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHh-----CCCCeE-EEecCc
Confidence 45556666 67789999999999999999999885 5578999999999999999999875 345799 999997
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.... ..+||+|+++....+++..+.+..+.||+
T Consensus 91 ~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~ 123 (187)
T PRK08287 91 PIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHP 123 (187)
T ss_pred hhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCC
Confidence 5432 24699999988777777666666677764
No 25
>PRK05785 hypothetical protein; Provisional
Probab=99.48 E-value=4.3e-13 Score=112.34 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=78.8
Q ss_pred CCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccC
Q psy425 129 SGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKL 208 (254)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~ 208 (254)
+.+.+..|+ ..++..+.....++.+|||+|||+|..+..+++.. .++|+|+|+|++|++.|+++
T Consensus 30 s~g~~~~wr---~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~----------- 93 (226)
T PRK05785 30 SFNQDVRWR---AELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA----------- 93 (226)
T ss_pred cCCCcHHHH---HHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc-----------
Confidence 334445553 34444443233457899999999999999999885 24799999999999998763
Q ss_pred CCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 209 YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 209 ~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.. ++++|++..+.++++||+|+++.+++++++ .+.+..|+||+
T Consensus 94 --~~-~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 94 --DD-KVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred --cc-eEEechhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 13 567888765556778999999999976644 57777787774
No 26
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.47 E-value=9.1e-13 Score=108.16 Aligned_cols=108 Identities=29% Similarity=0.377 Sum_probs=85.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
....+..+ .+.++.+|||+|||+|.++..+++..++.++|+++|+++++++.+++++..++ ...+++ ++.+|.
T Consensus 29 r~~~l~~l--~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g----~~~~v~-~~~~d~ 101 (198)
T PRK00377 29 RALALSKL--RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG----VLNNIV-LIKGEA 101 (198)
T ss_pred HHHHHHHc--CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC----CCCCeE-EEEech
Confidence 44445556 78899999999999999999999886666789999999999999999998853 246899 999998
Q ss_pred CCCCcC-CCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYKK-NGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~-~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.+..+. .+.||+|+++.....+...+.+..+.||+
T Consensus 102 ~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~Lkp 137 (198)
T PRK00377 102 PEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKK 137 (198)
T ss_pred hhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCC
Confidence 753222 35699999987666666667677777764
No 27
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.45 E-value=5.3e-13 Score=113.78 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=77.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|+++ +++ ++++|+
T Consensus 18 ~~~ll~~l--~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~------------~~~-~~~~d~ 81 (255)
T PRK14103 18 FYDLLARV--GAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER------------GVD-ARTGDV 81 (255)
T ss_pred HHHHHHhC--CCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc------------CCc-EEEcCh
Confidence 45566666 56788999999999999999999886 456899999999999998653 477 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.... ..++||+|+++.+++++++ .+.+..+.|||
T Consensus 82 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 118 (255)
T PRK14103 82 RDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAP 118 (255)
T ss_pred hhCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCC
Confidence 7543 4467999999999988865 35555666664
No 28
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.44 E-value=1.3e-12 Score=112.39 Aligned_cols=99 Identities=26% Similarity=0.314 Sum_probs=82.6
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.+.++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++.... +..+++ +..+|+......++.|
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~-----g~~~v~-~~~~d~~~l~~~~~~f 147 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA-----GYTNVE-FRLGEIEALPVADNSV 147 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc-----CCCCEE-EEEcchhhCCCCCCce
Confidence 5678999999999999999888887777778999999999999999998774 356899 9999998644445679
Q ss_pred cEEEecCcCcCch---HHHHHHHHhhcC
Q psy425 230 DVIHFGSGVKHIP---IEVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~~~~---~~l~~~lr~lk~ 254 (254)
|+|+++.++++.+ ..+.+.++.|||
T Consensus 148 D~Vi~~~v~~~~~d~~~~l~~~~r~Lkp 175 (272)
T PRK11873 148 DVIISNCVINLSPDKERVFKEAFRVLKP 175 (272)
T ss_pred eEEEEcCcccCCCCHHHHHHHHHHHcCC
Confidence 9999999887665 457777788875
No 29
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.44 E-value=8.4e-13 Score=94.49 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=68.8
Q ss_pred EEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCc
Q psy425 158 LDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSG 237 (254)
Q Consensus 158 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~ 237 (254)
||+|||+|..+..+++. +..+|+++|+++++++.++++... .++. +..+|+.....++++||+|++..+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~-~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVS-FRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEE-EEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCch-heeehHHhCccccccccccccccc
Confidence 89999999999999988 334899999999999999998654 3688 999999977667788999999999
Q ss_pred CcCchH---HHHHHHHhhcC
Q psy425 238 VKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 238 ~~~~~~---~l~~~lr~lk~ 254 (254)
++++++ .+.+..|+|||
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~ 89 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKP 89 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEE
T ss_pred eeeccCHHHHHHHHHHHcCc
Confidence 988743 36666677764
No 30
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=1.5e-12 Score=106.85 Aligned_cols=91 Identities=24% Similarity=0.220 Sum_probs=73.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||+|||+|..+..+++.+ . +|+|+|+|+++++.++++.... ...+++ +...|+
T Consensus 19 ~~~l~~~l--~~~~~~~vLDiGcG~G~~a~~La~~g-~--~V~gvD~S~~~i~~a~~~~~~~-----~~~~v~-~~~~d~ 87 (197)
T PRK11207 19 HSEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAANG-F--DVTAWDKNPMSIANLERIKAAE-----NLDNLH-TAVVDL 87 (197)
T ss_pred hHHHHHhc--ccCCCCcEEEECCCCCHHHHHHHHCC-C--EEEEEeCCHHHHHHHHHHHHHc-----CCCcce-EEecCh
Confidence 44556666 55677899999999999999999874 3 6999999999999999988775 345788 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCch
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIP 242 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~ 242 (254)
..... .++||+|+++.++++++
T Consensus 88 ~~~~~-~~~fD~I~~~~~~~~~~ 109 (197)
T PRK11207 88 NNLTF-DGEYDFILSTVVLMFLE 109 (197)
T ss_pred hhCCc-CCCcCEEEEecchhhCC
Confidence 75433 34699999999987765
No 31
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=7.2e-13 Score=96.88 Aligned_cols=81 Identities=28% Similarity=0.453 Sum_probs=63.3
Q ss_pred EEEEcCCCChHHHHHHHHc--CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEe
Q psy425 157 VLDLGFGSGFMSCCMARMV--GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHF 234 (254)
Q Consensus 157 VLDiG~G~G~~t~~la~~~--~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~ 234 (254)
|||+|||+|..+..+++.+ ++..+++|+|+++++++.++++.... ..+++ ++++|+.......++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~~~~-~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GPKVR-FVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TTTSE-EEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CCceE-EEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999987 33358999999999999999998763 23899 999999875555678999999
Q ss_pred c-CcCcCchHH
Q psy425 235 G-SGVKHIPIE 244 (254)
Q Consensus 235 ~-~~~~~~~~~ 244 (254)
. .+++++++.
T Consensus 74 ~~~~~~~~~~~ 84 (101)
T PF13649_consen 74 SGLSLHHLSPE 84 (101)
T ss_dssp -TTGGGGSSHH
T ss_pred cCCccCCCCHH
Confidence 4 558888754
No 32
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.43 E-value=1.8e-12 Score=116.43 Aligned_cols=99 Identities=24% Similarity=0.233 Sum_probs=78.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||||||+|.++..+++..+. +|+|+|+|+++++.|+++... .+++ +...|.
T Consensus 156 ~~~l~~~l--~l~~g~rVLDIGcG~G~~a~~la~~~g~--~V~giDlS~~~l~~A~~~~~~--------l~v~-~~~~D~ 222 (383)
T PRK11705 156 LDLICRKL--QLKPGMRVLDIGCGWGGLARYAAEHYGV--SVVGVTISAEQQKLAQERCAG--------LPVE-IRLQDY 222 (383)
T ss_pred HHHHHHHh--CCCCCCEEEEeCCCccHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc--------CeEE-EEECch
Confidence 55566666 7889999999999999999999987543 899999999999999998743 1488 888887
Q ss_pred CCCCcCCCCccEEEecCcCcCch-----HHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIP-----IEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~-----~~l~~~lr~lk~ 254 (254)
... .++||+|++..+++|++ ..+.+..+.|||
T Consensus 223 ~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lkp 259 (383)
T PRK11705 223 RDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKP 259 (383)
T ss_pred hhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCC
Confidence 653 35699999999998874 235555566664
No 33
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=2.2e-12 Score=109.50 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=77.4
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGP 228 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~ 228 (254)
.+.++.+|||+|||+|..+..+++.. .+.++|+|+|+|+.|++.|++++..++ ...+++ ++++|+..... ..
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~----~~~~v~-~~~~d~~~~~~--~~ 125 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK----APTPVD-VIEGDIRDIAI--EN 125 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeE-EEeCChhhCCC--CC
Confidence 35688999999999999999888854 356799999999999999999998753 334799 99999875432 24
Q ss_pred ccEEEecCcCcCchH-----HHHHHHHhhcC
Q psy425 229 YDVIHFGSGVKHIPI-----EVSKLCRSQKK 254 (254)
Q Consensus 229 fD~I~~~~~~~~~~~-----~l~~~lr~lk~ 254 (254)
+|+|+++.+++++++ .+.+..+.|||
T Consensus 126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lkp 156 (247)
T PRK15451 126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNP 156 (247)
T ss_pred CCEEehhhHHHhCCHHHHHHHHHHHHHhcCC
Confidence 899999999988753 35555566664
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.42 E-value=1.8e-12 Score=111.00 Aligned_cols=103 Identities=22% Similarity=0.224 Sum_probs=80.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||||||+|..+..++...+ ++|+|+|+++.+++.|+++... ..++. +..+|+
T Consensus 41 ~~~~l~~l--~l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~-------~~~i~-~~~~D~ 108 (263)
T PTZ00098 41 TTKILSDI--ELNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD-------KNKIE-FEANDI 108 (263)
T ss_pred HHHHHHhC--CCCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc-------CCceE-EEECCc
Confidence 55667777 788999999999999999999887643 4899999999999999988643 24799 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCchH-----HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI-----EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~-----~l~~~lr~lk~ 254 (254)
.....+.++||+|++..++.|++. .+.+..+.|||
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkP 148 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKP 148 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCC
Confidence 754445567999999888877652 34455566664
No 35
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.41 E-value=2.1e-13 Score=112.47 Aligned_cols=83 Identities=28% Similarity=0.354 Sum_probs=70.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
-+|.+|||+|||.|.++..+|+.+. .|+|+|+++++++.|+....+++ -++. +....+++.....++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g------v~i~-y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG------VNID-YRQATVEDLASAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc------cccc-chhhhHHHHHhcCCCccE
Confidence 3899999999999999999999963 69999999999999999988853 3466 777777654444578999
Q ss_pred EEecCcCcCchHH
Q psy425 232 IHFGSGVKHIPIE 244 (254)
Q Consensus 232 I~~~~~~~~~~~~ 244 (254)
|+|..+++|+|++
T Consensus 128 V~cmEVlEHv~dp 140 (243)
T COG2227 128 VTCMEVLEHVPDP 140 (243)
T ss_pred EEEhhHHHccCCH
Confidence 9999999999875
No 36
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.41 E-value=1e-12 Score=112.02 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-cCCCCcc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-KKNGPYD 230 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-~~~~~fD 230 (254)
.++.+|||+|||+|.++..+++.. . +|+++|+++++++.|++++...+ ...+++ ++++|+.... ...++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g-~--~v~~vD~s~~~l~~a~~~~~~~g----~~~~v~-~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG-H--QVILCDLSAEMIQRAKQAAEAKG----VSDNMQ-FIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC----CccceE-EEEcCHHHHhhhcCCCCC
Confidence 456899999999999999999874 3 69999999999999999988753 345789 9999987432 2345799
Q ss_pred EEEecCcCcCchH---HHHHHHHhhcC
Q psy425 231 VIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 231 ~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
+|++..+++++++ .+.+..+.|||
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~Lkp 141 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRP 141 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCC
Confidence 9999999977643 35566677764
No 37
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.40 E-value=8.4e-13 Score=115.70 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
.++.+|||||||+|.++..+++.+ .+|+|||+++++++.|+++....+ ...+++ ++++|+++.....++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~----~~~~i~-~~~~dae~l~~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDP----VTSTIE-YLCTTAEKLADEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcC----ccccee-EEecCHHHhhhccCCCCE
Confidence 357799999999999999998753 379999999999999998866531 235799 999998754444567999
Q ss_pred EEecCcCcCchHH---HHHHHHhhcC
Q psy425 232 IHFGSGVKHIPIE---VSKLCRSQKK 254 (254)
Q Consensus 232 I~~~~~~~~~~~~---l~~~lr~lk~ 254 (254)
|++..+++|+++. +.+..+.|||
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkP 227 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIP 227 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCC
Confidence 9999999888653 3444455543
No 38
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.1e-12 Score=104.22 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=81.2
Q ss_pred hcchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEE
Q psy425 135 VLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDV 214 (254)
Q Consensus 135 ~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~ 214 (254)
++......++..+ .+.||++|||.|+|||.++..|+...++.|+|+++|+.++.++.|++|+...+ ..++++ +
T Consensus 78 IyPKD~~~I~~~~--gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~----l~d~v~-~ 150 (256)
T COG2519 78 IYPKDAGYIVARL--GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG----LGDRVT-L 150 (256)
T ss_pred ecCCCHHHHHHHc--CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc----cccceE-E
Confidence 3334478888888 99999999999999999999999999999999999999999999999999964 344598 9
Q ss_pred EEcCCCCCCcCCCCccEEEecC
Q psy425 215 VEWDARKPYKKNGPYDVIHFGS 236 (254)
Q Consensus 215 ~~~d~~~~~~~~~~fD~I~~~~ 236 (254)
..+|+.+....+ .||+|+...
T Consensus 151 ~~~Dv~~~~~~~-~vDav~LDm 171 (256)
T COG2519 151 KLGDVREGIDEE-DVDAVFLDL 171 (256)
T ss_pred Eecccccccccc-ccCEEEEcC
Confidence 999999766555 699999864
No 39
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.39 E-value=4.1e-12 Score=108.35 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=78.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+ .+.++.+|||||||+|.++..+++.. +.++|+|+|+++.+++.|+++. .++. +..+|+
T Consensus 20 ~~~ll~~~--~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~-~~~~d~ 85 (258)
T PRK01683 20 ARDLLARV--PLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQ-FVEADI 85 (258)
T ss_pred HHHHHhhC--CCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCe-EEECch
Confidence 55566666 56788999999999999999999886 4568999999999999998763 3578 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.... ...+||+|+++.+++++++ .+.+..+.||+
T Consensus 86 ~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkp 122 (258)
T PRK01683 86 ASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAP 122 (258)
T ss_pred hccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCC
Confidence 7543 3347999999999987755 35555566664
No 40
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=4.4e-12 Score=117.38 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=82.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||||||+|..+..++...+ .+|+|+|+|+++++.|+++... ...+++ |.++|+
T Consensus 255 te~l~~~~--~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~------~~~~v~-~~~~d~ 323 (475)
T PLN02336 255 TKEFVDKL--DLKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIG------RKCSVE-FEVADC 323 (475)
T ss_pred HHHHHHhc--CCCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhc------CCCceE-EEEcCc
Confidence 34455655 467789999999999999999998763 3899999999999999988754 235799 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.....+.++||+|++..++.|+++ .+.+..+.||+
T Consensus 324 ~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkp 361 (475)
T PLN02336 324 TKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKP 361 (475)
T ss_pred ccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCC
Confidence 865444567999999999988764 35566677664
No 41
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.37 E-value=6.7e-12 Score=102.80 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=75.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||+|||+|..+..+++.+ .+|+|+|+++.+++.++++...++ . ++. +...|+
T Consensus 19 ~~~l~~~~--~~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~-----~-~v~-~~~~d~ 86 (195)
T TIGR00477 19 HSAVREAV--KTVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKAREN-----L-PLR-TDAYDI 86 (195)
T ss_pred hHHHHHHh--ccCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhC-----C-Cce-eEeccc
Confidence 45566666 55567899999999999999999864 369999999999999999887642 2 477 888887
Q ss_pred CCCCcCCCCccEEEecCcCcCchH-----HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI-----EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~-----~l~~~lr~lk~ 254 (254)
..... .++||+|+++.++++++. .+.+..+.||+
T Consensus 87 ~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkp 125 (195)
T TIGR00477 87 NAAAL-NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRP 125 (195)
T ss_pred hhccc-cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCC
Confidence 64322 346999999999987743 23344455553
No 42
>PRK08317 hypothetical protein; Provisional
Probab=99.37 E-value=9.6e-12 Score=104.12 Aligned_cols=106 Identities=24% Similarity=0.341 Sum_probs=82.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||+|||+|.++..++...++.++++|+|+++.+++.++++... ...+++ +..+|+
T Consensus 8 ~~~~~~~~--~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~------~~~~~~-~~~~d~ 78 (241)
T PRK08317 8 RARTFELL--AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG------LGPNVE-FVRGDA 78 (241)
T ss_pred HHHHHHHc--CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC------CCCceE-EEeccc
Confidence 45566666 788899999999999999999999876667899999999999999988433 345788 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.......+.||+|++..+++++++ .+.+..+.||+
T Consensus 79 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~ 116 (241)
T PRK08317 79 DGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRP 116 (241)
T ss_pred ccCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcC
Confidence 754444567999999999876644 34555555553
No 43
>PRK06202 hypothetical protein; Provisional
Probab=99.37 E-value=4.1e-12 Score=106.75 Aligned_cols=85 Identities=19% Similarity=0.212 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCC
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMV---GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNG 227 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~ 227 (254)
..++.+|||+|||+|.++..+++.. ++..+|+|+|++++|++.|+++... .+++ +...+.......++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~-~~~~~~~~l~~~~~ 128 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVT-FRQAVSDELVAEGE 128 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCe-EEEEecccccccCC
Confidence 3567899999999999999888754 2345899999999999999887543 2466 66666543323456
Q ss_pred CccEEEecCcCcCchHH
Q psy425 228 PYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~~ 244 (254)
+||+|+++.+++|+++.
T Consensus 129 ~fD~V~~~~~lhh~~d~ 145 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDA 145 (232)
T ss_pred CccEEEECCeeecCChH
Confidence 79999999999999874
No 44
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.37 E-value=1.3e-11 Score=104.24 Aligned_cols=97 Identities=14% Similarity=0.218 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
+.++.+|||+|||+|..+..+++.+. +.++++|+|++++|++.|++++...+ ...+++ ++++|+.....+ .+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~----~~~~v~-~~~~d~~~~~~~--~~ 123 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH----SEIPVE-ILCNDIRHVEIK--NA 123 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC----CCCCeE-EEECChhhCCCC--CC
Confidence 45788999999999999999998753 46789999999999999999987642 235789 999999864332 48
Q ss_pred cEEEecCcCcCchH-----HHHHHHHhhcC
Q psy425 230 DVIHFGSGVKHIPI-----EVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~~~~~-----~l~~~lr~lk~ 254 (254)
|+|+++.+++++++ .+.+..+.||+
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~Lkp 153 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNP 153 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999988853 25555566664
No 45
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.36 E-value=9.8e-12 Score=99.62 Aligned_cols=92 Identities=29% Similarity=0.367 Sum_probs=72.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+... ++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++|+..++ ..+++ +...|.
T Consensus 20 t~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~-----~~~v~-~~~~d~ 90 (170)
T PF05175_consen 20 TRLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNG-----LENVE-VVQSDL 90 (170)
T ss_dssp HHHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTT-----CTTEE-EEESST
T ss_pred HHHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcC-----ccccc-cccccc
Confidence 45666777433 78899999999999999999885 55679999999999999999999974 44499 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHI 241 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~ 241 (254)
..... .++||+|+++..++.-
T Consensus 91 ~~~~~-~~~fD~Iv~NPP~~~~ 111 (170)
T PF05175_consen 91 FEALP-DGKFDLIVSNPPFHAG 111 (170)
T ss_dssp TTTCC-TTCEEEEEE---SBTT
T ss_pred ccccc-ccceeEEEEccchhcc
Confidence 87554 5679999999877433
No 46
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.34 E-value=1.4e-11 Score=106.84 Aligned_cols=106 Identities=23% Similarity=0.251 Sum_probs=78.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+.....++.+|||+|||+|.++..+++... .+|+|+|+++.+++.|++|+..++ ...++. +...+.
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~----~~~~~~-~~~~~~ 218 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQ----VSDRLQ-VKLIYL 218 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcC----CCcceE-EEeccc
Confidence 5556666644466889999999999999988887642 479999999999999999998864 234566 666664
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.. ...++||+|+++.....+...+.+..+.|||
T Consensus 219 ~~--~~~~~fDlVvan~~~~~l~~ll~~~~~~Lkp 251 (288)
T TIGR00406 219 EQ--PIEGKADVIVANILAEVIKELYPQFSRLVKP 251 (288)
T ss_pred cc--ccCCCceEEEEecCHHHHHHHHHHHHHHcCC
Confidence 32 2245799999987666555555566666664
No 47
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.34 E-value=1.4e-11 Score=102.61 Aligned_cols=93 Identities=24% Similarity=0.275 Sum_probs=73.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+.....++.+|||+|||+|.++..++... .+|+|+|+++++++.|++++...+ ...+++ +.++|+
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~----~~~~i~-~~~~d~ 113 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRD----VAGNVE-FEVNDL 113 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcC----CCCceE-EEECCh
Confidence 455666663225678999999999999999998763 279999999999999999987642 224799 999998
Q ss_pred CCCCcCCCCccEEEecCcCcCchH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
.... ++||+|++..++.+++.
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~ 134 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPA 134 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCH
Confidence 7643 56999999998877754
No 48
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.34 E-value=3.2e-12 Score=103.43 Aligned_cols=90 Identities=23% Similarity=0.323 Sum_probs=75.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++... .+.+..+|.|+|||+|..|..|+++. +.+.++|+|.|++|++.|+++ ..+++ |..+|+
T Consensus 19 a~dLla~V--p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r----------lp~~~-f~~aDl 84 (257)
T COG4106 19 ARDLLARV--PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR----------LPDAT-FEEADL 84 (257)
T ss_pred HHHHHhhC--CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh----------CCCCc-eecccH
Confidence 44455555 56678899999999999999999998 678999999999999999776 35788 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchHH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
.. +.+..+.|++++|++++.+|+.
T Consensus 85 ~~-w~p~~~~dllfaNAvlqWlpdH 108 (257)
T COG4106 85 RT-WKPEQPTDLLFANAVLQWLPDH 108 (257)
T ss_pred hh-cCCCCccchhhhhhhhhhcccc
Confidence 86 5555679999999999888874
No 49
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.33 E-value=1.4e-11 Score=108.43 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=74.5
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..++..+ ...++.+|||||||+|+++..++..+.. .|+|+|+++.++..++......+ ...++. ++.+|+.
T Consensus 112 ~~l~~~l--~~l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~----~~~~i~-~~~~d~e 182 (322)
T PRK15068 112 DRVLPHL--SPLKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLG----NDQRAH-LLPLGIE 182 (322)
T ss_pred HHHHHhh--CCCCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcC----CCCCeE-EEeCCHH
Confidence 3344444 3346899999999999999999988533 69999999999876554332211 134799 9999988
Q ss_pred CCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 221 KPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 221 ~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
.... .+.||+|++.++++|+++ .+.+..+.||+
T Consensus 183 ~lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lkp 218 (322)
T PRK15068 183 QLPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVP 218 (322)
T ss_pred HCCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCC
Confidence 6444 567999999999987754 34555566553
No 50
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.33 E-value=2.1e-11 Score=102.69 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=74.2
Q ss_pred cchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEE
Q psy425 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVV 215 (254)
Q Consensus 136 ~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 215 (254)
+......++..+ ++.||++|||.|+|||.+|..|++.+++.|+|+..|+.++.++.|++|++.++ ..++|+ +.
T Consensus 25 YpkD~~~I~~~l--~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g----l~~~v~-~~ 97 (247)
T PF08704_consen 25 YPKDISYILMRL--DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG----LDDNVT-VH 97 (247)
T ss_dssp -HHHHHHHHHHT--T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT----CCTTEE-EE
T ss_pred eCchHHHHHHHc--CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC----CCCCce-eE
Confidence 334577888888 99999999999999999999999999999999999999999999999999975 456899 99
Q ss_pred EcCCC-CCCcC--CCCccEEEecCc
Q psy425 216 EWDAR-KPYKK--NGPYDVIHFGSG 237 (254)
Q Consensus 216 ~~d~~-~~~~~--~~~fD~I~~~~~ 237 (254)
+.|+. +++.. ...+|.|+....
T Consensus 98 ~~Dv~~~g~~~~~~~~~DavfLDlp 122 (247)
T PF08704_consen 98 HRDVCEEGFDEELESDFDAVFLDLP 122 (247)
T ss_dssp ES-GGCG--STT-TTSEEEEEEESS
T ss_pred ecceecccccccccCcccEEEEeCC
Confidence 99996 34421 356999999753
No 51
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.32 E-value=1.2e-11 Score=104.09 Aligned_cols=109 Identities=18% Similarity=0.183 Sum_probs=84.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+. ...++.+|||+|||+|+.++.++...++.++|+++|+++++++.|++++++++ ..++++ ++.+|+
T Consensus 56 ~g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g----l~~~i~-~~~gda 129 (234)
T PLN02781 56 EGLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG----VDHKIN-FIQSDA 129 (234)
T ss_pred HHHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEE-EEEccH
Confidence 344555554 55578899999999999999999887667899999999999999999999875 346799 999999
Q ss_pred CCCCc------CCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYK------KNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~------~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.+... ..++||+|++...-...++.+...++.+|+
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence 75321 135799999987655555555555666654
No 52
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=9e-12 Score=106.91 Aligned_cols=91 Identities=26% Similarity=0.391 Sum_probs=70.6
Q ss_pred hHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc
Q psy425 138 RPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW 217 (254)
Q Consensus 138 ~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~ 217 (254)
+....+++.+.....++.+|||+|||||.+++..++++.. +|+|+|++|.+++.|++|+..|+ ....+. ....
T Consensus 147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~----v~~~~~-~~~~ 219 (300)
T COG2264 147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNG----VELLVQ-AKGF 219 (300)
T ss_pred hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcC----Cchhhh-cccc
Confidence 3477888888777889999999999999999999988654 79999999999999999999975 111133 3333
Q ss_pred CCCCCCcCCCCccEEEecC
Q psy425 218 DARKPYKKNGPYDVIHFGS 236 (254)
Q Consensus 218 d~~~~~~~~~~fD~I~~~~ 236 (254)
+... ....++||+|++|-
T Consensus 220 ~~~~-~~~~~~~DvIVANI 237 (300)
T COG2264 220 LLLE-VPENGPFDVIVANI 237 (300)
T ss_pred cchh-hcccCcccEEEehh
Confidence 3322 23346799999986
No 53
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.31 E-value=1.6e-11 Score=104.26 Aligned_cols=99 Identities=22% Similarity=0.186 Sum_probs=74.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||+|||+|.++..++... .+|+++|+++++++.|+++.. ... ++++|+
T Consensus 31 a~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------~~~-~~~~d~ 94 (251)
T PRK10258 31 ADALLAML--PQRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------ADH-YLAGDI 94 (251)
T ss_pred HHHHHHhc--CccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCC-EEEcCc
Confidence 44455555 33457899999999999999888753 379999999999999988742 346 888999
Q ss_pred CCCCcCCCCccEEEecCcCcCch---HHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIP---IEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~---~~l~~~lr~lk~ 254 (254)
......+++||+|+++.++++++ ..+.+..+.||+
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~ 132 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRP 132 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCC
Confidence 86544556799999999886543 346666677764
No 54
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.31 E-value=9.5e-12 Score=107.53 Aligned_cols=90 Identities=23% Similarity=0.347 Sum_probs=68.3
Q ss_pred hHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc
Q psy425 138 RPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW 217 (254)
Q Consensus 138 ~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~ 217 (254)
+..+.+++.+.....++.+|||+|||||.+++..++++.. +|+|+|++|.+++.|++|+..|+ ...++. +.
T Consensus 146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~----~~~~~~-v~-- 216 (295)
T PF06325_consen 146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNG----VEDRIE-VS-- 216 (295)
T ss_dssp HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT-----TTCEE-ES--
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcC----CCeeEE-EE--
Confidence 3478888888777889999999999999999998888654 89999999999999999999985 334554 42
Q ss_pred CCCCCCcCCCCccEEEecCcC
Q psy425 218 DARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 218 d~~~~~~~~~~fD~I~~~~~~ 238 (254)
...+ .. ..+||+|++|-..
T Consensus 217 ~~~~-~~-~~~~dlvvANI~~ 235 (295)
T PF06325_consen 217 LSED-LV-EGKFDLVVANILA 235 (295)
T ss_dssp CTSC-TC-CS-EEEEEEES-H
T ss_pred Eecc-cc-cccCCEEEECCCH
Confidence 2212 12 3679999998644
No 55
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.30 E-value=2.1e-11 Score=103.62 Aligned_cols=100 Identities=27% Similarity=0.329 Sum_probs=73.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+.....++.+|||+|||+|.++..+++.+ . .+|+|+|+++.+++.|++|+..++ ...++. +..+|.
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~-~~v~giDis~~~l~~A~~n~~~~~----~~~~~~-~~~~~~ 178 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-A-KKVLAVDIDPQAVEAARENAELNG----VELNVY-LPQGDL 178 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-C-CeEEEEECCHHHHHHHHHHHHHcC----CCceEE-EccCCC
Confidence 555666665456789999999999999998877664 3 269999999999999999998863 123454 444332
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
+||+|+++.....+...+.+..+.||+
T Consensus 179 --------~fD~Vvani~~~~~~~l~~~~~~~Lkp 205 (250)
T PRK00517 179 --------KADVIVANILANPLLELAPDLARLLKP 205 (250)
T ss_pred --------CcCEEEEcCcHHHHHHHHHHHHHhcCC
Confidence 599999987655555545566666664
No 56
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=2.7e-11 Score=105.09 Aligned_cols=90 Identities=23% Similarity=0.197 Sum_probs=70.2
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..++..+ ...++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.+++++..++ . +++ +...|+.
T Consensus 110 ~~~~~~~--~~~~~~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~-----l-~v~-~~~~D~~ 177 (287)
T PRK12335 110 SEVLEAV--QTVKPGKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKEN-----L-NIR-TGLYDIN 177 (287)
T ss_pred HHHHHHh--hccCCCCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcC-----C-ceE-EEEechh
Confidence 3344444 23345699999999999999999874 379999999999999999988752 3 788 8888987
Q ss_pred CCCcCCCCccEEEecCcCcCchH
Q psy425 221 KPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 221 ~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
.... .++||+|++..++++++.
T Consensus 178 ~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 178 SASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred cccc-cCCccEEEEcchhhhCCH
Confidence 5433 456999999999877653
No 57
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.29 E-value=1.2e-11 Score=99.29 Aligned_cols=88 Identities=17% Similarity=0.312 Sum_probs=70.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--cCCCC
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--KKNGP 228 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--~~~~~ 228 (254)
+.||.+|||+|||.|.+...|.+. ...+.+|+|++++.+..|.++ .+. ++++|+.... .++++
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r------------Gv~-Viq~Dld~gL~~f~d~s 75 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR------------GVS-VIQGDLDEGLADFPDQS 75 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc------------CCC-EEECCHHHhHhhCCCCC
Confidence 578999999999999999888776 345899999999998877665 466 8999998433 45677
Q ss_pred ccEEEecCcCcCchHH---HHHHHHhhc
Q psy425 229 YDVIHFGSGVKHIPIE---VSKLCRSQK 253 (254)
Q Consensus 229 fD~I~~~~~~~~~~~~---l~~~lr~lk 253 (254)
||.|+++.+++++..+ +.|++|+-|
T Consensus 76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 76 FDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred ccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 9999999999766543 667777655
No 58
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=2.4e-11 Score=100.06 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC-CCCC--cCCCCc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA-RKPY--KKNGPY 229 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~-~~~~--~~~~~f 229 (254)
++.+|||+|||+|..+..+++.. +..+|+|+|+++++++.|++++..+ ...+++ ++++|+ .... ...+.|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~-----~~~~v~-~~~~d~~~~l~~~~~~~~~ 112 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEE-----GLTNLR-LLCGDAVEVLLDMFPDGSL 112 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHc-----CCCCEE-EEecCHHHHHHHHcCcccc
Confidence 67899999999999999999885 4568999999999999999998875 346899 999998 4322 234569
Q ss_pred cEEEecCcCcC-----------chHHHHHHHHhhcC
Q psy425 230 DVIHFGSGVKH-----------IPIEVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~~-----------~~~~l~~~lr~lk~ 254 (254)
|+|+++...+. .+..+.+..+.||+
T Consensus 113 D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp 148 (202)
T PRK00121 113 DRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKP 148 (202)
T ss_pred ceEEEECCCCCCCccccccccCCHHHHHHHHHHcCC
Confidence 99998765421 23445555667764
No 59
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.27 E-value=5.4e-11 Score=95.17 Aligned_cols=97 Identities=21% Similarity=0.138 Sum_probs=74.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. ..+++ ++++|+
T Consensus 2 ~~~i~~~~--~~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-------~~~v~-ii~~D~ 68 (169)
T smart00650 2 IDKIVRAA--NLRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-------ADNLT-VIHGDA 68 (169)
T ss_pred HHHHHHhc--CCCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-------CCCEE-EEECch
Confidence 34566767 67788999999999999999999883 3699999999999999998754 34899 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLC 249 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~l 249 (254)
.........||.|+++..++...+.+...+
T Consensus 69 ~~~~~~~~~~d~vi~n~Py~~~~~~i~~~l 98 (169)
T smart00650 69 LKFDLPKLQPYKVVGNLPYNISTPILFKLL 98 (169)
T ss_pred hcCCccccCCCEEEECCCcccHHHHHHHHH
Confidence 865444446999999876653333333333
No 60
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.27 E-value=7.6e-11 Score=96.55 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=78.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+ .+.++.+|||+|||+|.++..+++.. +.++|+++|+++++++.+++|++.+ +..+++ ++.+|+
T Consensus 29 ~~~l~~~l--~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~-----~~~~v~-~~~~d~ 99 (196)
T PRK07402 29 RLLLISQL--RLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRF-----GVKNVE-VIEGSA 99 (196)
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHh-----CCCCeE-EEECch
Confidence 44556666 67789999999999999999998774 4578999999999999999999875 346799 999998
Q ss_pred CCCCcC-CCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYKK-NGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~-~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
...... ...+|.|++... ..++..+.+..+.||+
T Consensus 100 ~~~~~~~~~~~d~v~~~~~-~~~~~~l~~~~~~Lkp 134 (196)
T PRK07402 100 PECLAQLAPAPDRVCIEGG-RPIKEILQAVWQYLKP 134 (196)
T ss_pred HHHHhhCCCCCCEEEEECC-cCHHHHHHHHHHhcCC
Confidence 642211 223688777543 3345556666666664
No 61
>PRK04266 fibrillarin; Provisional
Probab=99.27 E-value=8e-11 Score=98.43 Aligned_cols=96 Identities=24% Similarity=0.217 Sum_probs=72.6
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---cCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---KKN 226 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---~~~ 226 (254)
.+.++.+|||+|||+|.++..+++..+ .++|+|+|++++|++.+.+++.. ..|+. ++.+|+..+. ...
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~-~i~~D~~~~~~~~~l~ 139 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNII-PILADARKPERYAHVV 139 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcE-EEECCCCCcchhhhcc
Confidence 778999999999999999999999975 67899999999999988877665 25798 9999987531 112
Q ss_pred CCccEEEecCcCcCchHH-HHHHHHhhcC
Q psy425 227 GPYDVIHFGSGVKHIPIE-VSKLCRSQKK 254 (254)
Q Consensus 227 ~~fD~I~~~~~~~~~~~~-l~~~lr~lk~ 254 (254)
.+||+|++....++.... +.+..+.||+
T Consensus 140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKp 168 (226)
T PRK04266 140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKD 168 (226)
T ss_pred ccCCEEEECCCChhHHHHHHHHHHHhcCC
Confidence 459999976543221112 4566667765
No 62
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.27 E-value=4.7e-11 Score=104.31 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=72.2
Q ss_pred HHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC
Q psy425 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP 222 (254)
Q Consensus 143 ~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~ 222 (254)
++..+ ...++.+|||||||+|+++..++..+. ..|+|+|.|+.|+..++......+ ...++. +..+++.+.
T Consensus 113 ~l~~l--~~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~----~~~~v~-~~~~~ie~l 183 (314)
T TIGR00452 113 VLPHL--SPLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLD----NDKRAI-LEPLGIEQL 183 (314)
T ss_pred HHHhc--CCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhc----cCCCeE-EEECCHHHC
Confidence 34444 456789999999999999988887743 279999999999877544322211 234677 888888754
Q ss_pred CcCCCCccEEEecCcCcCchHH---HHHHHHhhcC
Q psy425 223 YKKNGPYDVIHFGSGVKHIPIE---VSKLCRSQKK 254 (254)
Q Consensus 223 ~~~~~~fD~I~~~~~~~~~~~~---l~~~lr~lk~ 254 (254)
.. ...||+|++.++++|.+++ +.+..+.||+
T Consensus 184 p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lkp 217 (314)
T TIGR00452 184 HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVI 217 (314)
T ss_pred CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCC
Confidence 33 3469999999999877643 5555566654
No 63
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.27 E-value=8.2e-11 Score=105.05 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=73.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.+.+++.+ ....+.+|||+|||+|.++..+++.. +..+|+++|+|+.+++.|++|++.++.. ...+++ +...|+
T Consensus 217 trllL~~l--p~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~--~~~~v~-~~~~D~ 290 (378)
T PRK15001 217 ARFFMQHL--PENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPE--ALDRCE-FMINNA 290 (378)
T ss_pred HHHHHHhC--CcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcc--cCceEE-EEEccc
Confidence 56667766 33445799999999999999999885 5678999999999999999999876310 123788 999998
Q ss_pred CCCCcCCCCccEEEecCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~ 239 (254)
.... ...+||+|+++..++
T Consensus 291 l~~~-~~~~fDlIlsNPPfh 309 (378)
T PRK15001 291 LSGV-EPFRFNAVLCNPPFH 309 (378)
T ss_pred cccC-CCCCEEEEEECcCcc
Confidence 6543 234699999998875
No 64
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.26 E-value=7.5e-11 Score=107.93 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=73.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+...+ .+.+|.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++|++.+ +..+++ ++++|+
T Consensus 241 s~l~~~~l--~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~-----g~~~v~-~~~~D~ 312 (434)
T PRK14901 241 AQLVAPLL--DPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL-----GLKSIK-ILAADS 312 (434)
T ss_pred HHHHHHHh--CCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc-----CCCeEE-EEeCCh
Confidence 34444555 6788999999999999999999998766679999999999999999999986 456899 999999
Q ss_pred CCCC----cCCCCccEEEecC
Q psy425 220 RKPY----KKNGPYDVIHFGS 236 (254)
Q Consensus 220 ~~~~----~~~~~fD~I~~~~ 236 (254)
.... ...+.||.|++..
T Consensus 313 ~~~~~~~~~~~~~fD~Vl~Da 333 (434)
T PRK14901 313 RNLLELKPQWRGYFDRILLDA 333 (434)
T ss_pred hhcccccccccccCCEEEEeC
Confidence 7543 2235699999864
No 65
>KOG1270|consensus
Probab=99.26 E-value=6.7e-12 Score=104.44 Aligned_cols=90 Identities=23% Similarity=0.377 Sum_probs=68.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCC----CeeEEEEcCCCCCCcCCCCc
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY----KIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~----~v~~~~~~d~~~~~~~~~~f 229 (254)
|.+|||+|||+|.++..||+.+. .|+|||+++++++.|++..... + .... +++ +.+.|++.. .++|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~d-P--~~~~~~~y~l~-~~~~~~E~~---~~~f 159 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMD-P--VLEGAIAYRLE-YEDTDVEGL---TGKF 159 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcC-c--hhccccceeee-hhhcchhhc---cccc
Confidence 47899999999999999999974 5999999999999999984332 1 1122 355 666666542 2349
Q ss_pred cEEEecCcCcCc--hHHHHHHH-Hhhc
Q psy425 230 DVIHFGSGVKHI--PIEVSKLC-RSQK 253 (254)
Q Consensus 230 D~I~~~~~~~~~--~~~l~~~l-r~lk 253 (254)
|+|++..+++|+ |..+.+.+ +.||
T Consensus 160 DaVvcsevleHV~dp~~~l~~l~~~lk 186 (282)
T KOG1270|consen 160 DAVVCSEVLEHVKDPQEFLNCLSALLK 186 (282)
T ss_pred ceeeeHHHHHHHhCHHHHHHHHHHHhC
Confidence 999999999999 66666655 4444
No 66
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.25 E-value=1e-10 Score=98.09 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=75.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+ ...++.+|||+|||+|..+..++..++...+++++|+++.+++.+++++..++ ...++. +..+|+
T Consensus 40 ~~~~~~~~--~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~----~~~~~~-~~~~d~ 112 (239)
T PRK00216 40 RRKTIKWL--GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG----LSGNVE-FVQGDA 112 (239)
T ss_pred HHHHHHHh--CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc----cccCeE-EEeccc
Confidence 34455555 45578899999999999999999987435689999999999999999986532 235688 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
.......+.||+|+++.+++++++
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~ 136 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPD 136 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCC
Confidence 765444567999999888866543
No 67
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.25 E-value=5.2e-11 Score=104.93 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
.++.+|||+|||+|..+..+++..+ ..+|+++|+++++++.|+++... .+++ ++.+|+.......+.||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~-~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECK-IIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCe-EEeccHHhCCCCCCceeE
Confidence 4678999999999999999988763 35899999999999999987542 3688 999999864445567999
Q ss_pred EEecCcCcCchH---HHHHHHHhhcC
Q psy425 232 IHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 232 I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
|+++.+++++++ .+.+..+.||+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkP 207 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKI 207 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCC
Confidence 999999877654 35566676664
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.25 E-value=5.5e-11 Score=96.39 Aligned_cols=92 Identities=24% Similarity=0.163 Sum_probs=68.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.++||+|||.|..+..||+++- .|+++|.|+..++.+++.+++. .-+|+ ....|+
T Consensus 19 hs~v~~a~--~~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~------~l~i~-~~~~Dl 86 (192)
T PF03848_consen 19 HSEVLEAV--PLLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEE------GLDIR-TRVADL 86 (192)
T ss_dssp -HHHHHHC--TTS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHT------T-TEE-EEE-BG
T ss_pred cHHHHHHH--hhcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhc------CceeE-EEEecc
Confidence 44456655 555678999999999999999999964 5999999999999998887764 23488 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchHH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
.....+ +.||+|++..++.+++..
T Consensus 87 ~~~~~~-~~yD~I~st~v~~fL~~~ 110 (192)
T PF03848_consen 87 NDFDFP-EEYDFIVSTVVFMFLQRE 110 (192)
T ss_dssp CCBS-T-TTEEEEEEESSGGGS-GG
T ss_pred hhcccc-CCcCEEEEEEEeccCCHH
Confidence 764443 469999998888777665
No 69
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.24 E-value=1.1e-10 Score=94.18 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
...++.+|||+|||+|.++..+++.. + +|+++|+++++++.+++++..++ .+++ +..+|..... .++|
T Consensus 16 ~~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~------~~~~-~~~~d~~~~~--~~~f 83 (179)
T TIGR00537 16 RELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN------VGLD-VVMTDLFKGV--RGKF 83 (179)
T ss_pred HhcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC------CceE-EEEccccccc--CCcc
Confidence 34567899999999999999999875 3 79999999999999999998742 3688 9999987543 2369
Q ss_pred cEEEecCcCcCch
Q psy425 230 DVIHFGSGVKHIP 242 (254)
Q Consensus 230 D~I~~~~~~~~~~ 242 (254)
|+|+++..+.+.+
T Consensus 84 D~Vi~n~p~~~~~ 96 (179)
T TIGR00537 84 DVILFNPPYLPLE 96 (179)
T ss_pred cEEEECCCCCCCc
Confidence 9999998775443
No 70
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=8.1e-11 Score=102.92 Aligned_cols=98 Identities=21% Similarity=0.199 Sum_probs=72.0
Q ss_pred HHHHHHHhhhc-CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDK-LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
...+++.+... ..++.+|||+|||+|.++..+++.+ . +|+|+|+|+.|++.|+++....+.......+++ |..+|
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g-~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~-f~~~D 205 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEG-A--IVSASDISAAMVAEAERRAKEALAALPPEVLPK-FEAND 205 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCC-C--EEEEEECCHHHHHHHHHHHHhcccccccccceE-EEEcc
Confidence 34455555321 2357899999999999999999873 2 799999999999999999875310000124678 88888
Q ss_pred CCCCCcCCCCccEEEecCcCcCchHH
Q psy425 219 ARKPYKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 219 ~~~~~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
+... .++||+|++..++.|+|+.
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p~~ 228 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYPQD 228 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecCHH
Confidence 7542 3569999999999888764
No 71
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.24 E-value=8.5e-11 Score=96.97 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=89.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE-cC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE-WD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~-~d 218 (254)
...++..+. ...+.++|||||++.|+.++++|......++++++|+++++.+.|++|+++.| ..++|+ ++. +|
T Consensus 47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag----~~~~i~-~~~~gd 120 (219)
T COG4122 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG----VDDRIE-LLLGGD 120 (219)
T ss_pred HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC----CcceEE-EEecCc
Confidence 455555554 56688999999999999999999998768899999999999999999999975 345588 888 58
Q ss_pred CCCCCc--CCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 219 ARKPYK--KNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 219 ~~~~~~--~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
..+... ..++||+||+...-..-|+.+...++.|++
T Consensus 121 al~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~ 158 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRP 158 (219)
T ss_pred HHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCC
Confidence 764333 257899999999998899988888887774
No 72
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.24 E-value=2.3e-12 Score=93.71 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=53.3
Q ss_pred EEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--CCCCccEEEec
Q psy425 158 LDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK--KNGPYDVIHFG 235 (254)
Q Consensus 158 LDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~--~~~~fD~I~~~ 235 (254)
||||||+|.++..+.... +..+++|+|+|+.|++.|++++... ...+.. ....+..+... ..++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAEL-----GNDNFE-RLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHC-----T---EE-EEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc-----CCccee-EEEeecCChhhcccccccceehhh
Confidence 799999999999999986 5678999999999999999988874 233444 44444332221 12479999999
Q ss_pred CcCcCchHHHHHHHHhh
Q psy425 236 SGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 236 ~~~~~~~~~l~~~lr~l 252 (254)
.+++++++ ..+.++.+
T Consensus 74 ~vl~~l~~-~~~~l~~~ 89 (99)
T PF08242_consen 74 NVLHHLED-IEAVLRNI 89 (99)
T ss_dssp -TTS--S--HHHHHHHH
T ss_pred hhHhhhhh-HHHHHHHH
Confidence 99999954 44444443
No 73
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.23 E-value=5e-11 Score=95.94 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.-..-.++||+|||.|.+|..||.++. +++++|+++.+++.|++++.. .++|+ +.++|+...++ .++|
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~-~~~~dvp~~~P-~~~F 107 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVE-WIQADVPEFWP-EGRF 107 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEE-EEES-TTT----SS-E
T ss_pred CccccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeE-EEECcCCCCCC-CCCe
Confidence 444567999999999999999999974 599999999999999999876 46899 99999987554 4569
Q ss_pred cEEEecCcCcCchH--HHHHHHH
Q psy425 230 DVIHFGSGVKHIPI--EVSKLCR 250 (254)
Q Consensus 230 D~I~~~~~~~~~~~--~l~~~lr 250 (254)
|+|+++.++..+.+ .+...++
T Consensus 108 DLIV~SEVlYYL~~~~~L~~~l~ 130 (201)
T PF05401_consen 108 DLIVLSEVLYYLDDAEDLRAALD 130 (201)
T ss_dssp EEEEEES-GGGSSSHHHHHHHHH
T ss_pred eEEEEehHhHcCCCHHHHHHHHH
Confidence 99999999988853 3444443
No 74
>PLN02476 O-methyltransferase
Probab=99.23 E-value=6.4e-11 Score=101.34 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=86.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+. ...+..+|||||+|+|+.+++++...++.++|+++|.+++.++.|++++++.| ..++|+ ++.+|+
T Consensus 106 ~g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG----l~~~I~-li~GdA 179 (278)
T PLN02476 106 QAQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG----VSHKVN-VKHGLA 179 (278)
T ss_pred HHHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEE-EEEcCH
Confidence 455555554 55578999999999999999999987777899999999999999999999975 446899 999998
Q ss_pred CCCCc------CCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYK------KNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~------~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.+..+ ..++||+||+.+.-...++.+...++.|++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCC
Confidence 64322 135799999998766667766666666654
No 75
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.23 E-value=6.3e-11 Score=98.88 Aligned_cols=93 Identities=19% Similarity=0.138 Sum_probs=72.5
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEe
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHF 234 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~ 234 (254)
++|||||||+|..+..+++.. +..+|+|+|+++++++.+++++...+ ...+++ +..+|+..... .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~g----l~~~i~-~~~~d~~~~~~-~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALG----LQGRIR-IFYRDSAKDPF-PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcC----CCcceE-EEecccccCCC-CCCCCEeeh
Confidence 479999999999999999886 34689999999999999999987753 345788 99999864332 346999999
Q ss_pred cCcCcCchH---HHHHHHHhhcC
Q psy425 235 GSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 235 ~~~~~~~~~---~l~~~lr~lk~ 254 (254)
..+++++++ .+.+..+.|||
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~Lkp 96 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKD 96 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCC
Confidence 998877754 24444455553
No 76
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.23 E-value=4.7e-11 Score=97.64 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=66.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--cCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--KKNG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--~~~~ 227 (254)
.++++.+|||+|||+|.++..+++..+. .++|+|+++++++.++++ +++ ++++|+.... ...+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~--~~~giD~s~~~i~~a~~~------------~~~-~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQV--RGYGIEIDQDGVLACVAR------------GVN-VIQGDLDEGLEAFPDK 74 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccCC--cEEEEeCCHHHHHHHHHc------------CCe-EEEEEhhhcccccCCC
Confidence 3457889999999999999888776433 689999999999887542 467 8888886422 3356
Q ss_pred CccEEEecCcCcCchHH---HHHHHHhhc
Q psy425 228 PYDVIHFGSGVKHIPIE---VSKLCRSQK 253 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~~---l~~~lr~lk 253 (254)
+||+|+++.+++++++. +.+.+|+++
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 79999999999888552 444445443
No 77
>PTZ00146 fibrillarin; Provisional
Probab=99.23 E-value=1.5e-10 Score=99.39 Aligned_cols=97 Identities=26% Similarity=0.173 Sum_probs=71.7
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---cCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---KKN 226 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---~~~ 226 (254)
.+.++.+|||+|||+|.++..++..+++.++|+++|+++++.+...+.+.. ..||. ++.+|+..+. ...
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~-~I~~Da~~p~~y~~~~ 200 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIV-PIIEDARYPQKYRMLV 200 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCE-EEECCccChhhhhccc
Confidence 467899999999999999999999998778999999999876555554433 24888 9999987432 123
Q ss_pred CCccEEEecCcCcCchHHH-HHHHHhhcC
Q psy425 227 GPYDVIHFGSGVKHIPIEV-SKLCRSQKK 254 (254)
Q Consensus 227 ~~fD~I~~~~~~~~~~~~l-~~~lr~lk~ 254 (254)
..||+|++..+.++-...+ .++.+.||+
T Consensus 201 ~~vDvV~~Dva~pdq~~il~~na~r~LKp 229 (293)
T PTZ00146 201 PMVDVIFADVAQPDQARIVALNAQYFLKN 229 (293)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHHHhccC
Confidence 4699999988644333233 345566664
No 78
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.22 E-value=8.8e-11 Score=98.39 Aligned_cols=103 Identities=23% Similarity=0.323 Sum_probs=75.9
Q ss_pred HHHHHHHhhhc-CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDK-LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
...+++.+... ...+.+|||+|||+|.++..+++.+ +..+++++|+++++++.+++++. .++. ++.+|
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~-~~~~d 88 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQ-FICGD 88 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCe-EEecc
Confidence 44455555322 1345799999999999999999886 55679999999999999887643 3788 99999
Q ss_pred CCCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhc
Q psy425 219 ARKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQK 253 (254)
Q Consensus 219 ~~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk 253 (254)
+.......++||+|++..+++++++ .+.+..+.||
T Consensus 89 ~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~ 126 (240)
T TIGR02072 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK 126 (240)
T ss_pred hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC
Confidence 9865545567999999999976643 2444445554
No 79
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.22 E-value=1.3e-10 Score=97.16 Aligned_cols=99 Identities=24% Similarity=0.240 Sum_probs=73.5
Q ss_pred HHHHHHhhh-cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 141 AACLQHLSD-KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 141 ~~~l~~l~~-~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
..+++.+.. ...++.+|||+|||+|.++..+++.. . .|+|+|+++.+++.|++++...+ ...++. +..+|+
T Consensus 50 ~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~-~--~v~~~D~s~~~i~~a~~~~~~~~----~~~~i~-~~~~d~ 121 (230)
T PRK07580 50 DTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG-A--KVVASDISPQMVEEARERAPEAG----LAGNIT-FEVGDL 121 (230)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC-C--EEEEEECCHHHHHHHHHHHHhcC----CccCcE-EEEcCc
Confidence 344555531 14578899999999999999998774 3 59999999999999999987642 225788 999995
Q ss_pred CCCCcCCCCccEEEecCcCcCchHH-HHHHHH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIE-VSKLCR 250 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~-l~~~lr 250 (254)
.. ..++||+|++..+++|++++ +.+.++
T Consensus 122 ~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~ 150 (230)
T PRK07580 122 ES---LLGRFDTVVCLDVLIHYPQEDAARMLA 150 (230)
T ss_pred hh---ccCCcCEEEEcchhhcCCHHHHHHHHH
Confidence 42 24569999999999776643 334433
No 80
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.22 E-value=4.9e-11 Score=89.17 Aligned_cols=79 Identities=29% Similarity=0.288 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--cCCCCccE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--KKNGPYDV 231 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--~~~~~fD~ 231 (254)
|.+|||+|||+|.++..+++.+ ..+++|+|+++..++.+++++..++ ...+++ +.++|+.... ...++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~----~~~~~~-~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG----LDDRVE-VIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT----TTTTEE-EEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc----CCceEE-EEECchhhchhhccCceeEE
Confidence 5789999999999999999886 3589999999999999999998863 346799 9999997432 34567999
Q ss_pred EEecCcCc
Q psy425 232 IHFGSGVK 239 (254)
Q Consensus 232 I~~~~~~~ 239 (254)
|+++..+.
T Consensus 74 Iv~npP~~ 81 (117)
T PF13659_consen 74 IVTNPPYG 81 (117)
T ss_dssp EEE--STT
T ss_pred EEECCCCc
Confidence 99998774
No 81
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.22 E-value=3.4e-11 Score=99.08 Aligned_cols=108 Identities=19% Similarity=0.256 Sum_probs=84.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+. ......+||||||++|+.++++|+..++.++|+.+|.+++..+.|+++++..| ..++|+ ++.+|+
T Consensus 33 ~g~lL~~l~-~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag----~~~~I~-~~~gda 106 (205)
T PF01596_consen 33 TGQLLQMLV-RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG----LDDRIE-VIEGDA 106 (205)
T ss_dssp HHHHHHHHH-HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT----GGGGEE-EEES-H
T ss_pred HHHHHHHHH-HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC----CCCcEE-EEEecc
Confidence 455555554 34467899999999999999999988778899999999999999999999875 446899 999998
Q ss_pred CCCCc------CCCCccEEEecCcCcCchHHHHHHHHhhc
Q psy425 220 RKPYK------KNGPYDVIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 220 ~~~~~------~~~~fD~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
.+... ..++||+||+.+.-...+..+...++.|+
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~ 146 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLR 146 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhcc
Confidence 64221 12479999999987777776666666655
No 82
>PRK06922 hypothetical protein; Provisional
Probab=99.22 E-value=1.2e-10 Score=108.98 Aligned_cols=97 Identities=16% Similarity=0.203 Sum_probs=75.4
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--cCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--KKNG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--~~~~ 227 (254)
...++.+|||+|||+|..+..+++.. +.++|+|+|+++.|++.|+++.... ..++. ++++|+.... .+.+
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~------g~~ie-~I~gDa~dLp~~fede 486 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNE------GRSWN-VIKGDAINLSSSFEKE 486 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhc------CCCeE-EEEcchHhCccccCCC
Confidence 44578999999999999999998875 5679999999999999999887652 24688 8999987532 3456
Q ss_pred CccEEEecCcCcCc----------------hHHHHHHHHhhcC
Q psy425 228 PYDVIHFGSGVKHI----------------PIEVSKLCRSQKK 254 (254)
Q Consensus 228 ~fD~I~~~~~~~~~----------------~~~l~~~lr~lk~ 254 (254)
+||+|+++.+++++ ...+.+..++||+
T Consensus 487 SFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP 529 (677)
T PRK06922 487 SVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP 529 (677)
T ss_pred CEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC
Confidence 79999999877654 2345566677765
No 83
>PLN03075 nicotianamine synthase; Provisional
Probab=99.21 E-value=2.7e-10 Score=98.08 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=64.9
Q ss_pred CCCCEEEEEcCCCChH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh-hCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 152 LPGANVLDLGFGSGFM-SCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI-SYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~-t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.++.+|+|||||.|.+ +..++....+.++++|+|+++++++.|++.+.. .+ ...+++ |..+|+.+.....+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~g----L~~rV~-F~~~Da~~~~~~l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPD----LSKRMF-FHTADVMDVTESLKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccC----ccCCcE-EEECchhhcccccCCc
Confidence 3779999999997744 455555545778999999999999999999854 32 345799 9999998654345679
Q ss_pred cEEEecCcCcCc
Q psy425 230 DVIHFGSGVKHI 241 (254)
Q Consensus 230 D~I~~~~~~~~~ 241 (254)
|+|++. ++.++
T Consensus 197 DlVF~~-ALi~~ 207 (296)
T PLN03075 197 DVVFLA-ALVGM 207 (296)
T ss_pred CEEEEe-ccccc
Confidence 999999 66544
No 84
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=2.5e-10 Score=97.80 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=70.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.+.++.+|||+|||+|..+..++++.+..+.|+++|+++.+++.++++++.+ +..+++ +.+.|+.......+.|
T Consensus 68 ~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~-----g~~~v~-~~~~D~~~~~~~~~~f 141 (264)
T TIGR00446 68 EPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC-----GVLNVA-VTNFDGRVFGAAVPKF 141 (264)
T ss_pred CCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc-----CCCcEE-EecCCHHHhhhhccCC
Confidence 6789999999999999999999998866679999999999999999999986 456899 9999987533334469
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|+|++....
T Consensus 142 D~Vl~D~Pc 150 (264)
T TIGR00446 142 DAILLDAPC 150 (264)
T ss_pred CEEEEcCCC
Confidence 999986543
No 85
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.20 E-value=2.8e-10 Score=103.90 Aligned_cols=83 Identities=28% Similarity=0.298 Sum_probs=69.9
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-cCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-KKNGP 228 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-~~~~~ 228 (254)
.+.+|.+|||+|||+|..|..++...+..++|+++|+++++++.+++++++. +..+++ +.++|+.... ...++
T Consensus 234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~-----g~~~v~-~~~~Da~~l~~~~~~~ 307 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL-----KLSSIE-IKIADAERLTEYVQDT 307 (431)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc-----CCCeEE-EEECchhhhhhhhhcc
Confidence 6788999999999999999999999866789999999999999999999985 456788 9999987532 22456
Q ss_pred ccEEEecCcC
Q psy425 229 YDVIHFGSGV 238 (254)
Q Consensus 229 fD~I~~~~~~ 238 (254)
||.|++...+
T Consensus 308 fD~Vl~DaPC 317 (431)
T PRK14903 308 FDRILVDAPC 317 (431)
T ss_pred CCEEEECCCC
Confidence 9999986544
No 86
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.20 E-value=1.5e-10 Score=99.69 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK--GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
.+.+|||+|||+|.++..+++..+.. ..++|+|+|+++++.|+++. .++. +..+|+...+..+++||
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~-~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVT-FCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCe-EEEeecccCCCcCCcee
Confidence 55789999999999999998876432 36999999999999997652 3688 99999886555566899
Q ss_pred EEEecCcCcCchHHHHHHHHhhcC
Q psy425 231 VIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 231 ~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
+|++..+. ..+.+..|+||+
T Consensus 154 ~I~~~~~~----~~~~e~~rvLkp 173 (272)
T PRK11088 154 AIIRIYAP----CKAEELARVVKP 173 (272)
T ss_pred EEEEecCC----CCHHHHHhhccC
Confidence 99987652 224455566664
No 87
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.19 E-value=1.9e-10 Score=105.61 Aligned_cols=101 Identities=19% Similarity=0.230 Sum_probs=77.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||+|||+|.++..+++.+. +|+|+|+|+++++.|++|+..+ +..+++ +..+|+
T Consensus 286 ~~~vl~~l--~~~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~-----~~~~v~-~~~~d~ 354 (443)
T PRK13168 286 VARALEWL--DPQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRN-----GLDNVT-FYHANL 354 (443)
T ss_pred HHHHHHHh--cCCCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHc-----CCCceE-EEEeCh
Confidence 33444444 456789999999999999999998853 6999999999999999999886 356899 999998
Q ss_pred CCCCc----CCCCccEEEecCcCcCchHHHHHHHHhh
Q psy425 220 RKPYK----KNGPYDVIHFGSGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 220 ~~~~~----~~~~fD~I~~~~~~~~~~~~l~~~lr~l 252 (254)
..... ..++||+|+++.....+++ ..+.+..+
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr~g~~~-~~~~l~~~ 390 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPRAGAAE-VMQALAKL 390 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCCcChHH-HHHHHHhc
Confidence 74321 2346999999877665554 34555444
No 88
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=3.7e-10 Score=103.70 Aligned_cols=89 Identities=24% Similarity=0.213 Sum_probs=72.1
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..+...+ .+.++.+|||+|||+|..+..+++..++.++|+++|+++++++.+++|++.+ +..+++ ++++|+.
T Consensus 240 ~lv~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~-----g~~~v~-~~~~D~~ 311 (444)
T PRK14902 240 MLVAPAL--DPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL-----GLTNIE-TKALDAR 311 (444)
T ss_pred HHHHHHh--CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEE-EEeCCcc
Confidence 3344455 6778999999999999999999998766679999999999999999999886 345799 9999997
Q ss_pred CCCc-CCCCccEEEecCc
Q psy425 221 KPYK-KNGPYDVIHFGSG 237 (254)
Q Consensus 221 ~~~~-~~~~fD~I~~~~~ 237 (254)
.... ..+.||+|+++..
T Consensus 312 ~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 312 KVHEKFAEKFDKILVDAP 329 (444)
T ss_pred cccchhcccCCEEEEcCC
Confidence 5321 1256999998754
No 89
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.19 E-value=3.5e-10 Score=100.20 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=70.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ......+|||+|||+|.++..+++.. +..+|+++|+++.+++.|+++++.++ . ..+ +...|+
T Consensus 185 t~lLl~~l--~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~-----l-~~~-~~~~D~ 254 (342)
T PRK09489 185 SQLLLSTL--TPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANG-----L-EGE-VFASNV 254 (342)
T ss_pred HHHHHHhc--cccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC-----C-CCE-EEEccc
Confidence 45666666 33345689999999999999999885 45689999999999999999998863 2 356 788887
Q ss_pred CCCCcCCCCccEEEecCcCcC
Q psy425 220 RKPYKKNGPYDVIHFGSGVKH 240 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~ 240 (254)
.... .++||+|+++..++.
T Consensus 255 ~~~~--~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 255 FSDI--KGRFDMIISNPPFHD 273 (342)
T ss_pred cccc--CCCccEEEECCCccC
Confidence 6532 456999999988864
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.19 E-value=1.9e-10 Score=103.14 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=71.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+...+.++.+|||+|||+|.++..++... +..+|+|+|+|+++++.|++|++.++ .+++ ++++|+
T Consensus 238 TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------~rV~-fi~gDl 309 (423)
T PRK14966 238 TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------ARVE-FAHGSW 309 (423)
T ss_pred HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------CcEE-EEEcch
Confidence 455566554455677899999999999999998774 45689999999999999999998742 3799 999998
Q ss_pred CCCC-cCCCCccEEEecCcC
Q psy425 220 RKPY-KKNGPYDVIHFGSGV 238 (254)
Q Consensus 220 ~~~~-~~~~~fD~I~~~~~~ 238 (254)
.... +..++||+|+++...
T Consensus 310 ~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 310 FDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred hccccccCCCccEEEECCCC
Confidence 6432 234569999998754
No 91
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.6e-10 Score=88.95 Aligned_cols=77 Identities=26% Similarity=0.327 Sum_probs=65.9
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
..-.|..|+|+|||||.+++..+-++.. +|+|+|+++++++.+++|..+ ...++. |..+|+.+. ..+|
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~------l~g~v~-f~~~dv~~~---~~~~ 109 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEE------LLGDVE-FVVADVSDF---RGKF 109 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHh------hCCceE-EEEcchhhc---CCcc
Confidence 3446889999999999999998877644 899999999999999999988 457899 999999863 3458
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|.+++|..|
T Consensus 110 dtvimNPPF 118 (198)
T COG2263 110 DTVIMNPPF 118 (198)
T ss_pred ceEEECCCC
Confidence 999999877
No 92
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.18 E-value=1.9e-10 Score=100.97 Aligned_cols=91 Identities=14% Similarity=0.061 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCccE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYDV 231 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD~ 231 (254)
++.+|||+|||+|.++..+++.. . +|+|+|+++++++.|+++++.++ ..+++ |+++|+..... ..+.||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~--~V~gvD~s~~av~~A~~n~~~~~-----l~~v~-~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-M--QLTGIEISAEAIACAKQSAAELG-----LTNVQ-FQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-C--EEEEEeCCHHHHHHHHHHHHHcC-----CCceE-EEEcCHHHHHHhcCCCCeE
Confidence 57899999999999999999864 2 79999999999999999998863 46899 99999974322 2346999
Q ss_pred EEecCcCcCchHHHHHHHHhh
Q psy425 232 IHFGSGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 232 I~~~~~~~~~~~~l~~~lr~l 252 (254)
|+++..-..+...+.+.+..+
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~~ 264 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQM 264 (315)
T ss_pred EEECCCCCCccHHHHHHHHHc
Confidence 999976666666666666544
No 93
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.17 E-value=1.8e-10 Score=94.21 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC---CcCCCCc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP---YKKNGPY 229 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~---~~~~~~f 229 (254)
...++||||||+|.++..+++.. +...|+|+|+++++++.|++++... +..|++ ++++|+... ..+.+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~-----~l~ni~-~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKL-----GLKNLH-VLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHh-----CCCCEE-EEccCHHHHHHhhCCCCce
Confidence 55699999999999999999886 5678999999999999999998875 356899 999999642 1334579
Q ss_pred cEEEecCcCcCc-----------hHHHHHHHHhhcC
Q psy425 230 DVIHFGSGVKHI-----------PIEVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~~~-----------~~~l~~~lr~lk~ 254 (254)
|.|+++...+.. +..+.+..+.||+
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkp 124 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKK 124 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCC
Confidence 999998654321 2334555677764
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.16 E-value=3.9e-10 Score=97.61 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=65.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++|+..++ ...+++ ++++|+....+ ..+||+
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~----~~~~i~-~~~~D~~~~~~-~~~fD~ 192 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHG----LEDRVT-LIQSDLFAALP-GRKYDL 192 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEE-EEECchhhccC-CCCccE
Confidence 346799999999999999999886 45689999999999999999998864 235799 99999865443 346999
Q ss_pred EEecCc
Q psy425 232 IHFGSG 237 (254)
Q Consensus 232 I~~~~~ 237 (254)
|+++..
T Consensus 193 Iv~NPP 198 (284)
T TIGR03533 193 IVSNPP 198 (284)
T ss_pred EEECCC
Confidence 999853
No 95
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.16 E-value=5.9e-10 Score=101.86 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=67.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCC-CeeEEEEcC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY-KIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~v~~~~~~d 218 (254)
...+...+ .+.+|.+|||+|||+|..+..+++..+ .++|+++|+++++++.+++|++..+ .. .++ +..+|
T Consensus 227 s~~~~~~L--~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g-----~~~~v~-~~~~d 297 (426)
T TIGR00563 227 AQWVATWL--APQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG-----LTIKAE-TKDGD 297 (426)
T ss_pred HHHHHHHh--CCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC-----CCeEEE-Eeccc
Confidence 44555666 778899999999999999999999875 6799999999999999999999864 22 344 46677
Q ss_pred CCCCCc--CCCCccEEEec
Q psy425 219 ARKPYK--KNGPYDVIHFG 235 (254)
Q Consensus 219 ~~~~~~--~~~~fD~I~~~ 235 (254)
...... ..++||.|++.
T Consensus 298 ~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLD 316 (426)
T ss_pred cccccccccccccCEEEEc
Confidence 653222 34579999975
No 96
>PRK14967 putative methyltransferase; Provisional
Probab=99.16 E-value=4.5e-10 Score=93.85 Aligned_cols=79 Identities=28% Similarity=0.272 Sum_probs=64.6
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++|+..++ .+++ ++.+|+.... ..++|
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~-~~~~d~~~~~-~~~~f 102 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVD-VRRGDWARAV-EFRPF 102 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeE-EEECchhhhc-cCCCe
Confidence 46788999999999999999988763 2479999999999999999988752 2588 9999987643 34569
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|+|+++..+
T Consensus 103 D~Vi~npPy 111 (223)
T PRK14967 103 DVVVSNPPY 111 (223)
T ss_pred eEEEECCCC
Confidence 999998644
No 97
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.15 E-value=5.2e-10 Score=92.80 Aligned_cols=94 Identities=20% Similarity=0.389 Sum_probs=74.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||+|||+|..+..+++.....++++++|+++.+++.++++... ..+++ +..+|+
T Consensus 28 ~~~~~~~~--~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~-~~~~d~ 97 (223)
T TIGR01934 28 RRRAVKLI--GVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIE-FIQADA 97 (223)
T ss_pred HHHHHHHh--ccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCce-EEecch
Confidence 34455555 455789999999999999999998875336899999999999999988652 34788 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
.+.....++||+|+++.+++++++
T Consensus 98 ~~~~~~~~~~D~i~~~~~~~~~~~ 121 (223)
T TIGR01934 98 EALPFEDNSFDAVTIAFGLRNVTD 121 (223)
T ss_pred hcCCCCCCcEEEEEEeeeeCCccc
Confidence 865444567999999988876654
No 98
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.2e-10 Score=98.75 Aligned_cols=74 Identities=28% Similarity=0.406 Sum_probs=62.6
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEec
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFG 235 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~ 235 (254)
+|||+|||||.+++.++... +..+|+|+|+|+++++.|++|+..++ ..++. ++.+|....... +||+|++|
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~-----l~~~~-~~~~dlf~~~~~--~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNG-----LVRVL-VVQSDLFEPLRG--KFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcC-----CccEE-EEeeecccccCC--ceeEEEeC
Confidence 79999999999999999996 55789999999999999999999974 36677 777787654433 79999999
Q ss_pred CcC
Q psy425 236 SGV 238 (254)
Q Consensus 236 ~~~ 238 (254)
...
T Consensus 184 PPY 186 (280)
T COG2890 184 PPY 186 (280)
T ss_pred CCC
Confidence 754
No 99
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.1e-10 Score=95.27 Aligned_cols=89 Identities=21% Similarity=0.244 Sum_probs=74.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.+.+++.+ ....+.+|||+|||.|.+++.+++.. +..+++-+|++..+++.|++|+..|+ ..+.. +...|.
T Consensus 147 S~lLl~~l--~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~-v~~s~~ 217 (300)
T COG2813 147 SRLLLETL--PPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTE-VWASNL 217 (300)
T ss_pred HHHHHHhC--CccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccE-EEEecc
Confidence 66778888 55556699999999999999999996 57799999999999999999999873 44546 788888
Q ss_pred CCCCcCCCCccEEEecCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~ 239 (254)
.+.... +||+|++|..||
T Consensus 218 ~~~v~~--kfd~IisNPPfh 235 (300)
T COG2813 218 YEPVEG--KFDLIISNPPFH 235 (300)
T ss_pred cccccc--cccEEEeCCCcc
Confidence 765544 699999999985
No 100
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=8.6e-10 Score=89.18 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=67.9
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCC--eeEEEEcC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK--IMDVVEWD 218 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~--v~~~~~~d 218 (254)
..+++.+ ...++.+|||+|||+|.++..++.. + .+++++|+++++++.+++++..++ ..+ +. ++++|
T Consensus 13 ~~l~~~~--~~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~-----~~~~~~~-~~~~d 81 (188)
T PRK14968 13 FLLAENA--VDKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNN-----IRNNGVE-VIRSD 81 (188)
T ss_pred HHHHHhh--hccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcC-----CCCcceE-EEecc
Confidence 3445555 3467889999999999999999988 3 379999999999999999988753 223 88 99999
Q ss_pred CCCCCcCCCCccEEEecCcC
Q psy425 219 ARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 219 ~~~~~~~~~~fD~I~~~~~~ 238 (254)
........ .||+|+++..+
T Consensus 82 ~~~~~~~~-~~d~vi~n~p~ 100 (188)
T PRK14968 82 LFEPFRGD-KFDVILFNPPY 100 (188)
T ss_pred cccccccc-CceEEEECCCc
Confidence 87654433 69999988654
No 101
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.14 E-value=1.8e-10 Score=90.53 Aligned_cols=85 Identities=33% Similarity=0.511 Sum_probs=62.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
....+..+.+...++.+|||+|||+|.++..+++.. . +++|+|+++.+++. . ++. ....+.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--~~~g~D~~~~~~~~------~---------~~~-~~~~~~ 69 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG-F--EVTGVDISPQMIEK------R---------NVV-FDNFDA 69 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT-S--EEEEEESSHHHHHH------T---------TSE-EEEEEC
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC-C--EEEEEECCHHHHhh------h---------hhh-hhhhhh
Confidence 444555554336789999999999999999997763 4 79999999999888 2 222 333333
Q ss_pred CCCCcCCCCccEEEecCcCcCchH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
.......++||+|+++.+++|+++
T Consensus 70 ~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 70 QDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp HTHHCHSSSEEEEEEESSGGGSSH
T ss_pred hhhhccccchhhHhhHHHHhhccc
Confidence 333334567999999999999986
No 102
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.14 E-value=2.7e-10 Score=97.55 Aligned_cols=91 Identities=10% Similarity=0.038 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCCh----HHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHHHHh----hC-C------------C--
Q psy425 152 LPGANVLDLGFGSGF----MSCCMARMVGD----KGHVTAVDHIPQLINLFMTKLKI----SY-P------------K-- 204 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~----~t~~la~~~~~----~~~v~gvD~s~~~l~~a~~~~~~----~~-~------------~-- 204 (254)
.++.+|||+|||+|. ++..+++.+.. ..+|+|+|+|+.+++.|++..-. .+ + .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 356799999999996 45556665432 35899999999999999985310 00 0 0
Q ss_pred ---cccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchH
Q psy425 205 ---LYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 205 ---~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~ 243 (254)
.....+|+ |.++|+....+..++||+|++.+++.++++
T Consensus 178 ~v~~~ir~~V~-F~~~dl~~~~~~~~~fD~I~crnvl~yf~~ 218 (264)
T smart00138 178 RVKPELKERVR-FAKHNLLAESPPLGDFDLIFCRNVLIYFDE 218 (264)
T ss_pred EEChHHhCcCE-EeeccCCCCCCccCCCCEEEechhHHhCCH
Confidence 00113688 999999876555667999999999988864
No 103
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.13 E-value=6.9e-10 Score=96.29 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=76.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++++|||||||+|.+|..+++... +|+++|+++.+++.+++++...+ ..++++ ++++|+
T Consensus 25 ~~~Iv~~~--~~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~----~~~~v~-ii~~Da 94 (294)
T PTZ00338 25 LDKIVEKA--AIKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSP----LASKLE-VIEGDA 94 (294)
T ss_pred HHHHHHhc--CCCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcC----CCCcEE-EEECCH
Confidence 67777877 788999999999999999999998753 59999999999999999987642 246899 999999
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLC 249 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~l 249 (254)
..... ..||.|+++....--.+.+.+.+
T Consensus 95 l~~~~--~~~d~VvaNlPY~Istpil~~ll 122 (294)
T PTZ00338 95 LKTEF--PYFDVCVANVPYQISSPLVFKLL 122 (294)
T ss_pred hhhcc--cccCEEEecCCcccCcHHHHHHH
Confidence 75332 35899998876643444444444
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.13 E-value=2.2e-10 Score=95.96 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=71.0
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--CCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK--KNG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~--~~~ 227 (254)
.+....+|||+|||+|.+++.+|++.. ..++++||+.+++.+.|+++++.++ ...+++ +++.|+..... ...
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~----l~~ri~-v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNP----LEERIQ-VIEADIKEFLKALVFA 114 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCc----chhcee-EehhhHHHhhhccccc
Confidence 555689999999999999999999964 3789999999999999999999875 567899 99999984332 234
Q ss_pred CccEEEecCcCc
Q psy425 228 PYDVIHFGSGVK 239 (254)
Q Consensus 228 ~fD~I~~~~~~~ 239 (254)
+||+|+||..+.
T Consensus 115 ~fD~Ii~NPPyf 126 (248)
T COG4123 115 SFDLIICNPPYF 126 (248)
T ss_pred ccCEEEeCCCCC
Confidence 699999998774
No 105
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.13 E-value=3.3e-10 Score=104.89 Aligned_cols=102 Identities=21% Similarity=0.221 Sum_probs=75.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||||||+|.++..+++... +|+|+|+++++++.+++... ...+++ ++++|+
T Consensus 26 ~~~il~~l--~~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~-------~~~~i~-~~~~d~ 92 (475)
T PLN02336 26 RPEILSLL--PPYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESING-------HYKNVK-FMCADV 92 (475)
T ss_pred hhHHHhhc--CccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhc-------cCCceE-EEEecc
Confidence 45566666 455678999999999999999998853 69999999999988765322 245799 999998
Q ss_pred CC--CCcCCCCccEEEecCcCcCchHH-----HHHHHHhhcC
Q psy425 220 RK--PYKKNGPYDVIHFGSGVKHIPIE-----VSKLCRSQKK 254 (254)
Q Consensus 220 ~~--~~~~~~~fD~I~~~~~~~~~~~~-----l~~~lr~lk~ 254 (254)
.. ...+.++||+|+++.+++++++. +.+..+.||+
T Consensus 93 ~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~ 134 (475)
T PLN02336 93 TSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKV 134 (475)
T ss_pred cccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCC
Confidence 63 22334679999999999887652 3444455553
No 106
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.13 E-value=8.6e-10 Score=95.52 Aligned_cols=77 Identities=21% Similarity=0.255 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIH 233 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~ 233 (254)
..+|||+|||+|.++..++... +..+|+|+|+++++++.|++|+..++ ...+++ ++.+|+..... ..+||+|+
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~----~~~~v~-~~~~d~~~~~~-~~~fDlIv 187 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQ----LEHRVE-FIQSNLFEPLA-GQKIDIIV 187 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcC----CCCcEE-EEECchhccCc-CCCccEEE
Confidence 3699999999999999999886 45689999999999999999998853 223599 99999876443 23699999
Q ss_pred ecCc
Q psy425 234 FGSG 237 (254)
Q Consensus 234 ~~~~ 237 (254)
++..
T Consensus 188 sNPP 191 (284)
T TIGR00536 188 SNPP 191 (284)
T ss_pred ECCC
Confidence 9853
No 107
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.12 E-value=7.8e-10 Score=98.62 Aligned_cols=106 Identities=15% Similarity=0.174 Sum_probs=80.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ....+..+||||||+|.++..+|+.. +...++|+|+++.+++.|.+++..+ +..|+. ++++|+
T Consensus 111 ~~~~~~~~--~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~-----gL~NV~-~i~~DA 181 (390)
T PRK14121 111 IDNFLDFI--SKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELL-----NLKNLL-IINYDA 181 (390)
T ss_pred HHHHHHHh--cCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHc-----CCCcEE-EEECCH
Confidence 34455555 44456799999999999999999996 6678999999999999999998875 467899 999998
Q ss_pred CCC--CcCCCCccEEEecCcCcCc---------hHHHHHHHHhhcC
Q psy425 220 RKP--YKKNGPYDVIHFGSGVKHI---------PIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~--~~~~~~fD~I~~~~~~~~~---------~~~l~~~lr~lk~ 254 (254)
... ..+.+++|.|+++...+.. +..+.+..|.||+
T Consensus 182 ~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkp 227 (390)
T PRK14121 182 RLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKP 227 (390)
T ss_pred HHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCC
Confidence 632 2345679999998755321 3345555577664
No 108
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.12 E-value=8e-10 Score=91.65 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=66.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhC-C------CcccCCCeeEEEEcCCCCCCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISY-P------KLYKLYKIMDVVEWDARKPYK 224 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~------~~~~~~~v~~~~~~d~~~~~~ 224 (254)
.++.+|||+|||.|..+.+||+++- .|+|+|+|+.+++.+.+...... . ......+|+ +.++|+.....
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~D~~~~~~ 108 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE-IFCGDFFALTA 108 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE-EEEccCCCCCc
Confidence 5778999999999999999998854 59999999999998644221100 0 000124688 99999986443
Q ss_pred C-CCCccEEEecCcCcCchHHHH
Q psy425 225 K-NGPYDVIHFGSGVKHIPIEVS 246 (254)
Q Consensus 225 ~-~~~fD~I~~~~~~~~~~~~l~ 246 (254)
. .++||.|+-..++.++|+...
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R 131 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMR 131 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHH
Confidence 2 356999999988888877643
No 109
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.12 E-value=9.6e-10 Score=96.18 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=78.9
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..+++.+ .+.++.+|||||||+|.++..+++.. +..+++++|. +.+++.+++++.+.+ ..++++ ++.+|+.
T Consensus 139 ~~l~~~~--~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~g----l~~rv~-~~~~d~~ 209 (306)
T TIGR02716 139 QLLLEEA--KLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKG----VADRMR-GIAVDIY 209 (306)
T ss_pred HHHHHHc--CCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCC----ccceEE-EEecCcc
Confidence 4445555 56788999999999999999999996 6678999997 799999999988764 346799 9999987
Q ss_pred CCCcCCCCccEEEecCcCcCchHH-----HHHHHHhhcC
Q psy425 221 KPYKKNGPYDVIHFGSGVKHIPIE-----VSKLCRSQKK 254 (254)
Q Consensus 221 ~~~~~~~~fD~I~~~~~~~~~~~~-----l~~~lr~lk~ 254 (254)
....+ .+|+|++..++++.++. +.+..+.|||
T Consensus 210 ~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~p 246 (306)
T TIGR02716 210 KESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRS 246 (306)
T ss_pred CCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCC
Confidence 43222 36999999888876543 3344455553
No 110
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.12 E-value=8.6e-10 Score=90.40 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..++..+. ...++.+|||+|||+|.+++.++.... .+|+++|.++++++.+++|++.++ ..+++ ++++|+.
T Consensus 42 e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~-----~~~v~-~~~~D~~ 112 (199)
T PRK10909 42 ETLFNWLA-PVIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLK-----AGNAR-VVNTNAL 112 (199)
T ss_pred HHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhC-----CCcEE-EEEchHH
Confidence 34455542 234678999999999999986544432 379999999999999999998863 45899 9999987
Q ss_pred CCCc-CCCCccEEEecCcC-cCchHHHHHHHH
Q psy425 221 KPYK-KNGPYDVIHFGSGV-KHIPIEVSKLCR 250 (254)
Q Consensus 221 ~~~~-~~~~fD~I~~~~~~-~~~~~~l~~~lr 250 (254)
.... ...+||+|+++..+ ..+.+.+.+.+.
T Consensus 113 ~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~ 144 (199)
T PRK10909 113 SFLAQPGTPHNVVFVDPPFRKGLLEETINLLE 144 (199)
T ss_pred HHHhhcCCCceEEEECCCCCCChHHHHHHHHH
Confidence 4332 23469999999885 444444555554
No 111
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.11 E-value=1e-09 Score=97.05 Aligned_cols=88 Identities=19% Similarity=0.067 Sum_probs=70.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+ .++++.+|||+|||+|.++..++... . +++|+|+++.|+..|++|++.++ ..++. +.++|+
T Consensus 171 a~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~~-~--~v~g~Di~~~~~~~a~~nl~~~g-----~~~i~-~~~~D~ 239 (329)
T TIGR01177 171 ARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLMG-A--KVIGCDIDWKMVAGARINLEHYG-----IEDFF-VKRGDA 239 (329)
T ss_pred HHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHhC-C--eEEEEcCCHHHHHHHHHHHHHhC-----CCCCe-EEecch
Confidence 44555555 67889999999999999998877653 3 69999999999999999998863 45588 999999
Q ss_pred CCCCcCCCCccEEEecCcC
Q psy425 220 RKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~ 238 (254)
.......+.||+|+++..+
T Consensus 240 ~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 240 TKLPLSSESVDAIATDPPY 258 (329)
T ss_pred hcCCcccCCCCEEEECCCC
Confidence 8644445679999998543
No 112
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.10 E-value=5.9e-10 Score=102.04 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=77.8
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..+.+.+ .+.++.+|||+|||+|.+++.+++... +|+|+|+++++++.|++|+..+ +..+++ ++.+|+.
T Consensus 282 ~~~~~~l--~~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~-----~~~nv~-~~~~d~~ 350 (431)
T TIGR00479 282 DRALEAL--ELQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELN-----GIANVE-FLAGTLE 350 (431)
T ss_pred HHHHHHh--ccCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHh-----CCCceE-EEeCCHH
Confidence 3444444 456778999999999999999998753 6999999999999999999886 457899 9999986
Q ss_pred CCCc----CCCCccEEEecCcCcCchHHHHHHHHhhc
Q psy425 221 KPYK----KNGPYDVIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 221 ~~~~----~~~~fD~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
.... ...+||+|+++..-..+...+.+.+..++
T Consensus 351 ~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l~~l~ 387 (431)
T TIGR00479 351 TVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTIIELK 387 (431)
T ss_pred HHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHHHhcC
Confidence 4221 23469999998765555555656655544
No 113
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.10 E-value=1.1e-09 Score=93.49 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=70.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||||||+|.++..+++.. . +|+++|+++.+++.+++++.. ..+++ ++++|+
T Consensus 18 ~~~iv~~~--~~~~~~~VLEIG~G~G~lt~~L~~~~-~--~v~~vEid~~~~~~l~~~~~~-------~~~v~-ii~~D~ 84 (258)
T PRK14896 18 VDRIVEYA--EDTDGDPVLEIGPGKGALTDELAKRA-K--KVYAIELDPRLAEFLRDDEIA-------AGNVE-IIEGDA 84 (258)
T ss_pred HHHHHHhc--CCCCcCeEEEEeCccCHHHHHHHHhC-C--EEEEEECCHHHHHHHHHHhcc-------CCCEE-EEEecc
Confidence 67777777 77789999999999999999999884 3 699999999999999988754 35899 999999
Q ss_pred CCCCcCCCCccEEEecCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~ 239 (254)
..... ..||.|+++..+.
T Consensus 85 ~~~~~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 85 LKVDL--PEFNKVVSNLPYQ 102 (258)
T ss_pred ccCCc--hhceEEEEcCCcc
Confidence 86332 2489999987764
No 114
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.10 E-value=1e-09 Score=95.94 Aligned_cols=75 Identities=23% Similarity=0.267 Sum_probs=63.3
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEe
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHF 234 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~ 234 (254)
.+|||+|||+|.++..++... +..+|+++|+|+.+++.|++|++.++ ...+++ ++++|+....+ .++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~----l~~~i~-~~~~D~~~~l~-~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHG----LEDRVT-LIESDLFAALP-GRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhC----CCCcEE-EEECchhhhCC-CCCccEEEE
Confidence 689999999999999999885 45689999999999999999998863 235699 99999865443 346999999
Q ss_pred cC
Q psy425 235 GS 236 (254)
Q Consensus 235 ~~ 236 (254)
+.
T Consensus 208 NP 209 (307)
T PRK11805 208 NP 209 (307)
T ss_pred CC
Confidence 85
No 115
>KOG2904|consensus
Probab=99.09 E-value=1e-09 Score=91.87 Aligned_cols=93 Identities=22% Similarity=0.179 Sum_probs=71.8
Q ss_pred HHHHHHHhhhc-CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDK-LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~-~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
+..+++.+.+. ...+..+||+|||||.++..++...+ +++|+++|.|+.++..|.+|++.+. ..+.+. +++.+
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~----l~g~i~-v~~~~ 207 (328)
T KOG2904|consen 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLK----LSGRIE-VIHNI 207 (328)
T ss_pred HHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHh----hcCceE-EEecc
Confidence 66666666322 23566899999999999999998885 7899999999999999999999874 556787 77665
Q ss_pred CC----CCC-cCCCCccEEEecCcC
Q psy425 219 AR----KPY-KKNGPYDVIHFGSGV 238 (254)
Q Consensus 219 ~~----~~~-~~~~~fD~I~~~~~~ 238 (254)
++ ... ...+++|++++|...
T Consensus 208 me~d~~~~~~l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 208 MESDASDEHPLLEGKIDLLVSNPPY 232 (328)
T ss_pred cccccccccccccCceeEEecCCCc
Confidence 54 222 234789999999754
No 116
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.09 E-value=6.3e-10 Score=93.99 Aligned_cols=109 Identities=19% Similarity=0.194 Sum_probs=85.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...++..+. ......+|||||+++|+.++++|...++.++++++|.+++..+.|++++...| ..++|+ ++.+|+
T Consensus 67 ~g~lL~~l~-~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag----~~~~I~-~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLL-KLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG----VAHKID-FREGPA 140 (247)
T ss_pred HHHHHHHHH-HHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC----CCCceE-EEeccH
Confidence 455555554 44467899999999999999999988778899999999999999999999875 457899 999998
Q ss_pred CCCCcC-------CCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPYKK-------NGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~-------~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.+..+. .++||+||+.+.-...++.+...++.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~ 182 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKV 182 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCC
Confidence 743221 25799999998876666666555665553
No 117
>KOG2915|consensus
Probab=99.08 E-value=2.4e-09 Score=89.63 Aligned_cols=96 Identities=21% Similarity=0.229 Sum_probs=82.5
Q ss_pred cchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEE
Q psy425 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVV 215 (254)
Q Consensus 136 ~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 215 (254)
+-...+.++..| ++.||.+|+|-|+|+|.++.++++.+++.|+++.+|+++...+.|++.+++.+ ..+|++ +.
T Consensus 90 Yt~Dia~I~~~L--~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg----i~~~vt-~~ 162 (314)
T KOG2915|consen 90 YTPDIAMILSML--EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG----IGDNVT-VT 162 (314)
T ss_pred ecccHHHHHHHh--cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC----CCcceE-EE
Confidence 334578888888 99999999999999999999999999999999999999999999999999986 567899 99
Q ss_pred EcCCCC-CCcC-CCCccEEEecCcC
Q psy425 216 EWDARK-PYKK-NGPYDVIHFGSGV 238 (254)
Q Consensus 216 ~~d~~~-~~~~-~~~fD~I~~~~~~ 238 (254)
+.|++. ++.. ...+|.|+....-
T Consensus 163 hrDVc~~GF~~ks~~aDaVFLDlPa 187 (314)
T KOG2915|consen 163 HRDVCGSGFLIKSLKADAVFLDLPA 187 (314)
T ss_pred EeecccCCccccccccceEEEcCCC
Confidence 999983 3333 4568999987544
No 118
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.06 E-value=1.8e-09 Score=100.42 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
++.+|||+|||+|.++..++... +..+|+++|+|+.+++.|++|+..++ ..++++ ++.+|+..... .++||+|
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~----l~~~v~-~~~~D~~~~~~-~~~fDlI 210 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYE----VTDRIQ-IIHSNWFENIE-KQKFDFI 210 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcC----Ccccee-eeecchhhhCc-CCCccEE
Confidence 35689999999999999998875 45689999999999999999998753 235798 99999865332 3469999
Q ss_pred EecCcC
Q psy425 233 HFGSGV 238 (254)
Q Consensus 233 ~~~~~~ 238 (254)
+++...
T Consensus 211 vsNPPY 216 (506)
T PRK01544 211 VSNPPY 216 (506)
T ss_pred EECCCC
Confidence 998644
No 119
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.06 E-value=1.5e-09 Score=93.35 Aligned_cols=86 Identities=20% Similarity=0.150 Sum_probs=68.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++.+|||+|||+|.++..+++.+. +|+|+|+++++++.+++++.. .+++ ++++|+
T Consensus 31 ~~~i~~~l--~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~--------~~v~-~i~~D~ 96 (272)
T PRK00274 31 LDKIVDAA--GPQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE--------DNLT-IIEGDA 96 (272)
T ss_pred HHHHHHhc--CCCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc--------CceE-EEEChh
Confidence 66677777 778899999999999999999999853 699999999999999887532 4799 999999
Q ss_pred CCCCcCCCCccEEEecCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~ 239 (254)
.....+.-.+|.|++|..+.
T Consensus 97 ~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 97 LKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred hcCCHHHcCcceEEEeCCcc
Confidence 86433221147888876543
No 120
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.06 E-value=2.5e-09 Score=91.91 Aligned_cols=81 Identities=27% Similarity=0.310 Sum_probs=66.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
...++.+|||+|||+|.++..++... +..+|+|+|+++.+++.|++++... ...++. ++.+|+..... .++|
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~-----~~~~i~-~~~~d~~~~~~-~~~f 176 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHG-----LGARVE-FLQGDWFEPLP-GGRF 176 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhC-----CCCcEE-EEEccccCcCC-CCce
Confidence 44577899999999999999999886 4568999999999999999998721 346899 99999875443 4579
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|+|+++...
T Consensus 177 D~Iv~npPy 185 (275)
T PRK09328 177 DLIVSNPPY 185 (275)
T ss_pred eEEEECCCc
Confidence 999997544
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.05 E-value=1.8e-09 Score=92.37 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=69.1
Q ss_pred HHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 139 PQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 139 ~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
..+.|+..+. ...++.+|||||||+|.++..+++.. +..+++++|+++++++.|++++...+ ..++++ ++.+|
T Consensus 53 y~~~m~~~l~-~~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~----~~~rv~-v~~~D 125 (262)
T PRK04457 53 YTRAMMGFLL-FNPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPE----NGERFE-VIEAD 125 (262)
T ss_pred HHHHHHHHHh-cCCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCC----CCCceE-EEECC
Confidence 3555555442 34457899999999999999999886 56789999999999999999976531 236899 99999
Q ss_pred CCCCCcC-CCCccEEEecC
Q psy425 219 ARKPYKK-NGPYDVIHFGS 236 (254)
Q Consensus 219 ~~~~~~~-~~~fD~I~~~~ 236 (254)
+.+.... .++||+|++..
T Consensus 126 a~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 126 GAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred HHHHHHhCCCCCCEEEEeC
Confidence 8643221 34699999864
No 122
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=2e-09 Score=89.05 Aligned_cols=71 Identities=27% Similarity=0.389 Sum_probs=57.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
++++.+|||+|||+|.++..+++..++.++|+|||+++ + . ...+++ ++++|+....
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~-------~~~~v~-~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D-------PIVGVD-FLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c-------CCCCcE-EEecCCCChHHHHHHHH
Confidence 57899999999999999999999987667999999998 1 1 234688 9999998642
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
...++||+|+++.+.
T Consensus 112 ~~~~~~~D~V~S~~~~ 127 (209)
T PRK11188 112 RVGDSKVQVVMSDMAP 127 (209)
T ss_pred HhCCCCCCEEecCCCC
Confidence 235679999998765
No 123
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.05 E-value=3.8e-09 Score=89.40 Aligned_cols=78 Identities=27% Similarity=0.333 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
.+.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|++++..+ +..+++ +.++|+.... ..++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~-----~~~~~~-~~~~d~~~~~-~~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARL-----GLDNVT-FLQSDWFEPL-PGGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc-----CCCeEE-EEECchhccC-cCCceeEE
Confidence 45699999999999999999885 4468999999999999999999875 345799 9999997644 34579999
Q ss_pred EecCcC
Q psy425 233 HFGSGV 238 (254)
Q Consensus 233 ~~~~~~ 238 (254)
+++..+
T Consensus 159 i~npPy 164 (251)
T TIGR03534 159 VSNPPY 164 (251)
T ss_pred EECCCC
Confidence 997654
No 124
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.05 E-value=1.6e-09 Score=97.40 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=74.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCcc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYD 230 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD 230 (254)
.++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|++|++.+ +..+++ |..+|+..... ...+||
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~-----~~~~~~-~~~~d~~~~~~~~~~~~D 302 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQML-----GLDNLS-FAALDSAKFATAQMSAPE 302 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHc-----CCCcEE-EEECCHHHHHHhcCCCCC
Confidence 356899999999999999999664 26999999999999999999886 346899 99999864322 123599
Q ss_pred EEEecCcCcCchHHHHHHHHhhc
Q psy425 231 VIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 231 ~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
+|+++..-..+...+.+.+..++
T Consensus 303 ~vi~DPPr~G~~~~~l~~l~~~~ 325 (374)
T TIGR02085 303 LVLVNPPRRGIGKELCDYLSQMA 325 (374)
T ss_pred EEEECCCCCCCcHHHHHHHHhcC
Confidence 99999877766666766665544
No 125
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=2.2e-09 Score=98.60 Aligned_cols=87 Identities=31% Similarity=0.346 Sum_probs=71.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.......+ .+.+|.+|||+|||+|..+..+++..+..++|+++|+++++++.++++++.. +..+++ ++++|+
T Consensus 239 s~l~~~~l--~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-----g~~~v~-~~~~Da 310 (445)
T PRK14904 239 QALACLLL--NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-----GITIIE-TIEGDA 310 (445)
T ss_pred HHHHHHhc--CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----CCCeEE-EEeCcc
Confidence 33444444 6778999999999999999999988765678999999999999999999885 356799 999999
Q ss_pred CCCCcCCCCccEEEec
Q psy425 220 RKPYKKNGPYDVIHFG 235 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~ 235 (254)
.... ..++||+|++.
T Consensus 311 ~~~~-~~~~fD~Vl~D 325 (445)
T PRK14904 311 RSFS-PEEQPDAILLD 325 (445)
T ss_pred cccc-cCCCCCEEEEc
Confidence 7643 34569999975
No 126
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.04 E-value=3.5e-09 Score=92.47 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=64.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCC--
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNG-- 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~-- 227 (254)
.+.++.+|||+|||+|..+..+++.+....+|+++|+|++|++.|++++.... ...++. ++++|+.+......
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~-~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVH-GICADFTQPLALPPEP 134 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEE-EEEEcccchhhhhccc
Confidence 45577899999999999999999886323579999999999999999987631 123577 78999875321111
Q ss_pred ---CccEEEecCcCcCchH
Q psy425 228 ---PYDVIHFGSGVKHIPI 243 (254)
Q Consensus 228 ---~fD~I~~~~~~~~~~~ 243 (254)
...+++++..+.++++
T Consensus 135 ~~~~~~~~~~gs~~~~~~~ 153 (301)
T TIGR03438 135 AAGRRLGFFPGSTIGNFTP 153 (301)
T ss_pred ccCCeEEEEecccccCCCH
Confidence 2345566667776654
No 127
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.03 E-value=1.9e-09 Score=91.63 Aligned_cols=76 Identities=22% Similarity=0.189 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCcc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~fD 230 (254)
++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..+ +++ ++++|+...... .++||
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~--------~~~-~~~~D~~~~l~~~~~~~fD 155 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADA--------GGT-VHEGDLYDALPTALRGRVD 155 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc--------CCE-EEEeechhhcchhcCCCEe
Confidence 34689999999999999999875 3358999999999999999998874 257 899998753321 24699
Q ss_pred EEEecCcC
Q psy425 231 VIHFGSGV 238 (254)
Q Consensus 231 ~I~~~~~~ 238 (254)
+|+++..+
T Consensus 156 lVv~NPPy 163 (251)
T TIGR03704 156 ILAANAPY 163 (251)
T ss_pred EEEECCCC
Confidence 99999754
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=6e-09 Score=95.28 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=70.7
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+...+ .+.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++|+..++ . +++ ++++|+
T Consensus 233 s~~~~~~l--~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g-----~-~~~-~~~~D~ 302 (427)
T PRK10901 233 AQLAATLL--APQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLG-----L-KAT-VIVGDA 302 (427)
T ss_pred HHHHHHHc--CCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcC-----C-CeE-EEEcCc
Confidence 34444555 678899999999999999999999874 3689999999999999999998853 2 478 999999
Q ss_pred CCCC--cCCCCccEEEecCcC
Q psy425 220 RKPY--KKNGPYDVIHFGSGV 238 (254)
Q Consensus 220 ~~~~--~~~~~fD~I~~~~~~ 238 (254)
.... ...++||.|+++..+
T Consensus 303 ~~~~~~~~~~~fD~Vl~D~Pc 323 (427)
T PRK10901 303 RDPAQWWDGQPFDRILLDAPC 323 (427)
T ss_pred ccchhhcccCCCCEEEECCCC
Confidence 7532 234569999976543
No 129
>KOG1541|consensus
Probab=99.01 E-value=2.1e-09 Score=87.44 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=66.0
Q ss_pred hHHHHHHHHhhhcCCC--CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEE
Q psy425 138 RPQAACLQHLSDKLLP--GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVV 215 (254)
Q Consensus 138 ~~~~~~l~~l~~~~~~--~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~ 215 (254)
+.....++.+ .+++ ..-|||||||||..+..+...+. .++|+|+|+.|++.|.+..-+ -. ++
T Consensus 35 em~eRaLELL--alp~~~~~~iLDIGCGsGLSg~vL~~~Gh---~wiGvDiSpsML~~a~~~e~e----------gd-li 98 (270)
T KOG1541|consen 35 EMAERALELL--ALPGPKSGLILDIGCGSGLSGSVLSDSGH---QWIGVDISPSMLEQAVERELE----------GD-LI 98 (270)
T ss_pred HHHHHHHHHh--hCCCCCCcEEEEeccCCCcchheeccCCc---eEEeecCCHHHHHHHHHhhhh----------cC-ee
Confidence 3477778888 5555 67899999999999988876653 599999999999999974222 23 78
Q ss_pred EcCCCCCC-cCCCCccEEEecCcC
Q psy425 216 EWDARKPY-KKNGPYDVIHFGSGV 238 (254)
Q Consensus 216 ~~d~~~~~-~~~~~fD~I~~~~~~ 238 (254)
.+|+-++. +..+.||.+++..++
T Consensus 99 l~DMG~GlpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 99 LCDMGEGLPFRPGTFDGVISISAV 122 (270)
T ss_pred eeecCCCCCCCCCccceEEEeeee
Confidence 88887543 346779999998887
No 130
>KOG3420|consensus
Probab=99.01 E-value=7.6e-10 Score=84.26 Aligned_cols=90 Identities=20% Similarity=0.293 Sum_probs=72.0
Q ss_pred HHHHHHHhhhcC--CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc
Q psy425 140 QAACLQHLSDKL--LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW 217 (254)
Q Consensus 140 ~~~~l~~l~~~~--~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~ 217 (254)
.+-|+..+.+.. -.|+.++|+|||+|.++...+.... -.|+|+|++|++++.+++|+.+. .-++. ++++
T Consensus 33 AasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEf------Evqid-lLqc 103 (185)
T KOG3420|consen 33 AASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEF------EVQID-LLQC 103 (185)
T ss_pred HHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHh------hhhhh-eeee
Confidence 556666653333 3689999999999999966554432 37999999999999999999884 44677 9999
Q ss_pred CCCCCCcCCCCccEEEecCcC
Q psy425 218 DARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 218 d~~~~~~~~~~fD~I~~~~~~ 238 (254)
|+....+..+.||.++++..|
T Consensus 104 dildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 104 DILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred eccchhccCCeEeeEEecCCC
Confidence 999877777889999999887
No 131
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.00 E-value=4.1e-09 Score=89.74 Aligned_cols=93 Identities=20% Similarity=0.230 Sum_probs=71.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ ...++.+|||||||+|.++..+++.+. .|+++|+++.+++.+++++.. ..+++ ++++|+
T Consensus 18 ~~~i~~~~--~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~-------~~~v~-v~~~D~ 84 (253)
T TIGR00755 18 IQKIVEAA--NVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL-------YERLE-VIEGDA 84 (253)
T ss_pred HHHHHHhc--CCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------CCcEE-EEECch
Confidence 67777777 677899999999999999999999864 499999999999999887643 35799 999999
Q ss_pred CCCCcCCCCcc---EEEecCcCcCchHHHHHH
Q psy425 220 RKPYKKNGPYD---VIHFGSGVKHIPIEVSKL 248 (254)
Q Consensus 220 ~~~~~~~~~fD---~I~~~~~~~~~~~~l~~~ 248 (254)
...... .|| +|+++..+ ++..++...
T Consensus 85 ~~~~~~--~~d~~~~vvsNlPy-~i~~~il~~ 113 (253)
T TIGR00755 85 LKVDLP--DFPKQLKVVSNLPY-NISSPLIFK 113 (253)
T ss_pred hcCChh--HcCCcceEEEcCCh-hhHHHHHHH
Confidence 864433 356 77776554 344444433
No 132
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.99 E-value=4e-09 Score=90.29 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCC-eeEEEEcCCCCCCcCCCCcc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK-IMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-v~~~~~~d~~~~~~~~~~fD 230 (254)
-.|.+|||||||+|+++..++..+.. .|+|+|.++..+...+-...-. +... +. ++..-++.... .+.||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~l-----g~~~~~~-~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFL-----GQDPPVF-ELPLGVEDLPN-LGAFD 184 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHh-----CCCccEE-EcCcchhhccc-cCCcC
Confidence 36899999999999999999988654 7999999988765543322221 1222 33 32233333333 56799
Q ss_pred EEEecCcCcCchHHH
Q psy425 231 VIHFGSGVKHIPIEV 245 (254)
Q Consensus 231 ~I~~~~~~~~~~~~l 245 (254)
+|++.+++.|..+++
T Consensus 185 tVF~MGVLYHrr~Pl 199 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPL 199 (315)
T ss_pred EEEEeeehhccCCHH
Confidence 999999998876653
No 133
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.5e-09 Score=96.26 Aligned_cols=103 Identities=22% Similarity=0.193 Sum_probs=84.7
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
+..+++.+ ...++++|||+-||.|.+++.+|+... +|+|+|+++++++.|++|++.| +..|++ |..+++
T Consensus 282 ~~~a~~~~--~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n-----~i~N~~-f~~~~a 350 (432)
T COG2265 282 YETALEWL--ELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAAN-----GIDNVE-FIAGDA 350 (432)
T ss_pred HHHHHHHH--hhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHc-----CCCcEE-EEeCCH
Confidence 55666666 566889999999999999999997764 5999999999999999999997 577899 999999
Q ss_pred CCCCcC---CCCccEEEecCcCcCchHHHHHHHHhhc
Q psy425 220 RKPYKK---NGPYDVIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 220 ~~~~~~---~~~fD~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
+..... ...+|+|++...-..+.+.+.+.+..++
T Consensus 351 e~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~ 387 (432)
T COG2265 351 EEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLK 387 (432)
T ss_pred HHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcC
Confidence 843332 2468999999888888877777776655
No 134
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.97 E-value=5.4e-09 Score=87.02 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=67.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhC-------CCcccCCCeeEEEEcCCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISY-------PKLYKLYKIMDVVEWDARKP 222 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------~~~~~~~~v~~~~~~d~~~~ 222 (254)
.+.++.+|||+|||.|..+.+||+++. .|+|||+|+.+++.+.+...... .......+|+ +.++|+...
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~-~~~~D~~~l 109 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEIT-IYCGDFFAL 109 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceE-EEECcccCC
Confidence 445778999999999999999998753 59999999999998743211100 0001235788 999999864
Q ss_pred CcC-CCCccEEEecCcCcCchHHH
Q psy425 223 YKK-NGPYDVIHFGSGVKHIPIEV 245 (254)
Q Consensus 223 ~~~-~~~fD~I~~~~~~~~~~~~l 245 (254)
... ...||.|+-..++.++|+..
T Consensus 110 ~~~~~~~fd~v~D~~~~~~l~~~~ 133 (218)
T PRK13255 110 TAADLADVDAVYDRAALIALPEEM 133 (218)
T ss_pred CcccCCCeeEEEehHhHhhCCHHH
Confidence 332 34699999999888887653
No 135
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.94 E-value=7.5e-09 Score=86.88 Aligned_cols=84 Identities=30% Similarity=0.331 Sum_probs=66.4
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-cCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-KKNGP 228 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-~~~~~ 228 (254)
...++.+|||||||+|.++..+++.. . +++++|+++.+++.+++++...+ .+++ +...|+.... ...++
T Consensus 45 ~~~~~~~vLdiG~G~G~~~~~l~~~~-~--~v~~iD~s~~~~~~a~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~ 114 (233)
T PRK05134 45 GGLFGKRVLDVGCGGGILSESMARLG-A--DVTGIDASEENIEVARLHALESG------LKID-YRQTTAEELAAEHPGQ 114 (233)
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHcC-C--eEEEEcCCHHHHHHHHHHHHHcC------CceE-EEecCHHHhhhhcCCC
Confidence 34578899999999999999888763 3 69999999999999999887632 2677 8888876432 23457
Q ss_pred ccEEEecCcCcCchH
Q psy425 229 YDVIHFGSGVKHIPI 243 (254)
Q Consensus 229 fD~I~~~~~~~~~~~ 243 (254)
||+|++..+++++++
T Consensus 115 fD~Ii~~~~l~~~~~ 129 (233)
T PRK05134 115 FDVVTCMEMLEHVPD 129 (233)
T ss_pred ccEEEEhhHhhccCC
Confidence 999999988877654
No 136
>KOG3010|consensus
Probab=98.94 E-value=1.8e-09 Score=89.00 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=68.3
Q ss_pred CCCCC-EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 151 LLPGA-NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 151 ~~~~~-~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
..++. .++|+|||+|..++.++.+... |+|+|+|+.|++.|++...... .....+ +...++....-.++++
T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y----~~t~~~-ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTY----CHTPST-MSSDEMVDLLGGEESV 101 (261)
T ss_pred hCCCcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCccc----ccCCcc-ccccccccccCCCcce
Confidence 34544 8999999999988999999754 9999999999998877543210 111122 2222332222235679
Q ss_pred cEEEecCcCc--CchHHHHHHHHhhcC
Q psy425 230 DVIHFGSGVK--HIPIEVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~--~~~~~l~~~lr~lk~ 254 (254)
|+|++..++| +++..+.++.|+|||
T Consensus 102 DlI~~Aqa~HWFdle~fy~~~~rvLRk 128 (261)
T KOG3010|consen 102 DLITAAQAVHWFDLERFYKEAYRVLRK 128 (261)
T ss_pred eeehhhhhHHhhchHHHHHHHHHHcCC
Confidence 9999999997 667778888999986
No 137
>PHA03411 putative methyltransferase; Provisional
Probab=98.93 E-value=9.9e-09 Score=87.34 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
...+.+|||+|||+|.++..++.+.+ ..+|+++|+++.+++.+++++ .+++ ++++|+.... ....||
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~----------~~v~-~v~~D~~e~~-~~~kFD 128 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL----------PEAE-WITSDVFEFE-SNEKFD 128 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC----------cCCE-EEECchhhhc-ccCCCc
Confidence 34567999999999999998887742 248999999999999998863 2688 9999998643 335699
Q ss_pred EEEecCcCcCch
Q psy425 231 VIHFGSGVKHIP 242 (254)
Q Consensus 231 ~I~~~~~~~~~~ 242 (254)
+|+++..+.+.+
T Consensus 129 lIIsNPPF~~l~ 140 (279)
T PHA03411 129 VVISNPPFGKIN 140 (279)
T ss_pred EEEEcCCccccC
Confidence 999999886654
No 138
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.92 E-value=7.3e-09 Score=92.66 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-------- 225 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-------- 225 (254)
+.+|||++||+|.+++.+++... +|+|+|+++.+++.|++|+..+ +..|++ +..+|+......
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~-----~~~~v~-~~~~d~~~~l~~~~~~~~~~ 277 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAAN-----GIDNVQ-IIRMSAEEFTQAMNGVREFN 277 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHh-----CCCcEE-EEECCHHHHHHHHhhccccc
Confidence 35799999999999999998753 6999999999999999999886 356899 999998642210
Q ss_pred --------CCCccEEEecCcCcCchHHHHHHHH
Q psy425 226 --------NGPYDVIHFGSGVKHIPIEVSKLCR 250 (254)
Q Consensus 226 --------~~~fD~I~~~~~~~~~~~~l~~~lr 250 (254)
..+||+|++...-..+.+.+.+.+.
T Consensus 278 ~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~ 310 (362)
T PRK05031 278 RLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQ 310 (362)
T ss_pred ccccccccCCCCCEEEECCCCCCCcHHHHHHHH
Confidence 1258999998876666665655553
No 139
>PRK04148 hypothetical protein; Provisional
Probab=98.92 E-value=1.5e-08 Score=77.33 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=69.2
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCCh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGF-MSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~-~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
...+.+.+ ....+.++||||||+|. ++..|++.+ . .|+++|++++.++.++++ .+. ++.+|
T Consensus 5 ~~~l~~~~--~~~~~~kileIG~GfG~~vA~~L~~~G-~--~ViaIDi~~~aV~~a~~~------------~~~-~v~dD 66 (134)
T PRK04148 5 AEFIAENY--EKGKNKKIVELGIGFYFKVAKKLKESG-F--DVIVIDINEKAVEKAKKL------------GLN-AFVDD 66 (134)
T ss_pred HHHHHHhc--ccccCCEEEEEEecCCHHHHHHHHHCC-C--EEEEEECCHHHHHHHHHh------------CCe-EEECc
Confidence 33444444 33456899999999997 888888664 3 699999999988887665 356 88999
Q ss_pred CCCCCcC-CCCccEEEecCcCcCchHHHHHHHHh
Q psy425 219 ARKPYKK-NGPYDVIHFGSGVKHIPIEVSKLCRS 251 (254)
Q Consensus 219 ~~~~~~~-~~~fD~I~~~~~~~~~~~~l~~~lr~ 251 (254)
+..+... -..+|+|++.-.-+++.+++.+.-+.
T Consensus 67 lf~p~~~~y~~a~liysirpp~el~~~~~~la~~ 100 (134)
T PRK04148 67 LFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKK 100 (134)
T ss_pred CCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHH
Confidence 9865544 34589999988777777777666554
No 140
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.92 E-value=6e-09 Score=86.81 Aligned_cols=95 Identities=25% Similarity=0.279 Sum_probs=70.2
Q ss_pred HHHHHHHhhhc--CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc
Q psy425 140 QAACLQHLSDK--LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW 217 (254)
Q Consensus 140 ~~~~l~~l~~~--~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~ 217 (254)
...+.+.+... ...+.+|||+|||+|.++..+++.. . +++++|+++.+++.+++++...+ ..+++ +...
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~iD~s~~~~~~a~~~~~~~~-----~~~~~-~~~~ 100 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLG-A--NVTGIDASEENIEVAKLHAKKDP-----LLKIE-YRCT 100 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcC-C--eEEEEeCCHHHHHHHHHHHHHcC-----CCceE-EEeC
Confidence 34555555211 2347899999999999999888764 3 59999999999999999987742 23688 8888
Q ss_pred CCCCCCcC-CCCccEEEecCcCcCchH
Q psy425 218 DARKPYKK-NGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 218 d~~~~~~~-~~~fD~I~~~~~~~~~~~ 243 (254)
|+...... .++||+|++..+++++++
T Consensus 101 d~~~~~~~~~~~~D~i~~~~~l~~~~~ 127 (224)
T TIGR01983 101 SVEDLAEKGAKSFDVVTCMEVLEHVPD 127 (224)
T ss_pred CHHHhhcCCCCCccEEEehhHHHhCCC
Confidence 88643322 357999999988876543
No 141
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.90 E-value=7.8e-09 Score=84.07 Aligned_cols=71 Identities=30% Similarity=0.339 Sum_probs=55.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC------
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------ 223 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------ 223 (254)
.++++.+|||+|||+|.++..++....+.++|+++|+++.+ . ..+++ +.++|+.+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~-~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVD-FIRGDFTDEEVLNKIR 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCce-EEEeeCCChhHHHHHH
Confidence 56789999999999999999999887556689999999864 1 13678 8888886432
Q ss_pred --cCCCCccEEEecCc
Q psy425 224 --KKNGPYDVIHFGSG 237 (254)
Q Consensus 224 --~~~~~fD~I~~~~~ 237 (254)
...++||+|+++.+
T Consensus 92 ~~~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAA 107 (188)
T ss_pred HHhCCCCccEEEcCCC
Confidence 23446999999754
No 142
>PRK00811 spermidine synthase; Provisional
Probab=98.89 E-value=1.7e-08 Score=87.36 Aligned_cols=86 Identities=19% Similarity=0.089 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCcc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYD 230 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD 230 (254)
..+.+||+||||+|..+..++++. ...+|+++|+++++++.|++.+...+......++++ ++.+|+..... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~-v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVE-LVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceE-EEECchHHHHhhCCCccc
Confidence 356899999999999999888763 234799999999999999998865321111246899 99999874322 245799
Q ss_pred EEEecCcCc
Q psy425 231 VIHFGSGVK 239 (254)
Q Consensus 231 ~I~~~~~~~ 239 (254)
+|++...-+
T Consensus 153 vIi~D~~dp 161 (283)
T PRK00811 153 VIIVDSTDP 161 (283)
T ss_pred EEEECCCCC
Confidence 999976443
No 143
>PLN02672 methionine S-methyltransferase
Probab=98.88 E-value=1.1e-08 Score=101.44 Aligned_cols=83 Identities=20% Similarity=0.160 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCC-----------cccCCCeeEEEEcCCCCC
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPK-----------LYKLYKIMDVVEWDARKP 222 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-----------~~~~~~v~~~~~~d~~~~ 222 (254)
+.+|||+|||+|.+++.++... +..+|+|+|+|+++++.|++|+..++-+ .....+++ |+++|+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~-f~~sDl~~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVE-FYESDLLGY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEE-EEECchhhh
Confidence 5699999999999999999986 4468999999999999999999875310 00124799 999999865
Q ss_pred CcCC-CCccEEEecCcC
Q psy425 223 YKKN-GPYDVIHFGSGV 238 (254)
Q Consensus 223 ~~~~-~~fD~I~~~~~~ 238 (254)
.... .+||+|++|-..
T Consensus 197 ~~~~~~~fDlIVSNPPY 213 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQ 213 (1082)
T ss_pred ccccCCceEEEEECCCc
Confidence 5332 369999999754
No 144
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.86 E-value=1.8e-08 Score=90.90 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=63.5
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc----CCC
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK----KNG 227 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~----~~~ 227 (254)
.++.+|||+|||+|.+++.++... ..+|+++|+++.+++.|++|+..|+ +...+++ ++++|+..... ...
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ng---l~~~~v~-~i~~D~~~~l~~~~~~~~ 292 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNK---LDLSKAE-FVRDDVFKLLRTYRDRGE 292 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcC---CCCCcEE-EEEccHHHHHHHHHhcCC
Confidence 468999999999999988766432 2489999999999999999999874 1124799 99999975321 234
Q ss_pred CccEEEecCcC
Q psy425 228 PYDVIHFGSGV 238 (254)
Q Consensus 228 ~fD~I~~~~~~ 238 (254)
+||+|+++...
T Consensus 293 ~fDlVilDPP~ 303 (396)
T PRK15128 293 KFDVIVMDPPK 303 (396)
T ss_pred CCCEEEECCCC
Confidence 79999999654
No 145
>KOG1271|consensus
Probab=98.86 E-value=1.6e-08 Score=80.00 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=64.9
Q ss_pred CCCC-EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCC-eeEEEEcCCCCCCcCCCCc
Q psy425 152 LPGA-NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK-IMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 152 ~~~~-~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-v~~~~~~d~~~~~~~~~~f 229 (254)
.+.. +|||+|||.|.+...|++.. -.+..+|+|.|+.+++.|+..++.. +.+| |+ |.+.|+..+....++|
T Consensus 65 ~~~A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~-----~~~n~I~-f~q~DI~~~~~~~~qf 137 (227)
T KOG1271|consen 65 SKQADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERD-----GFSNEIR-FQQLDITDPDFLSGQF 137 (227)
T ss_pred cccccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhc-----CCCccee-EEEeeccCCcccccce
Confidence 3444 99999999999999999885 3456999999999999998887775 3555 99 9999999765556678
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|+|+=-+.+
T Consensus 138 dlvlDKGT~ 146 (227)
T KOG1271|consen 138 DLVLDKGTL 146 (227)
T ss_pred eEEeecCce
Confidence 988766655
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=98.86 E-value=1.6e-08 Score=84.28 Aligned_cols=75 Identities=17% Similarity=0.119 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC--CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG--DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
.+.+|||+|||+|.++..+++... +..+|+++|+++.+++.|+++. .++. +.++|+..... .++||
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~----------~~~~-~~~~D~~~~~~-~~~FD 116 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV----------PEAT-WINADALTTEF-DTLFD 116 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc----------cCCE-EEEcchhcccc-cCCcc
Confidence 478999999999999999988642 2358999999999999999874 2477 99999875332 45799
Q ss_pred EEEecCcCc
Q psy425 231 VIHFGSGVK 239 (254)
Q Consensus 231 ~I~~~~~~~ 239 (254)
+|++|..+.
T Consensus 117 lIIsNPPY~ 125 (241)
T PHA03412 117 MAISNPPFG 125 (241)
T ss_pred EEEECCCCC
Confidence 999998774
No 147
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.85 E-value=2.4e-08 Score=87.40 Aligned_cols=83 Identities=17% Similarity=0.102 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCCcccCCCeeEEEEc-CCC---CCC-cCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS-YPKLYKLYKIMDVVEW-DAR---KPY-KKN 226 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~v~~~~~~-d~~---~~~-~~~ 226 (254)
++.++||||||+|.+...++... ...+++|+|+++.+++.|++|++.+ + ...+|+ ++.. |.. ... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~----l~~~I~-~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG----LNGAIR-LRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC----CcCcEE-EEEccchhhhhhcccccC
Confidence 46799999999999888887764 3568999999999999999999986 3 345687 7643 322 211 234
Q ss_pred CCccEEEecCcCcCc
Q psy425 227 GPYDVIHFGSGVKHI 241 (254)
Q Consensus 227 ~~fD~I~~~~~~~~~ 241 (254)
+.||+|++|..+..-
T Consensus 188 ~~fDlivcNPPf~~s 202 (321)
T PRK11727 188 ERFDATLCNPPFHAS 202 (321)
T ss_pred CceEEEEeCCCCcCc
Confidence 579999999888543
No 148
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.85 E-value=9.9e-09 Score=88.77 Aligned_cols=90 Identities=24% Similarity=0.294 Sum_probs=74.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++..++|++||.|..|..+++.+++.++|+|+|.++++++.|++++.. ..+++ ++++|.
T Consensus 8 l~Evl~~L--~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~-~i~~~f 77 (296)
T PRK00050 8 LDEVVDAL--AIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFT-LVHGNF 77 (296)
T ss_pred HHHHHHhh--CCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEE-EEeCCH
Confidence 78888988 678899999999999999999999986678999999999999999988754 24799 999998
Q ss_pred CCCC---cC-CCCccEEEecCcCc
Q psy425 220 RKPY---KK-NGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~---~~-~~~fD~I~~~~~~~ 239 (254)
.... .. ..++|.|++..++.
T Consensus 78 ~~l~~~l~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 78 SNLKEVLAEGLGKVDGILLDLGVS 101 (296)
T ss_pred HHHHHHHHcCCCccCEEEECCCcc
Confidence 7421 11 12699999988763
No 149
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.85 E-value=2.9e-08 Score=70.88 Aligned_cols=77 Identities=27% Similarity=0.324 Sum_probs=61.0
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCccEEEe
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYDVIHF 234 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD~I~~ 234 (254)
+++|+|||+|..+..++.. ...+++++|++++++..+++..... ...+++ +...|+..... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAAL-----LADNVE-VLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcc-----cccceE-EEEcChhhhccccCCceEEEEE
Confidence 4899999999999888872 3458999999999999998644332 346788 99999886443 3456999999
Q ss_pred cCcCcC
Q psy425 235 GSGVKH 240 (254)
Q Consensus 235 ~~~~~~ 240 (254)
+.++.+
T Consensus 73 ~~~~~~ 78 (107)
T cd02440 73 DPPLHH 78 (107)
T ss_pred ccceee
Confidence 998876
No 150
>KOG4300|consensus
Probab=98.84 E-value=2.1e-08 Score=80.88 Aligned_cols=94 Identities=16% Similarity=0.158 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-cCCCCccEE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-KKNGPYDVI 232 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-~~~~~fD~I 232 (254)
...|||+|||||..-...-- .+..+||++|.++.|-+.+.+.+.++ ...+++.|++++.+... .++++||.|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~-----k~~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEK-----KPLQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred ccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhc-----cCcceEEEEeechhcCcccccCCeeeE
Confidence 34689999999987333211 14558999999999999999999885 35566558999998654 357789999
Q ss_pred EecCcCcCc---hHHHHHHHHhhcC
Q psy425 233 HFGSGVKHI---PIEVSKLCRSQKK 254 (254)
Q Consensus 233 ~~~~~~~~~---~~~l~~~lr~lk~ 254 (254)
++..++-.. ...+.+.-|.|||
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRp 174 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRP 174 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCC
Confidence 999888433 3345666666664
No 151
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.3e-08 Score=82.88 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=71.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.+++.|||||+|.|.+|..|++.+. +|+++|+++.++...++.+.. ..|++ ++++|+
T Consensus 19 ~~kIv~~a--~~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~-------~~n~~-vi~~Da 85 (259)
T COG0030 19 IDKIVEAA--NISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP-------YDNLT-VINGDA 85 (259)
T ss_pred HHHHHHhc--CCCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------ccceE-EEeCch
Confidence 67778877 788899999999999999999999975 499999999999999988753 45899 999999
Q ss_pred CCCCcCC-CCccEEEecCcCc
Q psy425 220 RKPYKKN-GPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~~~~-~~fD~I~~~~~~~ 239 (254)
.....+. ..++.|++|....
T Consensus 86 Lk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 86 LKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred hcCcchhhcCCCEEEEcCCCc
Confidence 8544332 1478888887643
No 152
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.83 E-value=4.5e-08 Score=79.04 Aligned_cols=92 Identities=27% Similarity=0.219 Sum_probs=66.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCC--------EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCe
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKG--------HVTAVDHIPQLINLFMTKLKISYPKLYKLYKI 211 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~--------~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v 211 (254)
.+.|+... ..+++..|||-.||+|.+.+..+....... +++|.|+++++++.|++|+...+ ....+
T Consensus 17 A~~ll~la--~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag----~~~~i 90 (179)
T PF01170_consen 17 AAALLNLA--GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG----VEDYI 90 (179)
T ss_dssp HHHHHHHT--T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-----CGGE
T ss_pred HHHHHHHh--CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc----cCCce
Confidence 55555555 678899999999999999999888764422 38899999999999999998864 34468
Q ss_pred eEEEEcCCCCCCcCCCCccEEEecCcC
Q psy425 212 MDVVEWDARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 212 ~~~~~~d~~~~~~~~~~fD~I~~~~~~ 238 (254)
. +...|+.......+.+|+|+++..+
T Consensus 91 ~-~~~~D~~~l~~~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 91 D-FIQWDARELPLPDGSVDAIVTNPPY 116 (179)
T ss_dssp E-EEE--GGGGGGTTSBSCEEEEE--S
T ss_pred E-EEecchhhcccccCCCCEEEECcch
Confidence 8 9999998655455679999999877
No 153
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.83 E-value=3e-08 Score=81.22 Aligned_cols=81 Identities=26% Similarity=0.323 Sum_probs=59.3
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.+.++..|+|+.||.|.+++.+|+.. ...+|+++|++|.+++.+++|+..|+ ...++. ..++|...... ...|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNk----v~~~i~-~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNK----VENRIE-VINGDAREFLP-EGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-----TTTEE-EEES-GGG----TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcC----CCCeEE-EEcCCHHHhcC-cccc
Confidence 46789999999999999999999863 33579999999999999999999985 446788 99999986544 5679
Q ss_pred cEEEecCc
Q psy425 230 DVIHFGSG 237 (254)
Q Consensus 230 D~I~~~~~ 237 (254)
|.|+++..
T Consensus 171 drvim~lp 178 (200)
T PF02475_consen 171 DRVIMNLP 178 (200)
T ss_dssp EEEEE--T
T ss_pred CEEEECCh
Confidence 99999874
No 154
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.82 E-value=2.9e-08 Score=88.49 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=73.0
Q ss_pred HHHHHHHhhhcCC-CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDKLL-PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~-~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
...+++.+...+. .+.+|||+|||+|.+++.+++... +|+|+|+++++++.|++|+..+ +..+++ ++.+|
T Consensus 183 ~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~-----~~~~v~-~~~~d 253 (353)
T TIGR02143 183 NIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAAN-----NIDNVQ-IIRMS 253 (353)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHc-----CCCcEE-EEEcC
Confidence 3444444432222 235799999999999999998863 6999999999999999999886 356899 99999
Q ss_pred CCCCCcC----------------CCCccEEEecCcCcCchHHHHHHH
Q psy425 219 ARKPYKK----------------NGPYDVIHFGSGVKHIPIEVSKLC 249 (254)
Q Consensus 219 ~~~~~~~----------------~~~fD~I~~~~~~~~~~~~l~~~l 249 (254)
+...... ...||+|++...-..+.+.+.+.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l 300 (353)
T TIGR02143 254 AEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLV 300 (353)
T ss_pred HHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHH
Confidence 8642211 113899999876555555555554
No 155
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.80 E-value=5.8e-08 Score=79.08 Aligned_cols=81 Identities=17% Similarity=0.068 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---cC-CC
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---KK-NG 227 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---~~-~~ 227 (254)
-++.+|||++||+|.+++.++.++.. +|+++|.++.+++.+++|++.++ ...+++ ++.+|+.... .. ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~----~~~~~~-~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLK----SGEQAE-VVRNSALRALKFLAKKPT 120 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhC----CcccEE-EEehhHHHHHHHhhccCC
Confidence 36899999999999999999988643 79999999999999999998864 234788 9999995321 11 22
Q ss_pred CccEEEecCcCc
Q psy425 228 PYDVIHFGSGVK 239 (254)
Q Consensus 228 ~fD~I~~~~~~~ 239 (254)
.||+|+....+.
T Consensus 121 ~~dvv~~DPPy~ 132 (189)
T TIGR00095 121 FDNVIYLDPPFF 132 (189)
T ss_pred CceEEEECcCCC
Confidence 478888887663
No 156
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.79 E-value=2.3e-08 Score=96.62 Aligned_cols=81 Identities=16% Similarity=0.106 Sum_probs=64.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPY 229 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~f 229 (254)
..++.+|||+|||+|.+++.++..+.. +|+++|+|+.+++.|++|+..++ +...+++ ++++|+.+... ...+|
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng---~~~~~v~-~i~~D~~~~l~~~~~~f 609 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNG---LSGRQHR-LIQADCLAWLKEAREQF 609 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhC---CCccceE-EEEccHHHHHHHcCCCc
Confidence 346899999999999999999976432 69999999999999999999875 1124799 99999864221 13579
Q ss_pred cEEEecCc
Q psy425 230 DVIHFGSG 237 (254)
Q Consensus 230 D~I~~~~~ 237 (254)
|+|+++..
T Consensus 610 DlIilDPP 617 (702)
T PRK11783 610 DLIFIDPP 617 (702)
T ss_pred CEEEECCC
Confidence 99999854
No 157
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.76 E-value=2.8e-08 Score=88.54 Aligned_cols=101 Identities=21% Similarity=0.237 Sum_probs=67.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
+..+++++ ...++ +|||+.||+|.+++.+|..+. +|+|||+++++++.|++|+..| +..|++ |..+++
T Consensus 186 ~~~~~~~l--~~~~~-~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N-----~i~n~~-f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWL--DLSKG-DVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLN-----GIDNVE-FIRGDA 253 (352)
T ss_dssp HHHHHHHC--TT-TT-EEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHT-----T--SEE-EEE--S
T ss_pred HHHHHHHh--hcCCC-cEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHc-----CCCcce-EEEeec
Confidence 44444544 34444 899999999999999998864 5999999999999999999997 478999 998876
Q ss_pred CCCC----------------cCCCCccEEEecCcCcCchHHHHHHHHhh
Q psy425 220 RKPY----------------KKNGPYDVIHFGSGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 220 ~~~~----------------~~~~~fD~I~~~~~~~~~~~~l~~~lr~l 252 (254)
.+.. .....+|+|++...-..+.+.+.+.++.+
T Consensus 254 ~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~ 302 (352)
T PF05958_consen 254 EDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKL 302 (352)
T ss_dssp HHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHS
T ss_pred cchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcC
Confidence 4211 01124899999877767776666665443
No 158
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.76 E-value=9.2e-08 Score=79.70 Aligned_cols=96 Identities=15% Similarity=0.038 Sum_probs=70.9
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-------CCCcccCCCeeEEEEcCCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS-------YPKLYKLYKIMDVVEWDARKP 222 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~~v~~~~~~d~~~~ 222 (254)
...++.+||..|||.|....+||..+. +|+|+|+|+.+++.+.+..... ........+++ +.++|+.+.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~-~~~gD~f~l 115 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE-IYVADIFNL 115 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE-EEEccCcCC
Confidence 345678999999999999999999864 4999999999999986632100 00001234789 999999864
Q ss_pred Cc---CCCCccEEEecCcCcCchHHHHHHH
Q psy425 223 YK---KNGPYDVIHFGSGVKHIPIEVSKLC 249 (254)
Q Consensus 223 ~~---~~~~fD~I~~~~~~~~~~~~l~~~l 249 (254)
.. ..++||+|+-.+++.++|+.++..+
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y 145 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNY 145 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHH
Confidence 32 1357999999999999988765443
No 159
>PLN02366 spermidine synthase
Probab=98.73 E-value=1.6e-07 Score=81.95 Aligned_cols=85 Identities=18% Similarity=0.083 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--CCCCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK--KNGPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~--~~~~f 229 (254)
....+||+||||.|..+..++++ ....+|+.+|+++++++.|++.+...+. .+..++++ ++.+|+..... +.++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-~~~dpRv~-vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV-GFDDPRVN-LHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc-ccCCCceE-EEEChHHHHHhhccCCCC
Confidence 46789999999999999999877 2335799999999999999998865310 12346899 99999863221 23569
Q ss_pred cEEEecCcCc
Q psy425 230 DVIHFGSGVK 239 (254)
Q Consensus 230 D~I~~~~~~~ 239 (254)
|+|++...-+
T Consensus 167 DvIi~D~~dp 176 (308)
T PLN02366 167 DAIIVDSSDP 176 (308)
T ss_pred CEEEEcCCCC
Confidence 9999986544
No 160
>KOG0820|consensus
Probab=98.72 E-value=1.3e-07 Score=79.37 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=72.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.. .+++++.|||+|.|||.+|..|.+.+. +|+++|+++.|+....++.+... .....+ ++++|.
T Consensus 47 ~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp----~~~kLq-V~~gD~ 116 (315)
T KOG0820|consen 47 IDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTP----KSGKLQ-VLHGDF 116 (315)
T ss_pred HHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCC----ccceee-EEeccc
Confidence 67777777 899999999999999999999999975 59999999999999999987642 346789 999999
Q ss_pred CCCCcCCCCccEEEecCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~ 239 (254)
.... ...||.++++....
T Consensus 117 lK~d--~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 117 LKTD--LPRFDGCVSNLPYQ 134 (315)
T ss_pred ccCC--CcccceeeccCCcc
Confidence 7532 23489998876553
No 161
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.72 E-value=1e-07 Score=74.52 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=87.6
Q ss_pred cccchhhhhhhccccCCCCCccchhhhhcccCCCCchhcchHHHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCC
Q psy425 98 LPFYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD 177 (254)
Q Consensus 98 ~~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~ 177 (254)
..|...+.+..+....+.|+|++. .+.|+... ....|.-|||+|.|+|.+|..+..++-+
T Consensus 13 ~~F~k~wi~~PrtVGaI~PsSs~l------------------A~~M~s~I--~pesglpVlElGPGTGV~TkaIL~~gv~ 72 (194)
T COG3963 13 ISFFKGWIDNPRTVGAILPSSSIL------------------ARKMASVI--DPESGLPVLELGPGTGVITKAILSRGVR 72 (194)
T ss_pred HHHHHHHhcCCceeeeecCCcHHH------------------HHHHHhcc--CcccCCeeEEEcCCccHhHHHHHhcCCC
Confidence 345666667777777788866663 44556655 6677889999999999999998888766
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC-----CcCCCCccEEEecCcCcCchHH
Q psy425 178 KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP-----YKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 178 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~-----~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
...++++|.+++.+....+.. +.+. ++++|+... ......||.|+++..+..+|..
T Consensus 73 ~~~L~~iE~~~dF~~~L~~~~----------p~~~-ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~ 133 (194)
T COG3963 73 PESLTAIEYSPDFVCHLNQLY----------PGVN-IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH 133 (194)
T ss_pred ccceEEEEeCHHHHHHHHHhC----------CCcc-ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHH
Confidence 668999999999998877764 3466 888887632 2344569999999988777753
No 162
>PRK01581 speE spermidine synthase; Validated
Probab=98.70 E-value=1.5e-07 Score=83.14 Aligned_cols=85 Identities=24% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HHhhCCCcccCCCeeEEEEcCCCCCCc-CCC
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK--LKISYPKLYKLYKIMDVVEWDARKPYK-KNG 227 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~ 227 (254)
.....+||+||||.|..+..+.+.. +..+|++||+++++++.|++. +...+...+..++++ ++.+|+..... ..+
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~-vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVN-VHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceE-EEECcHHHHHHhcCC
Confidence 3456799999999999888877653 345899999999999999972 221110112356899 99999985322 245
Q ss_pred CccEEEecCc
Q psy425 228 PYDVIHFGSG 237 (254)
Q Consensus 228 ~fD~I~~~~~ 237 (254)
.||+|++...
T Consensus 226 ~YDVIIvDl~ 235 (374)
T PRK01581 226 LYDVIIIDFP 235 (374)
T ss_pred CccEEEEcCC
Confidence 6999999853
No 163
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.66 E-value=1.5e-07 Score=82.55 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
..+|.+|+|+.||.|.+++.+|....+ +|+++|++|.+++.+++|+..|+ ....++ .+++|..+.......+|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~----v~~~v~-~i~gD~rev~~~~~~aD 258 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNK----VEGRVE-PILGDAREVAPELGVAD 258 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcC----ccceee-EEeccHHHhhhccccCC
Confidence 457999999999999999999999755 59999999999999999999985 334488 99999986555436699
Q ss_pred EEEecCcC
Q psy425 231 VIHFGSGV 238 (254)
Q Consensus 231 ~I~~~~~~ 238 (254)
.|+++..-
T Consensus 259 rIim~~p~ 266 (341)
T COG2520 259 RIIMGLPK 266 (341)
T ss_pred EEEeCCCC
Confidence 99999754
No 164
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.66 E-value=2e-07 Score=83.81 Aligned_cols=92 Identities=26% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
++.+|||++||+|..++.++...+ ..+|+++|+++++++.+++|++.|+ ..+++ +.++|+.........||+|
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~-----~~~~~-v~~~Da~~~l~~~~~fD~V 129 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNG-----LENEK-VFNKDANALLHEERKFDVV 129 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC-----CCceE-EEhhhHHHHHhhcCCCCEE
Confidence 357999999999999999988764 2479999999999999999998873 56788 9999986433213469999
Q ss_pred EecCcCcCchHHHHHH-HHhhc
Q psy425 233 HFGSGVKHIPIEVSKL-CRSQK 253 (254)
Q Consensus 233 ~~~~~~~~~~~~l~~~-lr~lk 253 (254)
++.. + ..+.++.+. ++.++
T Consensus 130 ~lDP-~-Gs~~~~l~~al~~~~ 149 (382)
T PRK04338 130 DIDP-F-GSPAPFLDSAIRSVK 149 (382)
T ss_pred EECC-C-CCcHHHHHHHHHHhc
Confidence 9975 2 555555544 66554
No 165
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.66 E-value=3.3e-07 Score=73.63 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=61.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KK 225 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~ 225 (254)
....+.+|||+|||+|..++.++... ...+|+..|.++ .++.++.|++.|+. ....++. +...|..+.. ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~--~~~~~v~-v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS--LLDGRVS-VRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT----------E-EEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc--ccccccc-CcEEEecCcccccccc
Confidence 35578999999999999999999884 234899999998 99999999988631 1235677 7777764322 22
Q ss_pred CCCccEEEecCcCc--CchHHHHHHHHhh
Q psy425 226 NGPYDVIHFGSGVK--HIPIEVSKLCRSQ 252 (254)
Q Consensus 226 ~~~fD~I~~~~~~~--~~~~~l~~~lr~l 252 (254)
..+||+|+...++. ..-+++.+.++.+
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~l 145 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRL 145 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHH
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHH
Confidence 34799999999983 4444566665443
No 166
>PRK03612 spermidine synthase; Provisional
Probab=98.66 E-value=1.9e-07 Score=87.40 Aligned_cols=87 Identities=25% Similarity=0.172 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HHhhCCCcccCCCeeEEEEcCCCCCCc-CCCC
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK--LKISYPKLYKLYKIMDVVEWDARKPYK-KNGP 228 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~ 228 (254)
+++.+|||||||+|..+..++++ +...+|+++|+++++++.++++ +...+...+..++++ ++.+|+..... ..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~-vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVT-VVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceE-EEEChHHHHHHhCCCC
Confidence 45789999999999999988875 2225899999999999999994 332111112346899 99999875322 2357
Q ss_pred ccEEEecCcCcC
Q psy425 229 YDVIHFGSGVKH 240 (254)
Q Consensus 229 fD~I~~~~~~~~ 240 (254)
||+|+++...+.
T Consensus 374 fDvIi~D~~~~~ 385 (521)
T PRK03612 374 FDVIIVDLPDPS 385 (521)
T ss_pred CCEEEEeCCCCC
Confidence 999999865443
No 167
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.65 E-value=3.7e-08 Score=77.79 Aligned_cols=76 Identities=22% Similarity=0.174 Sum_probs=55.5
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC---CCCccE
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK---NGPYDV 231 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~---~~~fD~ 231 (254)
..|+|+.||.|..++.+|+.+. +|++||+++..++.|+.|++-.| ..++|+ ++++|..+.... ...||+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYG----v~~~I~-~i~gD~~~~~~~~~~~~~~D~ 72 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYG----VADNID-FICGDFFELLKRLKSNKIFDV 72 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-----GGGEE-EEES-HHHHGGGB------SE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcC----CCCcEE-EEeCCHHHHHhhccccccccE
Confidence 3699999999999999999964 59999999999999999999875 467899 999999743222 112899
Q ss_pred EEecCcC
Q psy425 232 IHFGSGV 238 (254)
Q Consensus 232 I~~~~~~ 238 (254)
|+++...
T Consensus 73 vFlSPPW 79 (163)
T PF09445_consen 73 VFLSPPW 79 (163)
T ss_dssp EEE---B
T ss_pred EEECCCC
Confidence 9987644
No 168
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.65 E-value=3.6e-07 Score=78.57 Aligned_cols=83 Identities=22% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCccE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYDV 231 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD~ 231 (254)
.+.+||+||||+|..+..+++.. +..+++++|+++++++.|++++...+ ......+++ ++.+|+..... ..++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~-~~~~~~~v~-i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLA-GSYDDPRVD-LQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhc-ccccCCceE-EEECchHHHHHhCCCCccE
Confidence 45699999999999998887764 33479999999999999999876532 011235788 88888763221 1357999
Q ss_pred EEecCcC
Q psy425 232 IHFGSGV 238 (254)
Q Consensus 232 I~~~~~~ 238 (254)
|++....
T Consensus 149 Ii~D~~~ 155 (270)
T TIGR00417 149 IIVDSTD 155 (270)
T ss_pred EEEeCCC
Confidence 9998753
No 169
>KOG3191|consensus
Probab=98.62 E-value=3.4e-07 Score=72.56 Aligned_cols=77 Identities=23% Similarity=0.326 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIH 233 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~ 233 (254)
...++|||||||..+..|++..++.....++|++|++++..++.+..|+ .++. .++.|+...... ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~-~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHID-VVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------Cccc-eeehhHHhhhcc-CCccEEE
Confidence 6789999999999999999998888889999999999999999888753 4577 889999866555 6799999
Q ss_pred ecCcC
Q psy425 234 FGSGV 238 (254)
Q Consensus 234 ~~~~~ 238 (254)
.+-..
T Consensus 116 fNPPY 120 (209)
T KOG3191|consen 116 FNPPY 120 (209)
T ss_pred ECCCc
Confidence 98755
No 170
>KOG2187|consensus
Probab=98.62 E-value=1.1e-07 Score=86.33 Aligned_cols=103 Identities=18% Similarity=0.186 Sum_probs=79.5
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
+..+-+++ .+..+..++|+.||||.+++.+|+.+.. |+|||++++++..|++|++.| +..|.+ |+++-+
T Consensus 372 ys~i~e~~--~l~~~k~llDv~CGTG~iglala~~~~~---ViGvEi~~~aV~dA~~nA~~N-----gisNa~-Fi~gqa 440 (534)
T KOG2187|consen 372 YSTIGEWA--GLPADKTLLDVCCGTGTIGLALARGVKR---VIGVEISPDAVEDAEKNAQIN-----GISNAT-FIVGQA 440 (534)
T ss_pred HHHHHHHh--CCCCCcEEEEEeecCCceehhhhccccc---eeeeecChhhcchhhhcchhc-----Ccccee-eeecch
Confidence 55566666 7888999999999999999999998865 999999999999999999997 578999 999966
Q ss_pred CCCCcC---C--CCcc-EEEecCcCcCchHHHHHHHHhhc
Q psy425 220 RKPYKK---N--GPYD-VIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 220 ~~~~~~---~--~~fD-~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
++..+. . ..=+ ++++.-.-..+...+.++++..+
T Consensus 441 E~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~ 480 (534)
T KOG2187|consen 441 EDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYK 480 (534)
T ss_pred hhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhcc
Confidence 543221 1 1235 44555554667777888877654
No 171
>KOG1499|consensus
Probab=98.59 E-value=1.6e-07 Score=81.67 Aligned_cols=78 Identities=22% Similarity=0.193 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
++-.++.|||+|||+|.++.+.|+.+.. +|+++|.+ ++.+.|++.+..|+ ..+.|+ +..+.+++...+..++
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S-~ia~~a~~iv~~N~----~~~ii~-vi~gkvEdi~LP~eKV 128 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEAS-SIADFARKIVKDNG----LEDVIT-VIKGKVEDIELPVEKV 128 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcc--eEEEEech-HHHHHHHHHHHhcC----ccceEE-EeecceEEEecCccce
Confidence 4568999999999999999999998755 89999998 55599999998874 334578 9999988544345679
Q ss_pred cEEEec
Q psy425 230 DVIHFG 235 (254)
Q Consensus 230 D~I~~~ 235 (254)
|+|++-
T Consensus 129 DiIvSE 134 (346)
T KOG1499|consen 129 DIIVSE 134 (346)
T ss_pred eEEeeh
Confidence 999874
No 172
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.54 E-value=8.7e-07 Score=75.88 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=72.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+ .+.++..|||||+|.|.+|..|++.+ . +++++|+++.+++..++++.. .++++ ++++|+
T Consensus 19 ~~~Iv~~~--~~~~~~~VlEiGpG~G~lT~~L~~~~-~--~v~~vE~d~~~~~~L~~~~~~-------~~~~~-vi~~D~ 85 (262)
T PF00398_consen 19 ADKIVDAL--DLSEGDTVLEIGPGPGALTRELLKRG-K--RVIAVEIDPDLAKHLKERFAS-------NPNVE-VINGDF 85 (262)
T ss_dssp HHHHHHHH--TCGTTSEEEEESSTTSCCHHHHHHHS-S--EEEEEESSHHHHHHHHHHCTT-------CSSEE-EEES-T
T ss_pred HHHHHHhc--CCCCCCEEEEeCCCCccchhhHhccc-C--cceeecCcHhHHHHHHHHhhh-------cccce-eeecch
Confidence 78888888 77799999999999999999999997 3 699999999999999987653 46899 999999
Q ss_pred CCCCcCC---CCccEEEecCcCcCchHHHHHHH
Q psy425 220 RKPYKKN---GPYDVIHFGSGVKHIPIEVSKLC 249 (254)
Q Consensus 220 ~~~~~~~---~~fD~I~~~~~~~~~~~~l~~~l 249 (254)
....... .....|+++... ++...+...+
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy-~is~~il~~l 117 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPY-NISSPILRKL 117 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETG-TGHHHHHHHH
T ss_pred hccccHHhhcCCceEEEEEecc-cchHHHHHHH
Confidence 8533322 234566666544 5555544433
No 173
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=4.5e-07 Score=74.21 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=61.7
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC---CcCCCCccE
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP---YKKNGPYDV 231 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~---~~~~~~fD~ 231 (254)
..+||||||.|.+...+|... +...++|+|+....+..+.+++... +..|+. ++++|+... ..+.+++|.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~-----~l~Nv~-~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKR-----GLKNVR-FLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHH-----TTSSEE-EEES-CTTHHHHHSTTTSEEE
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhh-----cccceE-EEEccHHHHHhhcccCCchhe
Confidence 389999999999999999996 6679999999999999999998885 578999 999999742 234567999
Q ss_pred EEecCcC
Q psy425 232 IHFGSGV 238 (254)
Q Consensus 232 I~~~~~~ 238 (254)
|+++..=
T Consensus 92 i~i~FPD 98 (195)
T PF02390_consen 92 IYINFPD 98 (195)
T ss_dssp EEEES--
T ss_pred EEEeCCC
Confidence 9998643
No 174
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.53 E-value=3.6e-07 Score=76.06 Aligned_cols=101 Identities=24% Similarity=0.251 Sum_probs=69.7
Q ss_pred HHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh-hCC---C---cccCCCeeEE
Q psy425 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI-SYP---K---LYKLYKIMDV 214 (254)
Q Consensus 142 ~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~---~---~~~~~~v~~~ 214 (254)
..++.+ ...++.+||..|||.|....+||.++. +|+|+|+|+.+++.+.+.... ... . .....+|+ +
T Consensus 28 ~~~~~l--~~~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~-~ 101 (218)
T PF05724_consen 28 EYLDSL--ALKPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRIT-I 101 (218)
T ss_dssp HHHHHH--TTSTSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEE-E
T ss_pred HHHHhc--CCCCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceE-E
Confidence 334444 567888999999999999999998853 699999999999998543221 000 0 01234788 9
Q ss_pred EEcCCCCCCcC-CCCccEEEecCcCcCchHHHHHH
Q psy425 215 VEWDARKPYKK-NGPYDVIHFGSGVKHIPIEVSKL 248 (254)
Q Consensus 215 ~~~d~~~~~~~-~~~fD~I~~~~~~~~~~~~l~~~ 248 (254)
.++|+...... .++||+|+=..++..+|+..++.
T Consensus 102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~ 136 (218)
T PF05724_consen 102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRER 136 (218)
T ss_dssp EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHH
T ss_pred EEcccccCChhhcCCceEEEEecccccCCHHHHHH
Confidence 99999864433 34799999999887777654433
No 175
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.53 E-value=2.8e-07 Score=74.63 Aligned_cols=94 Identities=28% Similarity=0.248 Sum_probs=65.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.+.+...+....-+|.+|||+.||||.+++....++.. +|+.||.++..+...++|++..+ ...+++ ++.+|.
T Consensus 29 realFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~----~~~~~~-v~~~d~ 101 (183)
T PF03602_consen 29 REALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLG----LEDKIR-VIKGDA 101 (183)
T ss_dssp HHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT-----GGGEE-EEESSH
T ss_pred HHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhC----CCccee-eeccCH
Confidence 44455555322147999999999999999998888655 89999999999999999999853 233588 899997
Q ss_pred CCCC----cCCCCccEEEecCcCcC
Q psy425 220 RKPY----KKNGPYDVIHFGSGVKH 240 (254)
Q Consensus 220 ~~~~----~~~~~fD~I~~~~~~~~ 240 (254)
.... ....+||+|++...+..
T Consensus 102 ~~~l~~~~~~~~~fDiIflDPPY~~ 126 (183)
T PF03602_consen 102 FKFLLKLAKKGEKFDIIFLDPPYAK 126 (183)
T ss_dssp HHHHHHHHHCTS-EEEEEE--STTS
T ss_pred HHHHHhhcccCCCceEEEECCCccc
Confidence 5322 13467999999987743
No 176
>KOG1500|consensus
Probab=98.52 E-value=7.6e-07 Score=76.90 Aligned_cols=75 Identities=23% Similarity=0.184 Sum_probs=63.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
.+..|||+|||+|.++...++.+.. +|+++|.| +|.++|++..+.|+ ..++|. ++.|.+++...++ +.|+|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~----~~~rIt-VI~GKiEdieLPE-k~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNN----LADRIT-VIPGKIEDIELPE-KVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCC----ccceEE-EccCccccccCch-hccEE
Confidence 5789999999999999999988765 89999987 89999999988874 678899 9999998654443 48999
Q ss_pred EecC
Q psy425 233 HFGS 236 (254)
Q Consensus 233 ~~~~ 236 (254)
++-.
T Consensus 248 ISEP 251 (517)
T KOG1500|consen 248 ISEP 251 (517)
T ss_pred Eecc
Confidence 8864
No 177
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.51 E-value=1.1e-06 Score=80.86 Aligned_cols=83 Identities=13% Similarity=0.212 Sum_probs=69.8
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-cCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-KKNGP 228 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-~~~~~ 228 (254)
.+.+|.+|||+|||.|.-|..++.+.+..+.++++|+++..++.+++|+++. +..|+. +.+.|..... ...+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~-----G~~nv~-v~~~D~~~~~~~~~~~ 183 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC-----GVSNVA-LTHFDGRVFGAALPET 183 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCCeEE-EEeCchhhhhhhchhh
Confidence 5579999999999999999999999877789999999999999999999995 567898 9999987421 12345
Q ss_pred ccEEEecCcC
Q psy425 229 YDVIHFGSGV 238 (254)
Q Consensus 229 fD~I~~~~~~ 238 (254)
||.|++...+
T Consensus 184 fD~ILvDaPC 193 (470)
T PRK11933 184 FDAILLDAPC 193 (470)
T ss_pred cCeEEEcCCC
Confidence 9999976554
No 178
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.51 E-value=6.1e-07 Score=73.16 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=73.9
Q ss_pred HHHHHHHhhhcCCCCCE-EEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDKLLPGAN-VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~-VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
..-+++.|.+.+.+... |||||||||..+..+|+.+ ++.+...-|.+++.+...+..+... +..|+...+..|
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~-----~~~Nv~~P~~lD 84 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEA-----GLPNVRPPLALD 84 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhc-----CCcccCCCeEee
Confidence 45556666555666555 9999999999999999998 6678889999999987777776664 344543245566
Q ss_pred CCCC-Cc-------CCCCccEEEecCcCcCchHHHHH
Q psy425 219 ARKP-YK-------KNGPYDVIHFGSGVKHIPIEVSK 247 (254)
Q Consensus 219 ~~~~-~~-------~~~~fD~I~~~~~~~~~~~~l~~ 247 (254)
+... ++ ...+||+|++.+++|-+|....+
T Consensus 85 v~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~ 121 (204)
T PF06080_consen 85 VSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVE 121 (204)
T ss_pred cCCCCCccccccccCCCCcceeeehhHHHhcCHHHHH
Confidence 6643 21 23479999999999877765443
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.43 E-value=2e-06 Score=72.58 Aligned_cols=78 Identities=23% Similarity=0.220 Sum_probs=63.0
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
...+..+|+|||.|+|.++..+++.. |+.+++.+|. |+.++.+++ . ++|+ ++.+|+.+..+. +
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~-~~~gd~f~~~P~---~ 159 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVE-FVPGDFFDPLPV---A 159 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEE-EEES-TTTCCSS---E
T ss_pred cccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccc-cccccHHhhhcc---c
Confidence 55667899999999999999999996 7789999999 889888888 2 3899 999999854443 8
Q ss_pred cEEEecCcCcCchHH
Q psy425 230 DVIHFGSGVKHIPIE 244 (254)
Q Consensus 230 D~I~~~~~~~~~~~~ 244 (254)
|+|++..++++.+++
T Consensus 160 D~~~l~~vLh~~~d~ 174 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDE 174 (241)
T ss_dssp SEEEEESSGGGS-HH
T ss_pred cceeeehhhhhcchH
Confidence 999999999888764
No 180
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.43 E-value=9.5e-07 Score=79.19 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cCCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KKNGP 228 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~~~~ 228 (254)
.|++|||+.|=||.++..+|..+.. +||+||.|...++.|++|+..|+ +...++. |+++|+...+ ....+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg---~~~~~~~-~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNG---LDGDRHR-FIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcC---CCcccee-eehhhHHHHHHHHHhcCCc
Confidence 4999999999999999998877654 79999999999999999999986 3345688 9999997432 22347
Q ss_pred ccEEEecC
Q psy425 229 YDVIHFGS 236 (254)
Q Consensus 229 fD~I~~~~ 236 (254)
||+|++..
T Consensus 291 fDlIilDP 298 (393)
T COG1092 291 FDLIILDP 298 (393)
T ss_pred ccEEEECC
Confidence 99999985
No 181
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.42 E-value=4.8e-06 Score=67.02 Aligned_cols=93 Identities=22% Similarity=0.225 Sum_probs=71.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+...+.+.--.|.++||+.+|||.+++..+.++.. +++.||.+..++...++|++..+ ...+++ ++..|+
T Consensus 30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~----~~~~~~-~~~~da 102 (187)
T COG0742 30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALG----LEGEAR-VLRNDA 102 (187)
T ss_pred HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhC----CccceE-EEeecH
Confidence 44444555321247899999999999999999888655 79999999999999999998753 246788 899998
Q ss_pred CCC---CcCCCCccEEEecCcCc
Q psy425 220 RKP---YKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~---~~~~~~fD~I~~~~~~~ 239 (254)
... ....++||+|++...+.
T Consensus 103 ~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 103 LRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHhcCCCCcccEEEeCCCCc
Confidence 732 11223599999998875
No 182
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.41 E-value=2.4e-06 Score=71.48 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHH
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~ 193 (254)
.++.+|||+|||+|.++..+++.+. .+|+|+|++++++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHH
Confidence 3678999999999999999998842 379999999988765
No 183
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.38 E-value=2.8e-07 Score=75.66 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=63.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.+.++..+ ...+-.++||+|||||..+..+..+.. +.+|+|+|++|++.|.++-- .+ + +.++|+
T Consensus 114 l~emI~~~--~~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~--------YD--~-L~~Aea 177 (287)
T COG4976 114 LAEMIGKA--DLGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGL--------YD--T-LYVAEA 177 (287)
T ss_pred HHHHHHhc--cCCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccc--------hH--H-HHHHHH
Confidence 77777777 566678999999999999999988875 49999999999999987511 11 1 333444
Q ss_pred CCCC--cCCCCccEEEecCcCcCch
Q psy425 220 RKPY--KKNGPYDVIHFGSGVKHIP 242 (254)
Q Consensus 220 ~~~~--~~~~~fD~I~~~~~~~~~~ 242 (254)
.... ....+||+|++..++..+-
T Consensus 178 ~~Fl~~~~~er~DLi~AaDVl~YlG 202 (287)
T COG4976 178 VLFLEDLTQERFDLIVAADVLPYLG 202 (287)
T ss_pred HHHhhhccCCcccchhhhhHHHhhc
Confidence 3211 2345699999988886553
No 184
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.38 E-value=1.6e-06 Score=71.37 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=64.7
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhC----CCcccCCCeeEEE
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISY----PKLYKLYKIMDVV 215 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~v~~~~ 215 (254)
...+++.+ .+.+++.++|||||.|......|...+. .+.+|||+.+...+.|++..+... .......+++ +.
T Consensus 31 ~~~il~~~--~l~~~dvF~DlGSG~G~~v~~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~-l~ 106 (205)
T PF08123_consen 31 VSKILDEL--NLTPDDVFYDLGSGVGNVVFQAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE-LI 106 (205)
T ss_dssp HHHHHHHT--T--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE-EE
T ss_pred HHHHHHHh--CCCCCCEEEECCCCCCHHHHHHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce-ee
Confidence 66777877 7889999999999999998888876643 369999999999988876543311 0001235678 88
Q ss_pred EcCCCCCCcC---CCCccEEEecCcC--cCchHHHHHHHHhhc
Q psy425 216 EWDARKPYKK---NGPYDVIHFGSGV--KHIPIEVSKLCRSQK 253 (254)
Q Consensus 216 ~~d~~~~~~~---~~~fD~I~~~~~~--~~~~~~l~~~lr~lk 253 (254)
++|+...... -..-|+|++++.+ +.+...+.+.+..+|
T Consensus 107 ~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk 149 (205)
T PF08123_consen 107 HGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELK 149 (205)
T ss_dssp CS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-
T ss_pred ccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCC
Confidence 8888643211 1235999999865 334444555555554
No 185
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.36 E-value=5.2e-06 Score=73.64 Aligned_cols=92 Identities=20% Similarity=0.081 Sum_probs=72.7
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCC-------------------------------CC-------EE
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD-------------------------------KG-------HV 181 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~-------------------------------~~-------~v 181 (254)
.+.|+... .-.++..++|--||||.+.+..|.+... .+ .+
T Consensus 180 AaAil~la--gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 180 AAAILLLA--GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHc--CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 44444444 6677889999999999999998887631 11 37
Q ss_pred EEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcC
Q psy425 182 TAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 182 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~ 238 (254)
+|+|+++.+++.|+.|+...| ..+.|+ |.++|+.....+...+|+|++|...
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AG----v~d~I~-f~~~d~~~l~~~~~~~gvvI~NPPY 309 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAG----VGDLIE-FKQADATDLKEPLEEYGVVISNPPY 309 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcC----CCceEE-EEEcchhhCCCCCCcCCEEEeCCCc
Confidence 799999999999999999986 567799 9999998644442569999999766
No 186
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.2e-05 Score=71.81 Aligned_cols=83 Identities=28% Similarity=0.373 Sum_probs=68.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC---CcC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP---YKK 225 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~---~~~ 225 (254)
...+|.+|||++++.|.-|..+++.....+ .|+++|+++..++..++|+++. +..|+. +.+.|.... ...
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl-----G~~nv~-~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL-----GVRNVI-VVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc-----CCCceE-EEecccccccccccc
Confidence 788999999999999999999999986533 5699999999999999999995 577888 888887632 222
Q ss_pred CCCccEEEecCcC
Q psy425 226 NGPYDVIHFGSGV 238 (254)
Q Consensus 226 ~~~fD~I~~~~~~ 238 (254)
..+||.|++...+
T Consensus 227 ~~~fD~iLlDaPC 239 (355)
T COG0144 227 GEKFDRILLDAPC 239 (355)
T ss_pred cCcCcEEEECCCC
Confidence 3359999887655
No 187
>KOG1663|consensus
Probab=98.33 E-value=7.1e-06 Score=67.61 Aligned_cols=109 Identities=20% Similarity=0.263 Sum_probs=83.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+. .+...+++||||.=||+.++.+|..+.+.|+|+++|++++..+.+.+..+..+ ....|+ ++++++
T Consensus 61 ~g~fl~~li-~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag----v~~KI~-~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLI-RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG----VDHKIT-FIEGPA 134 (237)
T ss_pred HHHHHHHHH-HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc----ccceee-eeecch
Confidence 344555554 44467999999999999999999999889999999999999999988877765 566899 999988
Q ss_pred CCCC----c--CCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 220 RKPY----K--KNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~----~--~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
.+.. . +.+.||.+|+..--..-.+.+.+.++.+|+
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~ 175 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRV 175 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhccc
Confidence 7332 1 245799999987554444556666666654
No 188
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.33 E-value=4.9e-06 Score=67.36 Aligned_cols=101 Identities=21% Similarity=0.242 Sum_probs=72.8
Q ss_pred HHHHHHHhh--hcCCCCC-EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE
Q psy425 140 QAACLQHLS--DKLLPGA-NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE 216 (254)
Q Consensus 140 ~~~~l~~l~--~~~~~~~-~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 216 (254)
...+++.+. +.+.... +++|||+|.|.-++.+|-.. |..+++.+|.....+...+...... +..|++ +++
T Consensus 32 ~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L-----~L~nv~-v~~ 104 (184)
T PF02527_consen 32 ERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVREL-----GLSNVE-VIN 104 (184)
T ss_dssp HHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHH-----T-SSEE-EEE
T ss_pred HHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHh-----CCCCEE-EEE
Confidence 445555552 2344444 89999999999999999886 6789999999999999998888874 578999 999
Q ss_pred cCCCCCCcCCCCccEEEecCcCcCchHHHHHHHH
Q psy425 217 WDARKPYKKNGPYDVIHFGSGVKHIPIEVSKLCR 250 (254)
Q Consensus 217 ~d~~~~~~~~~~fD~I~~~~~~~~~~~~l~~~lr 250 (254)
+.+++ ......||+|++-++. .++. +.+..+
T Consensus 105 ~R~E~-~~~~~~fd~v~aRAv~-~l~~-l~~~~~ 135 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARAVA-PLDK-LLELAR 135 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEESSS-SHHH-HHHHHG
T ss_pred eeecc-cccCCCccEEEeehhc-CHHH-HHHHHH
Confidence 99987 3345569999998864 3443 444443
No 189
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.33 E-value=9.8e-06 Score=78.59 Aligned_cols=92 Identities=20% Similarity=0.096 Sum_probs=69.8
Q ss_pred HHHHHHHhhhcC-CCCCEEEEEcCCCChHHHHHHHHcC-----------------------------------------C
Q psy425 140 QAACLQHLSDKL-LPGANVLDLGFGSGFMSCCMARMVG-----------------------------------------D 177 (254)
Q Consensus 140 ~~~~l~~l~~~~-~~~~~VLDiG~G~G~~t~~la~~~~-----------------------------------------~ 177 (254)
.+.++... .. .++..++|.+||+|.+.+..|.+.. .
T Consensus 178 Aaa~l~~a--~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 178 AAAILLRS--GWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHc--CCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 45555444 44 5688999999999999988876421 1
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCccEEEecCcC
Q psy425 178 KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPYDVIHFGSGV 238 (254)
Q Consensus 178 ~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~fD~I~~~~~~ 238 (254)
..+++|+|+++++++.|++|+..+| ..+.++ +.++|+...... .++||+|++|..+
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g----~~~~i~-~~~~D~~~~~~~~~~~~~d~IvtNPPY 313 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAG----VAELIT-FEVKDVADLKNPLPKGPTGLVISNPPY 313 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcC----CCcceE-EEeCChhhcccccccCCCCEEEECCCC
Confidence 1369999999999999999999875 345688 999999754322 2469999999766
No 190
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=2.8e-06 Score=74.36 Aligned_cols=89 Identities=19% Similarity=0.116 Sum_probs=68.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc-C
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW-D 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~-d 218 (254)
.++++-.|. .+++|..|||--||||.+...+.-.+ . +++|+|++..|+.-|+.|++..+ ..... +... |
T Consensus 185 lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~G-~--~viG~Did~~mv~gak~Nl~~y~-----i~~~~-~~~~~D 254 (347)
T COG1041 185 LARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLMG-A--RVIGSDIDERMVRGAKINLEYYG-----IEDYP-VLKVLD 254 (347)
T ss_pred HHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhcC-c--eEeecchHHHHHhhhhhhhhhhC-----cCcee-EEEecc
Confidence 344444443 89999999999999999999966554 4 69999999999999999999863 44554 5555 8
Q ss_pred CCCCCcCCCCccEEEecCcC
Q psy425 219 ARKPYKKNGPYDVIHFGSGV 238 (254)
Q Consensus 219 ~~~~~~~~~~fD~I~~~~~~ 238 (254)
+.........+|.|+.....
T Consensus 255 a~~lpl~~~~vdaIatDPPY 274 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPY 274 (347)
T ss_pred cccCCCCCCccceEEecCCC
Confidence 88655555579999887654
No 191
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.29 E-value=5.3e-06 Score=76.10 Aligned_cols=76 Identities=24% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 154 GANVLDLGFGSGFMSCCMARMV---GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
+..|+|+|||+|-++...++.+ +...+|++||.++.++...++.+..++ ..++|+ ++++|+++-..+ .++|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~----w~~~V~-vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG----WGDKVT-VIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT----TTTTEE-EEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC----CCCeEE-EEeCcccCCCCC-Ccee
Confidence 4689999999999987766553 223489999999999988877766654 356899 999999974443 3699
Q ss_pred EEEec
Q psy425 231 VIHFG 235 (254)
Q Consensus 231 ~I~~~ 235 (254)
+|++-
T Consensus 261 IIVSE 265 (448)
T PF05185_consen 261 IIVSE 265 (448)
T ss_dssp EEEE-
T ss_pred EEEEe
Confidence 99775
No 192
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.27 E-value=6.8e-06 Score=71.38 Aligned_cols=90 Identities=19% Similarity=0.222 Sum_probs=74.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.| .+.++..++|.-+|.|..|..+++..+. ++|+|+|.++++++.|++++... ..+++ +++++.
T Consensus 9 l~Evl~~L--~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~------~~R~~-~i~~nF 78 (305)
T TIGR00006 9 LDEVVEGL--NIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDF------EGRVV-LIHDNF 78 (305)
T ss_pred HHHHHHhc--CcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhc------CCcEE-EEeCCH
Confidence 78888888 7788999999999999999999998754 89999999999999999998763 35799 999988
Q ss_pred CCCC-----cCCCCccEEEecCcCc
Q psy425 220 RKPY-----KKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~-----~~~~~fD~I~~~~~~~ 239 (254)
.... ....++|.|+...++.
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDLGVS 103 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEeccCC
Confidence 7321 1224699999988773
No 193
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.26 E-value=7.1e-06 Score=73.55 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=68.6
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CCCccEEE
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NGPYDVIH 233 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~~fD~I~ 233 (254)
-+|||+.||+|..++.++.....-.+|+++|+++++++.+++|++.+ ...+++ +.++|+...... ..+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N-----~~~~~~-v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN-----SVENIE-VPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh-----CCCcEE-EEchhHHHHHHHhCCCCCEEE
Confidence 58999999999999999987421237999999999999999999886 345788 999998743322 34699999
Q ss_pred ecCcCcCchHH-HHHHHHhhc
Q psy425 234 FGSGVKHIPIE-VSKLCRSQK 253 (254)
Q Consensus 234 ~~~~~~~~~~~-l~~~lr~lk 253 (254)
+.. + ..|.+ +..+++.++
T Consensus 120 lDP-f-Gs~~~fld~al~~~~ 138 (374)
T TIGR00308 120 IDP-F-GTPAPFVDSAIQASA 138 (374)
T ss_pred eCC-C-CCcHHHHHHHHHhcc
Confidence 977 4 45433 444445443
No 194
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.26 E-value=3e-06 Score=73.11 Aligned_cols=80 Identities=23% Similarity=0.197 Sum_probs=59.3
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---cCCCC
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---KKNGP 228 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---~~~~~ 228 (254)
..+.+|||+.|=||.++...+..+.. +|++||.|..+++.+++|+..|+ +...+++ ++..|+...+ ...++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg---~~~~~~~-~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNG---LDLDRHR-FIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT----CCTCEE-EEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcC---CCccceE-EEecCHHHHHHHHhcCCC
Confidence 36899999999999999987755433 79999999999999999999985 3346799 9999987422 23457
Q ss_pred ccEEEecCc
Q psy425 229 YDVIHFGSG 237 (254)
Q Consensus 229 fD~I~~~~~ 237 (254)
||+|++...
T Consensus 196 fD~IIlDPP 204 (286)
T PF10672_consen 196 FDLIILDPP 204 (286)
T ss_dssp EEEEEE--S
T ss_pred CCEEEECCC
Confidence 999998753
No 195
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=1.5e-05 Score=65.84 Aligned_cols=91 Identities=24% Similarity=0.224 Sum_probs=69.9
Q ss_pred HHHHHHHhh--hcCCC-CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE
Q psy425 140 QAACLQHLS--DKLLP-GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE 216 (254)
Q Consensus 140 ~~~~l~~l~--~~~~~-~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 216 (254)
...+++.+. +.... +.+++|||+|.|.-++.+|-.. +..+|+-+|.....+...++...+. +..|++ +++
T Consensus 51 ~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL-----~L~nv~-i~~ 123 (215)
T COG0357 51 QRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKEL-----GLENVE-IVH 123 (215)
T ss_pred HHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHh-----CCCCeE-Eeh
Confidence 444555542 12333 6899999999999999999554 6678999999999999999888874 678999 999
Q ss_pred cCCCCCCcCCCC-ccEEEecCcC
Q psy425 217 WDARKPYKKNGP-YDVIHFGSGV 238 (254)
Q Consensus 217 ~d~~~~~~~~~~-fD~I~~~~~~ 238 (254)
+.+++.... .. ||+|++-++.
T Consensus 124 ~RaE~~~~~-~~~~D~vtsRAva 145 (215)
T COG0357 124 GRAEEFGQE-KKQYDVVTSRAVA 145 (215)
T ss_pred hhHhhcccc-cccCcEEEeehcc
Confidence 999864432 23 9999998754
No 196
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.21 E-value=6.1e-06 Score=68.93 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=65.3
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC---CCCcCCCCccE
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR---KPYKKNGPYDV 231 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~---~~~~~~~~fD~ 231 (254)
..+||||||.|.+...+|+.- |...++|||+....+..|.+.+.+. +..|+. +++.|+. ....++++.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~-----~l~Nlr-i~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKEL-----GLKNLR-LLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHc-----CCCcEE-EEcCCHHHHHHhcCCCCCeeE
Confidence 589999999999999999995 6678999999999999999999885 345999 9999997 33445557999
Q ss_pred EEecCcC
Q psy425 232 IHFGSGV 238 (254)
Q Consensus 232 I~~~~~~ 238 (254)
|+++..=
T Consensus 123 I~i~FPD 129 (227)
T COG0220 123 IYINFPD 129 (227)
T ss_pred EEEECCC
Confidence 9998654
No 197
>KOG2899|consensus
Probab=98.20 E-value=3.7e-06 Score=69.67 Aligned_cols=55 Identities=25% Similarity=0.458 Sum_probs=46.8
Q ss_pred HHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 145 QHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 145 ~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
..|......+..+|||||-+|.+|..+|+.+++. .|.|+||++.+++.|+++++.
T Consensus 50 k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 50 KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred hhccccccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccc
Confidence 3344355678899999999999999999999763 699999999999999998764
No 198
>KOG2361|consensus
Probab=98.19 E-value=2.5e-06 Score=70.65 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=61.1
Q ss_pred EEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC----CCcCCCCcc
Q psy425 156 NVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK----PYKKNGPYD 230 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~----~~~~~~~fD 230 (254)
+|||||||.|.....+.+--.. +-+|+++|.+|.+++..+++... ...++. ....|+.. ..+..+++|
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~------~e~~~~-afv~Dlt~~~~~~~~~~~svD 146 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY------DESRVE-AFVWDLTSPSLKEPPEEGSVD 146 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc------chhhhc-ccceeccchhccCCCCcCccc
Confidence 8999999999999888876422 25899999999999999888654 234566 55666652 233456799
Q ss_pred EEEecCcCcCchH
Q psy425 231 VIHFGSGVKHIPI 243 (254)
Q Consensus 231 ~I~~~~~~~~~~~ 243 (254)
.|++..++..+++
T Consensus 147 ~it~IFvLSAi~p 159 (264)
T KOG2361|consen 147 IITLIFVLSAIHP 159 (264)
T ss_pred eEEEEEEEeccCh
Confidence 9999998866654
No 199
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.18 E-value=3.2e-06 Score=67.50 Aligned_cols=72 Identities=29% Similarity=0.298 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIH 233 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~ 233 (254)
.+.+.|+|+|||.++...|+.. . +|+++|.+|...+.|.+|+.-+ +..|++ ++.+|+....... -|+|+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A-~--rViAiE~dPk~a~~a~eN~~v~-----g~~n~e-vv~gDA~~y~fe~--ADvvi 101 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA-E--RVIAIEKDPKRARLAEENLHVP-----GDVNWE-VVVGDARDYDFEN--ADVVI 101 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh-c--eEEEEecCcHHHHHhhhcCCCC-----CCcceE-EEecccccccccc--cceeH
Confidence 4889999999999999988885 4 6999999999999999998664 578999 9999998654432 58887
Q ss_pred ecC
Q psy425 234 FGS 236 (254)
Q Consensus 234 ~~~ 236 (254)
|-.
T Consensus 102 cEm 104 (252)
T COG4076 102 CEM 104 (252)
T ss_pred HHH
Confidence 753
No 200
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.17 E-value=4.3e-06 Score=66.21 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred EEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchH---HHHHHHHhhcC
Q psy425 182 TAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPI---EVSKLCRSQKK 254 (254)
Q Consensus 182 ~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~---~l~~~lr~lk~ 254 (254)
+|+|+|++|++.|+++....+. ....+++ ++++|+......+++||+|+++.+++++++ .+.+..|+|||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~--~~~~~i~-~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR--SCYKCIE-WIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc--cCCCceE-EEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence 5899999999999887653110 0134799 999999876666678999999999987654 46677788775
No 201
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.16 E-value=8.7e-06 Score=71.32 Aligned_cols=93 Identities=19% Similarity=0.173 Sum_probs=62.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHc------CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeE
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMV------GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMD 213 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~ 213 (254)
...|++.+ ...++.+|+|.+||+|.+...+.+.. .....++|+|+++.++..|+-++.-++ ....+..
T Consensus 35 ~~l~~~~~--~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~---~~~~~~~- 108 (311)
T PF02384_consen 35 VDLMVKLL--NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG---IDNSNIN- 108 (311)
T ss_dssp HHHHHHHH--TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT---HHCBGCE-
T ss_pred HHHHHhhh--hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc---ccccccc-
Confidence 55566666 67788899999999999988877743 134589999999999999998876543 1223456
Q ss_pred EEEcCCCCCCc-C-CCCccEEEecCcC
Q psy425 214 VVEWDARKPYK-K-NGPYDVIHFGSGV 238 (254)
Q Consensus 214 ~~~~d~~~~~~-~-~~~fD~I~~~~~~ 238 (254)
+..+|...... . ...||+|+++..+
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf 135 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPF 135 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--C
T ss_pred ccccccccccccccccccccccCCCCc
Confidence 77888763222 2 4579999999766
No 202
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.15 E-value=1e-05 Score=70.07 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=71.7
Q ss_pred HHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC
Q psy425 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP 222 (254)
Q Consensus 143 ~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~ 222 (254)
....+ ...++.+|||+++|.|.-+..+++.....+.+++.|+++..+...++++++. +..++. +...|....
T Consensus 77 ~~~~L--~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~-----g~~~v~-~~~~D~~~~ 148 (283)
T PF01189_consen 77 VALAL--DPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL-----GVFNVI-VINADARKL 148 (283)
T ss_dssp HHHHH--TTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT-----T-SSEE-EEESHHHHH
T ss_pred ccccc--cccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc-----CCceEE-EEeeccccc
Confidence 34444 7789999999999999999999999987899999999999999999999985 577888 888887643
Q ss_pred C--cCCCCccEEEecCcC
Q psy425 223 Y--KKNGPYDVIHFGSGV 238 (254)
Q Consensus 223 ~--~~~~~fD~I~~~~~~ 238 (254)
. .....||.|++....
T Consensus 149 ~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 149 DPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp HHHHHTTTEEEEEEECSC
T ss_pred cccccccccchhhcCCCc
Confidence 1 223359999987655
No 203
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.15 E-value=1.9e-05 Score=69.74 Aligned_cols=86 Identities=19% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCc----c-cCCCeeEEEEcCCCC-----C
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKL----Y-KLYKIMDVVEWDARK-----P 222 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~-~~~~v~~~~~~d~~~-----~ 222 (254)
++.+|||+|||-|.-..-+... .-..++|+|++++.++.|+++........ . ..-... |+.+|... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~-f~~~D~f~~~l~~~ 138 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE-FIAADCFSESLREK 138 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE-EEESTTCCSHHHCT
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh-eeccccccchhhhh
Confidence 7899999999998876666554 23489999999999999999984321000 0 012355 78888762 1
Q ss_pred CcC-CCCccEEEecCcCcCc
Q psy425 223 YKK-NGPYDVIHFGSGVKHI 241 (254)
Q Consensus 223 ~~~-~~~fD~I~~~~~~~~~ 241 (254)
+.+ ..+||+|-+-.++|..
T Consensus 139 ~~~~~~~FDvVScQFalHY~ 158 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYA 158 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGG
T ss_pred ccccCCCcceeehHHHHHHh
Confidence 222 2579999999999744
No 204
>PLN02823 spermine synthase
Probab=98.14 E-value=2.5e-05 Score=69.11 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCccE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYDV 231 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD~ 231 (254)
...+||.||+|.|..+..+.+.. +..+|+.||+++++++.|++.+..++. .+..++++ ++.+|+..... ..++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~-~~~dprv~-v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE-AFCDKRLE-LIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc-cccCCceE-EEEChhHHHHhhCCCCccE
Confidence 45799999999999998887753 334799999999999999998764311 12356899 99999974332 2357999
Q ss_pred EEecC
Q psy425 232 IHFGS 236 (254)
Q Consensus 232 I~~~~ 236 (254)
|++..
T Consensus 180 Ii~D~ 184 (336)
T PLN02823 180 IIGDL 184 (336)
T ss_pred EEecC
Confidence 99984
No 205
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.14 E-value=1.8e-05 Score=66.67 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
...++||||+|.|..|..++..+.. |++.|.|+.|....+++ ..+ ++..+-.. ..+.+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~k------------g~~-vl~~~~w~--~~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSKK------------GFT-VLDIDDWQ--QTDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHhC------------CCe-EEehhhhh--ccCCceEEE
Confidence 3568999999999999999999864 99999999996554442 233 33332211 123469999
Q ss_pred EecCcCc--CchHHHHHHH
Q psy425 233 HFGSGVK--HIPIEVSKLC 249 (254)
Q Consensus 233 ~~~~~~~--~~~~~l~~~l 249 (254)
.|-+++. .-|..+++.+
T Consensus 156 scLNvLDRc~~P~~LL~~i 174 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDI 174 (265)
T ss_pred eehhhhhccCCHHHHHHHH
Confidence 9999993 4455555554
No 206
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.13 E-value=1e-05 Score=62.36 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=48.5
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
.+||+|||.|..+..+++.+ +.++|+++|.++++++.+++++..++ ..+++ +....+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~-----~~~v~-~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNN-----LPNVV-LLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcC-----CCcEE-EEEeeee
Confidence 48999999999999999885 55689999999999999999998753 34677 7766654
No 207
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=5.8e-06 Score=66.43 Aligned_cols=78 Identities=26% Similarity=0.281 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
.-.|++|||+|+|+|..++..++.+.. .|++.|+.|.....++-|.+.|+ .++. +...|... .+..||
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~ang------v~i~-~~~~d~~g---~~~~~D 144 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANG------VSIL-FTHADLIG---SPPAFD 144 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhcc------ceeE-EeeccccC---CCccee
Confidence 346899999999999999998888655 79999999999999999988863 4688 88888765 334599
Q ss_pred EEEecCcCcC
Q psy425 231 VIHFGSGVKH 240 (254)
Q Consensus 231 ~I~~~~~~~~ 240 (254)
+|+.+..+.+
T Consensus 145 l~LagDlfy~ 154 (218)
T COG3897 145 LLLAGDLFYN 154 (218)
T ss_pred EEEeeceecC
Confidence 9999998843
No 208
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.12 E-value=8.9e-06 Score=66.83 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCChHHHHH-HHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 153 PGANVLDLGFGSGFMSCCM-ARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~l-a~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
...++||+|||.|..|..+ .+.+ . +|..+|..+..++.|++.+.. ...++.++.+.-+.+..+..++||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~--~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~f~P~~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-D--EVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQDFTPEEGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--S--EEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG----TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHhc-C--EeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhhccCCCCcEeE
Confidence 4579999999999999755 4444 3 699999999999999987655 1235443777777654455568999
Q ss_pred EEecCcCcCchHH-HHHHHHh
Q psy425 232 IHFGSGVKHIPIE-VSKLCRS 251 (254)
Q Consensus 232 I~~~~~~~~~~~~-l~~~lr~ 251 (254)
|++.-++-|+.+. +.+-|+.
T Consensus 126 IW~QW~lghLTD~dlv~fL~R 146 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKR 146 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHH
T ss_pred EEehHhhccCCHHHHHHHHHH
Confidence 9999999888764 4444443
No 209
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.11 E-value=1e-05 Score=66.62 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=55.8
Q ss_pred EEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEEecC
Q psy425 157 VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGS 236 (254)
Q Consensus 157 VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~ 236 (254)
|.||||--|++...|.+.. ...+++++|+++..++.|++++..++ ..++++ ++.+|......+....|.|++.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~----l~~~i~-~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYG----LEDRIE-VRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-----TTTEE-EEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcC----CcccEE-EEECCcccccCCCCCCCEEEEec
Confidence 6899999999999999985 44579999999999999999999975 567899 99999876555443367776654
No 210
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.10 E-value=4.7e-05 Score=58.94 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=62.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCC
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMV---GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNG 227 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~ 227 (254)
..+...|+|+|||.|+++..++..+ .+..+|++||.++..++.++++.+..+.. ...+++ +..++...... ..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~-~~~~~~~~~~~-~~ 98 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--LEKRLS-FIQGDIADESS-SD 98 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--hhccch-hhccchhhhcc-cC
Confidence 3578899999999999999999843 24458999999999999999988774200 124566 66666543222 23
Q ss_pred CccEEEecCcCcCchHHHHH
Q psy425 228 PYDVIHFGSGVKHIPIEVSK 247 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~~l~~ 247 (254)
..++++.--+.-.+.+...+
T Consensus 99 ~~~~~vgLHaCG~Ls~~~l~ 118 (141)
T PF13679_consen 99 PPDILVGLHACGDLSDRALR 118 (141)
T ss_pred CCeEEEEeecccchHHHHHH
Confidence 35666655444444444333
No 211
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.01 E-value=4.4e-06 Score=68.94 Aligned_cols=99 Identities=20% Similarity=0.117 Sum_probs=72.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC--CcCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP--YKKNG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~--~~~~~ 227 (254)
.++.|.+|||.|.|-||.++...+++.. +|+.+|.+|+.++.|.-|--..+ +...+++ ++.+|+.+. ..+++
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~---l~~~~i~-iilGD~~e~V~~~~D~ 204 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSRE---LFEIAIK-IILGDAYEVVKDFDDE 204 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCcc---ccccccE-EecccHHHHHhcCCcc
Confidence 4567999999999999999998888654 79999999999999887743322 2334689 999998732 23466
Q ss_pred CccEEEecCcCc------CchHHHHHHHHhhcC
Q psy425 228 PYDVIHFGSGVK------HIPIEVSKLCRSQKK 254 (254)
Q Consensus 228 ~fD~I~~~~~~~------~~~~~l~~~lr~lk~ 254 (254)
+||+|+-...-- .-.+-..|.+|+||+
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkr 237 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKR 237 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCc
Confidence 799998664221 112335667788775
No 212
>PRK10742 putative methyltransferase; Provisional
Probab=97.99 E-value=3.3e-05 Score=64.93 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHHhhhcCCCCC--EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCC-CcccC---CCeeEE
Q psy425 141 AACLQHLSDKLLPGA--NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP-KLYKL---YKIMDV 214 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~--~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~---~~v~~~ 214 (254)
..++..+ .+++|. +|||+-+|+|..++.++.++. +|+++|-++.+....+++++.... ..... .+++ +
T Consensus 76 ~~l~kAv--glk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~-l 149 (250)
T PRK10742 76 EAVAKAV--GIKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQ-L 149 (250)
T ss_pred cHHHHHh--CCCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEE-E
Confidence 4556666 778888 999999999999999998853 599999999999999998887310 00111 4688 9
Q ss_pred EEcCCCCCCcC-CCCccEEEecCcCcC
Q psy425 215 VEWDARKPYKK-NGPYDVIHFGSGVKH 240 (254)
Q Consensus 215 ~~~d~~~~~~~-~~~fD~I~~~~~~~~ 240 (254)
+++|....... ...||+|++...+++
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 99998743221 235999999999865
No 213
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.93 E-value=5.4e-05 Score=62.13 Aligned_cols=82 Identities=16% Similarity=0.160 Sum_probs=68.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.++.+.++.||||--|++...|.+.. +..++++.|+++..++.|.+++..++ ..+.++ +..+|.......+..+
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~----l~~~i~-vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNN----LSERID-VRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcC----CcceEE-EeccCCccccCccCCc
Confidence 34567779999999999999998874 55689999999999999999999975 667898 9999997666666568
Q ss_pred cEEEecCc
Q psy425 230 DVIHFGSG 237 (254)
Q Consensus 230 D~I~~~~~ 237 (254)
|+|++.++
T Consensus 87 d~ivIAGM 94 (226)
T COG2384 87 DVIVIAGM 94 (226)
T ss_pred CEEEEeCC
Confidence 98876553
No 214
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.87 E-value=9.5e-05 Score=63.72 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
...+|||+|||+|..+..+....+...+++++|.|+.|++.++..+.... ...... . ..+.........+.|+|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~----~~~~~~-~-~~~~~~~~~~~~~~DLv 106 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP----NNRNAE-W-RRVLYRDFLPFPPDDLV 106 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc----ccccch-h-hhhhhcccccCCCCcEE
Confidence 45799999999998777777766544589999999999999998766521 111111 1 11111111122235999
Q ss_pred EecCcCcCchH
Q psy425 233 HFGSGVKHIPI 243 (254)
Q Consensus 233 ~~~~~~~~~~~ 243 (254)
+++.++.++++
T Consensus 107 i~s~~L~EL~~ 117 (274)
T PF09243_consen 107 IASYVLNELPS 117 (274)
T ss_pred EEehhhhcCCc
Confidence 99999988876
No 215
>KOG1975|consensus
Probab=97.86 E-value=5.8e-05 Score=65.16 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=61.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCc-ccCCCeeEEEEcCCCC-----CC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKL-YKLYKIMDVVEWDARK-----PY 223 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~v~~~~~~d~~~-----~~ 223 (254)
..++++.++|+|||-|.-.+-+-+.+ -+.++|+|+.+-.++.|+++.+...... ...-.+. |+.+|... ..
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~-f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV-FIAADCFKERLMDLL 190 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeE-EEEeccchhHHHHhc
Confidence 45789999999999999877665553 2379999999999999999887632000 0011367 89999861 22
Q ss_pred c-CCCCccEEEecCcCc
Q psy425 224 K-KNGPYDVIHFGSGVK 239 (254)
Q Consensus 224 ~-~~~~fD~I~~~~~~~ 239 (254)
+ ++.+||+|=+-.++|
T Consensus 191 e~~dp~fDivScQF~~H 207 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFH 207 (389)
T ss_pred cCCCCCcceeeeeeeEe
Confidence 2 233399998888775
No 216
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.86 E-value=9.5e-05 Score=69.51 Aligned_cols=94 Identities=13% Similarity=0.124 Sum_probs=64.6
Q ss_pred HHHHHHHhhhcCC-----CCCEEEEEcCCCChHHHHHHHHcCC-------CCEEEEEeCCHHHHHHHHHHHHhhCCCccc
Q psy425 140 QAACLQHLSDKLL-----PGANVLDLGFGSGFMSCCMARMVGD-------KGHVTAVDHIPQLINLFMTKLKISYPKLYK 207 (254)
Q Consensus 140 ~~~~l~~l~~~~~-----~~~~VLDiG~G~G~~t~~la~~~~~-------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~ 207 (254)
...|++.+.+... ...+|||.|||+|.+...++..... .-.++|+|+++.++..|+.++...+
T Consensus 13 a~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~----- 87 (524)
T TIGR02987 13 AKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA----- 87 (524)
T ss_pred HHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-----
Confidence 5666666532222 3469999999999999988876521 1368999999999999999987642
Q ss_pred CCCeeEEEEcCCCCC-----CcCCCCccEEEecCcCc
Q psy425 208 LYKIMDVVEWDARKP-----YKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 208 ~~~v~~~~~~d~~~~-----~~~~~~fD~I~~~~~~~ 239 (254)
...+. +.+.|.... ....+.||+|+.|..+-
T Consensus 88 ~~~~~-i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 88 LLEIN-VINFNSLSYVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred CCCce-eeecccccccccccccccCcccEEEeCCCcc
Confidence 12344 555554321 11124699999998774
No 217
>KOG2730|consensus
Probab=97.81 E-value=1.2e-05 Score=65.72 Aligned_cols=78 Identities=17% Similarity=0.025 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc----CCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK----KNGP 228 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~----~~~~ 228 (254)
....|+|..||.|..++.+|..+. .|++||++|.-+..|+.|++-.| ..++|+ |++||+.+... ....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYG----I~~rIt-FI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYG----VPDRIT-FICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeec----CCceeE-EEechHHHHHHHHhhhhhe
Confidence 457899999999999999998864 49999999999999999999886 456899 99999974321 1223
Q ss_pred ccEEEecCcC
Q psy425 229 YDVIHFGSGV 238 (254)
Q Consensus 229 fD~I~~~~~~ 238 (254)
+|+|+.+...
T Consensus 166 ~~~vf~sppw 175 (263)
T KOG2730|consen 166 YDCVFLSPPW 175 (263)
T ss_pred eeeeecCCCC
Confidence 6677776554
No 218
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.81 E-value=0.00054 Score=56.55 Aligned_cols=82 Identities=29% Similarity=0.327 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---cCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---KKN 226 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---~~~ 226 (254)
.+.+|.+||-+|+.+|..-.+++...++.|.|+++|.++...+..-..+++ -.||- .+..|+..+. ..-
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIi-PIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNII-PILEDARHPEKYRMLV 141 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEE-EEES-TTSGGGGTTTS
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCcee-eeeccCCChHHhhccc
Confidence 467899999999999999999999999899999999999766555544433 35888 8999998543 123
Q ss_pred CCccEEEecCcCc
Q psy425 227 GPYDVIHFGSGVK 239 (254)
Q Consensus 227 ~~fD~I~~~~~~~ 239 (254)
+.+|+|++.-+-+
T Consensus 142 ~~VDvI~~DVaQp 154 (229)
T PF01269_consen 142 EMVDVIFQDVAQP 154 (229)
T ss_dssp --EEEEEEE-SST
T ss_pred ccccEEEecCCCh
Confidence 4699999986543
No 219
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.80 E-value=8.8e-05 Score=60.59 Aligned_cols=89 Identities=18% Similarity=0.192 Sum_probs=56.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+. ..+++..|-|+|||-+.++..+. ..-+|+..|+... |-. +..+|+
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~--------------------n~~-Vtacdi 113 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP--------------------NPR-VTACDI 113 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S--------------------STT-EEES-T
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC--------------------CCC-EEEecC
Confidence 677788884 34456899999999999875543 2225999998632 223 667999
Q ss_pred CCCCcCCCCccEEEecCcC--cCchHHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGV--KHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~--~~~~~~l~~~lr~lk~ 254 (254)
...+.+++.+|+++...++ .+.++-+.|+.|+||+
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~ 150 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKP 150 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEE
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheecc
Confidence 8666677789999999888 6888999999999984
No 220
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.79 E-value=0.00023 Score=61.61 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCChH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCCcccCCCeeEEEEcCCC----CCC-cCC
Q psy425 154 GANVLDLGFGSGFM-SCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS-YPKLYKLYKIMDVVEWDAR----KPY-KKN 226 (254)
Q Consensus 154 ~~~VLDiG~G~G~~-t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~~~~v~~~~~~d~~----~~~-~~~ 226 (254)
.-++||||+|.-.+ .+..++.. ..+++|.|+++..++.|+++++.| + ...+|+ ++...-. ... ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~----L~~~I~-l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPN----LESRIE-LRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEE-EEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccc----cccceE-EEEcCCccccchhhhccc
Confidence 45899999998765 44444443 469999999999999999999997 4 556788 8765322 211 223
Q ss_pred CCccEEEecCcCcCchHH
Q psy425 227 GPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 227 ~~fD~I~~~~~~~~~~~~ 244 (254)
..||+.+|+..|+.-.++
T Consensus 176 e~~dftmCNPPFy~s~~e 193 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQEE 193 (299)
T ss_dssp S-EEEEEE-----SS---
T ss_pred ceeeEEecCCccccChhh
Confidence 479999999998655543
No 221
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.76 E-value=0.00014 Score=62.92 Aligned_cols=90 Identities=13% Similarity=0.100 Sum_probs=60.5
Q ss_pred CCEEEEEcCCCCh----HHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHh--------------h-----CCC---
Q psy425 154 GANVLDLGFGSGF----MSCCMARMVGD---KGHVTAVDHIPQLINLFMTKLKI--------------S-----YPK--- 204 (254)
Q Consensus 154 ~~~VLDiG~G~G~----~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~--------------~-----~~~--- 204 (254)
.-+|+..||.||- ++..+.+..+. ..+|+|+|+|+.+++.|++-.-. + +..
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 33444443321 34799999999999999874200 0 000
Q ss_pred ----cccCCCeeEEEEcCCCCC-CcCCCCccEEEecCcCcCchHH
Q psy425 205 ----LYKLYKIMDVVEWDARKP-YKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 205 ----~~~~~~v~~~~~~d~~~~-~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
...-..|+ |...|+... ++..+.||+|+|.+++.++.++
T Consensus 196 ~~v~~~lr~~V~-F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~ 239 (287)
T PRK10611 196 VRVRQELANYVD-FQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT 239 (287)
T ss_pred EEEChHHHccCE-EEcccCCCCCCccCCCcceeeHhhHHhcCCHH
Confidence 00124578 999999863 3335679999999999877554
No 222
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00024 Score=61.32 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=64.4
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CCCccEEE
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NGPYDVIH 233 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~~fD~I~ 233 (254)
.+||-||-|.|..+..+.++. +..+++.||+++..++.|++.+....... ..++++ ++..|+.+.... ..+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~-~dpRv~-i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGA-DDPRVE-IIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCccccc-CCCceE-EEeccHHHHHHhCCCcCCEEE
Confidence 699999999999999999885 45689999999999999999987632111 147899 999999743332 22699999
Q ss_pred ecCcCc
Q psy425 234 FGSGVK 239 (254)
Q Consensus 234 ~~~~~~ 239 (254)
+...=+
T Consensus 155 ~D~tdp 160 (282)
T COG0421 155 VDSTDP 160 (282)
T ss_pred EcCCCC
Confidence 987654
No 223
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.73 E-value=0.00011 Score=68.75 Aligned_cols=79 Identities=14% Similarity=0.050 Sum_probs=63.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC--CCCcCCCCcc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR--KPYKKNGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~--~~~~~~~~fD 230 (254)
.+..+||||||.|.++..+|... +...++|+|++...+..+.+.+... +..|+. ++..|+. ....+++++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~-----~l~N~~-~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQ-----NITNFL-LFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHc-----CCCeEE-EEcCCHHHHHHhcCccccc
Confidence 45689999999999999999996 6678999999999999888887664 467898 9888875 2223455699
Q ss_pred EEEecCcC
Q psy425 231 VIHFGSGV 238 (254)
Q Consensus 231 ~I~~~~~~ 238 (254)
.|+++..=
T Consensus 420 ~i~i~FPD 427 (506)
T PRK01544 420 GIYILFPD 427 (506)
T ss_pred EEEEECCC
Confidence 99998754
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.70 E-value=0.00054 Score=58.77 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=48.7
Q ss_pred CCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh-hCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 154 GANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI-SYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 154 ~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
..+|+=||||. -..++.+++..+....|+++|+++++++.+++.+.. .+ ...+++ |+.+|+.....+...||+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~----L~~~m~-f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLG----LSKRMS-FITADVLDVTYDLKEYDV 195 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---H----H-SSEE-EEES-GGGG-GG----SE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccc----ccCCeE-EEecchhccccccccCCE
Confidence 35999999997 555677777666666899999999999999988772 21 345799 999998754444456999
Q ss_pred EEecCcCc
Q psy425 232 IHFGSGVK 239 (254)
Q Consensus 232 I~~~~~~~ 239 (254)
|++.+-..
T Consensus 196 V~lAalVg 203 (276)
T PF03059_consen 196 VFLAALVG 203 (276)
T ss_dssp EEE-TT-S
T ss_pred EEEhhhcc
Confidence 99887664
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.68 E-value=0.0004 Score=56.80 Aligned_cols=93 Identities=11% Similarity=0.061 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCCCh----HHHHHHHHcC---C-CCEEEEEeCCHHHHHHHHHHH--------------Hhh-----CCC-
Q psy425 153 PGANVLDLGFGSGF----MSCCMARMVG---D-KGHVTAVDHIPQLINLFMTKL--------------KIS-----YPK- 204 (254)
Q Consensus 153 ~~~~VLDiG~G~G~----~t~~la~~~~---~-~~~v~gvD~s~~~l~~a~~~~--------------~~~-----~~~- 204 (254)
+.-+|+-+||+||. ++..+.+... + .-+++|.|+|+.+++.|++-. .++ +..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999995 3344444221 1 248999999999999997621 110 000
Q ss_pred ---cccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchHHHH
Q psy425 205 ---LYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIEVS 246 (254)
Q Consensus 205 ---~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~l~ 246 (254)
.....+|+ |.+.|+....+..+.||+|+|-+++-.+.++..
T Consensus 111 ~v~~~lr~~V~-F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~ 154 (196)
T PF01739_consen 111 RVKPELRKMVR-FRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQ 154 (196)
T ss_dssp TE-HHHHTTEE-EEE--TT-S------EEEEEE-SSGGGS-HHHH
T ss_pred eEChHHcCceE-EEecccCCCCcccCCccEEEecCEEEEeCHHHH
Confidence 00124688 999999874455667999999999987776543
No 226
>PRK00536 speE spermidine synthase; Provisional
Probab=97.67 E-value=0.00075 Score=57.62 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
+..++||=||-|-|.....+.++- . +|+-||+++++++.+++.+..... .+..++++ ++.. +.+ ...++||+
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~--~v~mVeID~~Vv~~~k~~lP~~~~-~~~DpRv~-l~~~-~~~--~~~~~fDV 142 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-T--HVDFVQADEKILDSFISFFPHFHE-VKNNKNFT-HAKQ-LLD--LDIKKYDL 142 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-C--eeEEEECCHHHHHHHHHHCHHHHH-hhcCCCEE-Eeeh-hhh--ccCCcCCE
Confidence 456899999999999999988872 2 899999999999999997655321 13456787 7652 211 12356999
Q ss_pred EEecCcCcCchHHHHHHHHhhc
Q psy425 232 IHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 232 I~~~~~~~~~~~~l~~~lr~lk 253 (254)
|++...+. ++.+....+.|+
T Consensus 143 IIvDs~~~--~~fy~~~~~~L~ 162 (262)
T PRK00536 143 IICLQEPD--IHKIDGLKRMLK 162 (262)
T ss_pred EEEcCCCC--hHHHHHHHHhcC
Confidence 99986532 333334445554
No 227
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.00049 Score=59.19 Aligned_cols=91 Identities=22% Similarity=0.204 Sum_probs=76.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.| .+.++...+|.--|.|..+..+...+++.++++|+|.++.+++.|++++..+ .+++. +++.++
T Consensus 12 l~E~i~~L--~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~-~v~~~F 82 (314)
T COG0275 12 LNEVVELL--APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVT-LVHGNF 82 (314)
T ss_pred HHHHHHhc--ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEE-EEeCcH
Confidence 77888888 8889999999999999999999999877788999999999999999998874 46899 999987
Q ss_pred CCCC-----cCCCCccEEEecCcCc
Q psy425 220 RKPY-----KKNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~-----~~~~~fD~I~~~~~~~ 239 (254)
.... ...+++|-|+...++.
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEeccCC
Confidence 6321 1134689888877663
No 228
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.62 E-value=0.00071 Score=59.46 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=62.7
Q ss_pred hhhcCCCCCEEEEEcCCCChHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEE--EEcCCCC
Q psy425 147 LSDKLLPGANVLDLGFGSGFMSCCMARMVGD---KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDV--VEWDARK 221 (254)
Q Consensus 147 l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~--~~~d~~~ 221 (254)
+...+.++..++|+|||+|..+..|.+.+.+ ..+++++|+|.++++.+.+++... ..+.++ + +++|..+
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~-----~~p~l~-v~~l~gdy~~ 143 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG-----NFSHVR-CAGLLGTYDD 143 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc-----cCCCeE-EEEEEecHHH
Confidence 3335667889999999999998877766532 347999999999999999998821 345565 5 7888764
Q ss_pred CC---cC---CCCccEE-EecCcCcCchH
Q psy425 222 PY---KK---NGPYDVI-HFGSGVKHIPI 243 (254)
Q Consensus 222 ~~---~~---~~~fD~I-~~~~~~~~~~~ 243 (254)
+. +. .....++ +.+.++-++++
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~ 172 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSR 172 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCH
Confidence 31 11 1224444 55567777655
No 229
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.61 E-value=0.00021 Score=60.68 Aligned_cols=85 Identities=20% Similarity=0.142 Sum_probs=60.8
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CC-C
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NG-P 228 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~-~ 228 (254)
.+...+||-||-|.|..+..+.+.- +..+++.||+++.+++.|++.+...... ...++++ ++.+|+...... .. +
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-~~d~r~~-i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEG-LDDPRVR-IIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTT-GGSTTEE-EEESTHHHHHHTSSST-
T ss_pred CCCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccc-cCCCceE-EEEhhhHHHHHhccCCc
Confidence 3468999999999999998887663 3358999999999999999987653110 2356899 999999732221 22 6
Q ss_pred ccEEEecCcC
Q psy425 229 YDVIHFGSGV 238 (254)
Q Consensus 229 fD~I~~~~~~ 238 (254)
||+|++...-
T Consensus 151 yDvIi~D~~d 160 (246)
T PF01564_consen 151 YDVIIVDLTD 160 (246)
T ss_dssp EEEEEEESSS
T ss_pred ccEEEEeCCC
Confidence 9999987654
No 230
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00024 Score=58.05 Aligned_cols=71 Identities=27% Similarity=0.370 Sum_probs=57.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
+.++.+|+|+||..|.++..+++..++.++|+|+|+.|-- ...+|. ++++|+....
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------------~~~~V~-~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------------PIPGVI-FLQGDITDEDTLEKLLE 105 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------------cCCCce-EEeeeccCccHHHHHHH
Confidence 5689999999999999999999999888889999998631 245698 9999998432
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
....++|+|++.++-
T Consensus 106 ~l~~~~~DvV~sD~ap 121 (205)
T COG0293 106 ALGGAPVDVVLSDMAP 121 (205)
T ss_pred HcCCCCcceEEecCCC
Confidence 223457999988765
No 231
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.60 E-value=0.00023 Score=62.48 Aligned_cols=72 Identities=25% Similarity=0.194 Sum_probs=54.3
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
+.+|.++||+||++|.+|-.+.+++. +|++||..+ + ...+. ..++|+ ...+|.....+..+++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l----~~~L~-------~~~~V~-h~~~d~fr~~p~~~~vD 272 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-M----AQSLM-------DTGQVE-HLRADGFKFRPPRKNVD 272 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-c----CHhhh-------CCCCEE-EEeccCcccCCCCCCCC
Confidence 36899999999999999999998853 799999654 2 12222 246898 88888875444356799
Q ss_pred EEEecCcC
Q psy425 231 VIHFGSGV 238 (254)
Q Consensus 231 ~I~~~~~~ 238 (254)
.|++..+.
T Consensus 273 wvVcDmve 280 (357)
T PRK11760 273 WLVCDMVE 280 (357)
T ss_pred EEEEeccc
Confidence 99998864
No 232
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.54 E-value=0.00019 Score=62.53 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=65.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.| .+.++..++|.--|.|.+|..+.+.+.+ ++++|+|.++++++.|++++.. ..+++. +++++.
T Consensus 9 l~Evl~~L--~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~------~~~r~~-~~~~~F 78 (310)
T PF01795_consen 9 LKEVLEAL--NPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK------FDDRFI-FIHGNF 78 (310)
T ss_dssp HHHHHHHH--T--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC------CCTTEE-EEES-G
T ss_pred HHHHHHhh--CcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh------ccceEE-EEeccH
Confidence 88889999 7889999999999999999999998755 8999999999999999998875 246899 999988
Q ss_pred CCCC-----c-CCCCccEEEecCcCc
Q psy425 220 RKPY-----K-KNGPYDVIHFGSGVK 239 (254)
Q Consensus 220 ~~~~-----~-~~~~fD~I~~~~~~~ 239 (254)
.+.. . ....+|-|++..++.
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DLGvS 104 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDLGVS 104 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-S--
T ss_pred HHHHHHHHHccCCCccCEEEEccccC
Confidence 6321 1 234699999887763
No 233
>KOG2940|consensus
Probab=97.54 E-value=0.00016 Score=59.66 Aligned_cols=92 Identities=12% Similarity=0.018 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
....++|||||-|++...+.... -.+++-+|.|-.|++.++..-.. .-.+. ...+|-+.....++++|+|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp-------~i~~~-~~v~DEE~Ldf~ens~DLi 141 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDP-------SIETS-YFVGDEEFLDFKENSVDLI 141 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCC-------ceEEE-EEecchhcccccccchhhh
Confidence 45689999999999998876553 24699999999999998775211 11244 5677877555667789999
Q ss_pred EecCcCc---CchHHHHHHHHhhcC
Q psy425 233 HFGSGVK---HIPIEVSKLCRSQKK 254 (254)
Q Consensus 233 ~~~~~~~---~~~~~l~~~lr~lk~ 254 (254)
+++..+| ++|.-+.+.--.+||
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKP 166 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKP 166 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCC
Confidence 9999885 667666665555554
No 234
>KOG1122|consensus
Probab=97.54 E-value=0.00043 Score=61.87 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=70.6
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~ 227 (254)
.+++|.+|||+++..|.-|.++|.+.+.+|.|++.|.+.+.++..+.|+.+. +..|.. +...|..+.... .+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl-----Gv~nti-v~n~D~~ef~~~~~~~ 311 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL-----GVTNTI-VSNYDGREFPEKEFPG 311 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh-----CCCceE-EEccCcccccccccCc
Confidence 6789999999999999999999999988899999999999999999999995 577888 888888642211 12
Q ss_pred CccEEEecCcCc
Q psy425 228 PYDVIHFGSGVK 239 (254)
Q Consensus 228 ~fD~I~~~~~~~ 239 (254)
+||.|+..+.+.
T Consensus 312 ~fDRVLLDAPCS 323 (460)
T KOG1122|consen 312 SFDRVLLDAPCS 323 (460)
T ss_pred ccceeeecCCCC
Confidence 699998776553
No 235
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.48 E-value=0.0019 Score=55.47 Aligned_cols=85 Identities=13% Similarity=0.002 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCe-eEEEEcCCCCC--CcC-CC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKI-MDVVEWDARKP--YKK-NG 227 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v-~~~~~~d~~~~--~~~-~~ 227 (254)
..-+||||.||.|..-+........ ...|...|.++.-++..++.+++.| ..++ + |.++|+.+. ... .-
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g-----L~~i~~-f~~~dAfd~~~l~~l~p 208 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG-----LEDIAR-FEQGDAFDRDSLAALDP 208 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC-----CccceE-EEecCCCCHhHhhccCC
Confidence 4569999999999988777766543 2489999999999999999999864 5555 8 999999743 222 22
Q ss_pred CccEEEecCcCcCchH
Q psy425 228 PYDVIHFGSGVKHIPI 243 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~ 243 (254)
..+++++++.++-+++
T Consensus 209 ~P~l~iVsGL~ElF~D 224 (311)
T PF12147_consen 209 APTLAIVSGLYELFPD 224 (311)
T ss_pred CCCEEEEecchhhCCc
Confidence 3799999999988776
No 236
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.45 E-value=8.1e-05 Score=59.94 Aligned_cols=68 Identities=28% Similarity=0.347 Sum_probs=45.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC---------Cc
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP---------YK 224 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~---------~~ 224 (254)
+.+|||+||++|.++..+.++.++.++|+|+|+.+. . ...++. ++.+|+... ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----------~------~~~~~~-~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----------D------PLQNVS-FIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----------G------S-TTEE-BTTGGGEEEEHSHHGGGSHG
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc----------c------ccccee-eeecccchhhHHHhhhhhcc
Confidence 489999999999999999998755678999999977 1 123455 555655411 11
Q ss_pred -CCCCccEEEecCcC
Q psy425 225 -KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 -~~~~fD~I~~~~~~ 238 (254)
...+||+|++..+.
T Consensus 87 ~~~~~~dlv~~D~~~ 101 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAP 101 (181)
T ss_dssp TTTCSESEEEE----
T ss_pred ccccCcceecccccc
Confidence 12579999999854
No 237
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.44 E-value=0.0021 Score=55.04 Aligned_cols=104 Identities=10% Similarity=0.030 Sum_probs=67.0
Q ss_pred HHHHHHHhhhcCC-CCCEEEEEcCCCCh----HHHHHHHHcCC----CCEEEEEeCCHHHHHHHHHHH-H-----hh---
Q psy425 140 QAACLQHLSDKLL-PGANVLDLGFGSGF----MSCCMARMVGD----KGHVTAVDHIPQLINLFMTKL-K-----IS--- 201 (254)
Q Consensus 140 ~~~~l~~l~~~~~-~~~~VLDiG~G~G~----~t~~la~~~~~----~~~v~gvD~s~~~l~~a~~~~-~-----~~--- 201 (254)
...++..+..... ..-+|+-+||+||- ++..+.+..+. .-+|+|.|+|..+++.|+.-. . ++
T Consensus 82 ~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~ 161 (268)
T COG1352 82 RDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPP 161 (268)
T ss_pred HHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCH
Confidence 4444444432222 25699999999994 55555565532 358999999999999996521 1 10
Q ss_pred ---------CCC------cccCCCeeEEEEcCCCCCCcCCCCccEEEecCcCcCchHH
Q psy425 202 ---------YPK------LYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIE 244 (254)
Q Consensus 202 ---------~~~------~~~~~~v~~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~~~ 244 (254)
+.+ ......|. |...|+....+..+.||+|+|-+++-.+..+
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~-F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~ 218 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVR-FRRHNLLDDSPFLGKFDLIFCRNVLIYFDEE 218 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHhcccE-EeecCCCCCccccCCCCEEEEcceEEeeCHH
Confidence 000 00123577 9999988655345569999999999666554
No 238
>KOG1227|consensus
Probab=97.35 E-value=0.00025 Score=60.69 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCChHHH-HHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccE
Q psy425 153 PGANVLDLGFGSGFMSC-CMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDV 231 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~-~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~ 231 (254)
.+..|.|+-+|.||+++ .+...... .|+++|.+|..++..+++++.|+ ..++.. ++.+|-+..-+ ....|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk--~V~A~EwNp~svEaLrR~~~~N~----V~~r~~-i~~gd~R~~~~-~~~Adr 265 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAK--TVFACEWNPWSVEALRRNAEANN----VMDRCR-ITEGDNRNPKP-RLRADR 265 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCcc--EEEEEecCHHHHHHHHHHHHhcc----hHHHHH-hhhccccccCc-cccchh
Confidence 56899999999999999 55555434 79999999999999999998874 344555 66777665333 345788
Q ss_pred EEecCcCcCchHHHHHHHHhhcC
Q psy425 232 IHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 232 I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
|..+.- +.-...|..+++.||+
T Consensus 266 VnLGLl-PSse~~W~~A~k~Lk~ 287 (351)
T KOG1227|consen 266 VNLGLL-PSSEQGWPTAIKALKP 287 (351)
T ss_pred eeeccc-cccccchHHHHHHhhh
Confidence 888763 4445557777777764
No 239
>KOG1269|consensus
Probab=97.29 E-value=0.00057 Score=61.03 Aligned_cols=102 Identities=25% Similarity=0.199 Sum_probs=78.5
Q ss_pred HhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC
Q psy425 146 HLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK 225 (254)
Q Consensus 146 ~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~ 225 (254)
.+.....++..++|+|||.|..+..++...+. .++|++.++..+..+........ ...+-. ++.+|+...+.+
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~--~~~Gl~~n~~e~~~~~~~~~~~~----l~~k~~-~~~~~~~~~~fe 175 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKA--GVVGLDNNAYEAFRANELAKKAY----LDNKCN-FVVADFGKMPFE 175 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccC--CccCCCcCHHHHHHHHHHHHHHH----hhhhcc-eehhhhhcCCCC
Confidence 33335678889999999999999999887544 79999999998888876655432 223445 778888877777
Q ss_pred CCCccEEEecCcCcCchHH---HHHHHHhhcC
Q psy425 226 NGPYDVIHFGSGVKHIPIE---VSKLCRSQKK 254 (254)
Q Consensus 226 ~~~fD~I~~~~~~~~~~~~---l~~~lr~lk~ 254 (254)
++.||.+.+..+..|.|.. +.|+.|++|+
T Consensus 176 dn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kp 207 (364)
T KOG1269|consen 176 DNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKP 207 (364)
T ss_pred ccccCcEEEEeecccCCcHHHHHHHHhcccCC
Confidence 7789999999998888764 6777777764
No 240
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.29 E-value=0.0046 Score=46.48 Aligned_cols=90 Identities=24% Similarity=0.285 Sum_probs=54.8
Q ss_pred EEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC--CCcCC-CCccEEE
Q psy425 157 VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK--PYKKN-GPYDVIH 233 (254)
Q Consensus 157 VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~--~~~~~-~~fD~I~ 233 (254)
++|+|||+|..+ .++........++++|+++.++..++...... ....+. +..+|... ..... ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA-----GLGLVD-FVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc-----CCCceE-EEEeccccCCCCCCCCCceeEEe
Confidence 999999999977 44444332136999999999998855443221 111167 78888764 22223 3699994
Q ss_pred ecCcCcCc--hHHHHHHHHhhc
Q psy425 234 FGSGVKHI--PIEVSKLCRSQK 253 (254)
Q Consensus 234 ~~~~~~~~--~~~l~~~lr~lk 253 (254)
......+. ...+.+..+.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~ 146 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLK 146 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcC
Confidence 44444333 334455555554
No 241
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0016 Score=54.15 Aligned_cols=87 Identities=17% Similarity=0.151 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~f 229 (254)
.++..+||||+-||.+|..+.+.+.. +|+|+|..-..+..--++ .+++..+...|+....++ .+..
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~kLR~----------d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWKLRN----------DPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHhHhc----------CCcEEEEecCChhhCCHHHcccCC
Confidence 36899999999999999999999766 899999998776554332 345541445566532221 2357
Q ss_pred cEEEecCcCcCchHHHHHHHH
Q psy425 230 DVIHFGSGVKHIPIEVSKLCR 250 (254)
Q Consensus 230 D~I~~~~~~~~~~~~l~~~lr 250 (254)
|++++.-+|-.+...+-..+.
T Consensus 146 d~~v~DvSFISL~~iLp~l~~ 166 (245)
T COG1189 146 DLIVIDVSFISLKLILPALLL 166 (245)
T ss_pred CeEEEEeehhhHHHHHHHHHH
Confidence 899998888655544433333
No 242
>KOG4058|consensus
Probab=97.25 E-value=0.0012 Score=51.03 Aligned_cols=99 Identities=18% Similarity=0.077 Sum_probs=67.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
.+..+..+ .-.+..+.+|+|+|.|.+-...++.+.. ..+|+|+++-++.+++-..-+.+ ...... |...|+
T Consensus 61 v~nVLSll--~~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R~g----~~k~tr-f~Rkdl 131 (199)
T KOG4058|consen 61 VENVLSLL--RGNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWRAG----CAKSTR-FRRKDL 131 (199)
T ss_pred HHHHHHHc--cCCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHHHh----cccchh-hhhhhh
Confidence 45556666 4566689999999999999888877522 48999999999999988776654 345677 888888
Q ss_pred CCCCcCCCCccEEEecCcCcCchHHHHHHHH
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHIPIEVSKLCR 250 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~~~~l~~~lr 250 (254)
..... ..|..|++.++-.-+|+ +...|+
T Consensus 132 wK~dl--~dy~~vviFgaes~m~d-Le~KL~ 159 (199)
T KOG4058|consen 132 WKVDL--RDYRNVVIFGAESVMPD-LEDKLR 159 (199)
T ss_pred hhccc--cccceEEEeehHHHHhh-hHHHHH
Confidence 75322 23555555554333333 444443
No 243
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.21 E-value=0.0024 Score=53.73 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=63.4
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+.+.+...+.+..+|+|||||-==+++.+.... +...++|+|++..+++.....+... ..+.+ +...|.
T Consensus 92 Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l------~~~~~-~~v~Dl 163 (251)
T PF07091_consen 92 LDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVL------GVPHD-ARVRDL 163 (251)
T ss_dssp HHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHT------T-CEE-EEEE-T
T ss_pred HHHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhh------CCCcc-eeEeee
Confidence 555666665566678999999999888887766442 4568999999999999999988873 35677 888898
Q ss_pred CCCCcCCCCccEEEecCcCcCc
Q psy425 220 RKPYKKNGPYDVIHFGSGVKHI 241 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~~~~ 241 (254)
....+ ....|+.++-=+++.+
T Consensus 164 ~~~~~-~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 164 LSDPP-KEPADLALLLKTLPCL 184 (251)
T ss_dssp TTSHT-TSEESEEEEET-HHHH
T ss_pred eccCC-CCCcchhhHHHHHHHH
Confidence 75433 3458999886655433
No 244
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.14 E-value=9.1e-05 Score=54.19 Aligned_cols=74 Identities=22% Similarity=0.327 Sum_probs=24.6
Q ss_pred EEEcCCCChHHHHHHHHcCCCC--EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCccEEE
Q psy425 158 LDLGFGSGFMSCCMARMVGDKG--HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPYDVIH 233 (254)
Q Consensus 158 LDiG~G~G~~t~~la~~~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~fD~I~ 233 (254)
||||+..|..+..+++.+.+.+ +++++|..+. .+.+++.+++.+ ...+++ ++.++..+..+. ..++|+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~----~~~~~~-~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAG----LSDRVE-FIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GG----G-BTEE-EEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcC----CCCeEE-EEEcCcHHHHHHcCCCCEEEEE
Confidence 6999999999999998875544 7999999995 333334333321 345799 999998643221 35799999
Q ss_pred ecCc
Q psy425 234 FGSG 237 (254)
Q Consensus 234 ~~~~ 237 (254)
+.+.
T Consensus 75 iDg~ 78 (106)
T PF13578_consen 75 IDGD 78 (106)
T ss_dssp EES-
T ss_pred ECCC
Confidence 9985
No 245
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0036 Score=50.89 Aligned_cols=79 Identities=29% Similarity=0.354 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---CC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---KN 226 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---~~ 226 (254)
.+.+|.+||=+|+.+|....+++...+ .|.++|||+++......-..+.+ -.|+- .+.+|+..+.. --
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~-PIL~DA~~P~~Y~~~V 143 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNII-PILEDARKPEKYRHLV 143 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCce-eeecccCCcHHhhhhc
Confidence 467899999999999999999999987 78999999999887666555544 24777 78888875431 12
Q ss_pred CCccEEEecCc
Q psy425 227 GPYDVIHFGSG 237 (254)
Q Consensus 227 ~~fD~I~~~~~ 237 (254)
+.+|+|+..-+
T Consensus 144 e~VDviy~DVA 154 (231)
T COG1889 144 EKVDVIYQDVA 154 (231)
T ss_pred ccccEEEEecC
Confidence 34788877644
No 246
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.07 E-value=0.00093 Score=54.72 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHh
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
.+-+++|-+||+|++...+.-+.+.. ..|+|-|+++++++.|++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 45699999999999998887664332 3799999999999999998753
No 247
>KOG3045|consensus
Probab=97.07 E-value=0.0029 Score=53.33 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=65.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA 219 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~ 219 (254)
...+++.+. .......|-|+|||-+.++. .. .-.|+++|+.+ .|-. +..+|+
T Consensus 168 ld~ii~~ik-~r~~~~vIaD~GCGEakiA~---~~---~~kV~SfDL~a--------------------~~~~-V~~cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIK-RRPKNIVIADFGCGEAKIAS---SE---RHKVHSFDLVA--------------------VNER-VIACDM 219 (325)
T ss_pred HHHHHHHHH-hCcCceEEEecccchhhhhh---cc---ccceeeeeeec--------------------CCCc-eeeccc
Confidence 566677773 33456789999999998854 11 12599999852 2344 778999
Q ss_pred CCCCcCCCCccEEEecCcC--cCchHHHHHHHHhhcC
Q psy425 220 RKPYKKNGPYDVIHFGSGV--KHIPIEVSKLCRSQKK 254 (254)
Q Consensus 220 ~~~~~~~~~fD~I~~~~~~--~~~~~~l~~~lr~lk~ 254 (254)
...+.++++.|+++...++ .++.+.+.++.|+||+
T Consensus 220 ~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~ 256 (325)
T KOG3045|consen 220 RNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKP 256 (325)
T ss_pred cCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhcc
Confidence 9877778889999888777 6888899999999984
No 248
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.04 E-value=0.002 Score=53.90 Aligned_cols=94 Identities=26% Similarity=0.382 Sum_probs=54.1
Q ss_pred HHHHHHhhhcCCCCC--EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh--CCCc--ccCCCeeEE
Q psy425 141 AACLQHLSDKLLPGA--NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS--YPKL--YKLYKIMDV 214 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~--~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--~~~~--~~~~~v~~~ 214 (254)
..++..+ .++++. +|||.-+|-|.-++.+|.. |. +|+++|-||-+....+.-++.. +.+. ....+++ +
T Consensus 63 ~~l~kA~--Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~-l 136 (234)
T PF04445_consen 63 DPLAKAV--GLKPGMRPSVLDATAGLGRDAFVLASL-GC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQ-L 136 (234)
T ss_dssp SHHHHHT--T-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEE-E
T ss_pred cHHHHHh--CCCCCCCCEEEECCCcchHHHHHHHcc-CC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCE-E
Confidence 3445555 666664 9999999999999999976 44 6999999998766655433321 1000 0124789 9
Q ss_pred EEcCCCCCCc-CCCCccEEEecCcCcC
Q psy425 215 VEWDARKPYK-KNGPYDVIHFGSGVKH 240 (254)
Q Consensus 215 ~~~d~~~~~~-~~~~fD~I~~~~~~~~ 240 (254)
+++|..+... ...+||+|++..+|++
T Consensus 137 ~~~d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 137 IHGDALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp EES-CCCHCCCHSS--SEEEE--S---
T ss_pred EcCCHHHHHhhcCCCCCEEEECCCCCC
Confidence 9999985433 3567999999999864
No 249
>PHA01634 hypothetical protein
Probab=97.03 E-value=0.0051 Score=46.31 Aligned_cols=47 Identities=9% Similarity=-0.041 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS 201 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 201 (254)
.+.+|+|||++.|..++.++.++.. +|+++|.++...+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhhh
Confidence 6899999999999999999988766 8999999999999999988774
No 250
>PRK11524 putative methyltransferase; Provisional
Probab=96.84 E-value=0.0057 Score=52.99 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
-.+|+.|||..+|||..+.+..++ +. +.+|+|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l-gR--~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS-GR--KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc-CC--CEEEEeCCHHHHHHHHHHHHh
Confidence 468999999999999988875555 45 699999999999999999865
No 251
>KOG4589|consensus
Probab=96.73 E-value=0.0026 Score=51.09 Aligned_cols=37 Identities=35% Similarity=0.426 Sum_probs=34.7
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCC
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHI 187 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s 187 (254)
+.|+++|||+||..|.++....++.+++|.|.|||+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 5789999999999999999999999999999999984
No 252
>KOG1501|consensus
Probab=96.73 E-value=0.0031 Score=56.80 Aligned_cols=55 Identities=29% Similarity=0.349 Sum_probs=47.1
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW 217 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~ 217 (254)
.|||||+|||.++...++.++. .|+++|.-.-|.+.|++...++| -.++|+ ++.-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng----~SdkI~-vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNG----MSDKIN-VINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCC----Ccccee-eecc
Confidence 6899999999999998888755 69999999999999999999886 456676 6554
No 253
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.70 E-value=0.0012 Score=60.42 Aligned_cols=84 Identities=17% Similarity=0.275 Sum_probs=49.8
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEE-----eCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAV-----DHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gv-----D~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
..+||+|||+|.++..|..+. |+.+ |..+..++.|.++ +.+.+- -+.+.-..+++ .+.|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleR---------Gvpa~~-~~~~s~rLPfp-~~~f 182 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALER---------GVPAMI-GVLGSQRLPFP-SNAF 182 (506)
T ss_pred EEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhc---------Ccchhh-hhhccccccCC-ccch
Confidence 378999999999999888773 4433 4555566666555 222222 12233334444 4569
Q ss_pred cEEEecCcCc-CchH---HHHHHHHhhcC
Q psy425 230 DVIHFGSGVK-HIPI---EVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~-~~~~---~l~~~lr~lk~ 254 (254)
|+|.++-++- ..+. .+.+.-|+||+
T Consensus 183 DmvHcsrc~i~W~~~~g~~l~evdRvLRp 211 (506)
T PF03141_consen 183 DMVHCSRCLIPWHPNDGFLLFEVDRVLRP 211 (506)
T ss_pred hhhhcccccccchhcccceeehhhhhhcc
Confidence 9998887762 1111 25555566653
No 254
>KOG1331|consensus
Probab=96.67 E-value=0.0017 Score=55.38 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=64.5
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
...+..++|+|||.|-.+.. .+...++|.|++...+..+++. +.+ . +..+|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~---------~~~--~-~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS---------GGD--N-VCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC---------CCc--e-eehhhhhcCCCCCCccc
Confidence 34589999999999976332 1334699999999988887654 111 5 77889887666777899
Q ss_pred EEEecCcCcCchH------HHHHHHHhhcC
Q psy425 231 VIHFGSGVKHIPI------EVSKLCRSQKK 254 (254)
Q Consensus 231 ~I~~~~~~~~~~~------~l~~~lr~lk~ 254 (254)
.+++.++++|+.. .+.+.+|++|+
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrp 135 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRP 135 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 9999999998864 35666666664
No 255
>KOG1709|consensus
Probab=96.66 E-value=0.025 Score=46.56 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC--CcCCCCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP--YKKNGPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~--~~~~~~f 229 (254)
.+|.+||+||-|-|.....+-+. .+ .+-+-||.+|+.++..++.... ...||. ++.+-.++. ..+++.|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~------ek~nVi-il~g~WeDvl~~L~d~~F 170 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR------EKENVI-ILEGRWEDVLNTLPDKHF 170 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc------cccceE-EEecchHhhhccccccCc
Confidence 68999999999999988876655 33 3667899999999888876543 346787 777755422 1234559
Q ss_pred cEEEecCc
Q psy425 230 DVIHFGSG 237 (254)
Q Consensus 230 D~I~~~~~ 237 (254)
|-|+-..-
T Consensus 171 DGI~yDTy 178 (271)
T KOG1709|consen 171 DGIYYDTY 178 (271)
T ss_pred ceeEeech
Confidence 99987654
No 256
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.65 E-value=0.011 Score=55.22 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD---KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE 216 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 216 (254)
...+++.+ .+.+..+|+|..||+|.+....+..++. ...++|.|+++.....|+-|+--++. ..++. ..+
T Consensus 175 ~~liv~~l--~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi----~~~~~-i~~ 247 (489)
T COG0286 175 SELIVELL--DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI----EGDAN-IRH 247 (489)
T ss_pred HHHHHHHc--CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC----Ccccc-ccc
Confidence 45555555 4467789999999999988887777643 25799999999999999999887641 11445 556
Q ss_pred cCCC-CCCc----CCCCccEEEecCcC
Q psy425 217 WDAR-KPYK----KNGPYDVIHFGSGV 238 (254)
Q Consensus 217 ~d~~-~~~~----~~~~fD~I~~~~~~ 238 (254)
+|-. .+.. ....||.|+++..+
T Consensus 248 ~dtl~~~~~~~~~~~~~~D~viaNPPf 274 (489)
T COG0286 248 GDTLSNPKHDDKDDKGKFDFVIANPPF 274 (489)
T ss_pred cccccCCcccccCCccceeEEEeCCCC
Confidence 6554 2222 23569999998766
No 257
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.61 E-value=0.014 Score=49.76 Aligned_cols=96 Identities=19% Similarity=0.078 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCC-CCCEEEEEcCCC--ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE
Q psy425 140 QAACLQHLSDKLL-PGANVLDLGFGS--GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE 216 (254)
Q Consensus 140 ~~~~l~~l~~~~~-~~~~VLDiG~G~--G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 216 (254)
..+.+..+. -. .=..+||||||- -..+..+|+...+.++|+-+|.+|-.+..++..+..+. ..... ++.
T Consensus 56 l~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-----~g~t~-~v~ 127 (267)
T PF04672_consen 56 LRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-----RGRTA-YVQ 127 (267)
T ss_dssp HHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-----TSEEE-EEE
T ss_pred HHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-----CccEE-EEe
Confidence 444455552 22 236899999994 44667788888888999999999999999999887641 12377 999
Q ss_pred cCCCCCC-----------cCCCCccEEEecCcCcCchH
Q psy425 217 WDARKPY-----------KKNGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 217 ~d~~~~~-----------~~~~~fD~I~~~~~~~~~~~ 243 (254)
+|+.++. .+....=.|++.++++++++
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D 165 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD 165 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC
Confidence 9998431 11112226788888888865
No 258
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.59 E-value=0.0064 Score=52.45 Aligned_cols=71 Identities=18% Similarity=0.093 Sum_probs=51.3
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCccEEE
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPYDVIH 233 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~fD~I~ 233 (254)
+|+|+.||.|.++..+.+.+.. .+.++|+++.+++..+.|... . +..+|+...... ...+|+|+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~-----------~-~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN-----------K-LIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC-----------C-CccCccccCchhhcCCCCCEEE
Confidence 6899999999999888776433 689999999999888777532 1 345666533221 24599999
Q ss_pred ecCcCcC
Q psy425 234 FGSGVKH 240 (254)
Q Consensus 234 ~~~~~~~ 240 (254)
.+..+..
T Consensus 68 ~gpPCq~ 74 (275)
T cd00315 68 GGFPCQP 74 (275)
T ss_pred eCCCChh
Confidence 9886643
No 259
>PRK13699 putative methylase; Provisional
Probab=96.44 E-value=0.015 Score=48.67 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=40.4
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
-.+|+.|||..||||....+..+. +. +.+|+|++++..+.+.+++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~r--~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-GR--RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-CC--CEEEEecCHHHHHHHHHHHHH
Confidence 468999999999999988876555 44 599999999999999999876
No 260
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.31 E-value=0.019 Score=50.82 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=63.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH--HHhhCCCcccCCCeeEEEEcCCCCCCc-CCC
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK--LKISYPKLYKLYKIMDVVEWDARKPYK-KNG 227 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~--~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~ 227 (254)
++.-.+||-+|-|-|.....+.+. ..-.+++-+|++|+|++.++++ +...+...+..++++ ++..|+..-.. ...
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~-Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVT-VVNDDAFQWLRTAAD 364 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeE-EEeccHHHHHHhhcc
Confidence 345579999999999998887766 3356899999999999999944 444333334567899 99999874222 234
Q ss_pred CccEEEecCcC
Q psy425 228 PYDVIHFGSGV 238 (254)
Q Consensus 228 ~fD~I~~~~~~ 238 (254)
.||.|++...=
T Consensus 365 ~fD~vIVDl~D 375 (508)
T COG4262 365 MFDVVIVDLPD 375 (508)
T ss_pred cccEEEEeCCC
Confidence 69999987543
No 261
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.28 E-value=0.011 Score=48.60 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=33.6
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
-.+|+.|||..||||..+.+..++ +. +.+|+|++++.++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l-~R--~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEEL-GR--RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHc-CC--eEEEEeCCHHHHHHhcC
Confidence 568999999999999988875555 45 69999999999999875
No 262
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.046 Score=48.45 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc---C----CCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV---G----DKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~---~----~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
..-.++|+|+|+|.++..+.+.. . ...++.-||.|++..+.=+++++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 45689999999999988776654 1 235799999999998887777766
No 263
>KOG3178|consensus
Probab=96.03 E-value=0.023 Score=49.98 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEEE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIH 233 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I~ 233 (254)
-...+|+|.|.|..+..+...+ + ++-+++.+...+..++.++. +.|+ .+.+|+.+..| . -|+|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p--~ik~infdlp~v~~~a~~~~---------~gV~-~v~gdmfq~~P-~--~daI~ 241 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-P--HIKGINFDLPFVLAAAPYLA---------PGVE-HVAGDMFQDTP-K--GDAIW 241 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-C--CCceeecCHHHHHhhhhhhc---------CCcc-eecccccccCC-C--cCeEE
Confidence 4789999999999998888865 4 49999999998888877753 2477 88899986533 3 37999
Q ss_pred ecCcCcCchHH-HHHHHHh
Q psy425 234 FGSGVKHIPIE-VSKLCRS 251 (254)
Q Consensus 234 ~~~~~~~~~~~-l~~~lr~ 251 (254)
+--+++|.++. ..+.|+.
T Consensus 242 mkWiLhdwtDedcvkiLkn 260 (342)
T KOG3178|consen 242 MKWILHDWTDEDCVKILKN 260 (342)
T ss_pred EEeecccCChHHHHHHHHH
Confidence 99999988774 4555544
No 264
>KOG2793|consensus
Probab=95.95 E-value=0.05 Score=46.00 Aligned_cols=96 Identities=19% Similarity=0.121 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCccc-CCCeeEEEE---cCCCCCCcCCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYK-LYKIMDVVE---WDARKPYKKNGP 228 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~-~~~v~~~~~---~d~~~~~~~~~~ 228 (254)
...+|||+|+|+|..++.+|...+. .|+..|.. ..+.....+...++..... ...+. +.. ++..........
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~--~v~ltD~~-~~~~~L~~~~~~~~~~l~~~g~~v~-v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGA--EVVLTDLP-KVVENLKFNRDKNNIALNQLGGSVI-VAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcc--eeccCCch-hhHHHHHHhhhhhhhhhhhcCCcee-EEEEecCCcccHhhccCC
Confidence 3557999999999888888876544 67777764 4444444443322100001 11333 222 222211111223
Q ss_pred -ccEEEecCcC--cCchHHHHHHHHhh
Q psy425 229 -YDVIHFGSGV--KHIPIEVSKLCRSQ 252 (254)
Q Consensus 229 -fD~I~~~~~~--~~~~~~l~~~lr~l 252 (254)
||+|++..++ ++.++.+...++.+
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv~tla~l 188 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLVKTLAFL 188 (248)
T ss_pred cccEEEEeeeeecCCcchhHHHHHHHH
Confidence 8999999988 56666666666543
No 265
>KOG3115|consensus
Probab=95.87 E-value=0.013 Score=47.79 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhC--CCcccCCCeeEEEEcCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISY--PKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~v~~~~~~d~~ 220 (254)
..-.+.|||||-|.+...|+..+ |..-+.|.||--..-++.+++++... +..-...|+. ++..+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~-vlr~nam 127 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNIS-VLRTNAM 127 (249)
T ss_pred ccceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccce-eeeccch
Confidence 45679999999999999999997 56689999999999999988877642 0011245677 7777765
No 266
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.81 E-value=0.086 Score=45.23 Aligned_cols=111 Identities=17% Similarity=0.115 Sum_probs=70.6
Q ss_pred HHHHHHHhhhcCC------CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh---hC--------
Q psy425 140 QAACLQHLSDKLL------PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI---SY-------- 202 (254)
Q Consensus 140 ~~~~l~~l~~~~~------~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~---~~-------- 202 (254)
...+++.|....+ ...+||--|||.|.++..+|.++- .+.|.|.|-.|+-..+=.+.. .+
T Consensus 37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 4555555543222 346999999999999999999854 599999999997555443331 00
Q ss_pred ------------------CC------cccCCCeeEEEEcCCCCCCcCC---CCccEEEecCcC---cCchHHHHHHHHhh
Q psy425 203 ------------------PK------LYKLYKIMDVVEWDARKPYKKN---GPYDVIHFGSGV---KHIPIEVSKLCRSQ 252 (254)
Q Consensus 203 ------------------~~------~~~~~~v~~~~~~d~~~~~~~~---~~fD~I~~~~~~---~~~~~~l~~~lr~l 252 (254)
++ .....++. ...||+.+..... +.||+|+...-+ +++-+-+....+.|
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~s-m~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lL 192 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLS-MCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLL 192 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCcee-EecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHh
Confidence 00 01123566 7778887544444 679999877544 45555555555566
Q ss_pred cC
Q psy425 253 KK 254 (254)
Q Consensus 253 k~ 254 (254)
||
T Consensus 193 kp 194 (270)
T PF07942_consen 193 KP 194 (270)
T ss_pred cc
Confidence 54
No 267
>KOG1596|consensus
Probab=95.71 E-value=0.021 Score=47.79 Aligned_cols=79 Identities=33% Similarity=0.374 Sum_probs=53.3
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---CC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---KN 226 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---~~ 226 (254)
+++||.+||=+|+++|..-...+...++.+-|+++|.++..=......++ .-.||. .+.-|+..+.. .-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-------kRtNii-PIiEDArhP~KYRmlV 224 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-------KRTNII-PIIEDARHPAKYRMLV 224 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-------ccCCce-eeeccCCCchheeeee
Confidence 67899999999999999999999999999999999999754222211111 124565 66666654321 11
Q ss_pred CCccEEEecC
Q psy425 227 GPYDVIHFGS 236 (254)
Q Consensus 227 ~~fD~I~~~~ 236 (254)
.-+|+||+.-
T Consensus 225 gmVDvIFaDv 234 (317)
T KOG1596|consen 225 GMVDVIFADV 234 (317)
T ss_pred eeEEEEeccC
Confidence 2356665543
No 268
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.69 E-value=0.27 Score=41.34 Aligned_cols=77 Identities=27% Similarity=0.361 Sum_probs=46.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~f 229 (254)
-.|++||=+|=. =..++.+|.. +...+|+.+|+++.+++..++.+++.| . +|+ .++.|+..++++ .++|
T Consensus 43 L~gk~il~lGDD-DLtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~g-----l-~i~-~~~~DlR~~LP~~~~~~f 113 (243)
T PF01861_consen 43 LEGKRILFLGDD-DLTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEG-----L-PIE-AVHYDLRDPLPEELRGKF 113 (243)
T ss_dssp STT-EEEEES-T-T-HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT--------EE-EE---TTS---TTTSS-B
T ss_pred ccCCEEEEEcCC-cHHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcC-----C-ceE-EEEecccccCCHHHhcCC
Confidence 368999999833 2344555543 344689999999999999999998863 3 499 999999987765 4789
Q ss_pred cEEEecCc
Q psy425 230 DVIHFGSG 237 (254)
Q Consensus 230 D~I~~~~~ 237 (254)
|+++....
T Consensus 114 D~f~TDPP 121 (243)
T PF01861_consen 114 DVFFTDPP 121 (243)
T ss_dssp SEEEE---
T ss_pred CEEEeCCC
Confidence 99998753
No 269
>KOG2671|consensus
Probab=95.61 E-value=0.015 Score=50.96 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=62.8
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHH-------HHHHHHHhhCCCcccCCC-ee
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN-------LFMTKLKISYPKLYKLYK-IM 212 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~-------~a~~~~~~~~~~~~~~~~-v~ 212 (254)
..+...++ .+.+|+.|+|--.|||.+....|+.++ .|+|.||+-.++. ..+.|++++| ..+. +.
T Consensus 197 Sli~AN~A-mv~pGdivyDPFVGTGslLvsaa~FGa---~viGtDIDyr~vragrg~~~si~aNFkQYg----~~~~fld 268 (421)
T KOG2671|consen 197 SLIMANQA-MVKPGDIVYDPFVGTGSLLVSAAHFGA---YVIGTDIDYRTVRAGRGEDESIKANFKQYG----SSSQFLD 268 (421)
T ss_pred HHHHhhhh-ccCCCCEEecCccccCceeeehhhhcc---eeeccccchheeecccCCCcchhHhHHHhC----Ccchhhh
Confidence 33344332 678999999999999999888776653 5999999988876 2356777764 1222 55
Q ss_pred EEEEcCCCCC-CcCCCCccEEEecC
Q psy425 213 DVVEWDARKP-YKKNGPYDVIHFGS 236 (254)
Q Consensus 213 ~~~~~d~~~~-~~~~~~fD~I~~~~ 236 (254)
++.+|...+ +..+..||.|++..
T Consensus 269 -vl~~D~sn~~~rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 269 -VLTADFSNPPLRSNLKFDAIVCDP 292 (421)
T ss_pred -eeeecccCcchhhcceeeEEEeCC
Confidence 888998743 33456799999964
No 270
>KOG2198|consensus
Probab=95.53 E-value=0.085 Score=46.83 Aligned_cols=93 Identities=23% Similarity=0.259 Sum_probs=63.2
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD---KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE 216 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 216 (254)
...|+--+.-.++|+++|||+++..|.-|+.+.+.+.+ .|.|++-|.++..+......+... ...++. +..
T Consensus 142 avSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-----~~~~~~-v~~ 215 (375)
T KOG2198|consen 142 AVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-----PSPNLL-VTN 215 (375)
T ss_pred hhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-----CCccee-eec
Confidence 34444333337899999999999999999888887642 358999999999988888877542 344554 555
Q ss_pred cCCCCCC---------cCCCCccEEEecCcC
Q psy425 217 WDARKPY---------KKNGPYDVIHFGSGV 238 (254)
Q Consensus 217 ~d~~~~~---------~~~~~fD~I~~~~~~ 238 (254)
.|+.... .....||.|++...+
T Consensus 216 ~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPC 246 (375)
T KOG2198|consen 216 HDASLFPNIYLKDGNDKEQLKFDRVLVDVPC 246 (375)
T ss_pred ccceeccccccccCchhhhhhcceeEEeccc
Confidence 5554111 112359999876443
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.46 E-value=0.044 Score=49.40 Aligned_cols=80 Identities=25% Similarity=0.252 Sum_probs=56.2
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCC-CeeEEEEcCCCCCC-cCCCCc
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY-KIMDVVEWDARKPY-KKNGPY 229 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~-~v~~~~~~d~~~~~-~~~~~f 229 (254)
..+-+|||.=+|||.=++..+.......+|+.-|+|+++++..++|++.|+ ... .++ +.+.|+.... .....|
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~----~~~~~~~-v~~~DAn~ll~~~~~~f 122 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNG----LEDERIE-VSNMDANVLLYSRQERF 122 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----SGCCEE-EEES-HHHHHCHSTT-E
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcc----ccCceEE-EehhhHHHHhhhccccC
Confidence 345699999999999998888875433489999999999999999999875 233 588 8888987432 235569
Q ss_pred cEEEecC
Q psy425 230 DVIHFGS 236 (254)
Q Consensus 230 D~I~~~~ 236 (254)
|+|=+..
T Consensus 123 D~IDlDP 129 (377)
T PF02005_consen 123 DVIDLDP 129 (377)
T ss_dssp EEEEE--
T ss_pred CEEEeCC
Confidence 9997653
No 272
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.25 E-value=0.035 Score=45.76 Aligned_cols=65 Identities=20% Similarity=0.246 Sum_probs=45.1
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---cCCCCccE
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---KKNGPYDV 231 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---~~~~~fD~ 231 (254)
-++|||||=+....+.-...+ .|+.||+++. .-. +.+.|+.+.+ .+.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns~--------------------~~~-I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNSQ--------------------HPG-ILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccCce----eeEEeecCCC--------------------CCC-ceeeccccCCCCCCcccceeE
Confidence 599999998776544433332 4999999852 122 5566766422 23567999
Q ss_pred EEecCcCcCchHH
Q psy425 232 IHFGSGVKHIPIE 244 (254)
Q Consensus 232 I~~~~~~~~~~~~ 244 (254)
|.++.++..+|.+
T Consensus 108 Is~SLVLNfVP~p 120 (219)
T PF11968_consen 108 ISLSLVLNFVPDP 120 (219)
T ss_pred EEEEEEEeeCCCH
Confidence 9999999988865
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.14 E-value=0.12 Score=45.80 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=55.8
Q ss_pred cCCCCCEEEEEcCC-CChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc-CCCCCCcCCC
Q psy425 150 KLLPGANVLDLGFG-SGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW-DARKPYKKNG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~-d~~~~~~~~~ 227 (254)
.++||++|+=+|+| .|.++..+|+..+ .+|+++|.+++-.+.|++.-.. . ++.. |......-.+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGAd---------~---~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGAD---------H---VINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCCc---------E---EEEcCCchhhHHhHh
Confidence 67899999999998 2456777787665 4899999999999888876222 1 2332 2211111112
Q ss_pred CccEEEecCcCcCchHHHHHHHHhhc
Q psy425 228 PYDVIHFGSGVKHIPIEVSKLCRSQK 253 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~~l~~~lr~lk 253 (254)
.||+|+.... +..+...++.||
T Consensus 229 ~~d~ii~tv~----~~~~~~~l~~l~ 250 (339)
T COG1064 229 IADAIIDTVG----PATLEPSLKALR 250 (339)
T ss_pred hCcEEEECCC----hhhHHHHHHHHh
Confidence 3999998876 333445555554
No 274
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=95.12 E-value=0.07 Score=43.33 Aligned_cols=40 Identities=38% Similarity=0.498 Sum_probs=35.9
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHH
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~ 189 (254)
.+++|.+|+|+=.|.|++|..++...+++|.|+++-..+.
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 6889999999999999999999999999999999765543
No 275
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.11 E-value=0.11 Score=44.09 Aligned_cols=84 Identities=17% Similarity=0.072 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCC-------CEEEEEeCCHHHHHHHHHHHHhhCCC-cccCCCeeEEEEcCCCCCCcC
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDK-------GHVTAVDHIPQLINLFMTKLKISYPK-LYKLYKIMDVVEWDARKPYKK 225 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~-------~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~v~~~~~~d~~~~~~~ 225 (254)
.-+|+|+|+|+|.++..+.+.+... .+++-||.|+.+.+.-++++...... .....+|. + ..++... +
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~-w-~~~l~~~-p- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIR-W-LDDLEEV-P- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEE-E-ESSGGCS---
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccc-h-hhhhhcc-c-
Confidence 3699999999999999988876532 47999999999988888887652000 00122454 4 2333221 1
Q ss_pred CCCccEEEecCcCcCchH
Q psy425 226 NGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 226 ~~~fD~I~~~~~~~~~~~ 243 (254)
..-+|+++..+..+|-
T Consensus 95 --~~~~iiaNE~~DAlP~ 110 (252)
T PF02636_consen 95 --FPGFIIANELFDALPV 110 (252)
T ss_dssp --CCEEEEEESSGGGS--
T ss_pred --CCEEEEEeeehhcCce
Confidence 2457777777766663
No 276
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.02 E-value=0.11 Score=43.42 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc-CCCC---CC-cCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW-DARK---PY-KKNG 227 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~-d~~~---~~-~~~~ 227 (254)
++-++||||.|.-.+=-.+..+- -..+.+|.|+++..++.|+.++..|. .....|+ ++.. |-.. +. -.++
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~---~l~~~I~-lr~qk~~~~if~giig~nE 152 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANP---GLERAIR-LRRQKDSDAIFNGIIGKNE 152 (292)
T ss_pred CceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCc---chhhhee-EEeccCccccccccccccc
Confidence 56689999998765533332221 13479999999999999999988762 0223455 5433 2221 11 2256
Q ss_pred CccEEEecCcCcCchH
Q psy425 228 PYDVIHFGSGVKHIPI 243 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~ 243 (254)
.||+++|+..|+.-.+
T Consensus 153 ~yd~tlCNPPFh~s~~ 168 (292)
T COG3129 153 RYDATLCNPPFHDSAA 168 (292)
T ss_pred eeeeEecCCCcchhHH
Confidence 7999999999875544
No 277
>KOG3987|consensus
Probab=95.02 E-value=0.0038 Score=50.95 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
.+.++||+|+|.|.++..++..+. +|++.|.|..|....++.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc
Confidence 357999999999999999998875 499999999997766553
No 278
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.88 E-value=0.085 Score=43.35 Aligned_cols=62 Identities=19% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV---GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK 221 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~ 221 (254)
+.+.|+|+|.-.|..+.++|.++ +..++|+|||++...... +..+.+. ..++|+ +++||..+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp----~~~rI~-~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHP----MSPRIT-FIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG--------TTEE-EEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhcc----ccCceE-EEECCCCC
Confidence 56899999999999988887654 466899999996543322 1122211 236899 99999874
No 279
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.68 E-value=0.088 Score=40.56 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=38.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--cCCCCccEEEecCcC
Q psy425 180 HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--KKNGPYDVIHFGSGV 238 (254)
Q Consensus 180 ~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--~~~~~fD~I~~~~~~ 238 (254)
+|+|+|+-+++++.+++++++.+ ...+++ +++.+-+... .+.+++|+++.|.+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~----~~~~v~-li~~sHe~l~~~i~~~~v~~~iFNLGY 56 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG----LEDRVT-LILDSHENLDEYIPEGPVDAAIFNLGY 56 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-----GSGEE-EEES-GGGGGGT--S--EEEEEEEESB
T ss_pred CEEEEECHHHHHHHHHHHHHhcC----CCCcEE-EEECCHHHHHhhCccCCcCEEEEECCc
Confidence 59999999999999999999864 345798 8887765322 122469999999766
No 280
>KOG2352|consensus
Probab=94.52 E-value=0.19 Score=46.23 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=63.7
Q ss_pred cCCCCC-EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCC
Q psy425 150 KLLPGA-NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGP 228 (254)
Q Consensus 150 ~~~~~~-~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~ 228 (254)
.+.+-. ++|-+|||.-.++..+-+-+.. .++.+|+|+-.++........ ...... +...|+.....++++
T Consensus 44 ~~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~------~~~~~~-~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 44 YLSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAK------ERPEMQ-MVEMDMDQLVFEDES 114 (482)
T ss_pred hhchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhcccc------CCcceE-EEEecchhccCCCcc
Confidence 455666 9999999999888776655433 599999999999888766433 234677 889999877777788
Q ss_pred ccEEEecCcCcC
Q psy425 229 YDVIHFGSGVKH 240 (254)
Q Consensus 229 fD~I~~~~~~~~ 240 (254)
||+|+--+.+.+
T Consensus 115 FdiVIdkGtlDa 126 (482)
T KOG2352|consen 115 FDIVIDKGTLDA 126 (482)
T ss_pred eeEEEecCcccc
Confidence 999999888743
No 281
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.09 E-value=0.57 Score=41.79 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=59.2
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEc-CCC-C--CCc
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEW-DAR-K--PYK 224 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~-d~~-~--~~~ 224 (254)
...++.+|+=+|||+ |.++..+++..+. .+|+.+|.+++.++.|++.... +.+. .... +.. . ...
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~--------~~~~-~~~~~~~~~~~~~~t 234 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGA--------DVVV-NPSEDDAGAEILELT 234 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCC--------eEee-cCccccHHHHHHHHh
Confidence 344556999999997 8888888888754 5899999999999999885322 1111 1111 110 0 011
Q ss_pred CCCCccEEEecCcCcCchHHHHHHHHhhcC
Q psy425 225 KNGPYDVIHFGSGVKHIPIEVSKLCRSQKK 254 (254)
Q Consensus 225 ~~~~fD~I~~~~~~~~~~~~l~~~lr~lk~ 254 (254)
....+|+++-... .+..+.+.++.+|+
T Consensus 235 ~g~g~D~vie~~G---~~~~~~~ai~~~r~ 261 (350)
T COG1063 235 GGRGADVVIEAVG---SPPALDQALEALRP 261 (350)
T ss_pred CCCCCCEEEECCC---CHHHHHHHHHHhcC
Confidence 1224899987766 45566667666654
No 282
>KOG2651|consensus
Probab=93.96 E-value=0.2 Score=44.78 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+-+.|+|+|+|.|+++..++-..+- .|.+||-|....+.|++
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l--sV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL--SVKAIEGSQRLVERAQR 194 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc--eEEEeccchHHHHHHHH
Confidence 45679999999999999999877654 79999999877777654
No 283
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.65 E-value=0.19 Score=42.87 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCCChHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCC---C-------------c-c------
Q psy425 151 LLPGANVLDLGFGSGFMS-CCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP---K-------------L-Y------ 206 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t-~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~---~-------------~-~------ 206 (254)
-..|.++||||||+-..- +.+++.+. +++..|..+.-++..++=++..+. . . .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 346789999999986553 33334432 699999999877666554433210 0 0 0
Q ss_pred cCCCeeEEEEcCCCCCCcCC------CCccEEEecCcCc
Q psy425 207 KLYKIMDVVEWDARKPYKKN------GPYDVIHFGSGVK 239 (254)
Q Consensus 207 ~~~~v~~~~~~d~~~~~~~~------~~fD~I~~~~~~~ 239 (254)
.-..|+.++.+|+....+-. .+||+|++..+++
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE 169 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLE 169 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHH
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHH
Confidence 00124447889998543222 2499999999884
No 284
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.61 E-value=0.062 Score=39.31 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHI 187 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s 187 (254)
+....+|||||+|.+...|...+-+ -.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~---G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYP---GWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCC---ccccccc
Confidence 4568999999999999888877644 6888875
No 285
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.36 Score=42.99 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCccEE
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYDVI 232 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD~I 232 (254)
..+|+|.-||||.=++..+.-.+.. +|+.-|++|++++.+++|+..|. ..+.. ..+.|+..... ....||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~-----~~~~~-v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNS-----GEDAE-VINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcC-----cccce-eecchHHHHHHhcCCCccEE
Confidence 7899999999999998888776543 89999999999999999999862 33455 56677753222 23568988
Q ss_pred Eec
Q psy425 233 HFG 235 (254)
Q Consensus 233 ~~~ 235 (254)
=+.
T Consensus 126 DiD 128 (380)
T COG1867 126 DID 128 (380)
T ss_pred ecC
Confidence 554
No 286
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.41 E-value=0.088 Score=45.91 Aligned_cols=69 Identities=20% Similarity=0.116 Sum_probs=47.6
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CC-CccEEE
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NG-PYDVIH 233 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~-~fD~I~ 233 (254)
+++|+.||.|.++..+.+.+-. .+.++|+++.+.+.-+.|.. . ...+|+...... -. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~~------------~-~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANFP------------E-VICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHHT------------E-EEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhccc------------c-cccccccccccccccccceEEE
Confidence 6899999999999998877533 58999999998777777642 5 788888743211 01 389998
Q ss_pred ecCcCc
Q psy425 234 FGSGVK 239 (254)
Q Consensus 234 ~~~~~~ 239 (254)
.+..+.
T Consensus 67 ggpPCQ 72 (335)
T PF00145_consen 67 GGPPCQ 72 (335)
T ss_dssp EE---T
T ss_pred eccCCc
Confidence 887663
No 287
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.34 E-value=0.76 Score=43.15 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 152 LPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 152 ~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.++.+|+=+|+|. |..+...|+..|. +|+++|.+++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 4789999999997 7788888888776 79999999999888776
No 288
>KOG0024|consensus
Probab=93.10 E-value=0.22 Score=43.57 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=41.4
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+++|.+||-+|+|. |..+...|+.++. .+|+.+|+++..++.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH
Confidence 678999999999996 8888888888764 589999999999999998
No 289
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.85 E-value=0.3 Score=42.99 Aligned_cols=69 Identities=16% Similarity=0.020 Sum_probs=47.6
Q ss_pred EEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-CCCCccEEEec
Q psy425 157 VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-KNGPYDVIHFG 235 (254)
Q Consensus 157 VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-~~~~fD~I~~~ 235 (254)
|+|+.||.|.++.-+.+.+-. .+.++|+++.+++.-+.|.. . . +..+|+..... ....+|+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~~----------~-~-~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANFG----------N-K-VPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhCC----------C-C-CCccChhhhhhhhCCCcCEEEec
Confidence 689999999999988766422 47789999998887777642 2 3 45567664221 12247999887
Q ss_pred CcCc
Q psy425 236 SGVK 239 (254)
Q Consensus 236 ~~~~ 239 (254)
..+.
T Consensus 67 ~PCq 70 (315)
T TIGR00675 67 FPCQ 70 (315)
T ss_pred CCCc
Confidence 6653
No 290
>KOG2078|consensus
Probab=92.51 E-value=0.095 Score=47.35 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=52.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
-.++|..|-|+.||.|-+++.++... .+|++-|.+++++++.+.|+..+. ....+++ ....|+.
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNk---v~~~~ie-i~Nmda~ 309 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNK---VDPSAIE-IFNMDAK 309 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccc---cchhhee-eecccHH
Confidence 35689999999999999999988774 389999999999999999988763 1223477 7777765
No 291
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=92.41 E-value=0.61 Score=36.08 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=28.0
Q ss_pred EEcCCCC--hHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHH--HHhh
Q psy425 159 DLGFGSG--FMSCCMA-RMVGDKGHVTAVDHIPQLINLFMTK--LKIS 201 (254)
Q Consensus 159 DiG~G~G--~~t~~la-~~~~~~~~v~gvD~s~~~l~~a~~~--~~~~ 201 (254)
|||+..| ..+..+. +..++.++|+++|.+|..++..+++ +..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 5555443 3455677999999999999999998 5443
No 292
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.92 E-value=2.2 Score=35.22 Aligned_cols=96 Identities=10% Similarity=0.010 Sum_probs=60.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCCh--HHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEE
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGF--MSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVE 216 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~--~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~ 216 (254)
.+.++..|+.. ..-..++++.|+.|. .++.|+-.. ...|++++|-.+++.+...++.+...+ ..+.++ |+.
T Consensus 29 ~aEfISAlAAG-~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~----~~~~vE-fvv 102 (218)
T PF07279_consen 29 VAEFISALAAG-WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAG----LSDVVE-FVV 102 (218)
T ss_pred HHHHHHHHhcc-ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcc----ccccce-EEe
Confidence 56667777422 234678899766443 344443332 235689999999998888888887643 234468 999
Q ss_pred cCCC-CCCcCCCCccEEEecCcCcCc
Q psy425 217 WDAR-KPYKKNGPYDVIHFGSGVKHI 241 (254)
Q Consensus 217 ~d~~-~~~~~~~~fD~I~~~~~~~~~ 241 (254)
++.. +..+.....|++++..-..+.
T Consensus 103 g~~~e~~~~~~~~iDF~vVDc~~~d~ 128 (218)
T PF07279_consen 103 GEAPEEVMPGLKGIDFVVVDCKREDF 128 (218)
T ss_pred cCCHHHHHhhccCCCEEEEeCCchhH
Confidence 8853 223333458999988764433
No 293
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.85 E-value=0.65 Score=41.09 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CC-Ccc
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NG-PYD 230 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~-~fD 230 (254)
..+++|+.||.|.+..-+...+-. -+.++|+++.+++.-+.|... .. +...|+...... .. .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~~----------~~-~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFPH----------GD-IILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCCC----------Cc-eeechHhhcChhhccccCCC
Confidence 357999999999999888776523 589999999998877777542 33 566776532211 11 589
Q ss_pred EEEecCcCcCch
Q psy425 231 VIHFGSGVKHIP 242 (254)
Q Consensus 231 ~I~~~~~~~~~~ 242 (254)
+|+.+..+..+.
T Consensus 70 vligGpPCQ~FS 81 (328)
T COG0270 70 VLIGGPPCQDFS 81 (328)
T ss_pred EEEeCCCCcchh
Confidence 999888775443
No 294
>PRK10458 DNA cytosine methylase; Provisional
Probab=91.81 E-value=1.4 Score=41.05 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHH
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKL 198 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~ 198 (254)
.-+++|+.||.|.++..+-..+.. .|.++|+++.+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHc
Confidence 459999999999999988666433 5789999998877766664
No 295
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.52 E-value=2.1 Score=32.31 Aligned_cols=80 Identities=16% Similarity=0.081 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCCh-HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CCCcc
Q psy425 153 PGANVLDLGFGSGF-MSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~-~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~~fD 230 (254)
...+|+|+|-|.=. .+..|.+++ - .|+++|+++. +.. ..+. ++.-|+..+... -...|
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~--dV~~tDi~~~-------~a~---------~g~~-~v~DDif~P~l~iY~~a~ 72 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-F--DVIATDINPR-------KAP---------EGVN-FVVDDIFNPNLEIYEGAD 72 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S--------------------STT-EE---SSS--HHHHTTEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-C--cEEEEECccc-------ccc---------cCcc-eeeecccCCCHHHhcCCc
Confidence 44599999998644 445555553 3 6999999987 211 2566 888898865433 22479
Q ss_pred EEEecCcCcCchHHHHHHHHhh
Q psy425 231 VIHFGSGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 231 ~I~~~~~~~~~~~~l~~~lr~l 252 (254)
+|++.-.-.++..++.+.-+.+
T Consensus 73 lIYSiRPP~El~~~il~lA~~v 94 (127)
T PF03686_consen 73 LIYSIRPPPELQPPILELAKKV 94 (127)
T ss_dssp EEEEES--TTSHHHHHHHHHHH
T ss_pred EEEEeCCChHHhHHHHHHHHHh
Confidence 9999988888888887766543
No 296
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.06 E-value=0.67 Score=33.87 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=43.3
Q ss_pred CCCChHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cCCCCccEEEecC
Q psy425 162 FGSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KKNGPYDVIHFGS 236 (254)
Q Consensus 162 ~G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~~~~fD~I~~~~ 236 (254)
||.|.++..+++.+...+ .|+.+|.+++.++.+++. .+. ++.+|..+.. ..-...|.|++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~-~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVE-VIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSE-EEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccc-cccccchhhhHHhhcCccccCEEEEcc
Confidence 677889988888775555 799999999987776553 366 8899997432 1123477777764
Q ss_pred c
Q psy425 237 G 237 (254)
Q Consensus 237 ~ 237 (254)
.
T Consensus 71 ~ 71 (116)
T PF02254_consen 71 D 71 (116)
T ss_dssp S
T ss_pred C
Confidence 3
No 297
>KOG2360|consensus
Probab=90.68 E-value=0.55 Score=42.04 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=56.7
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK 221 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~ 221 (254)
...+|..|+|++|-.|.-|..+|......++++|+|.+.+..+..++.+... +..+++ ...+|+..
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~a-----g~~~~~-~~~~df~~ 275 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIA-----GVSIVE-SVEGDFLN 275 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHc-----CCCccc-cccccccC
Confidence 5667899999999999999999998877889999999999999999888775 456677 77888765
No 298
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.46 E-value=1.3 Score=32.78 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=49.6
Q ss_pred CEEEEEcCCCC-hHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CCCccEE
Q psy425 155 ANVLDLGFGSG-FMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NGPYDVI 232 (254)
Q Consensus 155 ~~VLDiG~G~G-~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~~fD~I 232 (254)
.+|.|+|.|-= ..+..|++++ ..|+++|+++. +.. ..+. +..-|+..+... -..-|+|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g---~dv~atDI~~~-------~a~---------~g~~-~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERG---FDVLATDINEK-------TAP---------EGLR-FVVDDITNPNISIYEGADLI 74 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcC---CcEEEEecccc-------cCc---------ccce-EEEccCCCccHHHhhCccce
Confidence 39999998642 2334455553 25999999977 111 2467 888898865432 1236899
Q ss_pred EecCcCcCchHHHHHHHHhh
Q psy425 233 HFGSGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 233 ~~~~~~~~~~~~l~~~lr~l 252 (254)
++.-..+++..++.+.-+.+
T Consensus 75 YSiRpppEl~~~ildva~aV 94 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAV 94 (129)
T ss_pred eecCCCHHHHHHHHHHHHhh
Confidence 99766666666666655443
No 299
>KOG2782|consensus
Probab=90.29 E-value=0.34 Score=40.08 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=49.2
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~ 199 (254)
....++.+ ...+|...+|.--|.|..+..+.+.. +..+++++|.+|-+.+.|+....
T Consensus 32 ~devl~~l--spv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 32 LDEVLDIL--SPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred hhhHHHHc--CCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 77888888 67789999999999999999999886 56789999999998888876653
No 300
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.69 E-value=2.9 Score=36.85 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=34.0
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
...++++||=+|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH
Confidence 345789999999864 5566666766542 268999999998888765
No 301
>KOG0821|consensus
Probab=89.69 E-value=3.5 Score=34.42 Aligned_cols=69 Identities=14% Similarity=0.096 Sum_probs=47.0
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR 220 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~ 220 (254)
..+.... ..-..+.|.+||.|.|.++..+...... +...+|.+...+.-.+-..+. ...+.. ++++|+.
T Consensus 40 ~KIvK~A--~~~~~~~v~eIgPgpggitR~il~a~~~--RL~vVE~D~RFip~LQ~L~EA------a~~~~~-IHh~D~L 108 (326)
T KOG0821|consen 40 DKIVKKA--GNLTNAYVYEIGPGPGGITRSILNADVA--RLLVVEKDTRFIPGLQMLSEA------APGKLR-IHHGDVL 108 (326)
T ss_pred HHHHHhc--cccccceeEEecCCCCchhHHHHhcchh--heeeeeeccccChHHHHHhhc------CCcceE-Eeccccc
Confidence 3344444 4446789999999999999998876533 688889988877665544333 223565 6677764
No 302
>KOG3924|consensus
Probab=89.47 E-value=1.2 Score=40.17 Aligned_cols=93 Identities=19% Similarity=0.160 Sum_probs=63.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-------CCCcccCCCee
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS-------YPKLYKLYKIM 212 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~-------~~~~~~~~~v~ 212 (254)
...+.+.+ .+.+++...|+|+|.|.....++..++. ..-+|+|+....-+.|..+...+ | .....++
T Consensus 181 l~si~dEl--~~g~~D~F~DLGSGVGqlv~~~aa~a~~-k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~ 254 (419)
T KOG3924|consen 181 LRSIVDEL--KLGPADVFMDLGSGVGQLVCFVAAYAGC-KKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIE 254 (419)
T ss_pred HHHHHHHh--ccCCCCcccCCCcccchhhHHHHHhhcc-ccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCcee
Confidence 66667777 7899999999999999999888877643 35688888877666665443321 2 1123466
Q ss_pred EEEEcCCCCCCc---CCCCccEEEecCcCc
Q psy425 213 DVVEWDARKPYK---KNGPYDVIHFGSGVK 239 (254)
Q Consensus 213 ~~~~~d~~~~~~---~~~~fD~I~~~~~~~ 239 (254)
.++++...+.. -....++|+++++..
T Consensus 255 -~i~gsf~~~~~v~eI~~eatvi~vNN~~F 283 (419)
T KOG3924|consen 255 -TIHGSFLDPKRVTEIQTEATVIFVNNVAF 283 (419)
T ss_pred -ecccccCCHHHHHHHhhcceEEEEecccC
Confidence 77888763221 123368999988763
No 303
>KOG1253|consensus
Probab=89.38 E-value=0.19 Score=46.25 Aligned_cols=81 Identities=16% Similarity=0.052 Sum_probs=62.7
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC----CCcC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK----PYKK 225 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~----~~~~ 225 (254)
...++-+|||.=|+||.-++..|+....-.+|++-|.++..++..++|.+.|+ ..+.++ ..+.|+.. ....
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~----v~~ive-~~~~DA~~lM~~~~~~ 180 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG----VEDIVE-PHHSDANVLMYEHPMV 180 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC----chhhcc-cccchHHHHHHhcccc
Confidence 34467799999999999999999887655689999999999999999998874 344566 77778751 1122
Q ss_pred CCCccEEEec
Q psy425 226 NGPYDVIHFG 235 (254)
Q Consensus 226 ~~~fD~I~~~ 235 (254)
...||+|-..
T Consensus 181 ~~~FDvIDLD 190 (525)
T KOG1253|consen 181 AKFFDVIDLD 190 (525)
T ss_pred ccccceEecC
Confidence 3569999665
No 304
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=89.35 E-value=5.4 Score=33.91 Aligned_cols=88 Identities=11% Similarity=0.181 Sum_probs=56.5
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC---C
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDK---GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP---Y 223 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~---~ 223 (254)
.+..+...+|+|+|+-..+..|...+.+. .+.+.+|++...+....+.+...- ..-.+. -+.+|.+.. .
T Consensus 75 ~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y----~~l~v~-~l~~~~~~~La~~ 149 (321)
T COG4301 75 SITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY----PGLEVN-ALCGDYELALAEL 149 (321)
T ss_pred HhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC----CCCeEe-ehhhhHHHHHhcc
Confidence 44568899999999999888887766432 479999999999887766655421 122344 566777632 2
Q ss_pred cCCCCccEEEecCcCcCch
Q psy425 224 KKNGPYDVIHFGSGVKHIP 242 (254)
Q Consensus 224 ~~~~~fD~I~~~~~~~~~~ 242 (254)
+..+.==.++.+..+-++.
T Consensus 150 ~~~~~Rl~~flGStlGN~t 168 (321)
T COG4301 150 PRGGRRLFVFLGSTLGNLT 168 (321)
T ss_pred cCCCeEEEEEecccccCCC
Confidence 2222222345666665543
No 305
>KOG2920|consensus
Probab=89.28 E-value=0.34 Score=41.60 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHH
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l 191 (254)
..+++|||+|||+|...+.....+. ..+...|.+.+.+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl 152 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVL 152 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc--ceeeeEecchhhe
Confidence 4789999999999999988777753 3688899998877
No 306
>KOG3201|consensus
Probab=88.78 E-value=0.2 Score=39.57 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC--CCCcCCCCc
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR--KPYKKNGPY 229 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~--~~~~~~~~f 229 (254)
.|.+|||+|.|- |..++.+|... +...|...|-+++.++..++....|- ......+. ++..+.. ........|
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~--~s~~tsc~-vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNM--ASSLTSCC-VLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhccc--ccccceeh-hhHHHHhhhHHHHhhCcc
Confidence 478999999984 55556666554 45679999999999998888765531 00122333 3333332 112234479
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|.|++..++
T Consensus 105 DiIlaADCl 113 (201)
T KOG3201|consen 105 DIILAADCL 113 (201)
T ss_pred cEEEeccch
Confidence 999998776
No 307
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=88.55 E-value=2.6 Score=34.37 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=55.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc---CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-----
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV---GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK----- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~---~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~----- 224 (254)
....|+|+|+-.|..++++|... |...+|+++|++-..++.+... .+.|. |+.++..++..
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i~-f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDIL-FIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCeE-EEeCCCCCHHHHHHHH
Confidence 55889999999998887777643 4445899999997665443332 35788 99998875421
Q ss_pred -CCCCccEEEecCcCcCchHHHHHHHHhh
Q psy425 225 -KNGPYDVIHFGSGVKHIPIEVSKLCRSQ 252 (254)
Q Consensus 225 -~~~~fD~I~~~~~~~~~~~~l~~~lr~l 252 (254)
..+.|--|++..--.|--+..+..|+.+
T Consensus 138 ~~~~~y~kIfvilDsdHs~~hvLAel~~~ 166 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSMEHVLAELKLL 166 (237)
T ss_pred HHhcCCCcEEEEecCCchHHHHHHHHHHh
Confidence 1223445655543334444444444443
No 308
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=88.48 E-value=2.4 Score=36.44 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=44.8
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKIS 201 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 201 (254)
+.+...+...-.+++.|||.-+|+|......... +. .++|+|++++.++.+.+++...
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~-~r--~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNL-GR--RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHc-CC--ceEEEecCHHHHHHHHHHHHhh
Confidence 3333333324568999999999999988875555 45 5999999999999999998874
No 309
>KOG0822|consensus
Probab=88.40 E-value=3 Score=39.09 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=59.3
Q ss_pred CEEEEEcCCCChHHH---HHHHHcCCCCEEEEEeCCHHHHHHHHHH-HHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 155 ANVLDLGFGSGFMSC---CMARMVGDKGHVTAVDHIPQLINLFMTK-LKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~---~la~~~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
..|+=+|+|.|-+.. ..++....+-++++||-+|.++-..+.+ .+. ...+|+ ++..|++.-.++..+.|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~------W~~~Vt-ii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC------WDNRVT-IISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh------hcCeeE-EEeccccccCCchhhcc
Confidence 367889999997653 3344444556899999999998776553 333 346799 99999986444335578
Q ss_pred EEEec--CcC--cCc-hHHHHHHHHhhc
Q psy425 231 VIHFG--SGV--KHI-PIEVSKLCRSQK 253 (254)
Q Consensus 231 ~I~~~--~~~--~~~-~~~l~~~lr~lk 253 (254)
++++- +.| -.+ |+=+..+.+.||
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLk 469 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLK 469 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcC
Confidence 87653 222 233 333444445554
No 310
>KOG1201|consensus
Probab=88.24 E-value=4.8 Score=34.99 Aligned_cols=75 Identities=20% Similarity=0.168 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCCh---HHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC------
Q psy425 153 PGANVLDLGFGSGF---MSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------ 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~---~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------ 223 (254)
.|..||--|.|+|. ++..+|+++ .++...|++++..+...+.+++. ..+. ...+|+.+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg---~~~vl~Din~~~~~etv~~~~~~-------g~~~-~y~cdis~~eei~~~a 105 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG---AKLVLWDINKQGNEETVKEIRKI-------GEAK-AYTCDISDREEIYRLA 105 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC---CeEEEEeccccchHHHHHHHHhc-------Ccee-EEEecCCCHHHHHHHH
Confidence 58899999999985 344455553 26899999999998888888763 2688 8888987422
Q ss_pred ----cCCCCccEEEecCcC
Q psy425 224 ----KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ----~~~~~fD~I~~~~~~ 238 (254)
.+.+..|+++.++++
T Consensus 106 ~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 106 KKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHhcCCceEEEecccc
Confidence 234678999999877
No 311
>KOG1098|consensus
Probab=88.16 E-value=0.52 Score=44.66 Aligned_cols=40 Identities=23% Similarity=0.144 Sum_probs=35.6
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHH
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~ 189 (254)
.+.++..|||+||..|.+....++.++..+-|+|+|+-|-
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 4678999999999999999999999887789999999763
No 312
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=87.87 E-value=2.3 Score=40.00 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
++.+|+=+|+|. |..+..+++..+. .|+.+|.+++.++.+++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA--~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 568999999996 6677777777665 69999999998777665
No 313
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.70 E-value=6.8 Score=33.32 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=53.1
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---------cC
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---------KK 225 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---------~~ 225 (254)
+.+|=.|+ |.++..+++.+....+|+.++.+++.++...+.+... ..++. ++.+|+.+.. ..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~Dv~d~~~i~~~~~~~~~ 73 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVS-TQEVDVSSRESVKALAATAQT 73 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEEeecCCHHHHHHHHHHHHh
Confidence 35666665 4688888887754458999999887766555555431 23577 8888886421 11
Q ss_pred CCCccEEEecCcCcCchHHHH
Q psy425 226 NGPYDVIHFGSGVKHIPIEVS 246 (254)
Q Consensus 226 ~~~fD~I~~~~~~~~~~~~l~ 246 (254)
.++.|.++.+.++......+.
T Consensus 74 ~g~id~li~nAG~~~~~~~~~ 94 (275)
T PRK06940 74 LGPVTGLVHTAGVSPSQASPE 94 (275)
T ss_pred cCCCCEEEECCCcCCchhhHH
Confidence 246899999887643333333
No 314
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=87.64 E-value=4 Score=34.13 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.| |+|.++..+++.+.. ..+|+.++.+++.++...+.+... ..++. ++.+|+.+...
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~-~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDAL-WIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEEccCCCHHHHHHHHHH
Confidence 578899999 566777777776533 237999999887776666555442 34677 88999874221
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 83 ~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 83 TLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11358999888764
No 315
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.21 E-value=3.2 Score=36.71 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.3
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeC---CHHHHHHHHH
Q psy425 151 LLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDH---IPQLINLFMT 196 (254)
Q Consensus 151 ~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~---s~~~l~~a~~ 196 (254)
+.++.+||-+|+|. |.++..+++..+. +|++++. +++.++.+++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~--~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGF--EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHH
Confidence 45789999999874 6666777777654 7999987 6676666554
No 316
>KOG2352|consensus
Probab=86.96 E-value=0.46 Score=43.80 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC-------CCcC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK-------PYKK 225 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~-------~~~~ 225 (254)
.+..+|-+|-|+|.+...+...+ +...+++++++|++++.|++++... ...+.. ++..|... .-..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~-----q~~r~~-V~i~dGl~~~~~~~k~~~~ 367 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFM-----QSDRNK-VHIADGLDFLQRTAKSQQE 367 (482)
T ss_pred ccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchh-----hhhhhh-hhHhhchHHHHHHhhcccc
Confidence 35688999999999998887776 4468999999999999999987542 223344 55555531 1123
Q ss_pred CCCccEEEec
Q psy425 226 NGPYDVIHFG 235 (254)
Q Consensus 226 ~~~fD~I~~~ 235 (254)
+..||++...
T Consensus 368 ~~~~dvl~~d 377 (482)
T KOG2352|consen 368 DICPDVLMVD 377 (482)
T ss_pred ccCCcEEEEE
Confidence 4568988764
No 317
>PTZ00357 methyltransferase; Provisional
Probab=86.79 E-value=5.9 Score=38.59 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=47.9
Q ss_pred EEEEEcCCCChHHHH---HHHHcCCCCEEEEEeCCHHHHHHHHHHHHh-hCCCc---ccCCCeeEEEEcCCCCCCcC---
Q psy425 156 NVLDLGFGSGFMSCC---MARMVGDKGHVTAVDHIPQLINLFMTKLKI-SYPKL---YKLYKIMDVVEWDARKPYKK--- 225 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~---la~~~~~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~---~~~~~v~~~~~~d~~~~~~~--- 225 (254)
.|+-+|+|.|-+-.. .++..+..-+|++||-++..+...+.+... ..|.. .....|+ ++..|++.-..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~Vt-II~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLE-VIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEE-EEeCccccccccccc
Confidence 589999999976533 333444455899999997755455444321 11100 0023589 999999853211
Q ss_pred --------CCCccEEEe
Q psy425 226 --------NGPYDVIHF 234 (254)
Q Consensus 226 --------~~~fD~I~~ 234 (254)
-+++|+|++
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 136899987
No 318
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.73 E-value=3.5 Score=34.34 Aligned_cols=78 Identities=18% Similarity=0.199 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.+||-.| |+|.++..+++.+... .+|++++.+++.++.....+... ..++. ++.+|+.+..
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAH-VVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEecCCCHHHHHHHHHH
Confidence 568899898 5566666666665333 37999999988877666655442 23677 8888886321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|+|+.+.+.
T Consensus 80 ~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 80 AETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112357999888764
No 319
>KOG1099|consensus
Probab=86.72 E-value=1.5 Score=36.69 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=54.5
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCC----CC----EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC---
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGD----KG----HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP--- 222 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~----~~----~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~--- 222 (254)
-.+|+|+++..|.++..|++.+.. .+ .+++||+.+=+ ....|. -+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----------------PI~GV~-qlq~DIT~~sta 104 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----------------PIEGVI-QLQGDITSASTA 104 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----------------ccCceE-EeecccCCHhHH
Confidence 468999999999999999988643 11 29999986421 234577 788998732
Q ss_pred -----CcCCCCccEEEecCcC-----cCchHHHHHH
Q psy425 223 -----YKKNGPYDVIHFGSGV-----KHIPIEVSKL 248 (254)
Q Consensus 223 -----~~~~~~fD~I~~~~~~-----~~~~~~l~~~ 248 (254)
.+...+-|+|++.++- |++.+.+..+
T Consensus 105 e~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~q 140 (294)
T KOG1099|consen 105 EAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQ 140 (294)
T ss_pred HHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHH
Confidence 2334578999999875 5665544333
No 320
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=86.58 E-value=5.4 Score=37.45 Aligned_cols=82 Identities=12% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC---CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC--CcCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG---DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP--YKKNG 227 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~---~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~--~~~~~ 227 (254)
++..+.|..||+|.+.....+... ....++|-|..+.+...++.|+.-++ ...+... ...+|-... .....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~---~~~~t~~-~~~~dtl~~~d~~~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHN---IDYANFN-IINADTLTTKEWENEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcC---CCccccC-cccCCcCCCccccccc
Confidence 668999999999998765443321 12359999999999999999875542 0112233 334444321 11234
Q ss_pred CccEEEecCcC
Q psy425 228 PYDVIHFGSGV 238 (254)
Q Consensus 228 ~fD~I~~~~~~ 238 (254)
+||.|+++..+
T Consensus 293 ~~D~v~~NpPf 303 (501)
T TIGR00497 293 GFEVVVSNPPY 303 (501)
T ss_pred cCCEEeecCCc
Confidence 58998887754
No 321
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.44 E-value=8.9 Score=33.61 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=34.5
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
.+++|++||-.|+|. |..+..+|+..+. +|++++.+++.++.+++.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~--~vi~~~~~~~~~~~a~~~ 208 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA--TVHVMTRGAAARRLALAL 208 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHh
Confidence 678899999999753 4455666666554 799999999887776653
No 322
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=86.24 E-value=3.6 Score=37.28 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=48.1
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---CCCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDK--GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---KNGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---~~~~f 229 (254)
.+||=||| |..+...++.+..+ .+|+..|.+.+.++.+.... ..+++ +...|+.+... .-..+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~---------~~~v~-~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI---------GGKVE-ALQVDAADVDALVALIKDF 69 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc---------cccce-eEEecccChHHHHHHHhcC
Confidence 47899999 55555555554332 48999999988877766553 23788 88888875321 12347
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|+|+.....
T Consensus 70 d~VIn~~p~ 78 (389)
T COG1748 70 DLVINAAPP 78 (389)
T ss_pred CEEEEeCCc
Confidence 888876644
No 323
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.81 E-value=2 Score=36.74 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcC----CCCEEEEEeCCHHHH
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVG----DKGHVTAVDHIPQLI 191 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~----~~~~v~gvD~s~~~l 191 (254)
+.++..++|+|||.|.++.++++... +...++.||-.....
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 46778999999999999999999873 235789999866444
No 324
>PRK07774 short chain dehydrogenase; Provisional
Probab=85.49 E-value=4.5 Score=33.45 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.| |+|.++..+++.+.. ..+|+.++.++...+...+.+.. ...++. ++..|+.+...
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~------~~~~~~-~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA------DGGTAI-AVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------cCCcEE-EEEcCCCCHHHHHHHHHH
Confidence 467888888 556777777765532 33899999987766555554443 123567 78889874321
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|+|+.+.+.
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 77 TVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11358999988775
No 325
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=85.33 E-value=3.5 Score=35.58 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC--CCCcc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK--NGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~--~~~fD 230 (254)
.|..|+=+| ---..+++++-. +-.-+|..+|+++..++...+.+++. +..|++ ....|+..++++ ..+||
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~-----g~~~ie-~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEEL-----GYNNIE-AFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHh-----Cccchh-heeehhcccChHHHHhhCC
Confidence 577899998 333444444433 22237999999999999999998885 577899 999999987766 35799
Q ss_pred EEEec
Q psy425 231 VIHFG 235 (254)
Q Consensus 231 ~I~~~ 235 (254)
+.+..
T Consensus 224 vfiTD 228 (354)
T COG1568 224 VFITD 228 (354)
T ss_pred eeecC
Confidence 87654
No 326
>PRK06172 short chain dehydrogenase; Provisional
Probab=84.02 E-value=6.5 Score=32.67 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|++ |.++..+++.+. ...+|+.++.+++.++.+.+.+... ..++. ++.+|+.+..
T Consensus 6 ~~k~ilItGas-~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 6 SGKVALVTGGA-AGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEAL-FVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceE-EEEcCCCCHHHHHHHHHH
Confidence 46789999975 445555555442 2348999999988776666665542 24688 8889987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|.|+.+.+.
T Consensus 78 ~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 78 TIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 012357999988765
No 327
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=83.89 E-value=3.4 Score=37.14 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=39.0
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
.+.++.+||.+|||. |..+..+++..+. .++++++.+++.++.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 577899999999987 8888888888653 3699999999998887765
No 328
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=83.60 E-value=2.7 Score=36.58 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEE----EEcCCCCCC-----cCCCCccE
Q psy425 163 GSGFMSCCMARMVGDK--GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDV----VEWDARKPY-----KKNGPYDV 231 (254)
Q Consensus 163 G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~----~~~d~~~~~-----~~~~~fD~ 231 (254)
|+|.++..|.+.+-.. .+++.+|.++..+-..++.+.... ...++. + +.+|+.+.. .....+|+
T Consensus 6 a~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~-~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 6 AGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVR-FEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp TTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCE-EEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred cccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcc-cccCceeecccCHHHHHHHHhhcCCCE
Confidence 6788988888876332 379999999999988888875431 223454 4 488887321 22335899
Q ss_pred EEecCcCcCchH
Q psy425 232 IHFGSGVKHIPI 243 (254)
Q Consensus 232 I~~~~~~~~~~~ 243 (254)
|+-.+++.|+|-
T Consensus 81 VfHaAA~KhVpl 92 (293)
T PF02719_consen 81 VFHAAALKHVPL 92 (293)
T ss_dssp EEE------HHH
T ss_pred EEEChhcCCCCh
Confidence 999999988774
No 329
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.50 E-value=13 Score=32.21 Aligned_cols=45 Identities=31% Similarity=0.516 Sum_probs=35.2
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++.+||..|+|. |..+..+++..+. +|++++.+++..+.+++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G~--~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMGA--AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH
Confidence 467889999988763 7777777877654 69999999998877754
No 330
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=83.24 E-value=3.7 Score=37.15 Aligned_cols=53 Identities=21% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 143 ~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
-++.| .+.++++||=|.+|.... +.+... ...+|++||+||..+...+-++..
T Consensus 27 D~~aL--~i~~~d~vl~ItSaG~N~-L~yL~~--~P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 27 DMEAL--NIGPDDRVLTITSAGCNA-LDYLLA--GPKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHHh--CCCCCCeEEEEccCCchH-HHHHhc--CCceEEEEeCCHHHHHHHHHHHHH
Confidence 45667 899999999998765444 333333 224899999999988777655443
No 331
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.21 E-value=8.5 Score=31.71 Aligned_cols=78 Identities=8% Similarity=0.024 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
++.++|-.|+ +|.++..+++.+.. ..+|+.++.++..++.+.+.+... ..++. ++..|+.+..
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVR-GYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceE-EEEcCCCCHHHHHHHHHH
Confidence 4678998886 45556666655432 347999999987776666555442 34677 8888876321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|.|+.+.+.
T Consensus 76 ~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 76 IAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 011458999888664
No 332
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.94 E-value=15 Score=32.01 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|+++| ++..+++.+. ...+|+.+..+++..+.+.+.+.... ...++. ++.+|+.+..
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~----~~~~v~-~~~~Dl~d~~sv~~~~~~ 86 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV----PDAKLS-LRALDLSSLASVAALGEQ 86 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceE-EEEecCCCHHHHHHHHHH
Confidence 4678888888655 4444454432 33489999998887766666554421 223688 8899987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|+++.+.+.
T Consensus 87 ~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 87 LRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHhCCCccEEEECCcc
Confidence 112458999988765
No 333
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.86 E-value=12 Score=31.53 Aligned_cols=79 Identities=18% Similarity=0.202 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.++++|-.|+++|. +..+++.+. ...+|+.++.+++.++.+.+.+... ...++. ++.+|+.+..
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLARAGADVILLSRNEENLKKAREKIKSE-----SNVDVS-YIVADLTKREDLERTVKE 79 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceE-EEEecCCCHHHHHHHHHH
Confidence 46788988877654 444444432 2347999999988777666665442 124688 8889987431
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
...++.|+++.+.+.
T Consensus 80 ~~~~g~iD~lv~nag~ 95 (263)
T PRK08339 80 LKNIGEPDIFFFSTGG 95 (263)
T ss_pred HHhhCCCcEEEECCCC
Confidence 112458988888765
No 334
>PRK07890 short chain dehydrogenase; Provisional
Probab=81.80 E-value=12 Score=31.09 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|++ |.++..+++.+. ...+|+.++.+++-.+...+.+... ..++. ++..|+.+...
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRAL-AVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceE-EEecCCCCHHHHHHHHHH
Confidence 56788988864 455555555443 2348999999987766665555442 24677 88999864211
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+..|.|+.+.+.
T Consensus 76 ~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 76 ALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHcCCccEEEECCcc
Confidence 11458999888765
No 335
>PRK05867 short chain dehydrogenase; Provisional
Probab=81.28 E-value=8.4 Score=32.05 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|+++| ++..+++.+. ...+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 8 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 8 HGKRALITGASTG-IGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVV-PVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEE-EEEccCCCHHHHHHHHHH
Confidence 4788999997655 4444444442 2337999999988777666655542 24577 8888886421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|.++.+.+.
T Consensus 80 ~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 80 VTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 012468999888765
No 336
>KOG1562|consensus
Probab=80.22 E-value=6.8 Score=34.14 Aligned_cols=90 Identities=19% Similarity=0.070 Sum_probs=64.8
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--cCCC
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--KKNG 227 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--~~~~ 227 (254)
.+...++||-||-|-|......+++ ..-+.++-+|++...++..++.+...-.. ....+|. ++.||..... ...+
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g-y~~~~v~-l~iGDG~~fl~~~~~~ 194 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG-YEGKKVK-LLIGDGFLFLEDLKEN 194 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc-cCCCceE-EEeccHHHHHHHhccC
Confidence 3456789999999999988777766 44557999999999999998887653110 2346788 9999986322 2356
Q ss_pred CccEEEecCcCcCch
Q psy425 228 PYDVIHFGSGVKHIP 242 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~ 242 (254)
+||+|+....=+-.|
T Consensus 195 ~~dVii~dssdpvgp 209 (337)
T KOG1562|consen 195 PFDVIITDSSDPVGP 209 (337)
T ss_pred CceEEEEecCCccch
Confidence 799998876543333
No 337
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=79.85 E-value=17 Score=30.41 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|+++|. +..+++.+ ....+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 9 ~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL------GIEAH-GYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCceE-EEEcCCCCHHHHHHHHHH
Confidence 56789999987654 33344333 22347999999988777666666542 23677 8889987321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|.++.+.+.
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 112458999888776
No 338
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.81 E-value=11 Score=31.64 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCC-hHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGSG-FMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G-~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|-.|+++| .++..+++.+... .+|+.++.+++..+..++...+ ...+. ++.+|+.+..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-------~~~~~-~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE-------LDAPI-FLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh-------hccce-EEecCcCCHHHHHHHHH
Confidence 5789999998873 6777777665332 3788888876543333333222 12355 6778876321
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...++.|+++.+.++
T Consensus 81 ~~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHHcCCCCEEEEcCcc
Confidence 112468999988765
No 339
>PRK07677 short chain dehydrogenase; Provisional
Probab=79.63 E-value=11 Score=31.43 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=47.9
Q ss_pred CCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--------- 223 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--------- 223 (254)
++++|-.|++.| ++..+++.+. ...+|+.++.+++.++.+.+.+... ..++. ++.+|+.+..
T Consensus 1 ~k~~lItG~s~g-iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~~ 72 (252)
T PRK07677 1 EKVVIITGGSSG-MGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVL-TVQMDVRNPEDVQKMVEQI 72 (252)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEecCCCHHHHHHHHHHH
Confidence 357888887655 4444444432 2337999999987776666555442 24687 8889986421
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
...++.|.|+.+.+.
T Consensus 73 ~~~~~~id~lI~~ag~ 88 (252)
T PRK07677 73 DEKFGRIDALINNAAG 88 (252)
T ss_pred HHHhCCccEEEECCCC
Confidence 011357998877653
No 340
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=79.37 E-value=2.3 Score=35.81 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~ 199 (254)
...+++.+. -.+..+++|.-||+|..+..+.... .+|+.-|+++..+...+..++
T Consensus 9 ~~~I~~~ip--~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 9 AKWIIELIP--KNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp HHHHHHHS---S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence 455555552 1168899999999999988876543 369999999998877774444
No 341
>PRK06194 hypothetical protein; Provisional
Probab=79.27 E-value=11 Score=32.08 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|++ |.++..+++.+.. ..+|+.+|.+++.++...+.+... ..++. ++.+|+.+...
T Consensus 5 ~~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 5 AGKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVL-GVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEE-EEECCCCCHHHHHHHHHH
Confidence 35688877754 5566666655432 347999999887766555544431 23577 88999874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|+|+.+.+.
T Consensus 77 ~~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 77 ALERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11357999998876
No 342
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=78.88 E-value=5 Score=35.40 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=32.8
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHH-cCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARM-VGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~-~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.++++++||-+|||. |.++..+++. .+ ..+|+++|.+++.++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhh
Confidence 357899999999864 4455555654 22 2369999999988888764
No 343
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=78.70 E-value=5.9 Score=38.14 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=42.4
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cCCCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KKNGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~~~~f 229 (254)
.+|+=+| .|..+..+++..... -.++.+|.+++.++.+++. ... +..+|+.+.. ..-...
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~-v~~GDat~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY------------GYK-VYYGDATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC------------CCe-EEEeeCCCHHHHHhcCCccC
Confidence 3555554 566766666654322 2699999999998877542 355 8889987432 112346
Q ss_pred cEEEecC
Q psy425 230 DVIHFGS 236 (254)
Q Consensus 230 D~I~~~~ 236 (254)
|.+++..
T Consensus 466 ~~vv~~~ 472 (601)
T PRK03659 466 EAIVITC 472 (601)
T ss_pred CEEEEEe
Confidence 7776653
No 344
>PRK05599 hypothetical protein; Provisional
Probab=78.63 E-value=20 Score=29.82 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=50.2
Q ss_pred EEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----------cC
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----------KK 225 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----------~~ 225 (254)
.+|-.|+++| ++..+++.+....+|+.++.+++.++...+.+... +...+. ++.+|+.+.. ..
T Consensus 2 ~vlItGas~G-IG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~-----~~~~~~-~~~~Dv~d~~~v~~~~~~~~~~ 74 (246)
T PRK05599 2 SILILGGTSD-IAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQR-----GATSVH-VLSFDAQDLDTHRELVKQTQEL 74 (246)
T ss_pred eEEEEeCccH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCceE-EEEcccCCHHHHHHHHHHHHHh
Confidence 4677787655 55556665544558999998888877776666553 223477 8888887421 11
Q ss_pred CCCccEEEecCcC
Q psy425 226 NGPYDVIHFGSGV 238 (254)
Q Consensus 226 ~~~fD~I~~~~~~ 238 (254)
.++.|+++.+.+.
T Consensus 75 ~g~id~lv~nag~ 87 (246)
T PRK05599 75 AGEISLAVVAFGI 87 (246)
T ss_pred cCCCCEEEEecCc
Confidence 2468999887765
No 345
>PRK06139 short chain dehydrogenase; Provisional
Probab=78.47 E-value=12 Score=32.89 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+++||=.|+++ .++..+++.+. ...+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 6 ~~k~vlITGAs~-GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~------g~~~~-~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 6 HGAVVVITGASS-GIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL------GAEVL-VVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCCEEEEcCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEE-EEEeeCCCHHHHHHHHHH
Confidence 467888888754 44444554432 2347999999998887777766553 23577 7788886421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+...
T Consensus 78 ~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 78 AASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 012468999988764
No 346
>PRK05866 short chain dehydrogenase; Provisional
Probab=78.25 E-value=20 Score=30.84 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|++ |.++..+++.+.. ..+|+.++.+++.++...+.+... ...+. ++.+|+.+..
T Consensus 39 ~~k~vlItGas-ggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~-~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 39 TGKRILLTGAS-SGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAM-AVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEE-EEEccCCCHHHHHHHHHH
Confidence 35788988875 4555555554422 348999999988777666655442 23577 8888987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.+.
T Consensus 111 ~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 111 VEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 012358999988765
No 347
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=78.15 E-value=16 Score=31.44 Aligned_cols=72 Identities=22% Similarity=0.139 Sum_probs=51.0
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCc
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~f 229 (254)
.+.+|....|+|+..|..|-.|.++. -.|++||..+-+ +.+.. ...|+ -...|.....+...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma-----~sL~d-------tg~v~-h~r~DGfk~~P~r~~i 271 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMA-----QSLMD-------TGQVT-HLREDGFKFRPTRSNI 271 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccchhh-----hhhhc-------cccee-eeeccCcccccCCCCC
Confidence 46789999999999999998887663 379999976432 22222 34677 7777877544445567
Q ss_pred cEEEecCc
Q psy425 230 DVIHFGSG 237 (254)
Q Consensus 230 D~I~~~~~ 237 (254)
|-.+|..+
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 88877765
No 348
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.06 E-value=22 Score=29.47 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|++.| ++..+++.+. ...+|+.++.+++.++.+.+.+... ..++. ++.+|+.+..
T Consensus 5 ~~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 5 NGKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE------GGEAV-ALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEcCCCCHHHHHHHHHH
Confidence 4568888887644 4444554432 2337999999988777666665542 24677 8888987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|.++.+.+.
T Consensus 77 ~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 77 AVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112368999888765
No 349
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.05 E-value=19 Score=30.58 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|+++| ++..+++.+.. ..+|+.++.+++.++.+.+.+... ..++. ++.+|+.+..
T Consensus 5 ~~k~vlVTGas~g-IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~~~~~-~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------GFDVH-GVMCDVRHREEVTHLADE 76 (275)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEeCCCCCHHHHHHHHHH
Confidence 4678898887644 55555555432 337999999987776665555442 23577 8888986421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|+++.+.+.
T Consensus 77 ~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 77 AFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 112357999888765
No 350
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.00 E-value=21 Score=29.76 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.++++|-.|+++ .++..+++.+. ...+|+.++.+++.++...+.+...+ ...++. ++.+|+.+...
T Consensus 6 ~~k~vlVtGas~-gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 6 AGKVALVTGAAQ-GIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV----AGARVL-AVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----CCceEE-EEEccCCCHHHHHHHHHH
Confidence 467899888764 45555555442 23479999999887777666655411 123677 88899874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.++.+.+.
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 12458999888765
No 351
>PRK12829 short chain dehydrogenase; Provisional
Probab=77.66 E-value=16 Score=30.43 Aligned_cols=77 Identities=21% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc------
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------ 224 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------ 224 (254)
.++.++|-.|+. |.++..+++.+.. ..+|++++.+++..+...+.... .++. ++.+|+.+...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~~-~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--------AKVT-ATVADVADPAQVERVFD 78 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--------CceE-EEEccCCCHHHHHHHHH
Confidence 377899999875 5556655555422 34799999988766544433322 1567 88888874221
Q ss_pred ----CCCCccEEEecCcC
Q psy425 225 ----KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ----~~~~fD~I~~~~~~ 238 (254)
..+++|.|+.+.+.
T Consensus 79 ~~~~~~~~~d~vi~~ag~ 96 (264)
T PRK12829 79 TAVERFGGLDVLVNNAGI 96 (264)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 11358999887754
No 352
>PRK06125 short chain dehydrogenase; Provisional
Probab=77.66 E-value=18 Score=30.11 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC------cC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------KK 225 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------~~ 225 (254)
.++++|=.|+++| ++..+++.+.. ..+|++++.+++.++.+.+.+... ...++. ++.+|+.+.. ..
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~-~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAA-----HGVDVA-VHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh-----cCCceE-EEEecCCCHHHHHHHHHH
Confidence 4678898997544 55555554422 338999999988777666655542 134677 8888886321 11
Q ss_pred CCCccEEEecCcC
Q psy425 226 NGPYDVIHFGSGV 238 (254)
Q Consensus 226 ~~~fD~I~~~~~~ 238 (254)
.++.|.++.+.+.
T Consensus 79 ~g~id~lv~~ag~ 91 (259)
T PRK06125 79 AGDIDILVNNAGA 91 (259)
T ss_pred hCCCCEEEECCCC
Confidence 2458998887654
No 353
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.61 E-value=9.2 Score=35.74 Aligned_cols=75 Identities=23% Similarity=0.277 Sum_probs=43.4
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCC
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGP 228 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~ 228 (254)
.+.++.+|+=+|.|. |..+..++...+ .+|++.|..+..++. +.+. .+. +..++... .....
T Consensus 8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G--~~v~~~D~~~~~~~~----l~~~--------g~~-~~~~~~~~--~~l~~ 70 (488)
T PRK03369 8 PLLPGAPVLVAGAGVTGRAVLAALTRFG--ARPTVCDDDPDALRP----HAER--------GVA-TVSTSDAV--QQIAD 70 (488)
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHH----HHhC--------CCE-EEcCcchH--hHhhc
Confidence 345788999999985 444443444433 379999987664332 2221 345 54433211 11123
Q ss_pred ccEEEecCcCcCc
Q psy425 229 YDVIHFGSGVKHI 241 (254)
Q Consensus 229 fD~I~~~~~~~~~ 241 (254)
+|+|+.+.+++.-
T Consensus 71 ~D~VV~SpGi~~~ 83 (488)
T PRK03369 71 YALVVTSPGFRPT 83 (488)
T ss_pred CCEEEECCCCCCC
Confidence 7999999888543
No 354
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.44 E-value=19 Score=30.16 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++.++|=.|+ +|.++..+++.+. ...+|+.++.+++.++...+.+... ..++. ++.+|+.....
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAH-VVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEccCCCHHHHHHHHHH
Confidence 5778999995 5666666666542 2348999999987766655555431 24577 88899874321
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+++|.|+.+...
T Consensus 81 ~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 81 AVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 01358999887653
No 355
>PRK07062 short chain dehydrogenase; Provisional
Probab=77.34 E-value=22 Score=29.64 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+..+|-.|+++| ++..+++.+. ...+|+.++.+++.++.+.+.+.... ...++. ++.+|+.+..
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLL-AARCDVLDEADVAAFAAA 80 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEE-EEEecCCCHHHHHHHHHH
Confidence 4678999997654 4445555442 23479999999887776666554421 123577 7888887421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|.++.+.+.
T Consensus 81 ~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 81 VEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112458999888765
No 356
>PRK08251 short chain dehydrogenase; Provisional
Probab=77.29 E-value=24 Score=28.98 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--------- 223 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--------- 223 (254)
+.++|-.|+ +|.++..+++.+... .+|+.++.+++.++.....+.... ...++. +..+|+.+..
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVA-VAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEE-EEEcCCCCHHHHHHHHHHH
Confidence 457888885 667777776665332 379999999887776665554421 134678 8899987431
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
...++.|.|+.+.+.
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 76 RDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHcCCCCEEEECCCc
Confidence 112358999888765
No 357
>PRK07035 short chain dehydrogenase; Provisional
Probab=77.27 E-value=18 Score=29.96 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.+||=.|+++| ++..+++.+. ...+|+.++.+++.++...+.+... ..++. ++..|+.+..
T Consensus 7 ~~k~vlItGas~g-IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 7 TGKIALVTGASRG-IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------GGKAE-ALACHIGEMEQIDALFAH 78 (252)
T ss_pred CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEEcCCCCHHHHHHHHHH
Confidence 4578888887755 4444444432 2338999999887776666555442 23567 7788886321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+.+.
T Consensus 79 ~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 79 IRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 012358998877653
No 358
>PRK09072 short chain dehydrogenase; Provisional
Probab=77.27 E-value=19 Score=30.14 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++.++|=.|+++ .++..+++.+ ....+|++++.+++.++.....+ . ...++. ++.+|+.+...
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~------~~~~~~-~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAGARLLLVGRNAEKLEALAARL-P------YPGRHR-WVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-h------cCCceE-EEEccCCCHHHHHHHHHH
Confidence 456788888764 4555555443 22347999999988776665544 2 134688 88899874321
Q ss_pred --CCCCccEEEecCcC
Q psy425 225 --KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 --~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 75 ~~~~~~id~lv~~ag~ 90 (263)
T PRK09072 75 AREMGGINVLINNAGV 90 (263)
T ss_pred HHhcCCCCEEEECCCC
Confidence 12457999888765
No 359
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=77.16 E-value=13 Score=30.37 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCC-ChH-HHHHHHHcCCCCEEEEEeCC
Q psy425 153 PGANVLDLGFGS-GFM-SCCMARMVGDKGHVTAVDHI 187 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~-t~~la~~~~~~~~v~gvD~s 187 (254)
...+||=+|||. |.. +..|+.. + -++++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-G-v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-G-VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-C-CCeEEEecCC
Confidence 578999999984 443 3334443 2 2479999877
No 360
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=76.96 E-value=8 Score=36.78 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=42.1
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cCCCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KKNGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~~~~f 229 (254)
++++=+|| |..+..+++..... -.++.+|.+++.++.+++. ... .+.+|+.+.. ..-+..
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~------------g~~-~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER------------GIR-AVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC------------CCe-EEEcCCCCHHHHHhcCcccc
Confidence 45555555 66666677765332 2699999999988777642 356 8889987532 122357
Q ss_pred cEEEec
Q psy425 230 DVIHFG 235 (254)
Q Consensus 230 D~I~~~ 235 (254)
|.+++.
T Consensus 483 ~~viv~ 488 (558)
T PRK10669 483 RWLLLT 488 (558)
T ss_pred CEEEEE
Confidence 866553
No 361
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=76.96 E-value=49 Score=30.20 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=51.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
...+...+.+......+++=+|+ |.++..+++.+.. ...|+.+|.+++.++.+++.. ..+. ++.+|
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~-~i~gd 283 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTL-VLHGD 283 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCe-EEECC
Confidence 33344444322334577888777 6677666666533 337999999999887766542 2466 88899
Q ss_pred CCCCC----cCCCCccEEEecC
Q psy425 219 ARKPY----KKNGPYDVIHFGS 236 (254)
Q Consensus 219 ~~~~~----~~~~~fD~I~~~~ 236 (254)
..+.. ..-..+|.|++..
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECC
Confidence 86321 1223478887654
No 362
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=76.92 E-value=16 Score=30.19 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=52.2
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC------
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------ 223 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------ 223 (254)
..++.+||=.|+ +|.++..+++.+.. ..+|++++.+++.++...+.+... ...++. ++.+|+....
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-----~~~~~~-~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAA-----GGPQPA-IIPLDLLTATPQNYQQ 81 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhc-----CCCCce-EEEecccCCCHHHHHH
Confidence 347889999995 56666666665532 238999999987776665555542 234567 7777774211
Q ss_pred ------cCCCCccEEEecCcC
Q psy425 224 ------KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ------~~~~~fD~I~~~~~~ 238 (254)
...++.|.|+.+.+.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag~ 102 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAGL 102 (247)
T ss_pred HHHHHHHHhCCCCEEEECCcc
Confidence 112358999888754
No 363
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=76.77 E-value=25 Score=31.78 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=42.6
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcC------CCCEEEEEeC----CHHHHHHHHHHHHhh
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVG------DKGHVTAVDH----IPQLINLFMTKLKIS 201 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~------~~~~v~gvD~----s~~~l~~a~~~~~~~ 201 (254)
...+++.+ .-...-+|+|+|.|.|.--..|-+.+. +.-++|||+. +...++.+.+++.+.
T Consensus 99 NqaIleA~--~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~f 168 (374)
T PF03514_consen 99 NQAILEAF--EGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEF 168 (374)
T ss_pred hHHHHHHh--ccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHH
Confidence 45566776 334556899999999975554444331 3348999999 888888888887653
No 364
>KOG0022|consensus
Probab=76.69 E-value=7.8 Score=34.14 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCCChHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 141 AACLQHLSDKLLPGANVLDLGFGSGFMS-CCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 141 ~~~l~~l~~~~~~~~~VLDiG~G~G~~t-~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
..++... .+.+|.+|.-+|+|.=.++ ..-++..+ -++++|||++++-.+.|++-
T Consensus 182 GAa~~~A--kv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 182 GAAWNTA--KVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred hhhhhhc--ccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHhc
Confidence 4445555 7889999999999874444 44444443 35899999999999888774
No 365
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.63 E-value=20 Score=32.83 Aligned_cols=74 Identities=19% Similarity=0.184 Sum_probs=44.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCH-HHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIP-QLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
.+.+|+=+|+|. .+..+|+.+. ....|+++|.++ +.++...+.+.. .+++ +..+|..+. ..+.+|
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~--------~~~~-~~~~~~~~~--~~~~~d 70 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE--------LGIE-LVLGEYPEE--FLEGVD 70 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--------cCCE-EEeCCcchh--HhhcCC
Confidence 467899999876 4444555442 233799999985 333222233333 2466 777776542 123589
Q ss_pred EEEecCcCc
Q psy425 231 VIHFGSGVK 239 (254)
Q Consensus 231 ~I~~~~~~~ 239 (254)
+|+.+....
T Consensus 71 ~vv~~~g~~ 79 (450)
T PRK14106 71 LVVVSPGVP 79 (450)
T ss_pred EEEECCCCC
Confidence 998887764
No 366
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.57 E-value=8.4 Score=33.57 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=39.5
Q ss_pred HHHhhhcCCCCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 144 l~~l~~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
++.+ .+..|.+|.-||+|.-.....+++. ..+|.+||+++..+...+-++..
T Consensus 56 meam--~~g~ghrivtigSGGcn~L~ylsr~---Pa~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 56 MEAM--QLGIGHRIVTIGSGGCNMLAYLSRA---PARIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred HHHH--hcCCCcEEEEecCCcchHHHHhhcC---CceeEEEeCCHHHHHHHHHHHHH
Confidence 3555 6778999999999977676666644 24799999999988777666554
No 367
>PRK07831 short chain dehydrogenase; Provisional
Probab=76.54 E-value=21 Score=29.73 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCC-CChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC------
Q psy425 152 LPGANVLDLGFG-SGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------ 223 (254)
Q Consensus 152 ~~~~~VLDiG~G-~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------ 223 (254)
..+.++|=.|+. +| ++..+++.+. ...+|+.++.+++.++.+.+.+... ....++. ++.+|+.+..
T Consensus 15 ~~~k~vlItG~sg~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 15 LAGKVVLVTAAAGTG-IGSATARRALEEGARVVISDIHERRLGETADELAAE----LGLGRVE-AVVCDVTSEAQVDALI 88 (262)
T ss_pred cCCCEEEEECCCccc-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh----cCCceEE-EEEccCCCHHHHHHHH
Confidence 357889989863 34 3343444332 2237999999888777766665542 0223677 8889987421
Q ss_pred ----cCCCCccEEEecCcC
Q psy425 224 ----KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ----~~~~~fD~I~~~~~~ 238 (254)
...++.|+++.+.+.
T Consensus 89 ~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 89 DAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 112458999888775
No 368
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.41 E-value=6.9 Score=37.85 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=42.8
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cCCCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KKNGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~~~~f 229 (254)
.+|+=+|+| ..+..+++.....+ .++.+|.+++.++.+++. ... +..+|..+.. ..-+..
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~------------g~~-v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF------------GMK-VFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc------------CCe-EEEEeCCCHHHHHhcCCCcC
Confidence 567777765 45555555443222 699999999998887652 355 8889987532 122346
Q ss_pred cEEEecC
Q psy425 230 DVIHFGS 236 (254)
Q Consensus 230 D~I~~~~ 236 (254)
|.+++..
T Consensus 466 ~~vvv~~ 472 (621)
T PRK03562 466 EVLINAI 472 (621)
T ss_pred CEEEEEe
Confidence 7776654
No 369
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=76.27 E-value=2.2 Score=34.41 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHcCCCC-EEEEEeCCHHHHHHHH
Q psy425 163 GSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFM 195 (254)
Q Consensus 163 G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~ 195 (254)
|.|+.++.+|..+...| +|+|+|++++.++..+
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 45666655555443332 7999999999877664
No 370
>PRK08643 acetoin reductase; Validated
Probab=76.23 E-value=25 Score=29.15 Aligned_cols=77 Identities=21% Similarity=0.138 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--------- 223 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--------- 223 (254)
++++|=.|+. |.++..+++.+.. ..+|+.++.+++..+.....+... ..++. ++.+|+.+..
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~~~~~~~~~ 73 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------GGKAI-AVKADVSDRDQVFAAVRQV 73 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEECCCCCHHHHHHHHHHH
Confidence 4567777754 5566656655432 338999999887776666655442 24677 8889987432
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
...++.|.++.+.+.
T Consensus 74 ~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 74 VDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHcCCCCEEEECCCC
Confidence 012357998887754
No 371
>PRK06720 hypothetical protein; Provisional
Probab=75.77 E-value=26 Score=27.67 Aligned_cols=79 Identities=15% Similarity=0.120 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+..+|-.|.+.|. +..++..+ ....+|+.+|.+++.++.+.+.+... ...+. +...|+....
T Consensus 15 ~gk~~lVTGa~~GI-G~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~------~~~~~-~~~~Dl~~~~~v~~~v~~ 86 (169)
T PRK06720 15 AGKVAIVTGGGIGI-GRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL------GGEAL-FVSYDMEKQGDWQRVISI 86 (169)
T ss_pred CCCEEEEecCCChH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEE-EEEccCCCHHHHHHHHHH
Confidence 57788888887654 33333332 23347999999887766555554432 23466 7788876321
Q ss_pred --cCCCCccEEEecCcCc
Q psy425 224 --KKNGPYDVIHFGSGVK 239 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~~ 239 (254)
...+..|.++.+.+..
T Consensus 87 ~~~~~G~iDilVnnAG~~ 104 (169)
T PRK06720 87 TLNAFSRIDMLFQNAGLY 104 (169)
T ss_pred HHHHcCCCCEEEECCCcC
Confidence 1124589998887663
No 372
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.75 E-value=26 Score=28.73 Aligned_cols=79 Identities=14% Similarity=0.106 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++.++|-.|+ +|.++..+++.+.. ..+|+.++.+++.++...+.+... ....+. +...|+.+...
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-----~~~~~~-~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEA-----GHPEPF-AIRFDLMSAEEKEFEQFA 77 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHc-----CCCCcc-eEEeeecccchHHHHHHH
Confidence 4678999996 55566666655532 348999999988776665555442 123455 66666642110
Q ss_pred -----CC-CCccEEEecCcC
Q psy425 225 -----KN-GPYDVIHFGSGV 238 (254)
Q Consensus 225 -----~~-~~fD~I~~~~~~ 238 (254)
.. +..|.|+.+.+.
T Consensus 78 ~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 78 ATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHHHhCCCCCEEEEeccc
Confidence 01 357998887764
No 373
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=75.75 E-value=12 Score=36.48 Aligned_cols=90 Identities=12% Similarity=-0.002 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc------CC-----CCEEEEEeCCH---HHHHHH-----------HHHHHhhCCCccc
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV------GD-----KGHVTAVDHIP---QLINLF-----------MTKLKISYPKLYK 207 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~------~~-----~~~v~gvD~s~---~~l~~a-----------~~~~~~~~~~~~~ 207 (254)
+.-+|+|+|-|+|...+...+.. .+ .-+++++|..| +-+..+ ++..........+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34699999999999777666544 12 24799999765 222222 2222111000001
Q ss_pred -------CC--CeeEEEEcCCCCCCcC-CCCccEEEecCcCc-CchH
Q psy425 208 -------LY--KIMDVVEWDARKPYKK-NGPYDVIHFGSGVK-HIPI 243 (254)
Q Consensus 208 -------~~--~v~~~~~~d~~~~~~~-~~~fD~I~~~~~~~-~~~~ 243 (254)
.. +++ +..+|+.+.... ...||+++..+--+ .-|+
T Consensus 137 ~~~~~~~~~~~~l~-l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~ 182 (662)
T PRK01747 137 CHRLLFDDGRVTLD-LWFGDANELLPQLDARADAWFLDGFAPAKNPD 182 (662)
T ss_pred ceEEEecCCcEEEE-EEecCHHHHHHhccccccEEEeCCCCCccChh
Confidence 11 345 667888643332 24599999986443 4444
No 374
>PRK08589 short chain dehydrogenase; Validated
Probab=75.72 E-value=24 Score=29.81 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|++.| ++..+++.+. ...+|+.++.+ +.++...+.+... ..++. ++.+|+.+..
T Consensus 5 ~~k~vlItGas~g-IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 5 ENKVAVITGASTG-IGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN------GGKAK-AYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc------CCeEE-EEEeecCCHHHHHHHHHH
Confidence 4678888887655 4444554442 33489999988 4444444444432 23577 8888987431
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.+.
T Consensus 76 ~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHcCCcCEEEECCCC
Confidence 112457999888765
No 375
>PRK06914 short chain dehydrogenase; Provisional
Probab=75.61 E-value=22 Score=29.98 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--------
Q psy425 154 GANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-------- 224 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-------- 224 (254)
+.++|-.|+. |.++..+++.+ ....+|++++-+++.++...+.....+ ...++. ++.+|+.+...
T Consensus 3 ~k~~lItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~D~~d~~~~~~~~~~~ 76 (280)
T PRK06914 3 KKIAIVTGAS-SGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN----LQQNIK-VQQLDVTDQNSIHNFQLVL 76 (280)
T ss_pred CCEEEEECCC-chHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCcee-EEecCCCCHHHHHHHHHHH
Confidence 4578888854 45555555543 223379999988876665554443321 124688 88999875321
Q ss_pred -CCCCccEEEecCcC
Q psy425 225 -KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 -~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 77 ~~~~~id~vv~~ag~ 91 (280)
T PRK06914 77 KEIGRIDLLVNNAGY 91 (280)
T ss_pred HhcCCeeEEEECCcc
Confidence 11357988887654
No 376
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.58 E-value=20 Score=30.18 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|++.| ++..+++.+. ...+|+.++.+++..+...+.+... ..++. ++.+|+.+...
T Consensus 9 ~~k~vlVtGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 9 KGKVAVITGGGGV-LGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA------GGEAL-AVKADVLDKESLEQARQQ 80 (278)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEECCCCCHHHHHHHHHH
Confidence 4678888887654 4444555442 2347999999887666555555442 23577 88899864210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+++|+++.+.+.
T Consensus 81 ~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 81 ILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11468999888664
No 377
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=75.38 E-value=18 Score=29.76 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++.++|-.|++ |.++..+++.+... .+|+.++.+++....+.+.+... ..++. ++.+|+.+...
T Consensus 2 ~~~~ilItGas-~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 2 KDKTAIVTGGG-GGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK------GGNAQ-AFACDITDRDSVDTAVAA 73 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------CCcEE-EEEcCCCCHHHHHHHHHH
Confidence 46778888864 55666666554332 37999999987766665555442 34688 88999864210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
...+.|+++.+.+.
T Consensus 74 ~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 01347988877764
No 378
>PRK07904 short chain dehydrogenase; Provisional
Probab=75.08 E-value=17 Score=30.50 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=52.0
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCCC--CEEEEEeCCHHH-HHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGDK--GHVTAVDHIPQL-INLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-- 224 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-- 224 (254)
.+..+.+||-.|++ |.++..+++.+... .+|+.++.+++. ++.+.+.+... ...+++ ++.+|+.+...
T Consensus 4 ~~~~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~-----~~~~v~-~~~~D~~~~~~~~ 76 (253)
T PRK07904 4 AVGNPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAA-----GASSVE-VIDFDALDTDSHP 76 (253)
T ss_pred ccCCCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhc-----CCCceE-EEEecCCChHHHH
Confidence 34567789999985 55666666654222 389999888764 55555555442 233688 88999863210
Q ss_pred -------CCCCccEEEecCcC
Q psy425 225 -------KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 -------~~~~fD~I~~~~~~ 238 (254)
..+..|+++.+.+.
T Consensus 77 ~~~~~~~~~g~id~li~~ag~ 97 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIVAFGL 97 (253)
T ss_pred HHHHHHHhcCCCCEEEEeeec
Confidence 11468988876655
No 379
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=75.08 E-value=11 Score=32.78 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC---CCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK---NGP 228 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~---~~~ 228 (254)
.+.+||-.| |+|+++..+++.+... .+|+++..++.............+ ...+++ ++.+|+.+...- -..
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~D~~d~~~~~~~~~~ 77 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDG----AKERLK-LFKADLLDEGSFELAIDG 77 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccC----CCCceE-EEeCCCCCchHHHHHHcC
Confidence 367888888 5788888887765333 378777666554333222221110 124688 999999753211 124
Q ss_pred ccEEEecCcC
Q psy425 229 YDVIHFGSGV 238 (254)
Q Consensus 229 fD~I~~~~~~ 238 (254)
.|.|+..++.
T Consensus 78 ~d~vih~A~~ 87 (325)
T PLN02989 78 CETVFHTASP 87 (325)
T ss_pred CCEEEEeCCC
Confidence 7988887764
No 380
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=74.94 E-value=22 Score=29.59 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=48.2
Q ss_pred EEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----------c
Q psy425 156 NVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----------K 224 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----------~ 224 (254)
++|=.|++. .++..+++.+. ...+|+.++.+++.++.+.+.+... .++. ++.+|+.+.. .
T Consensus 2 ~vlItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~-~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASSR-GIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-------GEVY-AVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCce-EEEcCCCCHHHHHHHHHHHHH
Confidence 577788664 45555555543 2347999999988777766665442 2577 8888986321 1
Q ss_pred CCCCccEEEecCcC
Q psy425 225 KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ~~~~fD~I~~~~~~ 238 (254)
..++.|+++.+.+.
T Consensus 73 ~~g~id~li~naG~ 86 (259)
T PRK08340 73 LLGGIDALVWNAGN 86 (259)
T ss_pred hcCCCCEEEECCCC
Confidence 12468999888764
No 381
>PRK07109 short chain dehydrogenase; Provisional
Probab=74.82 E-value=26 Score=30.86 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.+||=.|++ |.++..+++.+. ...+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 7 ~~k~vlITGas-~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~------g~~~~-~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 7 GRQVVVITGAS-AGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA------GGEAL-AVVADVADAEAVQAAADR 78 (334)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEE-EEEecCCCHHHHHHHHHH
Confidence 46788888865 455555555442 2347999999988877766666552 24677 8889987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+...
T Consensus 79 ~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 79 AEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHCCCCCEEEECCCc
Confidence 112468999888764
No 382
>PRK12939 short chain dehydrogenase; Provisional
Probab=74.77 E-value=24 Score=28.94 Aligned_cols=78 Identities=15% Similarity=0.154 Sum_probs=51.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++.++|=.|+ +|.++..+++.+.. ..+|+.++.+++.+....+.++. ...++. +..+|+.+...
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~------~~~~~~-~~~~Dl~~~~~~~~~~~~ 77 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA------AGGRAH-AIAADLADPASVQRFFDA 77 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh------cCCcEE-EEEccCCCHHHHHHHHHH
Confidence 4678887775 56677767665533 23789999888877666555544 224688 88999874221
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (250)
T PRK12939 78 AAAALGGLDGLVNNAGI 94 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 01458998887665
No 383
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.72 E-value=22 Score=29.51 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|+. |.++..+++.+.. ..+|+.++.+++..+.+.+.+... ..++. ++.+|+.+...
T Consensus 6 ~~~~vlItGas-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 6 NGKTAVVTGAA-SGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA------GGKAI-GVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc------CceEE-EEECCCCCHHHHHHHHHH
Confidence 46788877654 5566555554422 337999999998777666666542 23577 88899874221
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|+|+.+.+.
T Consensus 78 ~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 78 VAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHcCCCCEEEECCcc
Confidence 12357988887765
No 384
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=74.67 E-value=11 Score=32.00 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=32.6
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
...++++||=+|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus 117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALS 163 (280)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH
Confidence 345889999998864 5555666666543 248899999888777655
No 385
>PRK07024 short chain dehydrogenase; Provisional
Probab=74.57 E-value=21 Score=29.69 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=48.0
Q ss_pred CEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----------
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---------- 223 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---------- 223 (254)
.+||=.|+ +|.++..+++.+.. ..+|+.++.+++.++...+.+.. ..++. ++.+|+.+..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~-~~~~Dl~~~~~i~~~~~~~~ 73 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVS-VYAADVRDADALAAAAADFI 73 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeE-EEEcCCCCHHHHHHHHHHHH
Confidence 56777886 55566666655533 33899999998776655444322 12688 8899987421
Q ss_pred cCCCCccEEEecCcC
Q psy425 224 KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.+.
T Consensus 74 ~~~g~id~lv~~ag~ 88 (257)
T PRK07024 74 AAHGLPDVVIANAGI 88 (257)
T ss_pred HhCCCCCEEEECCCc
Confidence 112357999988765
No 386
>PRK07102 short chain dehydrogenase; Provisional
Probab=74.52 E-value=21 Score=29.31 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred CEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------CC
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-------KN 226 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-------~~ 226 (254)
++++-.|+ +|.++..+++.+.. ..+|++++.+++-.+...+.+... ...++. ++.+|+.+... ..
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~~~Dl~~~~~~~~~~~~~~ 74 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-----GAVAVS-THELDILDTASHAAFLDSLP 74 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-----cCCeEE-EEecCCCChHHHHHHHHHHh
Confidence 46787774 56666666666533 338999999987665554444332 234788 99999875321 01
Q ss_pred CCccEEEecCcC
Q psy425 227 GPYDVIHFGSGV 238 (254)
Q Consensus 227 ~~fD~I~~~~~~ 238 (254)
..+|.++.+...
T Consensus 75 ~~~d~vv~~ag~ 86 (243)
T PRK07102 75 ALPDIVLIAVGT 86 (243)
T ss_pred hcCCEEEECCcC
Confidence 247998877653
No 387
>PRK09242 tropinone reductase; Provisional
Probab=74.50 E-value=27 Score=28.95 Aligned_cols=80 Identities=14% Similarity=0.084 Sum_probs=50.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.++++|-.|+++| ++..+++.+. ...+|+.++.+++.++...+.+.... ...++. ++.+|+....
T Consensus 8 ~~k~~lItGa~~g-IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~----~~~~~~-~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 8 DGQTALITGASKG-IGLAIAREFLGLGADVLIVARDADALAQARDELAEEF----PEREVH-GLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCCeEE-EEECCCCCHHHHHHHHHH
Confidence 4778999988554 4444454442 23479999998887776666654420 123677 8889986421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|.|+.+.+.
T Consensus 82 ~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 82 VEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 112458999888765
No 388
>PRK06197 short chain dehydrogenase; Provisional
Probab=74.25 E-value=34 Score=29.37 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.+||=.|+ +|.++..+++.+.. ..+|+.+..+++..+.+.+.+.... ...++. ++.+|+.+..
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~----~~~~~~-~~~~Dl~d~~~v~~~~~~ 88 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT----PGADVT-LQELDLTSLASVRAAADA 88 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceE-EEECCCCCHHHHHHHHHH
Confidence 5678888886 45566666665433 2378899888877666555554321 124678 8889987432
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+.+|+++.+.+.
T Consensus 89 ~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 89 LRAAYPRIDLLINNAGV 105 (306)
T ss_pred HHhhCCCCCEEEECCcc
Confidence 012358999988765
No 389
>PRK06181 short chain dehydrogenase; Provisional
Probab=74.19 E-value=20 Score=29.88 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=48.0
Q ss_pred CEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---------
Q psy425 155 ANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK--------- 224 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~--------- 224 (254)
.+||-.|+ +|.++..+++.+. ...+|++++.++...+...+.+... ..++. +..+|+.+...
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~Dl~~~~~~~~~~~~~~ 73 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEAL-VVPTDVSDAEACERLIEAAV 73 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEccCCCHHHHHHHHHHHH
Confidence 46777774 5566666665442 2348999999987666555555442 23677 88889864221
Q ss_pred -CCCCccEEEecCcC
Q psy425 225 -KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 -~~~~fD~I~~~~~~ 238 (254)
..+..|.|+.+.+.
T Consensus 74 ~~~~~id~vi~~ag~ 88 (263)
T PRK06181 74 ARFGGIDILVNNAGI 88 (263)
T ss_pred HHcCCCCEEEECCCc
Confidence 11357999888765
No 390
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=74.13 E-value=11 Score=33.25 Aligned_cols=45 Identities=27% Similarity=0.369 Sum_probs=35.9
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++.+||=.|+|. |..+..+|+..+. +|++++.+++.++.+++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH
Confidence 577899999999965 6666777777654 79999999998887754
No 391
>PRK05650 short chain dehydrogenase; Provisional
Probab=74.02 E-value=19 Score=30.22 Aligned_cols=75 Identities=19% Similarity=0.037 Sum_probs=47.5
Q ss_pred EEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc----------
Q psy425 156 NVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---------- 224 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---------- 224 (254)
+||-.|+ +|.++..+++.+.. ..+|+.++.+++.++.+.+.+... ..++. +..+|+.+...
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~~i~~ 73 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA------GGDGF-YQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceE-EEEccCCCHHHHHHHHHHHHH
Confidence 5777775 45555555555432 337999999887766665555442 24677 88889864211
Q ss_pred CCCCccEEEecCcC
Q psy425 225 KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ~~~~fD~I~~~~~~ 238 (254)
..+++|.++.+.+.
T Consensus 74 ~~~~id~lI~~ag~ 87 (270)
T PRK05650 74 KWGGIDVIVNNAGV 87 (270)
T ss_pred HcCCCCEEEECCCC
Confidence 12458999888765
No 392
>KOG2912|consensus
Probab=73.93 E-value=9.2 Score=33.71 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=49.1
Q ss_pred EEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCC-----CCC--cCCCCc
Q psy425 157 VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR-----KPY--KKNGPY 229 (254)
Q Consensus 157 VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~-----~~~--~~~~~f 229 (254)
-+|||.|.-.+--.+.... .+....++|++.-.+..|++|..+++ ....+. +++.+.. +.. ..+..|
T Consensus 106 GiDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~----lss~ik-vV~~~~~ktll~d~~~~~~e~~y 179 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNN----LSSLIK-VVKVEPQKTLLMDALKEESEIIY 179 (419)
T ss_pred eeeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccc----ccccee-eEEecchhhcchhhhccCcccee
Confidence 4799888766544333222 23578999999999999999998875 445565 5554322 111 112348
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|...++..|
T Consensus 180 dFcMcNPPF 188 (419)
T KOG2912|consen 180 DFCMCNPPF 188 (419)
T ss_pred eEEecCCch
Confidence 888888665
No 393
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=73.55 E-value=21 Score=29.31 Aligned_cols=78 Identities=17% Similarity=0.097 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.+||-.|+ +|.++..+++.+.. ..+|++++-+++.+....+.+... ..++. +..+|+.+...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA------GGKAR-ARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEECCCCCHHHHHHHHHH
Confidence 4568887775 56666666655422 237999999877665555555442 24588 88899874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+++|.|+.+.+.
T Consensus 77 ~~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 77 GVEDFGRLDILVANAGI 93 (251)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 11357988888755
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=73.52 E-value=21 Score=29.68 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.+||-.|+++| ++..+++.+ ....+++.++.+++.++.....+... ..++. ++.+|+.+...
T Consensus 10 ~~k~vlVtG~s~g-IG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 10 DGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAF-ACRCDITSEQELSALADF 81 (255)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEccCCCHHHHHHHHHH
Confidence 4789999996544 555455443 22347888998887776665555442 23577 88888874321
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+.+|.|+.+.+.
T Consensus 82 ~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 82 ALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12457999888765
No 395
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.38 E-value=12 Score=31.30 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCCEEEEEcCC-CChHHHHHHHHcCC-CCEEEEEeCCH--HHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----
Q psy425 153 PGANVLDLGFG-SGFMSCCMARMVGD-KGHVTAVDHIP--QLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----- 223 (254)
Q Consensus 153 ~~~~VLDiG~G-~G~~t~~la~~~~~-~~~v~gvD~s~--~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----- 223 (254)
.+.++|-.|+| ++.++..+++.+.. ..+|+.++.+. +.++...+.+ ..++. ++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---------~~~~~-~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---------PEPAP-VLELDVTNEEHLASL 75 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---------CCCCc-EEeCCCCCHHHHHHH
Confidence 46789999985 56677777766533 33788887653 3333322221 12566 7888887421
Q ss_pred -----cCCCCccEEEecCcC
Q psy425 224 -----KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -----~~~~~fD~I~~~~~~ 238 (254)
...+.+|+++.+.++
T Consensus 76 ~~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHHcCCCcEEEEcccc
Confidence 112568999888765
No 396
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.97 E-value=20 Score=29.59 Aligned_cols=76 Identities=16% Similarity=0.106 Sum_probs=47.4
Q ss_pred CEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc----CCCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK----KNGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~----~~~~f 229 (254)
.++|-.|++ |.++..+++.+. ...+|+++..++...+..++..... ..++. ++.+|+.+... .....
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~~i 74 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALR-VEKLDLTDAIDRAQAAEWDV 74 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcce-EEEeeCCCHHHHHHHhcCCC
Confidence 468888874 555555555442 2347999988877665555444432 23577 88899874321 12358
Q ss_pred cEEEecCcC
Q psy425 230 DVIHFGSGV 238 (254)
Q Consensus 230 D~I~~~~~~ 238 (254)
|.|+.+.+.
T Consensus 75 d~vi~~ag~ 83 (257)
T PRK09291 75 DVLLNNAGI 83 (257)
T ss_pred CEEEECCCc
Confidence 999988764
No 397
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=72.83 E-value=35 Score=28.21 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|++ |.++..+++.+.. ..+|+.++.+++.+....+.+... ..++. ++.+|+.+..
T Consensus 8 ~~k~~lItGas-~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 8 AGKNILITGSA-QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAH-AAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCeEE-EEecCCCCHHHHHHHHHH
Confidence 46788888855 5555555555432 348999999887766665555442 23566 7788886421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|.|+.+.+.
T Consensus 80 ~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 80 IEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHhcCCCCEEEECCCc
Confidence 112458999988765
No 398
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=72.71 E-value=34 Score=28.30 Aligned_cols=78 Identities=18% Similarity=0.190 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+++||=.|+ +|.++..+++.+.. ..+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAH-ALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEE-EEEccCCCHHHHHHHHHH
Confidence 5788999985 66777777766532 348999999988776665555442 23577 8888887421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|.|+.+.+.
T Consensus 81 ~~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 81 FEAEIGPIDILVNNAGM 97 (255)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112457999888765
No 399
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=72.53 E-value=24 Score=29.48 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|+++| ++..+++.+.. ..+|+.++.+++.++...+.+ ..++. ++.+|+.+..
T Consensus 5 ~~k~vlVtGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~-~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 5 HGQVALITGGGSG-IGRALVERFLAEGARVAVLERSAEKLASLRQRF---------GDHVL-VVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCcce-EEEccCCCHHHHHHHHHH
Confidence 4678999997544 45555554422 337999999887665543332 23577 8888886421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.++
T Consensus 74 ~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112458999888765
No 400
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=72.35 E-value=31 Score=29.92 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----c--
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-----K-- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-----~-- 224 (254)
.+.++|-.|+. |.++..+++.+.. ..+|+.++.+++..+.+.+.+.. ...++. ++.+|+.+.. .
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~------~~~~~~-~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGI------PPDSYT-IIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc------cCCceE-EEEecCCCHHHHHHHHHH
Confidence 46788888865 5555555554432 34799999888766655554432 123678 8889986321 0
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
...+.|+++.+++.
T Consensus 77 ~~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 77 FRALGKPLDALVCNAAV 93 (322)
T ss_pred HHHhCCCccEEEECCcc
Confidence 12358999988764
No 401
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.10 E-value=49 Score=30.65 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHH-HHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCcc
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQ-LINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYD 230 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~-~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD 230 (254)
.+.+|+=+|+|. |.-+..++...+ .+|+++|.++. ......+.+.+. .++ +..++... ....+|
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~~~~~~~~~~l~~~--------gv~-~~~~~~~~---~~~~~D 80 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDDERHRALAAILEAL--------GAT-VRLGPGPT---LPEDTD 80 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhhHHHHHHHHHc--------CCE-EEECCCcc---ccCCCC
Confidence 467899999874 332222222222 27999996653 333333444442 466 76655332 122489
Q ss_pred EEEecCcCc
Q psy425 231 VIHFGSGVK 239 (254)
Q Consensus 231 ~I~~~~~~~ 239 (254)
+|+.+.++.
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 998887774
No 402
>PLN02740 Alcohol dehydrogenase-like
Probab=71.98 E-value=12 Score=33.58 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=34.4
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+++|++||=+|+|. |..+..+|+..+. .+|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHH
Confidence 678899999999864 5555666666542 259999999998888755
No 403
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=71.88 E-value=12 Score=32.59 Aligned_cols=46 Identities=28% Similarity=0.412 Sum_probs=33.1
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++++||=+|+|. |..+..+++..+.+ +|++++.+++..+.+++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~-~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAE-DVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHHH
Confidence 567899999998753 44555666665541 39999999988777654
No 404
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=71.80 E-value=9.2 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.374 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHcCCcCcHHHHHHHHhccccccc
Q psy425 7 TSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFA 40 (254)
Q Consensus 7 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~r~~f~ 40 (254)
-+++++++..+.+|. +..|.+++..+|...|.
T Consensus 8 a~k~~Lv~~A~~~gA--~~~vl~~L~~lP~~~Y~ 39 (44)
T PF11387_consen 8 ADKDELVRHARRNGA--PDDVLDALERLPDREYE 39 (44)
T ss_pred CCHHHHHHHHHHcCC--CHHHHHHHHHCCccCCC
Confidence 467899999999996 55899999999966553
No 405
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.69 E-value=26 Score=28.68 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|-.|+ +|.++..+++.+. ...+|+.++.+++..+.....+... ..++. ++.+|+.....
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVV-IATADVSDYEEVTAAIEQ 77 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEE-EEECCCCCHHHHHHHHHH
Confidence 3567888885 6777777776542 2348999999887665554444432 24687 88899864211
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+..|.|+.+...
T Consensus 78 ~~~~~~~id~vi~~ag~ 94 (239)
T PRK07666 78 LKNELGSIDILINNAGI 94 (239)
T ss_pred HHHHcCCccEEEEcCcc
Confidence 11357999887655
No 406
>PRK07791 short chain dehydrogenase; Provisional
Probab=71.37 E-value=33 Score=29.32 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCH---------HHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIP---------QLINLFMTKLKISYPKLYKLYKIMDVVEWDARKP 222 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~---------~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~ 222 (254)
.+.++|-.|+++|. +..+++.+ ....+|+.++.+. +.++.+.+.+... ..++. ++.+|+.+.
T Consensus 5 ~~k~~lITGas~GI-G~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~-~~~~Dv~~~ 76 (286)
T PRK07791 5 DGRVVIVTGAGGGI-GRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA------GGEAV-ANGDDIADW 76 (286)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc------CCceE-EEeCCCCCH
Confidence 57889999977654 44444443 2234788887764 4444444444332 23577 788888642
Q ss_pred C----------cCCCCccEEEecCcC
Q psy425 223 Y----------KKNGPYDVIHFGSGV 238 (254)
Q Consensus 223 ~----------~~~~~fD~I~~~~~~ 238 (254)
. ...++.|.++.+.++
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 77 DGAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 1 112568999988765
No 407
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=71.31 E-value=5.2 Score=37.28 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=47.8
Q ss_pred CEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHH----HHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC-CCCc
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ----LINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK-NGPY 229 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~----~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~-~~~f 229 (254)
..|+|+.+|.|.++++|... + |..+.+-|. .+...-++ + .- =...|..+.+.. ...|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIydR---------G---LI-G~yhDWCE~fsTYPRTY 428 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIYDR---------G---LI-GVYHDWCEAFSTYPRTY 428 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhhhc---------c---cc-hhccchhhccCCCCcch
Confidence 48999999999998888644 3 444443333 22221111 1 11 122344444432 3469
Q ss_pred cEEEecCcCc------CchHHHHHHHHhhcC
Q psy425 230 DVIHFGSGVK------HIPIEVSKLCRSQKK 254 (254)
Q Consensus 230 D~I~~~~~~~------~~~~~l~~~lr~lk~ 254 (254)
|+|.++..|. .+.+-++|+=|.|+|
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP 459 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRP 459 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCC
Confidence 9999998884 344556777677764
No 408
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.14 E-value=19 Score=30.07 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|-.|.++ +.++..+++.+.. ..+|+.++.++...+. +.+. ...++. ++.+|+.+..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~~-----~~~~~~-~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQKL-----VDEEDL-LVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHhh-----ccCcee-EEeCCCCCHHHHHHHHH
Confidence 577899999874 5666666666533 3478888776432222 2221 123577 8888987421
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+.+.
T Consensus 76 ~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 76 TIKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHHhCCCCEEEEcccc
Confidence 112468999888765
No 409
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.93 E-value=27 Score=29.47 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCC-hHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGSG-FMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G-~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|=.|+++| .++..+++.+.. ..+|+.++.+....+.+.+ +... ...+. ++.+|+.+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~------~~~~~-~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQ------LGSDI-VLPCDVAEDASIDAMFA 76 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhc------cCCce-EeecCCCCHHHHHHHHH
Confidence 4678999999863 666666665532 2378878776432233322 2221 12456 7778886421
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+.++
T Consensus 77 ~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred HHHhhcCCCCEEEECCcc
Confidence 112468999988865
No 410
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=70.92 E-value=8 Score=34.84 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
++.+|+=+|+|. |..+...+...+. +|+.+|.+++.++.+..
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQLDA 208 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH
Confidence 356799998873 5555555555554 79999999887655444
No 411
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=70.49 E-value=35 Score=28.23 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|+ +|.++..+++.+. ...+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------GGAAE-ALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------CCceE-EEEccCCCHHHHHHHHHH
Confidence 5788998886 4555665555442 2348999999987776666655542 23577 8888987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|.|+.+.+.
T Consensus 82 ~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 82 IDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHhcCCCCEEEECCCC
Confidence 112457888887665
No 412
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=70.43 E-value=18 Score=29.79 Aligned_cols=45 Identities=31% Similarity=0.508 Sum_probs=34.2
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++.+||..|+|+ |.....+++..+. +|++++.+++..+.+++
T Consensus 131 ~~~~~~~vli~g~~~~G~~~~~~a~~~g~--~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 131 VLKPGDTVLVLGAGGVGLLAAQLAKAAGA--RVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH
Confidence 347899999999986 5566666766553 79999999887776644
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=70.41 E-value=9.9 Score=34.83 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 152 LPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 152 ~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+|++|+=+|+|. |.....+++..+. +|+.+|.++..+..|++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHh
Confidence 4799999999996 6666666666554 79999999988776654
No 414
>KOG1371|consensus
Probab=70.38 E-value=9.5 Score=33.66 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCChHHHHHH-HHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----cCCC
Q psy425 154 GANVLDLGFGSGFMSCCMA-RMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-----KKNG 227 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la-~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-----~~~~ 227 (254)
+.+||-.| |.|+++-+-+ ++....-.|+++|-=-.....+-++.++.- .....|. |..+|+.+.. +...
T Consensus 2 ~~~VLVtG-gaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~---~~~~~v~-f~~~Dl~D~~~L~kvF~~~ 76 (343)
T KOG1371|consen 2 GKHVLVTG-GAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLL---GEGKSVF-FVEGDLNDAEALEKLFSEV 76 (343)
T ss_pred CcEEEEec-CCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhc---CCCCceE-EEEeccCCHHHHHHHHhhc
Confidence 35677666 4555442222 222222369999875555555555544421 0125799 9999998432 3345
Q ss_pred CccEEEecCcCcCchHHH
Q psy425 228 PYDVIHFGSGVKHIPIEV 245 (254)
Q Consensus 228 ~fD~I~~~~~~~~~~~~l 245 (254)
+||.|+-.++...+.+.+
T Consensus 77 ~fd~V~Hfa~~~~vgeS~ 94 (343)
T KOG1371|consen 77 KFDAVMHFAALAAVGESM 94 (343)
T ss_pred CCceEEeehhhhccchhh
Confidence 699999888886655543
No 415
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.36 E-value=31 Score=28.31 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=+|+. |.++..+++.+.. ..+|++++.+++.++.....+.. ..++. +..+|+.+...
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~-~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAI-AVAADVSDEADVEAAVAA 74 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEE-EEECCCCCHHHHHHHHHH
Confidence 45678888865 4555555554422 23799999998776655554432 13577 88899874221
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
....+|+|+.+.+.
T Consensus 75 ~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 75 ALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 12357999888765
No 416
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=69.57 E-value=4.5 Score=36.09 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
..++||+|.|.|....++-..+..--.++-+|.|+..-+..-.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t 156 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT 156 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH
Confidence 4679999999998776665555322357888988876555444
No 417
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=69.52 E-value=52 Score=27.03 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.+||=.|. +|.++..+++.+... .+|++++.+++..+.....+... ..++. ++.+|+.+...
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA------GGKAI-GVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEE-EEEcCCCCHHHHHHHHHH
Confidence 3567887765 577777777765333 37999999988776665555442 34688 88899874221
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+.+|+|+.+.+.
T Consensus 75 ~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 75 AVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11358999887754
No 418
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=69.41 E-value=20 Score=31.94 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=34.5
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.++++++||=.|+|. |..+..+|+..+. .+|+++|.+++.++.+++
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 577899999999864 5566666766542 269999999998887754
No 419
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=69.16 E-value=15 Score=32.42 Aligned_cols=77 Identities=17% Similarity=0.103 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----cCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-----KKN 226 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-----~~~ 226 (254)
.+++||-.| |+|+++..+++.+-.. .+|++++.++.........+.. ..+++ ++.+|+.+.. ...
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~-~~~~Dl~~~~~~~~~~~~ 73 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL-------AKKIE-DHFGDIRDAAKLRKAIAE 73 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh-------cCCce-EEEccCCCHHHHHHHHhh
Confidence 467888888 5677777777765332 3799998776533222121111 23577 8888887422 112
Q ss_pred CCccEEEecCcC
Q psy425 227 GPYDVIHFGSGV 238 (254)
Q Consensus 227 ~~fD~I~~~~~~ 238 (254)
..+|.|+...+.
T Consensus 74 ~~~d~vih~A~~ 85 (349)
T TIGR02622 74 FKPEIVFHLAAQ 85 (349)
T ss_pred cCCCEEEECCcc
Confidence 247988877764
No 420
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.08 E-value=26 Score=28.66 Aligned_cols=76 Identities=22% Similarity=0.134 Sum_probs=46.7
Q ss_pred cCCCCCEEEEEcCC-CChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCC
Q psy425 150 KLLPGANVLDLGFG-SGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGP 228 (254)
Q Consensus 150 ~~~~~~~VLDiG~G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~ 228 (254)
....+.++|-+|+= +|.. .|+++....+|+.+|++|.+-.. ...+|+ |... . .+..+.
T Consensus 41 ~~~E~~~vli~G~YltG~~---~a~~Ls~~~~vtv~Di~p~~r~~-------------lp~~v~-Fr~~--~--~~~~G~ 99 (254)
T COG4017 41 EGEEFKEVLIFGVYLTGNY---TAQMLSKADKVTVVDIHPFMRGF-------------LPNNVK-FRNL--L--KFIRGE 99 (254)
T ss_pred cccCcceEEEEEeeehhHH---HHHHhcccceEEEecCCHHHHhc-------------CCCCcc-Hhhh--c--CCCCCc
Confidence 34578899999974 3444 45554334479999999986433 234566 6554 1 223455
Q ss_pred ccEEEecCcCcCchHHHH
Q psy425 229 YDVIHFGSGVKHIPIEVS 246 (254)
Q Consensus 229 fD~I~~~~~~~~~~~~l~ 246 (254)
+|+|+=--++-.+.+.++
T Consensus 100 ~DlivDlTGlGG~~Pe~L 117 (254)
T COG4017 100 VDLIVDLTGLGGIEPEFL 117 (254)
T ss_pred eeEEEeccccCCCCHHHH
Confidence 888877666655555443
No 421
>KOG1209|consensus
Probab=69.07 E-value=26 Score=29.36 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCC-EEEEEeCCHHH-HHHHHHHHHhhCCCcccCCCeeEEEEcCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQL-INLFMTKLKISYPKLYKLYKIMDVVEWDARKP-------- 222 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~-~v~gvD~s~~~-l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~-------- 222 (254)
....||-.||.+|.++..+++.+..+| .|++.--+-+. -+.+.+ . .+. ....|+..+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~--------gl~-~~kLDV~~~~~V~~v~~ 72 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----F--------GLK-PYKLDVSKPEEVVTVSG 72 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----h--------CCe-eEEeccCChHHHHHHHH
Confidence 457899999999999999998875554 78877554332 222211 1 244 444555421
Q ss_pred ---CcCCCCccEEEecCcCc
Q psy425 223 ---YKKNGPYDVIHFGSGVK 239 (254)
Q Consensus 223 ---~~~~~~fD~I~~~~~~~ 239 (254)
..++++.|+.+.+++..
T Consensus 73 evr~~~~Gkld~L~NNAG~~ 92 (289)
T KOG1209|consen 73 EVRANPDGKLDLLYNNAGQS 92 (289)
T ss_pred HHhhCCCCceEEEEcCCCCC
Confidence 12456788888877653
No 422
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=68.73 E-value=19 Score=32.09 Aligned_cols=55 Identities=29% Similarity=0.434 Sum_probs=42.0
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
....+..+ .+++|+.|.-+|||. |..++.-|...+ -.+++++|++++.++.|++-
T Consensus 174 ~Gav~nta--~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 174 IGAVVNTA--KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred hHHhhhcc--cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc
Confidence 34445555 788999999999986 555566566654 35899999999999998774
No 423
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.49 E-value=39 Score=28.74 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|=.|+++ +.++..+++.+.. ..+|+.++.++...+.+.+...+. . .. . ++.+|+.+..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~-----~-~~-~-~~~~Dv~d~~~v~~~~~ 75 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQEL-----G-SD-Y-VYELDVSKPEHFKSLAE 75 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc-----C-Cc-e-EEEecCCCHHHHHHHHH
Confidence 467899999863 4566666665533 237888888754333333332331 1 12 5 6778887421
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+.++
T Consensus 76 ~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 76 SLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHHcCCCCEEEECCcc
Confidence 113568999988775
No 424
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.07 E-value=30 Score=29.00 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=46.9
Q ss_pred CCCEEEEEcC-CCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGF-GSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~-G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.+..+|=.|+ |++.++..+++.+... .+|+.+..+....+.+++.... ..... .+.+|+.+..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~Dv~~~~~v~~~~~ 76 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAE-------LDSEL-VFRCDVASDDEINQVFA 76 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhc-------cCCce-EEECCCCCHHHHHHHHH
Confidence 5678999997 4667777777765433 3777776554333333333222 12345 6778887421
Q ss_pred ---cCCCCccEEEecCcCc
Q psy425 224 ---KKNGPYDVIHFGSGVK 239 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~~ 239 (254)
...++.|+++.+.++.
T Consensus 77 ~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 77 DLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHHhCCCcEEEECCccC
Confidence 1124689999988663
No 425
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=68.00 E-value=24 Score=30.39 Aligned_cols=80 Identities=13% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC---CCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK---NGP 228 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~---~~~ 228 (254)
.+.+||=.|+ +|+++..+++.+-..+ +|++++.++.............+ ...+++ ++.+|+.+...- -..
T Consensus 3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~Dl~~~~~~~~~~~~ 76 (322)
T PLN02662 3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDG----AKERLH-LFKANLLEEGSFDSVVDG 76 (322)
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccC----CCCceE-EEeccccCcchHHHHHcC
Confidence 3567887775 7888888887763333 78888776543222222111100 124788 999999753211 124
Q ss_pred ccEEEecCcC
Q psy425 229 YDVIHFGSGV 238 (254)
Q Consensus 229 fD~I~~~~~~ 238 (254)
+|.|+..++.
T Consensus 77 ~d~Vih~A~~ 86 (322)
T PLN02662 77 CEGVFHTASP 86 (322)
T ss_pred CCEEEEeCCc
Confidence 7988777653
No 426
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=67.92 E-value=17 Score=32.18 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++++||=.|+|. |..+..+|+..+. .+|+++|.+++..+.+++
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 567899999998754 5555666766542 249999999998888754
No 427
>PRK08267 short chain dehydrogenase; Provisional
Probab=67.79 E-value=32 Score=28.62 Aligned_cols=74 Identities=15% Similarity=0.099 Sum_probs=46.9
Q ss_pred CEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----------
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---------- 223 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---------- 223 (254)
+++|-.|++ |.++..+++.+.. ..+|+.++.+++.++...+... ..++. ++.+|+.+..
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~-~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--------AGNAW-TGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--------CCceE-EEEecCCCHHHHHHHHHHHH
Confidence 357778865 5555555554422 3379999998877665544332 23678 8899987421
Q ss_pred cC-CCCccEEEecCcC
Q psy425 224 KK-NGPYDVIHFGSGV 238 (254)
Q Consensus 224 ~~-~~~fD~I~~~~~~ 238 (254)
.. .+++|.|+.+.+.
T Consensus 72 ~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 72 AATGGRLDVLFNNAGI 87 (260)
T ss_pred HHcCCCCCEEEECCCC
Confidence 00 3468999888765
No 428
>PRK05872 short chain dehydrogenase; Provisional
Probab=67.72 E-value=37 Score=29.10 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|+++ .++..+++.+.. ..+|+.++.+++.++...+.+.. ...+. .+.+|+.+..
T Consensus 8 ~gk~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~-~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 8 AGKVVVVTGAAR-GIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVL-TVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEE-EEEecCCCHHHHHHHHHH
Confidence 577899888654 455555555432 34899999998876655444321 12455 5668876421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|+|+.+.+.
T Consensus 79 ~~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 79 AVERFGGIDVVVANAGI 95 (296)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 112468999998875
No 429
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=67.57 E-value=37 Score=27.84 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|+++ .++..+++.+... .+|+.++.++. ..+.+.+... ..++. ++.+|+.+...
T Consensus 4 ~~k~vlItGas~-gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 4 EGKVALVTGANT-GLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL------GRRFL-SLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc------CCceE-EEECCCCCHHHHHHHHHH
Confidence 467899999864 4566666655333 37888887642 2333333331 23577 88899874211
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 74 ~~~~~~~~d~li~~ag~ 90 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGI 90 (248)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12458999888765
No 430
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=67.54 E-value=46 Score=27.33 Aligned_cols=76 Identities=13% Similarity=0.052 Sum_probs=49.2
Q ss_pred CEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----------
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY---------- 223 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~---------- 223 (254)
.++|=.| |+|.++..+++.+.. ..+|++++.+++..+.....+... ..++. ++.+|+.+..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~~~ 73 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVI-YLVADVTKEDEIADMIAAAA 73 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceE-EEECCCCCHHHHHHHHHHHH
Confidence 4577777 557777777766532 337999999887766665554432 24688 8889987432
Q ss_pred cCCCCccEEEecCcC
Q psy425 224 KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ~~~~~fD~I~~~~~~ 238 (254)
....+.|.|+.+.+.
T Consensus 74 ~~~~~~d~vi~~a~~ 88 (255)
T TIGR01963 74 AEFGGLDILVNNAGI 88 (255)
T ss_pred HhcCCCCEEEECCCC
Confidence 112347988887755
No 431
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=67.52 E-value=23 Score=29.35 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.| |+|.++..+++.+... .+|+.++.+++.++...+.. ..++. ++.+|+.+...
T Consensus 5 ~~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~---------~~~~~-~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 5 QGKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI---------GPAAI-AVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh---------CCceE-EEEccCCCHHHHHHHHHH
Confidence 356788888 4566666677665333 38999999887665544332 23577 88888864211
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.++.+.+.
T Consensus 74 ~~~~~~~id~li~~ag~ 90 (257)
T PRK07067 74 AVERFGGIDILFNNAAL 90 (257)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12357988887654
No 432
>PRK05875 short chain dehydrogenase; Provisional
Probab=67.51 E-value=33 Score=28.78 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK------ 225 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~------ 225 (254)
++.++|-.|++ |.++..+++.+.. ..+|++++.+++..+...+.+...+ ...++. ++.+|+.+....
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~-~~~~Dl~~~~~~~~~~~~ 79 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALK----GAGAVR-YEPADVTDEDQVARAVDA 79 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcc----CCCceE-EEEcCCCCHHHHHHHHHH
Confidence 46789999865 5566666665432 2379999988776655544443311 124678 888998743210
Q ss_pred ----CCCccEEEecCc
Q psy425 226 ----NGPYDVIHFGSG 237 (254)
Q Consensus 226 ----~~~fD~I~~~~~ 237 (254)
.++.|.|+.+.+
T Consensus 80 ~~~~~~~~d~li~~ag 95 (276)
T PRK05875 80 ATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHcCCCCEEEECCC
Confidence 135799988765
No 433
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=66.98 E-value=14 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCCCEEEEEcCCCChH-HHHHHHHcCCCCEEEEEeCC
Q psy425 151 LLPGANVLDLGFGSGFM-SCCMARMVGDKGHVTAVDHI 187 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~-t~~la~~~~~~~~v~gvD~s 187 (254)
+...++||-|||-+|+- +..++..++..+..+||-+.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 33458999999999984 44556666666677877654
No 434
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=66.97 E-value=25 Score=30.97 Aligned_cols=78 Identities=13% Similarity=0.128 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCCChHHHHHHHHcCCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---CCC
Q psy425 152 LPGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---KNG 227 (254)
Q Consensus 152 ~~~~~VLDiG~G~G~~t~~la~~~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---~~~ 227 (254)
..+.+||=.|. +|+++..+++.+...+ +|++++.++.........+. ...+++ ++.+|+.+... ...
T Consensus 8 ~~~~~vLVtG~-~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~~~~-~~~~Dl~~~~~~~~~~~ 78 (353)
T PLN02896 8 SATGTYCVTGA-TGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWK-------EGDRLR-LFRADLQEEGSFDEAVK 78 (353)
T ss_pred cCCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhc-------cCCeEE-EEECCCCCHHHHHHHHc
Confidence 45778998884 7888888887664333 79988877654332222211 124688 89999874311 112
Q ss_pred CccEEEecCcC
Q psy425 228 PYDVIHFGSGV 238 (254)
Q Consensus 228 ~fD~I~~~~~~ 238 (254)
.+|.|+..++.
T Consensus 79 ~~d~Vih~A~~ 89 (353)
T PLN02896 79 GCDGVFHVAAS 89 (353)
T ss_pred CCCEEEECCcc
Confidence 47988877765
No 435
>PRK05855 short chain dehydrogenase; Validated
Probab=66.79 E-value=39 Score=31.66 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC---------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY--------- 223 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~--------- 223 (254)
+.++|=+|+ +|.++..+++.+.. ..+|+.++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dv~~~~~~~~~~~~~ 386 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA------GAVAH-AYRVDVSDADAMEAFAEWV 386 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEE-EEEcCCCCHHHHHHHHHHH
Confidence 467887876 55566656655533 337999999988776666655542 23678 8899997432
Q ss_pred -cCCCCccEEEecCcC
Q psy425 224 -KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.+.
T Consensus 387 ~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 387 RAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHhcCCCcEEEECCcc
Confidence 112458999998876
No 436
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.75 E-value=19 Score=31.98 Aligned_cols=46 Identities=28% Similarity=0.360 Sum_probs=33.8
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.++++++||=.|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH
Confidence 577899999999764 5555666666542 259999999998887755
No 437
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.70 E-value=33 Score=28.75 Aligned_cols=80 Identities=9% Similarity=0.036 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|-.|+++ +.++..+++.+.. ..+|+.++.+....+..++...+. ...++. ++.+|+.+..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTL-----EGQESL-LLPCDVTSDEEITACFE 79 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHc-----CCCceE-EEecCCCCHHHHHHHHH
Confidence 468899999873 6677777766543 337887765422112222222221 123677 8888987421
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+..+
T Consensus 80 ~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHHhCCCccEEEECccc
Confidence 112568998877654
No 438
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=66.45 E-value=37 Score=27.56 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++.+||=.|+ +|.++..+++.+... .+|++++-++...+.....+... ..++. ++.+|+.+...
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA------GGEAR-VLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc------CCceE-EEEccCCCHHHHHHHHHH
Confidence 3568888886 777877777665332 26999999887766555444432 24577 88899874320
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
...+.|.|+.+.+.
T Consensus 76 ~~~~~~~id~vi~~ag~ 92 (246)
T PRK05653 76 AVEAFGALDILVNNAGI 92 (246)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 01346888877654
No 439
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=66.28 E-value=43 Score=27.79 Aligned_cols=76 Identities=14% Similarity=0.136 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.++++|-.|+++| ++..+++.+. ...+|+.++.++. +...+.++. ...++. ++.+|+.+..
T Consensus 7 ~~k~~lItGas~g-IG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~------~~~~~~-~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 7 NGKVAIITGCNTG-LGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEA------LGRKFH-FITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHH------cCCeEE-EEEeCCCCHHHHHHHHHH
Confidence 5788999997654 5555555442 3347888876532 223333333 124677 8889987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...++.|+++.+...
T Consensus 77 ~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 77 AVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 112468999888765
No 440
>PRK05717 oxidoreductase; Validated
Probab=65.96 E-value=35 Score=28.29 Aligned_cols=76 Identities=12% Similarity=0.012 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|-.|++ |.++..+++.+. ...+|+.++.++.......+ . ...++. ++.+|+.+...
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~------~~~~~~-~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---A------LGENAW-FIAMDVADEAQVAAGVAE 77 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---H------cCCceE-EEEccCCCHHHHHHHHHH
Confidence 46788988864 556666666553 23489999988764433222 2 123577 88999874210
Q ss_pred ---CCCCccEEEecCcCc
Q psy425 225 ---KNGPYDVIHFGSGVK 239 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~~ 239 (254)
..+++|.++.+.+..
T Consensus 78 ~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 78 VLGQFGRLDALVCNAAIA 95 (255)
T ss_pred HHHHhCCCCEEEECCCcc
Confidence 123579998887763
No 441
>PRK08265 short chain dehydrogenase; Provisional
Probab=65.65 E-value=38 Score=28.26 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|-.|++ |.++..+++.+.. ..+|+.++.+++.++...+.+ ..++. ++.+|+.+..
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~-~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERAR-FIATDITDDAAIERAVAT 73 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeE-EEEecCCCHHHHHHHHHH
Confidence 46788888864 4555555555432 338999999876544433321 23577 8889987421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+..|.++.+.+.
T Consensus 74 ~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 112357998887664
No 442
>PRK06196 oxidoreductase; Provisional
Probab=65.55 E-value=50 Score=28.54 Aligned_cols=74 Identities=16% Similarity=0.153 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.+||=.|++ |.++..+++.+.. ..+|++++.+++..+.+.+.+ .++. ++.+|+.+..
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l----------~~v~-~~~~Dl~d~~~v~~~~~~ 92 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI----------DGVE-VVMLDLADLESVRAFAER 92 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------hhCe-EEEccCCCHHHHHHHHHH
Confidence 46789988865 5566666665533 237999999887655443332 1367 8888887421
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.+.
T Consensus 93 ~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 93 FLDSGRRIDILINNAGV 109 (315)
T ss_pred HHhcCCCCCEEEECCCC
Confidence 112458999988765
No 443
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=65.30 E-value=46 Score=27.52 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-------- 224 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-------- 224 (254)
+.+||-.|+ +|.++..+++.+.. ..+|+.++.++...+...+.+.... ...++. ++.+|+.+...
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~-~~~~D~~~~~~i~~~~~~~ 75 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAY-GFGADATSEQSVLALSRGV 75 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCceeE-EEEccCCCHHHHHHHHHHH
Confidence 357888885 56666666655532 3489999998876655544443310 123577 88899874210
Q ss_pred --CCCCccEEEecCcC
Q psy425 225 --KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 --~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 76 ~~~~~~id~vv~~ag~ 91 (259)
T PRK12384 76 DEIFGRVDLLVYNAGI 91 (259)
T ss_pred HHHcCCCCEEEECCCc
Confidence 11457998887764
No 444
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=64.74 E-value=35 Score=32.69 Aligned_cols=87 Identities=18% Similarity=0.077 Sum_probs=52.1
Q ss_pred cCCCCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCC---CcccCCCeeEEEEcCCCCCCc-
Q psy425 150 KLLPGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYP---KLYKLYKIMDVVEWDARKPYK- 224 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~~~~~~v~~~~~~d~~~~~~- 224 (254)
+...|..||-.|+ +|+++..+++.+.. ..+|++++.+++.+....+.+....- ......++. ++.+|+.+...
T Consensus 76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~-iV~gDLtD~esI 153 (576)
T PLN03209 76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLE-IVECDLEKPDQI 153 (576)
T ss_pred ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceE-EEEecCCCHHHH
Confidence 3457788888886 46677766665532 34799999988776554443322100 000013588 99999974221
Q ss_pred --CCCCccEEEecCcC
Q psy425 225 --KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 --~~~~fD~I~~~~~~ 238 (254)
..+..|+||++.+.
T Consensus 154 ~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 154 GPALGNASVVICCIGA 169 (576)
T ss_pred HHHhcCCCEEEEcccc
Confidence 12358998887654
No 445
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=64.72 E-value=22 Score=31.07 Aligned_cols=78 Identities=10% Similarity=-0.000 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC---CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcC---C
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK---GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKK---N 226 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~---~ 226 (254)
.+.+||-.|+ +|+++..+++.+... .+|++++.++.......+.+ ...+++ ++.+|+.+...- -
T Consensus 3 ~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~--------~~~~~~-~v~~Dl~d~~~l~~~~ 72 (324)
T TIGR03589 3 NNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF--------PAPCLR-FFIGDVRDKERLTRAL 72 (324)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh--------CCCcEE-EEEccCCCHHHHHHHH
Confidence 3678887775 688887777765322 36888887654332222111 124688 999999753211 1
Q ss_pred CCccEEEecCcCcC
Q psy425 227 GPYDVIHFGSGVKH 240 (254)
Q Consensus 227 ~~fD~I~~~~~~~~ 240 (254)
..+|+|+..++..+
T Consensus 73 ~~iD~Vih~Ag~~~ 86 (324)
T TIGR03589 73 RGVDYVVHAAALKQ 86 (324)
T ss_pred hcCCEEEECcccCC
Confidence 24899988876643
No 446
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=64.70 E-value=57 Score=24.58 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=43.3
Q ss_pred EEEEEcCCC-Ch-HHHHHHHHcCCCCEEEEEeCC--------------H-----HHHHHHHHHHHhhCCCcccCCCeeEE
Q psy425 156 NVLDLGFGS-GF-MSCCMARMVGDKGHVTAVDHI--------------P-----QLINLFMTKLKISYPKLYKLYKIMDV 214 (254)
Q Consensus 156 ~VLDiG~G~-G~-~t~~la~~~~~~~~v~gvD~s--------------~-----~~l~~a~~~~~~~~~~~~~~~~v~~~ 214 (254)
+|+=+|||. |. .+..|++. + -++++.+|.+ + ...+.+++++++.+ ..-+++ .
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-G-v~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~----p~v~i~-~ 73 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-G-VGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN----PGVNVT-A 73 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-C-CCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC----CCcEEE-E
Confidence 467788862 33 22233333 2 2478888766 1 23445556666532 112333 3
Q ss_pred EEcCCCCCC--cCCCCccEEEecCcCcCchHHHHHHHHh
Q psy425 215 VEWDARKPY--KKNGPYDVIHFGSGVKHIPIEVSKLCRS 251 (254)
Q Consensus 215 ~~~d~~~~~--~~~~~fD~I~~~~~~~~~~~~l~~~lr~ 251 (254)
...++.... .....||+|+....-......+.+.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~ 112 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKE 112 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 333332211 1124599999876543333345555544
No 447
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=64.32 E-value=30 Score=28.71 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCC-ChH-HHHHHHHcCCCCEEEEEe-------------------CCHHHHHHHHHHHHhhCCCcccCCCe
Q psy425 153 PGANVLDLGFGS-GFM-SCCMARMVGDKGHVTAVD-------------------HIPQLINLFMTKLKISYPKLYKLYKI 211 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~-t~~la~~~~~~~~v~gvD-------------------~s~~~l~~a~~~~~~~~~~~~~~~~v 211 (254)
...+|+=+|||. |.. +..|++. |- ++++.+| +.....+.+.+++.+.+ ..-++
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~-Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~~~i 93 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA-GV-GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN----PDVEI 93 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc-CC-CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC----CCCEE
Confidence 467999999984 443 3334433 32 4677774 44445667777777642 12234
Q ss_pred eEEEEcCCCCCC--cCCCCccEEEecCc
Q psy425 212 MDVVEWDARKPY--KKNGPYDVIHFGSG 237 (254)
Q Consensus 212 ~~~~~~d~~~~~--~~~~~fD~I~~~~~ 237 (254)
+ .....+.... .....+|+|+...-
T Consensus 94 ~-~~~~~i~~~~~~~~~~~~DvVi~~~d 120 (228)
T cd00757 94 E-AYNERLDAENAEELIAGYDLVLDCTD 120 (228)
T ss_pred E-EecceeCHHHHHHHHhCCCEEEEcCC
Confidence 4 4444442110 11234899987653
No 448
>PRK06138 short chain dehydrogenase; Provisional
Probab=64.28 E-value=38 Score=27.79 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|+. |.++..+++.+.. ..+|++++.+++......+.+.. ..++. ++.+|+.+...
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~-~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA-------GGRAF-ARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhc-------CCeEE-EEEcCCCCHHHHHHHHHH
Confidence 46688888875 5556555554422 24799999887765554444331 23577 88999874321
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+++|.|+.+.+.
T Consensus 75 i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 75 VAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11358998887764
No 449
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=64.19 E-value=41 Score=25.61 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=47.7
Q ss_pred EEEEEcCCCChHHHHHHHHcCCC-C-EEEEEeCC--HHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 156 NVLDLGFGSGFMSCCMARMVGDK-G-HVTAVDHI--PQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~~-~-~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+|=.|++ +.++..+++.+... + +|+.+..+ .+..+...+.+... ..++. +..+|+....
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP------GAKIT-FIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT------TSEEE-EEESETTSHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc------ccccc-cccccccccccccccccc
Confidence 56777766 44555555554333 2 68888888 56555555555542 36788 9999987321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|.++.+...
T Consensus 74 ~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 74 VIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccc
Confidence 123569999988776
No 450
>PRK07454 short chain dehydrogenase; Provisional
Probab=64.18 E-value=63 Score=26.37 Aligned_cols=78 Identities=17% Similarity=0.103 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
...++|-.|+ +|.++..+++.+.. ..+|+.++.+++..+...+.+.. ...++. ++.+|+.+...
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~------~~~~~~-~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS------TGVKAA-AYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh------CCCcEE-EEEccCCCHHHHHHHHHH
Confidence 4567888885 67777777766533 33899999998766555554443 124688 88999874320
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 77 ~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 77 LLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 11347999887765
No 451
>PLN02253 xanthoxin dehydrogenase
Probab=64.13 E-value=31 Score=29.03 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.++++|-.|+ +|.++..+++.+.. ..+|+.++.+++..+...+.+. ...++. ++.+|+.+...
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~Dl~d~~~~~~~~~~ 87 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG-------GEPNVC-FFHCDVTVEDDVSRAVDF 87 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc-------CCCceE-EEEeecCCHHHHHHHHHH
Confidence 4678898885 45666666665532 3489999988766544433331 123677 88899874311
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.++.+.+.
T Consensus 88 ~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 88 TVDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 11358999888765
No 452
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=64.11 E-value=50 Score=30.17 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=43.9
Q ss_pred EEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC----cCCCCcc
Q psy425 156 NVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----KKNGPYD 230 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----~~~~~fD 230 (254)
+|+=+|+ |.++..+++.+.. ...|+.+|.+++.++.+++. ..+. ++.+|..... .....+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-----------~~~~-~~~gd~~~~~~l~~~~~~~a~ 67 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-----------LDVR-TVVGNGSSPDVLREAGAEDAD 67 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-----------cCEE-EEEeCCCCHHHHHHcCCCcCC
Confidence 4566665 7888888876533 23799999999987765542 1466 7888886321 1123478
Q ss_pred EEEecCc
Q psy425 231 VIHFGSG 237 (254)
Q Consensus 231 ~I~~~~~ 237 (254)
.|++...
T Consensus 68 ~vi~~~~ 74 (453)
T PRK09496 68 LLIAVTD 74 (453)
T ss_pred EEEEecC
Confidence 8777643
No 453
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=63.92 E-value=55 Score=27.13 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.+||=.|+++| ++..+++.+. ...+|+.++.+ ...+.+.+.+... ..++. ++.+|+.+...
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~i~~~~~~ 84 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE------GRKVT-FVQVDLTKPESAEKVVKE 84 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc------CCceE-EEEcCCCCHHHHHHHHHH
Confidence 5788999998655 4455554442 23378888877 3334444444331 24677 88899874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+..|.++.+...
T Consensus 85 ~~~~~g~id~li~~ag~ 101 (258)
T PRK06935 85 ALEEFGKIDILVNNAGT 101 (258)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12358999887764
No 454
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=63.85 E-value=5.6 Score=36.04 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.2
Q ss_pred CCEEEEEcCCCChHHHHH
Q psy425 154 GANVLDLGFGSGFMSCCM 171 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~l 171 (254)
..+|+|+|||+|..++.+
T Consensus 64 ~~~iaDlGcs~G~ntl~~ 81 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHI 81 (386)
T ss_pred ceeEEEecCCCCccHHHH
Confidence 568999999999887655
No 455
>PRK08226 short chain dehydrogenase; Provisional
Probab=63.20 E-value=42 Score=27.85 Aligned_cols=77 Identities=22% Similarity=0.201 Sum_probs=47.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|-.|+. |.++..+++.+. ...+|+.++.++...+.+.+. ... ..++. ++.+|+.+...
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-~~~------~~~~~-~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGANLILLDISPEIEKLADEL-CGR------GHRCT-AVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-HHh------CCceE-EEECCCCCHHHHHHHHHH
Confidence 46788888875 555555665543 334799999887644333332 221 23577 88899874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 76 ~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 76 AKEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHHcCCCCEEEECCCc
Confidence 12357999888775
No 456
>PRK07806 short chain dehydrogenase; Provisional
Probab=62.94 E-value=59 Score=26.65 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCH-HHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIP-QLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------ 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------ 224 (254)
.+.++|-.|+. |.++..+++.+. ...+|+++..+. ...+.....+... ..++. ++.+|+.+...
T Consensus 5 ~~k~vlItGas-ggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 5 PGKTALVTGSS-RGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRAS-AVGADLTDEESVAALMD 76 (248)
T ss_pred CCcEEEEECCC-CcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceE-EEEcCCCCHHHHHHHHH
Confidence 46789988864 456655665543 233788887654 2333333333331 23577 88899874221
Q ss_pred ----CCCCccEEEecCcC
Q psy425 225 ----KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ----~~~~fD~I~~~~~~ 238 (254)
..+..|+|+.+.+.
T Consensus 77 ~~~~~~~~~d~vi~~ag~ 94 (248)
T PRK07806 77 TAREEFGGLDALVLNASG 94 (248)
T ss_pred HHHHhCCCCcEEEECCCC
Confidence 11357988877654
No 457
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.74 E-value=51 Score=27.28 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCCC-CEEEEEeCC------------HHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGDK-GHVTAVDHI------------PQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~~-~~v~gvD~s------------~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
.+..||=.|++. |.++..+++.+... .+|+.++.+ ++... ..+.+.. ...++. ++..|
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~-~~~~D 75 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIES------YGVRCE-HMEID 75 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHh------cCCeEE-EEECC
Confidence 357899999764 56776666665332 378888765 22222 2222322 124688 88999
Q ss_pred CCCCCc----------CCCCccEEEecCcC
Q psy425 219 ARKPYK----------KNGPYDVIHFGSGV 238 (254)
Q Consensus 219 ~~~~~~----------~~~~fD~I~~~~~~ 238 (254)
+.+... ..+++|.|+.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~id~vi~~ag~ 105 (256)
T PRK12748 76 LSQPYAPNRVFYAVSERLGDPSILINNAAY 105 (256)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 874221 12458998888754
No 458
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.67 E-value=58 Score=26.45 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.+||-.|++ |.++..+++.+. ...+|++++.+++....+.+.+.. ..++. ++.+|+.+...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~-~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIH-YVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeE-EEECCCCCHHHHHHHHHH
Confidence 46789999985 555555665542 233899999998776655444433 13677 88899874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+.+|.++.+.+.
T Consensus 75 ~~~~~~~id~ii~~ag~ 91 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGG 91 (238)
T ss_pred HHHHhCCCCEEEEcCCC
Confidence 01346888777653
No 459
>PRK07576 short chain dehydrogenase; Provisional
Probab=62.62 E-value=60 Score=27.17 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
++.++|-.|. +|.++..+++.+.. ..+|++++.+++.++...+.+... ..++. ++.+|+.+..
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGL-GVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceE-EEECCCCCHHHHHHHHHH
Confidence 5778998885 55666666655433 337999999888766555555442 23567 8888886321
Q ss_pred --cCCCCccEEEecCc
Q psy425 224 --KKNGPYDVIHFGSG 237 (254)
Q Consensus 224 --~~~~~fD~I~~~~~ 237 (254)
...+++|.++.+..
T Consensus 80 ~~~~~~~iD~vi~~ag 95 (264)
T PRK07576 80 IADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHHcCCCCEEEECCC
Confidence 01235799987764
No 460
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.56 E-value=48 Score=29.46 Aligned_cols=77 Identities=21% Similarity=0.123 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCC-Ch-HHHHHHHHcCCCCEEEEEeCCH---------------------HHHHHHHHHHHhhCCCcccCC
Q psy425 153 PGANVLDLGFGS-GF-MSCCMARMVGDKGHVTAVDHIP---------------------QLINLFMTKLKISYPKLYKLY 209 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~-~t~~la~~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~~~~~~~~~ 209 (254)
...+||=+|||. |. .+..|++. | -++++.+|.+. .-++.+++++.+.+ ..-
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-G-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in----p~v 96 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-G-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN----SEV 96 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC----CCc
Confidence 567899999984 33 22333333 2 24799899874 23455566666642 223
Q ss_pred CeeEEEEcCCCCCC--cCCCCccEEEecC
Q psy425 210 KIMDVVEWDARKPY--KKNGPYDVIHFGS 236 (254)
Q Consensus 210 ~v~~~~~~d~~~~~--~~~~~fD~I~~~~ 236 (254)
+++ ....++.... .....+|+|+...
T Consensus 97 ~i~-~~~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 97 EIV-PVVTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred EEE-EEeccCCHHHHHHHhcCCCEEEEcC
Confidence 455 5555554111 1123489988875
No 461
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.55 E-value=65 Score=27.80 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCH-HHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----c-
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIP-QLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-----K- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-----~- 224 (254)
.+.++|=.|++.|. +..+++.+. ...+|+.+|.+. ..++...+.+... ..++. ++.+|+.+.. .
T Consensus 11 ~~k~~lVTGas~gI-G~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~------g~~~~-~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 11 SGKVAVVTGAAAGL-GRAEALGLARLGATVVVNDVASALDASDVLDEIRAA------GAKAV-AVAGDISQRATADELVA 82 (306)
T ss_pred CCCEEEEECCCChH-HHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc------CCeEE-EEeCCCCCHHHHHHHHH
Confidence 57789988887654 444444432 234788888743 3343333434331 23677 8888986421 0
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|+++.+.+.
T Consensus 83 ~~~~~g~iD~li~nAG~ 99 (306)
T PRK07792 83 TAVGLGGLDIVVNNAGI 99 (306)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 02468999888765
No 462
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=62.01 E-value=32 Score=30.36 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=35.5
Q ss_pred cCCCCCEEEEEcC-C-CChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGF-G-SGFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~-G-~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.+|++||=.|+ | .|..+..+|+..+. +|++++.+++..+.+++
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~--~Vi~~~~~~~k~~~~~~ 201 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGC--YVVGSAGSSQKVDLLKN 201 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH
Confidence 5778999999998 3 57777888888654 79999999887776653
No 463
>PLN02427 UDP-apiose/xylose synthase
Probab=61.90 E-value=20 Score=32.02 Aligned_cols=79 Identities=11% Similarity=0.099 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC--CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---CCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK--GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---KNG 227 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---~~~ 227 (254)
+.++||=.| |+|+++..+++.+-.. .+|+++|.+...+.......... ...+++ ++.+|+.+... .-.
T Consensus 13 ~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~-----~~~~~~-~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 13 KPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVP-----WSGRIQ-FHRINIKHDSRLEGLIK 85 (386)
T ss_pred cCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccccc-----CCCCeE-EEEcCCCChHHHHHHhh
Confidence 346788776 6899998888876433 37999997755332211110000 123688 99999974321 112
Q ss_pred CccEEEecCcC
Q psy425 228 PYDVIHFGSGV 238 (254)
Q Consensus 228 ~fD~I~~~~~~ 238 (254)
.+|+|+-.++.
T Consensus 86 ~~d~ViHlAa~ 96 (386)
T PLN02427 86 MADLTINLAAI 96 (386)
T ss_pred cCCEEEEcccc
Confidence 37988877654
No 464
>PRK08628 short chain dehydrogenase; Provisional
Probab=61.88 E-value=90 Score=25.73 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|=.|++ |.++..+++.+. ...+|+.++.++...+.. +.+... ..++. ++.+|+.+...
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 76 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRAL------QPRAE-FVQVDLTDDAQCRDAVEQ 76 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhc------CCceE-EEEccCCCHHHHHHHHHH
Confidence 46788888864 556666665543 233688888887765332 333331 24678 88899874210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 77 TVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHhcCCCCEEEECCcc
Confidence 11357999888764
No 465
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=61.73 E-value=47 Score=29.54 Aligned_cols=78 Identities=21% Similarity=0.139 Sum_probs=43.2
Q ss_pred CCCEEEEEcCCC-Ch-HHHHHHHHcCCCCEEEEEeCCH---------------------HHHHHHHHHHHhhCCCcccCC
Q psy425 153 PGANVLDLGFGS-GF-MSCCMARMVGDKGHVTAVDHIP---------------------QLINLFMTKLKISYPKLYKLY 209 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~-~t~~la~~~~~~~~v~gvD~s~---------------------~~l~~a~~~~~~~~~~~~~~~ 209 (254)
...+||=+|||. |. .+..|+.. | -++++.+|.+. .-.+.+++++.+.+ ..-
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in----p~v 96 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-G-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN----SDV 96 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-C-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC----CCc
Confidence 568899999973 43 33334433 2 35799999873 23344556666532 122
Q ss_pred CeeEEEEcCCCCCC--cCCCCccEEEecCc
Q psy425 210 KIMDVVEWDARKPY--KKNGPYDVIHFGSG 237 (254)
Q Consensus 210 ~v~~~~~~d~~~~~--~~~~~fD~I~~~~~ 237 (254)
+++ ....++.... ..-..||+|+...-
T Consensus 97 ~v~-~~~~~~~~~~~~~~~~~~DlVid~~D 125 (339)
T PRK07688 97 RVE-AIVQDVTAEELEELVTGVDLIIDATD 125 (339)
T ss_pred EEE-EEeccCCHHHHHHHHcCCCEEEEcCC
Confidence 355 5555553211 11235899988743
No 466
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.71 E-value=44 Score=27.23 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCC-CCEEEEE-eCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGD-KGHVTAV-DHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gv-D~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
+.++|=+|+ +|.++..+++.+.. ..+|+.+ +.+++..+...+.+... ..++. ++.+|+.+...
T Consensus 5 ~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 76 (247)
T PRK05565 5 GKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE------GGDAI-AVKADVSSEEDVENLVEQ 76 (247)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEE-EEECCCCCHHHHHHHHHH
Confidence 457888875 67777777665432 2378888 88877666555554441 24688 89999874321
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+++|+|+.+.+.
T Consensus 77 ~~~~~~~id~vi~~ag~ 93 (247)
T PRK05565 77 IVEKFGKIDILVNNAGI 93 (247)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 01258999888765
No 467
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=61.63 E-value=22 Score=32.11 Aligned_cols=79 Identities=22% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCCCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHH--HHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---
Q psy425 151 LLPGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINL--FMTKLKISYPKLYKLYKIMDVVEWDARKPYK--- 224 (254)
Q Consensus 151 ~~~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~--a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~--- 224 (254)
...+.+||-+| |+|+++..+++.+.. ..+|++++.++..... ....... ...+++ ++.+|+.+...
T Consensus 57 ~~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~------~~~~v~-~v~~Dl~d~~~l~~ 128 (390)
T PLN02657 57 EPKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKK------ELPGAE-VVFGDVTDADSLRK 128 (390)
T ss_pred CCCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhh------hcCCce-EEEeeCCCHHHHHH
Confidence 34577999888 689988888776532 2379999877643321 0111111 124688 99999875321
Q ss_pred --CC--CCccEEEecCc
Q psy425 225 --KN--GPYDVIHFGSG 237 (254)
Q Consensus 225 --~~--~~fD~I~~~~~ 237 (254)
.. ..+|+|+...+
T Consensus 129 ~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 129 VLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHhCCCCcEEEECCc
Confidence 11 14899987544
No 468
>PRK07326 short chain dehydrogenase; Provisional
Probab=61.61 E-value=63 Score=26.22 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
.+.++|-+|+ +|.++..+++.+.. ..+|++++.++.......+.+.. . ..+. ++.+|+.+...
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~------~-~~~~-~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN------K-GNVL-GLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc------c-CcEE-EEEccCCCHHHHHHHHHH
Confidence 4678998985 67777777665532 33799999988766655554433 1 4677 88888863210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+.+|.|+.+.+.
T Consensus 76 ~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 76 IVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 11357988877654
No 469
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=61.41 E-value=29 Score=30.56 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHH-HhhCCCcccCCCeeEEEEcCCCCCCc---CCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKL-KISYPKLYKLYKIMDVVEWDARKPYK---KNG 227 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~-~~~~~~~~~~~~v~~~~~~d~~~~~~---~~~ 227 (254)
.+++||=.| |+|+++..+++.+... .+|+++|............+ ...+. ....+++ ++.+|+.+... ...
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSE--EQWSRFI-FIQGDIRKFTDCQKACK 89 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhcccc--ccCCceE-EEEccCCCHHHHHHHhh
Confidence 457888888 5899998888876433 37999997543211111111 11000 0124688 99999975321 012
Q ss_pred CccEEEecCcCcC
Q psy425 228 PYDVIHFGSGVKH 240 (254)
Q Consensus 228 ~fD~I~~~~~~~~ 240 (254)
.+|.|+..++...
T Consensus 90 ~~d~ViHlAa~~~ 102 (348)
T PRK15181 90 NVDYVLHQAALGS 102 (348)
T ss_pred CCCEEEECccccC
Confidence 4799888877543
No 470
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=61.33 E-value=34 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHH
Q psy425 151 LLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLI 191 (254)
Q Consensus 151 ~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l 191 (254)
+.++++||-.|+|. |..+..+|+..+. +|++++.+++..
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga--~vi~~~~~~~~~ 220 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL--KVTVISSSSNKE 220 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCcchh
Confidence 46789999998864 6666667777654 688888876543
No 471
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=61.10 E-value=49 Score=31.57 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC--CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----cC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD--KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-----KK 225 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-----~~ 225 (254)
.|++||--|. +|.++..+.+..-. ..+++-+|.++..+......+...- ...++. +..+|+.+.. ..
T Consensus 249 ~gK~vLVTGa-gGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~----~~~~~~-~~igdVrD~~~~~~~~~ 322 (588)
T COG1086 249 TGKTVLVTGG-GGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF----PELKLR-FYIGDVRDRDRVERAME 322 (588)
T ss_pred CCCEEEEeCC-CCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC----CCcceE-EEecccccHHHHHHHHh
Confidence 5788888875 47777777665421 2389999999999988888877631 235688 9999998432 22
Q ss_pred CCCccEEEecCcCcCchH
Q psy425 226 NGPYDVIHFGSGVKHIPI 243 (254)
Q Consensus 226 ~~~fD~I~~~~~~~~~~~ 243 (254)
.-+.|+|+-.+++.|+|-
T Consensus 323 ~~kvd~VfHAAA~KHVPl 340 (588)
T COG1086 323 GHKVDIVFHAAALKHVPL 340 (588)
T ss_pred cCCCceEEEhhhhccCcc
Confidence 335899999999988873
No 472
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=61.09 E-value=48 Score=30.77 Aligned_cols=82 Identities=24% Similarity=0.268 Sum_probs=49.9
Q ss_pred CCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCcCCCCccEE
Q psy425 154 GANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232 (254)
Q Consensus 154 ~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~~~~~fD~I 232 (254)
+++|+=+|-|- |.....+....+ ..|+..|..+.......... ...+++ +..+.... .....+|+|
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G--~~v~v~D~~~~~~~~~~~~~--------~~~~i~-~~~g~~~~--~~~~~~d~v 73 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLG--AEVTVSDDRPAPEGLAAQPL--------LLEGIE-VELGSHDD--EDLAEFDLV 73 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCC--CeEEEEcCCCCccchhhhhh--------hccCce-eecCccch--hccccCCEE
Confidence 78999999884 544444333333 37999999888732222211 234677 76665443 233458999
Q ss_pred EecCcCcCchHHHHHH
Q psy425 233 HFGSGVKHIPIEVSKL 248 (254)
Q Consensus 233 ~~~~~~~~~~~~l~~~ 248 (254)
+.+.+++.-.+.+.++
T Consensus 74 V~SPGi~~~~p~v~~A 89 (448)
T COG0771 74 VKSPGIPPTHPLVEAA 89 (448)
T ss_pred EECCCCCCCCHHHHHH
Confidence 9998886444434333
No 473
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=61.09 E-value=14 Score=29.53 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=25.1
Q ss_pred EEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHh
Q psy425 157 VLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKI 200 (254)
Q Consensus 157 VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~ 200 (254)
|-=||+|+ ++..+|..+. ..-+|+.+|.+++.++.+++++..
T Consensus 2 V~ViGaG~--mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGT--MGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SH--HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCH--HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 45567754 3333333221 122799999999999888887665
No 474
>PRK06482 short chain dehydrogenase; Provisional
Probab=61.00 E-value=52 Score=27.58 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=46.6
Q ss_pred CEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc---------
Q psy425 155 ANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK--------- 224 (254)
Q Consensus 155 ~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~--------- 224 (254)
.++|=.|+ +|.++..+++.+.. ..+|++++.+++.++..++.. ..++. ++.+|+.+...
T Consensus 3 k~vlVtGa-sg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~-~~~~D~~~~~~~~~~~~~~~ 71 (276)
T PRK06482 3 KTWFITGA-SSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---------GDRLW-VLQLDVTDSAAVRAVVDRAF 71 (276)
T ss_pred CEEEEecC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCceE-EEEccCCCHHHHHHHHHHHH
Confidence 46777776 56777766665533 337999998887655443321 23677 88899874320
Q ss_pred -CCCCccEEEecCcC
Q psy425 225 -KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 -~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 72 ~~~~~id~vi~~ag~ 86 (276)
T PRK06482 72 AALGRIDVVVSNAGY 86 (276)
T ss_pred HHcCCCCEEEECCCC
Confidence 12357999888765
No 475
>PRK08264 short chain dehydrogenase; Validated
Probab=61.00 E-value=31 Score=28.18 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCC-C-EEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDK-G-HVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------ 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------ 224 (254)
.+.++|=+|+ +|.++..+++.+... . +|+.++.+++.++. . ..++. ++.+|+.+...
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~-------~~~~~-~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD------L-------GPRVV-PLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh------c-------CCceE-EEEecCCCHHHHHHHHH
Confidence 4578888885 677777766655332 3 78889887654332 1 13677 88898874211
Q ss_pred CCCCccEEEecCcC
Q psy425 225 KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ~~~~fD~I~~~~~~ 238 (254)
...+.|+|+.+.+.
T Consensus 70 ~~~~id~vi~~ag~ 83 (238)
T PRK08264 70 AASDVTILVNNAGI 83 (238)
T ss_pred hcCCCCEEEECCCc
Confidence 12347999888766
No 476
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=60.97 E-value=53 Score=26.92 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEe-CCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVD-HIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------ 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD-~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------ 224 (254)
.+.++|-.| |+|.++..+++.+.. ..+|+.+. .+++..+...+.+... ..++. ++.+|+.+...
T Consensus 5 ~~~~~lItG-~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~------~~~~~-~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 5 NGKVAIVTG-GAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE------GHDVY-AVQADVSKVEDANRLVE 76 (247)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc------CCeEE-EEECCCCCHHHHHHHHH
Confidence 467899999 467777777765532 23676543 3444444333333331 23588 89999874211
Q ss_pred ----CCCCccEEEecCcC
Q psy425 225 ----KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ----~~~~fD~I~~~~~~ 238 (254)
..++.|.|+.+.+.
T Consensus 77 ~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 77 EAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 11357999888766
No 477
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=60.96 E-value=43 Score=30.12 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCC-ChH-HHHHHHHcCCCCEEEEEeCC-------------------HHHHHHHHHHHHhhCCCcccCCCe
Q psy425 153 PGANVLDLGFGS-GFM-SCCMARMVGDKGHVTAVDHI-------------------PQLINLFMTKLKISYPKLYKLYKI 211 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~-t~~la~~~~~~~~v~gvD~s-------------------~~~l~~a~~~~~~~~~~~~~~~~v 211 (254)
.+.+|+=+|||. |.. +..|+.. |- ++++.+|.+ ....+.+.+++.+.+ ..-++
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~-Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n----p~v~v 207 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA-GV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN----PDVQV 207 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC----CCCEE
Confidence 567899999973 443 3344444 32 479999887 345666667776632 11233
Q ss_pred eEEEEcCCCCCC--cCCCCccEEEecC
Q psy425 212 MDVVEWDARKPY--KKNGPYDVIHFGS 236 (254)
Q Consensus 212 ~~~~~~d~~~~~--~~~~~fD~I~~~~ 236 (254)
+ .....+.... .....+|+|+...
T Consensus 208 ~-~~~~~~~~~~~~~~~~~~D~Vv~~~ 233 (376)
T PRK08762 208 E-AVQERVTSDNVEALLQDVDVVVDGA 233 (376)
T ss_pred E-EEeccCChHHHHHHHhCCCEEEECC
Confidence 3 3333332110 0013489888764
No 478
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=60.88 E-value=34 Score=30.32 Aligned_cols=46 Identities=26% Similarity=0.377 Sum_probs=32.9
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++++||=.|+|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 577899999998753 4455556665542 269999999988777644
No 479
>PRK06500 short chain dehydrogenase; Provisional
Probab=60.74 E-value=56 Score=26.73 Aligned_cols=75 Identities=20% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
++.++|=.|++ |.++..+++.+. ...+|++++.+++.++...+.+ ..++. ++.+|..+..
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~-~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 5 QGKTALITGGT-SGIGLETARQFLAEGARVAITGRDPASLEAARAEL---------GESAL-VIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---------CCceE-EEEecCCCHHHHHHHHHH
Confidence 45678888875 455555555442 2337999998876554433322 23567 7788876321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+++|.|+.+.+.
T Consensus 74 ~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 74 LAEAFGRLDAVFINAGV 90 (249)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 112458998887765
No 480
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.57 E-value=54 Score=27.71 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCC-ChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGS-GFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~-G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|-.|+++ +.++..+++.+.. ..+|+.++.++...+..++..... .... ++.+|+.+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~-------g~~~-~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESL-------GSDF-VLPCDVEDIASVDAVFE 77 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhc-------CCce-EEeCCCCCHHHHHHHHH
Confidence 578899999876 2456556655533 337888877654333333322221 1234 6778887421
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.+.
T Consensus 78 ~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHHhCCCCEEEECCcc
Confidence 112568999988775
No 481
>PRK08324 short chain dehydrogenase; Validated
Probab=60.49 E-value=49 Score=32.34 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK------- 224 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~------- 224 (254)
++++||-.|++ |.++..+++.+. ...+|+.+|.+++.++.+.+.+.. . .++. ++.+|+.+...
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~------~-~~v~-~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG------P-DRAL-GVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc------c-CcEE-EEEecCCCHHHHHHHHHH
Confidence 56889988864 445555555442 234799999998877666554432 1 4677 88888864210
Q ss_pred ---CCCCccEEEecCcC
Q psy425 225 ---KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ---~~~~fD~I~~~~~~ 238 (254)
..+++|+|+.+.+.
T Consensus 492 ~~~~~g~iDvvI~~AG~ 508 (681)
T PRK08324 492 AALAFGGVDIVVSNAGI 508 (681)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 12358999988774
No 482
>PLN02827 Alcohol dehydrogenase-like
Probab=60.40 E-value=21 Score=31.94 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=32.8
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++++||-.|+|. |..+..+++..+. ..|+++|.+++..+.+++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH
Confidence 577899999998754 5555556666542 258899999888777644
No 483
>PRK08303 short chain dehydrogenase; Provisional
Probab=60.22 E-value=64 Score=27.96 Aligned_cols=76 Identities=17% Similarity=0.135 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcC-CCCEEEEEeCCH----------HHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCC
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVG-DKGHVTAVDHIP----------QLINLFMTKLKISYPKLYKLYKIMDVVEWDARK 221 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~-~~~~v~gvD~s~----------~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~ 221 (254)
.+..+|-.|+++| ++..+++.+. ...+|+.++.+. +.++.+.+.+... ..++. ++.+|+.+
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~-~~~~Dv~~ 78 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA------GGRGI-AVQVDHLV 78 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc------CCceE-EEEcCCCC
Confidence 4788999997766 5555555542 234788888763 3344444444432 23567 78889874
Q ss_pred CC----------cCCCCccEEEecC
Q psy425 222 PY----------KKNGPYDVIHFGS 236 (254)
Q Consensus 222 ~~----------~~~~~fD~I~~~~ 236 (254)
.. ...++.|+++.+.
T Consensus 79 ~~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 79 PEQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECC
Confidence 21 1124689888876
No 484
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=60.12 E-value=38 Score=30.03 Aligned_cols=46 Identities=26% Similarity=0.449 Sum_probs=33.2
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.++++++||=.|+|. |..+..+++..+. .+|+++|.+++.++.+++
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Confidence 578899999998753 4455556666542 269999999998877654
No 485
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.98 E-value=64 Score=26.99 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCCEEEEEcCCCC-hHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFGSG-FMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G-~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|=.|+++| .++..+++.+.. ..+|+..+.++...+.+++..... .... ++.+|+.+..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~-------g~~~-~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEI-------GCNF-VSELDVTNPKSISNLFD 78 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhc-------CCce-EEEccCCCHHHHHHHHH
Confidence 5678899999764 455555555432 237888777643323333322221 1234 5667886421
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+...
T Consensus 79 ~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 79 DIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred HHHHHcCCccEEEEcccc
Confidence 112568998887764
No 486
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=59.86 E-value=42 Score=27.71 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=43.4
Q ss_pred EEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc----------
Q psy425 156 NVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK---------- 224 (254)
Q Consensus 156 ~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~---------- 224 (254)
+||=.|+ +|.++..+++.+.. ..+|++++.+++.++.....+ ..++. ++.+|+.+...
T Consensus 2 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~-~~~~Dl~~~~~i~~~~~~~~~ 70 (248)
T PRK10538 2 IVLVTGA-TAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------GDNLY-IAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------ccceE-EEEecCCCHHHHHHHHHHHHH
Confidence 4566665 45566666665532 348999999987655443322 12577 88888864210
Q ss_pred CCCCccEEEecCcC
Q psy425 225 KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 ~~~~fD~I~~~~~~ 238 (254)
..+..|.|+.+.+.
T Consensus 71 ~~~~id~vi~~ag~ 84 (248)
T PRK10538 71 EWRNIDVLVNNAGL 84 (248)
T ss_pred HcCCCCEEEECCCc
Confidence 11358999877654
No 487
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.79 E-value=53 Score=27.54 Aligned_cols=78 Identities=10% Similarity=0.045 Sum_probs=43.9
Q ss_pred CCCEEEEEcC-CCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGF-GSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~-G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++++|=.|+ |++.++..+++.+.. ..+|+.++......+..++...+ ..... +..+|+.+..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~Dv~d~~~v~~~~~ 76 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAE-------FGSDL-VFPCDVASDEQIDALFA 76 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHh-------cCCcc-eeeccCCCHHHHHHHHH
Confidence 4678999997 466677777766533 23677765432222222222222 11234 5667876321
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+.+.
T Consensus 77 ~~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 77 SLGQHWDGLDGLVHSIGF 94 (260)
T ss_pred HHHHHhCCCcEEEEcccc
Confidence 112568999988765
No 488
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=59.62 E-value=39 Score=26.39 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHhhhcCC-CCCEEEEEcCCCChHHHHHHHHcCCCCEEEEEeCC
Q psy425 141 AACLQHLSDKLL-PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHI 187 (254)
Q Consensus 141 ~~~l~~l~~~~~-~~~~VLDiG~G~G~~t~~la~~~~~~~~v~gvD~s 187 (254)
..+++++...+. ...-|||+|-|.|..=-.|.+.+ +.-+++.+|-.
T Consensus 15 R~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR~ 61 (160)
T PF12692_consen 15 RDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDRA 61 (160)
T ss_dssp HHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS
T ss_pred HHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhC-CCCeEEEEeee
Confidence 344555543333 34689999999999999999987 44578888864
No 489
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=59.49 E-value=24 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=35.9
Q ss_pred cCCCCCEEEEEc-CC-CChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHH
Q psy425 150 KLLPGANVLDLG-FG-SGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 150 ~~~~~~~VLDiG-~G-~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~ 197 (254)
.++++++||=+| +| .|..+..+++..+.. .+|+++|.+++.++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 567889999897 44 466777777764321 2699999999999988775
No 490
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=59.43 E-value=36 Score=28.46 Aligned_cols=47 Identities=23% Similarity=0.317 Sum_probs=34.8
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
.+.++.+||-.|+|. |..+..+|+..+.. +|++++.+++..+.+++.
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHHHc
Confidence 677899999998765 66666677766541 399999999887766653
No 491
>PRK07074 short chain dehydrogenase; Provisional
Probab=59.40 E-value=53 Score=27.13 Aligned_cols=75 Identities=21% Similarity=0.215 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc--------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-------- 224 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-------- 224 (254)
+.++|=.|+++ .++..+++.+.. ..+|++++.+++..+...+.+. ..++. ++.+|+.+...
T Consensus 2 ~k~ilItGat~-~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~--------~~~~~-~~~~D~~~~~~~~~~~~~~ 71 (257)
T PRK07074 2 KRTALVTGAAG-GIGQALARRFLAAGDRVLALDIDAAALAAFADALG--------DARFV-PVACDLTDAASLAAALANA 71 (257)
T ss_pred CCEEEEECCcc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--------CCceE-EEEecCCCHHHHHHHHHHH
Confidence 34677777755 456666655432 3389999998776554443331 23577 88898864221
Q ss_pred --CCCCccEEEecCcC
Q psy425 225 --KNGPYDVIHFGSGV 238 (254)
Q Consensus 225 --~~~~fD~I~~~~~~ 238 (254)
..+.+|.|+.+.+.
T Consensus 72 ~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 72 AAERGPVDVLVANAGA 87 (257)
T ss_pred HHHcCCCCEEEECCCC
Confidence 01347999888765
No 492
>PRK08862 short chain dehydrogenase; Provisional
Probab=59.10 E-value=67 Score=26.38 Aligned_cols=77 Identities=8% Similarity=-0.057 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCChHHHHHHHHc-CCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 153 PGANVLDLGFGSGFMSCCMARMV-GDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
.+.++|=.|++.|. +..+++.+ ....+|+.++.+++.++.+.+.+... ...+. ....|..+..
T Consensus 4 ~~k~~lVtGas~GI-G~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~------~~~~~-~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 4 KSSIILITSAGSVL-GRTISCHFARLGATLILCDQDQSALKDTYEQCSAL------TDNVY-SFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CCeEEEEECCccHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCCeE-EEEccCCCHHHHHHHHHH
Confidence 46789999988875 33333333 23347999999998887776666552 23466 6677775321
Q ss_pred --cCCC-CccEEEecCc
Q psy425 224 --KKNG-PYDVIHFGSG 237 (254)
Q Consensus 224 --~~~~-~fD~I~~~~~ 237 (254)
...+ ..|+++.+.+
T Consensus 76 ~~~~~g~~iD~li~nag 92 (227)
T PRK08862 76 IEQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHHhCCCCCEEEECCc
Confidence 1113 6899888874
No 493
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=59.02 E-value=92 Score=26.32 Aligned_cols=83 Identities=23% Similarity=0.223 Sum_probs=49.1
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCCCChH-HHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcC
Q psy425 140 QAACLQHLSDKLLPGANVLDLGFGSGFM-SCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWD 218 (254)
Q Consensus 140 ~~~~l~~l~~~~~~~~~VLDiG~G~G~~-t~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d 218 (254)
...+..++ .-....++|-+|+ |+ +..+|+.+....+|+.+|+.|++.+.. ..++. |...-
T Consensus 30 a~ai~~~l--e~~~~k~~lI~G~---YltG~~iA~~L~~~~eV~lvDI~p~lk~ll-------------~~~i~-F~~~~ 90 (252)
T PF06690_consen 30 ANAIKYWL--EGEEFKQALIFGA---YLTGNFIASALSKKCEVTLVDIHPHLKELL-------------NENIK-FMEFR 90 (252)
T ss_pred HHHHHHHh--cccccceEEEEEE---EeehHHHHHHhccCceEEEEeCcHHHHHHh-------------cCCCc-eeecc
Confidence 34444444 2223448999985 32 245666665555899999999986654 23577 77321
Q ss_pred CCCCCcCCCCccEEEecCcCcCchHHH
Q psy425 219 ARKPYKKNGPYDVIHFGSGVKHIPIEV 245 (254)
Q Consensus 219 ~~~~~~~~~~fD~I~~~~~~~~~~~~l 245 (254)
.. ....+|+|+=--++-.+.+..
T Consensus 91 --~~--~~~~~DlIID~TGlGGv~~~~ 113 (252)
T PF06690_consen 91 --NG--LEGNPDLIIDTTGLGGVDPDF 113 (252)
T ss_pred --CC--CCCCCCEEEECCCCCCCCHHH
Confidence 11 122478887766665554433
No 494
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=59.01 E-value=50 Score=27.61 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=45.4
Q ss_pred CCCEEEEEcCC-CChHHHHHHHHcCCC-CEEEEEeCCHH--HHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-----
Q psy425 153 PGANVLDLGFG-SGFMSCCMARMVGDK-GHVTAVDHIPQ--LINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY----- 223 (254)
Q Consensus 153 ~~~~VLDiG~G-~G~~t~~la~~~~~~-~~v~gvD~s~~--~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~----- 223 (254)
.++.+|=.|++ ++.++..+++.+... .+|+.+..+.+ ..+...+.+... ..++. ++..|+.+..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP------LNPSL-FLPCDVQDDAQIEET 77 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc------cCcce-EeecCcCCHHHHHHH
Confidence 46789999985 577777777766433 36766654332 111111222221 12466 7778886421
Q ss_pred -----cCCCCccEEEecCcC
Q psy425 224 -----KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 -----~~~~~fD~I~~~~~~ 238 (254)
...+++|+++.+.++
T Consensus 78 ~~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 78 FETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHHcCCCCEEEEcccc
Confidence 112468999888765
No 495
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=59.01 E-value=61 Score=27.41 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=46.2
Q ss_pred CCCEEEEEcCC-CChHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC-------
Q psy425 153 PGANVLDLGFG-SGFMSCCMARMVGDK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY------- 223 (254)
Q Consensus 153 ~~~~VLDiG~G-~G~~t~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~------- 223 (254)
.++.+|=.|++ ++.++..+++.+... .+|+.+..++...+.+++..++. .... ++.+|+.+..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~-------~~~~-~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAEL-------GAFV-AGHCDVTDEASIDAVFE 80 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhc-------CCce-EEecCCCCHHHHHHHHH
Confidence 56789999986 466777777666333 37777765533333333332221 2355 6778886321
Q ss_pred ---cCCCCccEEEecCcC
Q psy425 224 ---KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 ---~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.++
T Consensus 81 ~~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHHhcCCCcEEEECCcc
Confidence 112468999988765
No 496
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=58.89 E-value=76 Score=27.49 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCChHHHHHHHHcC-CC-CEEEEEeCCHHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCC--------
Q psy425 154 GANVLDLGFGSGFMSCCMARMVG-DK-GHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY-------- 223 (254)
Q Consensus 154 ~~~VLDiG~G~G~~t~~la~~~~-~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~-------- 223 (254)
+.++|-.|+..| ++..+++.+. .. .+|+.+..+++..+.+.+.+.. ...++. ++.+|+.+..
T Consensus 3 ~k~vlITGas~G-IG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~------~~~~~~-~~~~Dl~~~~~v~~~~~~ 74 (314)
T TIGR01289 3 KPTVIITGASSG-LGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM------PKDSYT-IMHLDLGSLDSVRQFVQQ 74 (314)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC------CCCeEE-EEEcCCCCHHHHHHHHHH
Confidence 457888886654 4555555442 22 4788888888766555544432 123577 7888886321
Q ss_pred --cCCCCccEEEecCcC
Q psy425 224 --KKNGPYDVIHFGSGV 238 (254)
Q Consensus 224 --~~~~~fD~I~~~~~~ 238 (254)
...+..|+++.+.++
T Consensus 75 ~~~~~~~iD~lI~nAG~ 91 (314)
T TIGR01289 75 FRESGRPLDALVCNAAV 91 (314)
T ss_pred HHHhCCCCCEEEECCCc
Confidence 112458999988765
No 497
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=58.52 E-value=13 Score=27.30 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Q psy425 163 GSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197 (254)
Q Consensus 163 G~G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~~ 197 (254)
|.|..+..+|+..+ .+|+++|.+++.++.+++.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 45788889999887 5999999999988887764
No 498
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=58.45 E-value=39 Score=29.90 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred cCCCCCEEEEEcCCC-ChHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Q psy425 150 KLLPGANVLDLGFGS-GFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196 (254)
Q Consensus 150 ~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~gvD~s~~~l~~a~~ 196 (254)
.+.++.+||=+|+|. |..+..+|+..+. .+|++++.+++..+.+++
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE 227 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH
Confidence 577899999998753 4455566666542 269999999888777754
No 499
>KOG2811|consensus
Probab=58.26 E-value=23 Score=31.88 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCCCCEEEE---EeCCHHHHHHHHHHH
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTA---VDHIPQLINLFMTKL 198 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~g---vD~s~~~l~~a~~~~ 198 (254)
++..++|+|||.|.++.+++...+ ...++- +|-....++.-++..
T Consensus 182 ~~~~~vEFGAGrg~Ls~~vs~~l~-~~~~~l~vlvdR~s~R~K~D~k~~ 229 (420)
T KOG2811|consen 182 PSSCFVEFGAGRGELSRWVSDCLQ-IQNVYLFVLVDRKSSRLKFDRKLR 229 (420)
T ss_pred CcceEEEecCCchHHHHHHHHHhc-cccEEEEEeecccchhhhhhhhhh
Confidence 457999999999999999998874 344555 777666655544443
No 500
>PRK09135 pteridine reductase; Provisional
Probab=57.74 E-value=80 Score=25.68 Aligned_cols=79 Identities=14% Similarity=0.067 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCChHHHHHHHHcCC-CCEEEEEeCC-HHHHHHHHHHHHhhCCCcccCCCeeEEEEcCCCCCCc-----C
Q psy425 153 PGANVLDLGFGSGFMSCCMARMVGD-KGHVTAVDHI-PQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYK-----K 225 (254)
Q Consensus 153 ~~~~VLDiG~G~G~~t~~la~~~~~-~~~v~gvD~s-~~~l~~a~~~~~~~~~~~~~~~~v~~~~~~d~~~~~~-----~ 225 (254)
.+.++|-.|+ +|.++..+++.+.. ..+|++++.+ +...+...+.+... ...++. ++.+|+.+... .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~-~~~~Dl~~~~~~~~~~~ 77 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNAL-----RPGSAA-ALQADLLDPDALPELVA 77 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhh-----cCCceE-EEEcCCCCHHHHHHHHH
Confidence 4578999996 56666666665532 3489999875 33333333333331 123577 88999874221 0
Q ss_pred -----CCCccEEEecCcC
Q psy425 226 -----NGPYDVIHFGSGV 238 (254)
Q Consensus 226 -----~~~fD~I~~~~~~ 238 (254)
.+..|.|+.+.+.
T Consensus 78 ~~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 78 ACVAAFGRLDALVNNASS 95 (249)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 1347998888764
Done!