RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy425
(254 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 81.6 bits (202), Expect = 7e-19
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
A L+ L +L PG VL++G GSG+++ C ARMVG+ G V +++HIP+L+ +I
Sbjct: 63 AMMLELL--ELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELV-------EI 113
Query: 201 SYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ L KL + + VV D R+ + + PYD IH G+ IP
Sbjct: 114 ARRNLEKLGLENVIVVVGDGRQGWPEFAPYDAIHVGAAAPEIP 156
Score = 40.4 bits (95), Expect = 3e-04
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 8 SNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSPHNFGTNSIVERPSY 62
N+ I+ LK ++V EA+ VDR+ F + Y D P + G + P
Sbjct: 2 RNEALIENLKNYGVIASDKVAEAMLAVDREEFVPESFKSYAYEDIPLSIGYGQTISAPHM 61
Query: 63 VSSC 66
+
Sbjct: 62 HAMM 65
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 68.7 bits (168), Expect = 5e-14
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
A + L +L PG VL++G GSG+ + +A +VG G V +++ IP+L +L+
Sbjct: 67 AMMTELL--ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR- 123
Query: 201 SYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
KL + V+ D + ++ PYD I+ + IP
Sbjct: 124 ------KLGLDNVIVIVGDGTQGWEPLAPYDRIYVTAAGPKIP 160
Score = 34.0 bits (78), Expect = 0.046
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 9 NQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKD-----GYIDSPHNFGTNSIVERPSYV 63
+ I L + + +RV++A+ V R+ F + Y+D+P G + P V
Sbjct: 7 KKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMV 66
Query: 64 S 64
+
Sbjct: 67 A 67
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 65.0 bits (159), Expect = 9e-13
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY 209
+L PG VL++G GSG+ + +AR+V G V +++ I +L L +
Sbjct: 69 ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNL-----ETLGYE 120
Query: 210 KIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ V D K + + PYD I + +P
Sbjct: 121 NV-TVRHGDGSKGWPEEAPYDRIIVTAAAPEVP 152
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 58.5 bits (142), Expect = 2e-10
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKL-Y 209
L G VL++G GSG+ + +A +VG G V ++ IP+L + L KL Y
Sbjct: 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAE-------KAKKTLKKLGY 126
Query: 210 KIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
++V+ D Y++N PYD I+ + IP
Sbjct: 127 DNVEVIVGDGTLGYEENAPYDRIYVTAAGPDIP 159
Score = 27.3 bits (61), Expect = 7.8
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 13 IQYLKENNFAQDERVLEAIQWVDRDRFA-----KDGYIDSPHNFG 52
I+ L + + ++V++A+ V R F + Y+D+P G
Sbjct: 10 IEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIG 54
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 47.5 bits (114), Expect = 1e-06
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
A + L K PG VL++G GSG+ + +A +V V +V+ I L +LK
Sbjct: 67 VARMTELLELK--PGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLK 121
Query: 200 ISYPKLYKLYKIMDVVEW-DARKPYKKNGPYDVIHFGSGVKHIP 242
+L L+ + V D K + P+D I + IP
Sbjct: 122 ----QL-GLHNV--SVRHGDGWKGWPAYAPFDRILVTAAAPEIP 158
Score = 28.6 bits (65), Expect = 2.7
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 10 QQFIQYLKENNFAQDERVLEAIQWVDRDRF-----AKDGYIDSPHNFGTNSIVERP 60
+ + L+ DERVLEAI+ R+ F Y + G + +P
Sbjct: 10 ARLVLRLRAE-GILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQP 64
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 43.8 bits (104), Expect = 5e-06
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
PGA VLD+G G+G ++ +AR+ VT VD P+++ L K L +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAK------LALGPRI 53
Query: 213 DVVEWDARKPYKKNGPYDVIHFG 235
V+ DA +D + G
Sbjct: 54 TFVQGDAPDALDLLEGFDAVFIG 76
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 45.7 bits (109), Expect = 7e-06
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 137 RRPQ-------AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
RR Q + L + PG+ VL+ G GSG ++ +AR VG +GHVT +
Sbjct: 73 RRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYE 126
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 43.1 bits (102), Expect = 7e-05
Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 11/104 (10%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
QA L+ + PG VL++G G G+ + +A +VG G VT VD + + L
Sbjct: 71 QAMMLEQA--GVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTVDIDEDVTDRARACLA 127
Query: 200 IS-YPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ YP++ VV DA + PYD I G IP
Sbjct: 128 AAGYPQV-------TVVLADAEAGVPELAPYDRIIVTVGAWDIP 164
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 42.6 bits (101), Expect = 8e-05
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191
+L PG VLDLG G GF AR VG G V VD P+++
Sbjct: 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML 115
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 41.8 bits (99), Expect = 1e-04
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
PG VLD+G G G + +AR VG +G V +D ++ L
Sbjct: 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLAL 59
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 41.0 bits (96), Expect = 2e-04
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK--LKISYPKLYKLYK 210
PG +L++G GSG+ + A + +G V V+ + +L ++ + ++ Y +
Sbjct: 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGY------WG 124
Query: 211 IMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+++V D ++ +K+ P+D I + IP
Sbjct: 125 VVEVYHGDGKRGLEKHAPFDAIIVTAAASTIP 156
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 41.8 bits (98), Expect = 2e-04
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMD 213
G VL++G G+G+ + M+R+VG+KG V +V++ +I+ + +L I +
Sbjct: 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY-------SRKICEIAKRNVRRL-GIEN 132
Query: 214 V--VEWDARKPYKKNGPYDVIHFGSGVKHIP 242
V V D + PYDVI GV +P
Sbjct: 133 VIFVCGDGYYGVPEFAPYDVIFVTVGVDEVP 163
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 40.0 bits (94), Expect = 5e-04
Identities = 27/65 (41%), Positives = 31/65 (47%), Gaps = 13/65 (20%)
Query: 131 RPDQVLR-----RPQAACLQHLSDKL-----LPGANVLDLGFGSGFMSCCMARMVGDKGH 180
PD +LR RPQ Q L+D L PG VLDL GSG ++ A G
Sbjct: 5 PPDALLRAPGVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGS 61
Query: 181 VTAVD 185
VTAVD
Sbjct: 62 VTAVD 66
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 40.0 bits (94), Expect = 5e-04
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH--VTAVD 185
CL+ L L G VLD+G GSG ++ A++ G V VD
Sbjct: 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKL----GAKKVVGVD 192
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 38.2 bits (89), Expect = 0.001
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 25/108 (23%)
Query: 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLF 194
R A L L +L PG VLD+G G+G + R++ ++G VT VD +
Sbjct: 5 RERFLARLLARLLPRLKPGGRVLDIGCGTGI----LLRLLRERGFDVTGVD-----PSPA 55
Query: 195 MTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ + DA P G YD+I ++H+P
Sbjct: 56 AVLIFSLF---------------DAPDPAVLAGKYDLITAFEVLEHLP 88
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 37.8 bits (88), Expect = 0.001
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
G VLDLG G+G+++ +A +G V +D + I
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEK 43
>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional.
Length = 445
Score = 38.5 bits (90), Expect = 0.002
Identities = 24/54 (44%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 140 QA-ACLQHLSDKLL---PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189
QA ACL LL PG+ VLDL G S MA ++ ++G +TAVD PQ
Sbjct: 239 QALACL------LLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQ 286
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 37.8 bits (89), Expect = 0.003
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
CL+ L +LPG VLD+G GSG ++ A +G K V AVD
Sbjct: 109 CLEALEKLVLPGKTVLDVGCGSGILA-IAAAKLGAK-KVLAVD 149
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 38.0 bits (89), Expect = 0.003
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
PG VLD+ G+G M+ +A+ VG G V +D ++ + KLK + +
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEF---- 105
Query: 213 DVVEWDARK-PYKKNGPYDVIHFGSGVKHIP 242
V DA P+ N +D + G++++
Sbjct: 106 --VVGDAENLPFPDNS-FDAVTISFGLRNVT 133
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 37.5 bits (87), Expect = 0.003
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
+L G +LD+G G+G ++ + +VG+ G V AVD + INL
Sbjct: 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINL 80
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 37.5 bits (87), Expect = 0.004
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191
CL+ L D L NV+D+G GSG +S A +G V +D P +
Sbjct: 149 CLEWLEDLDLKDKNVIDVGCGSGILSIA-ALKLGAAK-VVGIDIDPLAV 195
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 36.8 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L HL G VLDLG G G + +A+ D VT VD
Sbjct: 24 LSHLPKP--LGGKVLDLGCGYGVLGAALAKRSPD-LEVTMVD 62
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 36.4 bits (85), Expect = 0.006
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY-KI 211
G VL++G GSG ++ A+ V VD IN + + KL +
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKNGKK---VVGVD-----INPYAVECAKCNAKLNNIRNNG 74
Query: 212 MDVVEWDARKPYKKNGPYDVIHF 234
++V+ D +P++ + +DVI F
Sbjct: 75 VEVIRSDLFEPFRGD-KFDVILF 96
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 36.3 bits (85), Expect = 0.007
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
PG VLDL G+G ++ +A+ VG G V +D
Sbjct: 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLD 83
>gnl|CDD|183025 PRK11188, rrmJ, 23S rRNA methyltransferase J; Provisional.
Length = 209
Score = 36.2 bits (84), Expect = 0.008
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 148 SDKLL-PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
SDKL PG V+DLG G S +GDKG V A D +P
Sbjct: 45 SDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP 86
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 36.1 bits (84), Expect = 0.009
Identities = 19/99 (19%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
A L+ L+ +L +L++G G+ + MA + D G +T ++ + +
Sbjct: 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDE-------ERAE 98
Query: 200 ISYPKLYKLYKIMDVVE----WDARKPYKK--NGPYDVI 232
I+ + + D +E DA + +G +D++
Sbjct: 99 IAR-ENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 34.3 bits (79), Expect = 0.015
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMD 213
G VLD G GSG AR G V V+ P+ L + L L +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARA-GPDARVVGVELDPEAAAL----ARRRLA-LAGLAPRVR 54
Query: 214 VVEWDARK-PYKKNGPYDVIHF 234
VV DAR+ +G +D++
Sbjct: 55 VVVGDARELLELPDGSFDLVLG 76
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 34.2 bits (79), Expect = 0.019
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
PG + D+G G+G ++ AR+V G V A++ P+ ++L L+
Sbjct: 19 PGDVLWDIGAGTGSVTIEAARLVP-NGRVYAIERNPEALDLIERNLR 64
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 35.3 bits (82), Expect = 0.021
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
CL+ L + PG VLD+G GSG ++ ++ G K V VD P +
Sbjct: 150 CLEALESLVKPGETVLDVGCGSGILAIAALKL-GAK-KVVGVDIDPVAVR 197
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 33.6 bits (77), Expect = 0.024
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVV 215
VLDLG G+G ++ +A G VT VD P + L + + D V
Sbjct: 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELA---------RKAAAALLADNV 49
Query: 216 EW---DARK-PYKKNGPYDVIHF 234
E DA + P + + +DVI
Sbjct: 50 EVLKGDAEELPPEADESFDVIIS 72
>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase.
This model represents the
S-adenosylmethionine-dependent O-methyltransferase
responsible for methylation of magnesium protoporphyrin
IX. This step is essentiasl for the biosynthesis of both
chlorophyll and bacteriochlorophyll. This model
encompasses two closely related clades, from
cyanobacteria (and plants) where it is called ChlM and
other photosynthetic bacteria where it is known as BchM
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Chlorophyll and bacteriochlorphyll].
Length = 219
Score = 34.8 bits (80), Expect = 0.028
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 30/95 (31%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLINLFMTKLKISY 202
L L L G VLD G G+G +S +A +G V AVD Q++ +
Sbjct: 46 LDWLPKDPLKGKRVLDAGCGTGLLSIELA----KRGAIVKAVDISEQMVQM--------- 92
Query: 203 PKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSG 237
AR + + F
Sbjct: 93 ----------------ARNRAQGRDVAGNVEFEVN 111
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 32.6 bits (75), Expect = 0.037
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 158 LDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISY 202
LD+G G+G ++ +AR G VT VD P+++ L + +
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVDLSPEMLALARKRAPRKF 43
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 34.3 bits (79), Expect = 0.045
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD--HIP--QLINLFMTKLKISYPKLYKL 208
PG+ VL LG SG ++ +VG +G V AV+ H L N M K K
Sbjct: 132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTN--MAK---------KR 180
Query: 209 YKIMDVVEWDARKPYK 224
I+ ++E DAR P K
Sbjct: 181 PNIVPIIE-DARYPQK 195
>gnl|CDD|219979 pfam08704, GCD14, tRNA methyltransferase complex GCD14 subunit.
GCD14 is a subunit of the tRNA methyltransferase complex
and is required for 1-methyladenosine modification and
maturation of initiator methionyl-tRNA.
Length = 309
Score = 34.0 bits (78), Expect = 0.050
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 134 QVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
Q+L P + + + + L PG+ V + G GSG +S +AR V GH+ +
Sbjct: 84 QILYTPDISLIIMMLE-LKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFE 134
>gnl|CDD|232976 TIGR00438, rrmJ, cell division protein FtsJ. Methylates the 23S
rRNA. Previously known as cell division protein ftsJ.//
Trusted cutoff too high? [SS 10/1/04] [Protein
synthesis, tRNA and rRNA base modification].
Length = 188
Score = 33.3 bits (76), Expect = 0.068
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 148 SDKLL-PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
KL+ PG VLDLG G S VG KG V AVD P
Sbjct: 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP 67
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 33.3 bits (77), Expect = 0.070
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP----QLINLFMTKLKISYPKLYKL 208
PG+ VL LG SG ++ +VG +G V AV+ P +LIN+ + I P
Sbjct: 73 PGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINMAKKRPNI-VP----- 126
Query: 209 YKIMDVVEWDARKPYK 224
++E DAR P K
Sbjct: 127 -----ILE-DARHPQK 136
>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase;
Validated.
Length = 230
Score = 33.3 bits (77), Expect = 0.079
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 148 SDKLLPGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLINL 193
+D L G +LD G G G +S +AR G V A D PQ++
Sbjct: 58 ADGDLTGLRILDAGCGVGSLSIPLARR----GAKVVASDISPQMVEE 100
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 33.5 bits (77), Expect = 0.081
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 127 SLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDH 186
S S +P V R +A ++ G VL++G G+G+ + + +GD +VT+V+
Sbjct: 88 SSSTQPSLVARMLEALDVE-------DGHRVLEIGTGTGYSAALLCHRLGD-DNVTSVEV 139
Query: 187 IPQLINLFMTKL-KISY-PKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
P L + L Y P VV D + PYD I V+ +P
Sbjct: 140 DPGLAARAASALAAAGYAPT---------VVTGDGLLGHPPRAPYDRIIATCAVRRVP 188
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 33.0 bits (76), Expect = 0.088
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
PG + D+G G+G ++ A G G V A++ + + L
Sbjct: 32 PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALEL 73
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 32.6 bits (75), Expect = 0.14
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 28/91 (30%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP 203
L+ L G VLDLG G G + +A+ +T VD ++
Sbjct: 151 LETL--PPDLGGKVLDLGCGYGVLGLVLAKKSPQA-KLTLVD--------------VNAR 193
Query: 204 KLYKLYKIMDVVEWDARKPYKKNGPYDVIHF 234
+ ARK NG + +
Sbjct: 194 AV-----------ESARKNLAANGVENTEVW 213
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 32.3 bits (74), Expect = 0.18
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 148 SDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI---NLFMTK---LKIS 201
+ K L G VLD+G G G +S +AR+ +VT +D + I L K LKI
Sbjct: 40 NKKPLFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIE 96
Query: 202 Y 202
Y
Sbjct: 97 Y 97
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 32.2 bits (70), Expect = 0.19
Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 10/126 (7%)
Query: 122 AKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHV 181
+ + L + L L G VLD+G G+G ++ +AR+ G +V
Sbjct: 17 DRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYV 75
Query: 182 TAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK---PYKKNGPYDVIHFGSGV 238
VD P+++ L + + ++D V DA P++ + +D++ +
Sbjct: 76 VGVDLSPEMLALARARAE------GAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129
Query: 239 KHIPIE 244
+P
Sbjct: 130 HLLPPA 135
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 31.9 bits (73), Expect = 0.26
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191
LPG VLD+G G G +S +AR+ VT +D + I
Sbjct: 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPI 94
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 31.5 bits (72), Expect = 0.29
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
G VLD+ G+G ++ +A+ D+G VT VD +++ +
Sbjct: 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEV 79
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 31.3 bits (71), Expect = 0.37
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKL-YK 210
G LD+ G+G + ++ G G V +D IN M LK K +
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLD-----INENM--LKEGEKKAKEEGKY 98
Query: 211 IMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
++ ++ +A + ++ +D++ G+++ P
Sbjct: 99 NIEFLQGNAEELPFEDDSFDIVTISFGLRNFP 130
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 31.5 bits (72), Expect = 0.40
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 131 RPDQVLRRPQAACLQHLSDK--LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
PD L Q A L + +K L PG +LD+G G G ++ A G V V
Sbjct: 48 DPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVT 102
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 30.6 bits (69), Expect = 0.56
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMD 213
G VLDL GSG ++ ++ VG G V +D + + + ++ ++ K YK ++
Sbjct: 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQEL---KAKSCYKNIE 130
Query: 214 VVEWDARKPYKKNGPYDVIHFGSGVKHI 241
+E DA + +D I G G++++
Sbjct: 131 WIEGDATDLPFDDCYFDAITMGYGLRNV 158
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 30.8 bits (70), Expect = 0.63
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVG 176
L HLS L G +LD+G G+G+ M RM+G
Sbjct: 108 LPHLSP--LKGRTILDVGCGNGYH---MWRMLG 135
>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 338
Score = 30.6 bits (70), Expect = 0.73
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 139 PQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMA 172
P + L PG V LG GSG ++C M
Sbjct: 302 PITLAMAAEEGFLKPGDRVALLGIGSG-LNCSML 334
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 30.4 bits (69), Expect = 0.73
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+LDLG GSG ++ +A+ D V AVD
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPD-AEVIAVD 141
>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family.
Members of this family are methyltransferases that mark
a widely distributed large conserved gene neighborhood
of unknown function. It appears most common in soil and
rhizosphere bacteria.
Length = 226
Score = 30.1 bits (68), Expect = 0.87
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
L G +VLD+G +GF S M R G V +D P
Sbjct: 48 LSGWSVLDIGCNAGFYSIEMKRR--GAGRVLGIDSDP 82
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 30.3 bits (69), Expect = 0.94
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 183 AVDHIPQLINLFMTKLKIS--YPKLYKLYKIMDVVEWDARK 221
A++H P L+ L+MTK +I L K + M+ +AR
Sbjct: 219 AIEHTPTLVELYMTKARILKHAGDLQKAAEAME----EARS 255
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 30.1 bits (69), Expect = 1.0
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L VLDLG GSG ++ +A+ D VTAVD
Sbjct: 105 LLKEPLRVLDLGTGSGAIALALAKERPDA-EVTAVD 139
>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.
Length = 251
Score = 29.7 bits (67), Expect = 1.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 133 DQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQLI 191
++ R+ A L L + +VLD G G G+MS R ++G VTA+D P ++
Sbjct: 24 AELQRQSADALLAMLPQRKF--THVLDAGCGPGWMS----RYWRERGSQVTALDLSPPML 77
Query: 192 N 192
Sbjct: 78 A 78
>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.
Length = 287
Score = 29.9 bits (68), Expect = 1.2
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQ-LINLFMTKLKISYPKLYK 207
+ + LDLG G G S +A G VTAVD Q L NL K +
Sbjct: 117 QTVKPGKALDLGCGQGRNSLYLAL----LGFDVTAVDINQQSLENLQEIAEKENLNIRTG 172
Query: 208 LYKI 211
LY I
Sbjct: 173 LYDI 176
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 29.4 bits (67), Expect = 1.6
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
A L+ L VLDLG GSG ++ +A+ VTAVD
Sbjct: 79 AALERLKKG---PLRVLDLGTGSGAIALALAKER-PDARVTAVD 118
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 29.1 bits (66), Expect = 1.7
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 153 PGANVLDLGFGSG-FMSCCMARMVGDKGHVTAVD 185
G VLDLG G F + R G G V AVD
Sbjct: 22 KGKTVLDLGAAPGGFSQVLLER--GGAGKVVAVD 53
>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9
3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol
methylase; Provisional.
Length = 233
Score = 29.0 bits (66), Expect = 1.8
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L G VLD+G G G +S MAR+ G VT +D
Sbjct: 47 LFGKRVLDVGCGGGILSESMARL-G--ADVTGID 77
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 28.5 bits (64), Expect = 2.3
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 157 VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
V+D+G G S AR +G V A + +P
Sbjct: 2 VIDVGANIGDFSLYFARKGA-EGRVIAFEPLPDAYE 36
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 28.3 bits (63), Expect = 2.6
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKI 211
L +VL++G G+G ++ R+ G + D IN F K KL
Sbjct: 18 LKPDDVLEIGAGTGLVA---IRLKGKGKCILTTD-----INPFAVKELRENAKLNN--VG 67
Query: 212 MDVVEWDARKPYKKNGPYDVIHF 234
+DVV D K + G +DVI F
Sbjct: 68 LDVVMTDLFKGVR--GKFDVILF 88
>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase. Members of this
family are O-methyltransferases. The family includes
catechol o-methyltransferase, caffeoyl-CoA
O-methyltransferase and a family of bacterial
O-methyltransferases that may be involved in antibiotic
production.
Length = 204
Score = 28.5 bits (64), Expect = 2.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
KL+ L++G +G+ A + + G +TA D
Sbjct: 41 KLIGAKRTLEIGVFTGYSLLATALALPEDGKITACD 76
>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase.
MenG is a generic term for a methyltransferase that
catalyzes the last step in menaquinone biosynthesis; the
exact enzymatic activity differs for different MenG
because the menaquinone differ in their prenoid side
chains in different species. Members of this MenG
protein family are 2-heptaprenyl-1,4-naphthoquinone
methyltransferase, and are found together in operons
with the two subunits of the heptaprenyl diphosphate
synthase in Bacillus subtilis and related species
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 231
Score = 28.6 bits (64), Expect = 2.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 154 GANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
G + LD+ G+ S +A VG +GHV +D
Sbjct: 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLD 77
>gnl|CDD|173056 PRK14592, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 165
Score = 28.1 bits (63), Expect = 2.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 16 LKENNFAQDERVLEAIQWVDRDRFAKDGYIDSPHNFGTNSIVE 58
L E+ F Q + + ++ D + GYI +NFG+ I+E
Sbjct: 87 LNEDEFYQSDLIGMEVKLEDNTIY---GYIKKIYNFGSCDIIE 126
>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 28.4 bits (64), Expect = 3.0
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK 210
L G VLDLG G+G ++ A + G V AVD P+ + + + +L
Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALL-GAS-RVLAVDIDPEALEIARANAE-------ELLG 93
Query: 211 IMDVVEWDARKPYKKNGPYDVI----HFGSGVKHIPIEV 245
++ V D G +D + FGS +H
Sbjct: 94 DVEFVVADVSDF---RGKFDTVIMNPPFGSQRRHADRPF 129
>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional.
Length = 444
Score = 28.6 bits (65), Expect = 3.1
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD---HIPQLINLFMTKLKISYPKLYKLY 209
G VLD G + +A ++ + G V A+D H +LI +L ++
Sbjct: 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-------- 301
Query: 210 KIMDVVEWDARKPYKK-NGPYDVI 232
++ DARK ++K +D I
Sbjct: 302 -NIETKALDARKVHEKFAEKFDKI 324
>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase. The
cytidylyltransferase family includes cholinephosphate
cytidylyltransferase (CCT), glycerol-3-phosphate
cytidylyltransferase, RafE and phosphoethanolamine
cytidylyltransferase (ECT). All enzymes catalyze the
transfer of a cytidylyl group from CTP to various
substrates.
Length = 136
Score = 27.6 bits (62), Expect = 3.4
Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 21 FAQDER--VLEAIQWVDRDRFAKDGYIDSPHNFGTNSIVERPSYVSSCSIWYLVICLGKG 78
+++R V+EA+++VD + + P ++ +P + K
Sbjct: 50 LPEEQRAEVVEALKYVD------EVILGHPWSYFKPLEELKPDVIVLGDDQ-------KN 96
Query: 79 SKSIFQTYGIVSGNKGIHFLPFYQFYLIS 107
+ Y + + +P + IS
Sbjct: 97 GVDEEEVYEELKKRGKVIEVPRKKTEGIS 125
>gnl|CDD|227135 COG4798, COG4798, Predicted methyltransferase [General function
prediction only].
Length = 238
Score = 27.9 bits (62), Expect = 4.8
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAV 184
L PGA V+DL G G+ + + VG KG V A
Sbjct: 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAY 79
>gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family
consist of Cyclopropane-fatty-acyl-phospholipid synthase
or CFA synthase EC:2.1.1.79 this enzyme catalyze the
reaction: S-adenosyl-L-methionine + phospholipid
olefinic fatty acid <=> S-adenosyl-L-homocysteine +
phospholipid cyclopropane fatty acid.
Length = 273
Score = 27.7 bits (62), Expect = 5.5
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 131 RPDQVLRRPQAACLQHLSDK--LLPGANVLDLGFGSGFMSCCMAR 173
RPD L Q A L + DK L PG +LD+G G G + A
Sbjct: 38 RPDMTLEEAQQAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAE 82
>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase. This model
describes a set of proteins with homology in its central
region to a large number of methyltransferases active on
a variety of substrates. The similarity includes a motif
resembling ILDVGCG[SG]G. Known examples to date are
restricted to the proteobacteria [Unknown function,
Enzymes of unknown specificity].
Length = 314
Score = 27.6 bits (61), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH 180
L HLS L G +LD+G GSG+ M RM+G
Sbjct: 114 LPHLSP--LKGRTILDVGCGSGYH---MWRMLGHGAK 145
>gnl|CDD|219580 pfam07793, DUF1631, Protein of unknown function (DUF1631). The
members of this family are sequences derived from a
group of hypothetical proteins expressed by certain
bacterial species. The region concerned is approximately
440 amino acid residues in length.
Length = 729
Score = 27.6 bits (62), Expect = 6.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 119 ALSAKASHSLSGRPDQVLRRPQAACLQHLSDKL 151
S A S R +L + + Q L L
Sbjct: 1 TASLPAPKSSPPRLPVLLVQVRDKAAQQLRQLL 33
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 27.7 bits (62), Expect = 7.4
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 1 MKSYDITSNQQFIQYLKE--NNFAQDER----VLEAI---QWVDRDRFAKDGYIDSPHNF 51
+S D S Q LK +N + +R ++EAI W+ RD + YI F
Sbjct: 43 AESKDDISVAQLQILLKALSSNVSLLDRSCNGLVEAILSLNWLGRDESFVEAYIQ----F 98
Query: 52 GTNSIVERPSYVSSCS 67
N + + Y+
Sbjct: 99 LGNLVSAQGKYLGEVL 114
>gnl|CDD|164861 PHA01630, PHA01630, putative group 1 glycosyl transferase.
Length = 331
Score = 27.4 bits (61), Expect = 8.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 188 PQLINLFMTKLKISYPKLYKLYKIMDV 214
P+L L K + +Y L+ D+
Sbjct: 186 PRLFGLNGVKTPLPDDDIYSLFAGCDI 212
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 27.4 bits (61), Expect = 8.3
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 12 FIQYLKENNFAQDERVLEAIQWVDRDRFAKDGYIDSPHNF 51
F+++L E++F + + I W +++RF K Y+ S NF
Sbjct: 217 FLEFLIEDDFEHLRKTMPLI-WREKERFEKALYVKSDANF 255
>gnl|CDD|236330 PRK08665, PRK08665, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 752
Score = 27.6 bits (62), Expect = 8.4
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 165 GFMSCCMARMVGDKGHVTAVDHIPQLI-NLFMTKLKIS 201
GF S + + +KG + +D +P+ + +F+T IS
Sbjct: 472 GFYSEELMEKIAEKGSIQDIDEVPEDVRRVFVTAHDIS 509
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,911,621
Number of extensions: 1203671
Number of successful extensions: 1126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 85
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)