RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy425
(254 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 87.6 bits (218), Expect = 4e-21
Identities = 39/102 (38%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
A L+ L D+L GA LD+G GSG ++ C ARMVG G V +DHI +L++ + ++
Sbjct: 65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRK 124
Query: 201 SYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
P L ++ VV D R Y + PYD IH G+ +P
Sbjct: 125 DDPTLLSSGRVQLVVG-DGRMGYAEEAPYDAIHVGAAAPVVP 165
Score = 45.2 bits (108), Expect = 6e-06
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 7 TSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-YIDSP 48
S+ + I L++N + ++V E + DR +AK Y+DSP
Sbjct: 7 ASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCNPYMDSP 49
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 81.5 bits (202), Expect = 7e-19
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKG-----HVTAVDHIPQLINLFM 195
A L++L D L PGA +LD+G GSG+++ C R + KG + ++H +L+
Sbjct: 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSK 131
Query: 196 TKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
L + ++ +VE D RK Y N PY+ IH G+ P
Sbjct: 132 ANLNTDDRSMLDSGQL-LIVEGDGRKGYPPNAPYNAIHVGAAAPDTP 177
Score = 44.2 bits (105), Expect = 1e-05
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 7 TSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-YIDSP 48
+N+ I+ LK++ + V +A++ DR ++ Y+D+P
Sbjct: 14 ANNEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRNPYMDAP 56
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 76.9 bits (190), Expect = 3e-17
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMAR----MVGDKGHVTAVDHIPQLINLFMT 196
A L+ L + L PG+ +D+G GSG+++ CMA + +V ++ + L+N +
Sbjct: 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 197 KLKISYPKLYKLYKIMDVV---EWDARKPYKKNGPYDVIHFGSGVKHIP 242
+K P+L K+ + + K+ G +D IH G+ +P
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASELP 176
Score = 42.6 bits (101), Expect = 3e-05
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 8 SNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-YIDSP 48
+++ ++ LK D+ V + VDR ++ K+ YID+P
Sbjct: 11 NHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKEIPYIDTP 52
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 74.9 bits (185), Expect = 1e-16
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
+ L L PG VL++G G G+ + A +VG+ G V +++ IP+L +
Sbjct: 67 GMMCELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPEL-------AEK 117
Query: 201 SYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ L KL Y + V+ D Y+ PYD I+ + IP
Sbjct: 118 AERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIP 160
Score = 38.3 bits (90), Expect = 0.001
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 8 SNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSP 48
+ I+ L + + +RV++A+ V R+ F + Y+D+P
Sbjct: 6 QKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTP 51
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 71.1 bits (175), Expect = 5e-15
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
A L+ L PG N+L++G GSG+ + ++ +V V ++ IP+L ++
Sbjct: 81 AIMLEIA--NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPEL-------VEF 129
Query: 201 SYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ L + K + V+ D K + PYDVI +G IP
Sbjct: 130 AKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIP 172
Score = 40.3 bits (95), Expect = 2e-04
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 8 SNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSP 48
+ ++ LK + + V A R +D +ID P
Sbjct: 20 KWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEP 65
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 71.7 bits (176), Expect = 8e-15
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
A ++ + L G VL++G G+G+ + M+R+VG+KG V +V++ ++ +
Sbjct: 64 MALFMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKI-------CE 114
Query: 200 ISYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
I+ + +L + + V D + PYDVI GV +P
Sbjct: 115 IAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVGVDEVP 158
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 70.0 bits (172), Expect = 1e-14
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
L L L G VL++G G G+ + +A +V V +V+ ++
Sbjct: 60 IFMLDEL--DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKM-------YNY 107
Query: 201 SYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ L I ++ D Y++ PYD + + +
Sbjct: 108 ASKLLSYYNNI-KLILGDGTLGYEEEKPYDRVVVWATAPTLL 148
Score = 29.1 bits (66), Expect = 0.96
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 24 DERVLEAIQWVDRDRFAKDGYID 46
+ + EA VDR F + D
Sbjct: 13 TQELAEAFNKVDRSLFLPENLKD 35
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 64.5 bits (158), Expect = 7e-13
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
A + L +L P + VL++G GSG+ + +A +V HV +V+ I L
Sbjct: 67 ARMTELL--ELTPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGL-------QWQ 114
Query: 201 SYPKLYKL-YKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ +L L + D + ++ P+D I + IP
Sbjct: 115 ARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIP 157
Score = 31.8 bits (73), Expect = 0.12
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 10 QQFIQYLKENNFAQDERVLEAIQWVDRDRFAKDG-----YIDSP 48
Q + L+ QDE+VL A+ V R++F + + +
Sbjct: 9 QALLDQLRAQGI-QDEQVLNALAAVPREKFVDEAFEQKAWDNIA 51
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 56.5 bits (136), Expect = 5e-10
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 133 DQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
++ ++ + G V+D G+G + +A +VG+ G V D + I
Sbjct: 2 SLTIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIA 61
Query: 193 LFMTKLK 199
KL
Sbjct: 62 NTTKKLT 68
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 53.5 bits (128), Expect = 1e-08
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK 210
L GA VLDLG G+G +++VG+ G V VD + + + ++ K +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 211 IMDVVEW---------DARKPYKKNGPYDVIHFGSGVKHIP 242
+ V + A + D++
Sbjct: 141 RSN-VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLST 180
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 53.1 bits (127), Expect = 2e-08
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 12/122 (9%)
Query: 130 GRPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHI 187
+ ++R Q A +++ PG +L++G G G +S +A VG GHVT +D I
Sbjct: 18 TANARTIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID-I 76
Query: 188 PQLINLFMTKLKISYPKLYKLYKIMDVVEW-------DARKPYKKNGPYDVIHFGSGVKH 240
L ++ L + D + D P +D + + +
Sbjct: 77 ASPDYGAPLTLGQAWNHLLAG-PLGDRLTVHFNTNLSDDLGPIADQ-HFDRVVLAHSLWY 134
Query: 241 IP 242
Sbjct: 135 FA 136
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 51.9 bits (124), Expect = 5e-08
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
L + K+ +++D G G G++ + ++ + T +D L+
Sbjct: 13 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 50.8 bits (122), Expect = 5e-08
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L G VLD+G G+GF +++MVG+KG V A+D
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID 69
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 49.3 bits (117), Expect = 2e-07
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 130 GRPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHI 187
R R AA L +L G +L LG SG + M+ ++G +G + V+
Sbjct: 52 YREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA 111
Query: 188 PQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHF 234
P+++ +T ++ I ++ DAR P K + +
Sbjct: 112 PRVMRDLLTVVR-------DRRNIFPILG-DARFPEKYRHLVEGVDG 150
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 49.3 bits (117), Expect = 2e-07
Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 16/99 (16%)
Query: 137 RRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196
P+ LS L P VL+ G G G + A D P+L+ L
Sbjct: 32 PDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQA---ARWAAYDFSPELLKLARA 88
Query: 197 KLKISYPKLYKLYKIMDVVEWDARK--PYKKNGPYDVIH 233
P DV EW+ + P P+ +I
Sbjct: 89 N----APHA-------DVYEWNGKGELPAGLGAPFGLIV 116
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 49.5 bits (117), Expect = 5e-07
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
Query: 132 PDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191
P R L+H+ + + ++D G GSG + + + VD P+ +
Sbjct: 704 PLSKQRV--EYALKHI--RESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGL 759
Query: 192 NLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
L + K K + + + + D+ ++H+
Sbjct: 760 ARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHME 810
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 48.3 bits (114), Expect = 8e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 139 PQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
P+ + + PG VL+ G GSG MS +++ VG +G V + + +L
Sbjct: 91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL 145
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 47.5 bits (113), Expect = 1e-06
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 126 HSLSGRPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVGDKGHVTA 183
++S ++ L L PG +LDLG GSG M C AR G T
Sbjct: 7 FTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTG 64
Query: 184 VD 185
+D
Sbjct: 65 ID 66
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 47.3 bits (112), Expect = 1e-06
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 130 GRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189
R Q++ AA + + + PG +++ G GSG ++ +A +VG +G V + +
Sbjct: 71 KRGPQIVHPKDAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIRED 129
Query: 190 LINLFMTKLKISYPKLYKLYKIMDVVEWDARKPY 223
L +K + K+ D+ E +
Sbjct: 130 FAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV 163
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 46.4 bits (110), Expect = 2e-06
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 18/107 (16%)
Query: 137 RRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFM 195
R+P++A L +L GA +L+LG G+G+ + M G V A D P+L
Sbjct: 27 RQPRSATLTKFLGELPAGAKILELGCGAGYQAEAML----AAGFDVDATDGSPELAAEAS 82
Query: 196 TKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+L + M + DA YD + + + H+P
Sbjct: 83 RRLGRP-------VRTMLFHQLDA------IDAYDAVWAHACLLHVP 116
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 46.5 bits (109), Expect = 3e-06
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
L+ L + G +VLDLG G ++ +A G + +D +LI+
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIH 84
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 46.2 bits (109), Expect = 3e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
+ G ++D G GSG M +AR VG G V A + + L
Sbjct: 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL 152
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 45.2 bits (107), Expect = 6e-06
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 13/118 (11%)
Query: 129 SGRPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDH 186
D + + L G VLD+G G G + +A VT +
Sbjct: 35 DAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARD--VRVTGIS- 91
Query: 187 IPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARK-PYKKNGPYDVIH-FGSGVKHIP 242
I+ + L + DA P+ ++ +D + S H+P
Sbjct: 92 ----ISRPQVNQANARATAAGLANRVTFSYADAMDLPF-EDASFDAVWALESLH-HMP 143
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 45.5 bits (107), Expect = 6e-06
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 134 QVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
Q++ A+ + L PG ++L++G GSG MS + + KG +T V+ +
Sbjct: 92 QIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK 150
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 45.5 bits (107), Expect = 7e-06
Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Query: 110 REVGMGPSSALSAKASHSLSGRPDQVL--RRPQAACLQHLSDKLLPGANVLDLGFGSGFM 167
R V P S A R VL R + L L PG V + G
Sbjct: 73 RLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVVASVPCGWMSE 132
Query: 168 SCCMARMVGDKGHVTAVD 185
+ + +D
Sbjct: 133 LLALDYSACPGVQLVGID 150
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 44.9 bits (106), Expect = 7e-06
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFM 195
R + L K V+DLG G G + + + + +T VD + + +
Sbjct: 16 QRM--NGVVAAL--KQSNARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIAQ 70
Query: 196 TKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+L ++ + +++ K+ YD ++H+
Sbjct: 71 ERLD-RLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLD 116
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 44.9 bits (106), Expect = 9e-06
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 133 DQVLRRPQAACLQHLSDKLL---PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189
+ + QA L+ L PGA VL+ G G G + +A+ D +T++D P+
Sbjct: 14 EALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPE 72
Query: 190 LINL 193
+
Sbjct: 73 SLEK 76
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 43.5 bits (103), Expect = 2e-05
Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 11/112 (9%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKI 200
+ + +D+G G+G ++ +A V V A+D P+ I+ L
Sbjct: 23 CLIMCLA--EPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNL-- 75
Query: 201 SYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIEVSKLCRSQ 252
+ + L + ++E DA + K D+ G + E+ ++ + +
Sbjct: 76 ---QRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQ-EILRIIKDK 123
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 43.5 bits (102), Expect = 2e-05
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 147 LSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLY 206
L +L P +L LG G+ +S + +VT+VD+ ++ Y
Sbjct: 36 LEPELRPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQAC--------Y 85
Query: 207 KLYKIMDVVEWDARKPYKKNGPYDVIH 233
+ D RK + +DV+
Sbjct: 86 AHVPQLRWETMDVRKLDFPSASFDVVL 112
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 43.7 bits (103), Expect = 2e-05
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 123 KASHSLSGRPDQVLRR-PQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHV 181
++ + ++ ++ + + A VLD+G G G+ + ++R
Sbjct: 22 SSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTG---YKA 78
Query: 182 TAVD 185
VD
Sbjct: 79 VGVD 82
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 42.7 bits (101), Expect = 2e-05
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFM 195
L RP+ L ++ + ++D G G+GF + + +D +
Sbjct: 3 LERPEEY-LPNIFEG--KKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVK 56
Query: 196 TKLK 199
K
Sbjct: 57 EKFD 60
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 42.9 bits (101), Expect = 4e-05
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 7/98 (7%)
Query: 147 LSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLY 206
++L A + D+G G+G + +A V G +T +D P I +F
Sbjct: 40 FINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENA-----VKA 92
Query: 207 KLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIE 244
+ + +N D+I + +I E
Sbjct: 93 NCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE 130
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 42.8 bits (101), Expect = 4e-05
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 17/107 (15%)
Query: 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFM 195
+ + LQ L+ + PG +LDLG G+G ++ +A+ V D+ +I
Sbjct: 42 VWQYGEDLLQLLNPQ--PGEFILDLGCGTGQLTEKIAQSG---AEVLGTDNAATMI---- 92
Query: 196 TKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
K + +YP L+ + + D + + P D + + + +
Sbjct: 93 EKARQNYPHLH--FDVADARNFRV------DKPLDAVFSNAMLHWVK 131
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 42.2 bits (99), Expect = 5e-05
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Query: 145 QHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPK 204
L + VLDL G G S + V VD +I K
Sbjct: 30 PLLMKYMKKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESN 86
Query: 205 LYKLYKIMDVVEWDARK-PYKKNGPYDVIHFGSGVKHIPIE 244
+ + + DARK + ++ +D + F + H
Sbjct: 87 V-------EFIVGDARKLSF-EDKTFDYVIFIDSIVHFEPL 119
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 42.9 bits (100), Expect = 5e-05
Identities = 12/96 (12%), Positives = 31/96 (32%), Gaps = 11/96 (11%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSC-CMARMVGDKGHVTAVDHIPQLINLFMTKLKISY 202
+ + G + +G G ++ ++ + G V V+ P + L ++
Sbjct: 113 NEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG--MRVNVVEIEPDIAELSRKVIE--- 167
Query: 203 PKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGV 238
++V+ D +DV+ +
Sbjct: 168 ---GLGVDGVNVITGDETVI--DGLEFDVLMVAALA 198
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 42.4 bits (99), Expect = 5e-05
Identities = 20/80 (25%), Positives = 36/80 (45%)
Query: 139 PQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKL 198
P+ A L PG VL+ G GSG ++ +AR VG+KG V + + P + +
Sbjct: 82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV 141
Query: 199 KISYPKLYKLYKIMDVVEWD 218
+ + + + + E +
Sbjct: 142 RAFWQVENVRFHLGKLEEAE 161
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 42.6 bits (100), Expect = 5e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 149 DKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191
D L + + D+G G+G + +A V G VT +D + I
Sbjct: 42 DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFI 82
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 42.0 bits (98), Expect = 7e-05
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
G VL LG SG ++ ++ G V+ P+++ + + + I
Sbjct: 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ-------RRPNIF 128
Query: 213 DVVEWDARKPYKKNGPYDVIHF 234
++ DAR P + +
Sbjct: 129 PLLA-DARFPQSYKSVVENVDV 149
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 8e-05
Identities = 45/336 (13%), Positives = 93/336 (27%), Gaps = 116/336 (34%)
Query: 10 QQFIQYLKENNFA------QDE---RVLEAIQWVD-RDRFAKDGYIDSPHNFGTNSIVER 59
Q+F++ + N+ + E + +++ RDR D + + +N V R
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN------VSR 133
Query: 60 PSYVSSCSIW--------YLVIC--LGKGSKSIFQTYGIVSGNKGIHFLPFYQFYL-ISH 108
++I LG G K+ + K + F F+L + +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSG-KTWV-ALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 109 LREVG--MGPSSALSAKASHSLSGRPDQVLRRP------QAACLQHLSDKLLPGA----- 155
+ L + + + R D QA + L K
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 156 NVLDLGFGSGF-MSCCMARMV---GDKG-----------HVT------------------ 182
NV + + F +SC +++ K H++
Sbjct: 252 NVQNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 183 -------------AVDHIPQLINLFMTKLK-----ISYPKLYKLYKIMDVVE-------- 216
+ P+ +++ ++ K K+ ++E
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 217 WDARKPYKKNG--PYDVIHFGSGVKHIPIEVSKLCR 250
+ RK + + P HIP + L
Sbjct: 369 AEYRKMFDRLSVFPPSA--------HIPTIL--LSL 394
Score = 41.4 bits (96), Expect = 2e-04
Identities = 38/278 (13%), Positives = 79/278 (28%), Gaps = 90/278 (32%)
Query: 5 DITSNQQFIQYLKENNFAQDERVLEAIQWVDRDRFAKD---GYI-DSPHNFGTNS----I 56
D + + QY +D +L V D F + + D P + + I
Sbjct: 8 DFETGEHQYQY-------KD--ILS----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 57 VERPSYVSSCSIWYLVICLGKGSKSIFQTY--GIVSGNKGIHFLPFYQFYLISHLREVGM 114
+ VS L L + + Q + ++ N Y+F L+S ++
Sbjct: 55 IMSKDAVSG--TLRLFWTLLSKQEEMVQKFVEEVLRIN--------YKF-LMSPIKTEQR 103
Query: 115 GPS-------SALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVL---DLGFGS 164
PS + + V R L+ +L P NVL LG G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 165 GFMSCCMARMVGDK---------------GHVTAVDHIPQLINLFMTKLKISYPKL---- 205
+ + + + + + +++ + ++ ++
Sbjct: 164 ---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 206 -------------------YKLYK----IMDVVEWDAR 220
K Y+ ++ V +A+
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAK 257
Score = 38.7 bits (89), Expect = 0.001
Identities = 38/253 (15%), Positives = 70/253 (27%), Gaps = 83/253 (32%)
Query: 7 TSNQQFIQYLKENN----------FAQD----ERVLEAIQWVDRDRFAKDGYIDSPHNFG 52
T + + L+ F +L + W D + ++ H +
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKY- 414
Query: 53 TNSIVERPSYVSSCSIW--YLVI---CLGKGS--KSIFQTYGIVSGNKGIHFLP------ 99
S+VE+ S+ SI YL + + + +SI Y I +P
Sbjct: 415 --SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 100 FYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLD 159
FY ++ HL+ + L R + LD
Sbjct: 473 FYS-HIGHHLKNIEHPERMTL---------------FR------------MVF-----LD 499
Query: 160 LGF------GSGFMSCCMARMVGD-------KGHVTAVDHIP---QLINLFMTKLKISYP 203
F ++ K ++ D+ P +L+N + L
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAILDFLPKIEE 557
Query: 204 KLYKLYKIMDVVE 216
L K D++
Sbjct: 558 NLIC-SKYTDLLR 569
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 41.9 bits (99), Expect = 8e-05
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189
L+ L+ L PG VLDLG GSG ++ A +G G VD P
Sbjct: 110 ALKALARHLRPGDKVLDLGTGSGVLA-IAAEKLG--GKALGVDIDPM 153
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 41.3 bits (97), Expect = 1e-04
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 147 LSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLY 206
++ ++LDLG G+G +S + + T VD +++ + + +
Sbjct: 38 IASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKNRFR------- 89
Query: 207 KLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIE 244
K+ +E D K Y YD++ + H+ E
Sbjct: 90 GNLKV-KYIEADYSK-YDFEEKYDMVVSALSIHHLEDE 125
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 41.2 bits (96), Expect = 1e-04
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 138 RPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
R L P ++D G+G + +++ V +D
Sbjct: 41 RAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGLD 85
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 40.9 bits (96), Expect = 1e-04
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 122 AKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHV 181
+ S +L ++ + +D+G G G +S +A+ +
Sbjct: 18 DEISKTLFAPIYPIIAENIINRFG------ITAGTCIDIGSGPGALSIALAKQSD--FSI 69
Query: 182 TAVD 185
A+D
Sbjct: 70 RALD 73
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 40.7 bits (95), Expect = 2e-04
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 135 VLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLF 194
R + L K + V+DLG G G + + + + +T VD ++
Sbjct: 15 QQRL--GTVVAVL--KSVNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERA 69
Query: 195 MTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+LKI + +I + + K+ YD
Sbjct: 70 KDRLKIDRLPEMQRKRI-SLFQSSLVYRDKRFSGYDAA 106
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.9 bits (96), Expect = 2e-04
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
VLD+G G+G + + V VD
Sbjct: 21 AEHRVLDIGAGAGHTALAFSPYV---QECIGVD 50
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 41.0 bits (96), Expect = 2e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 129 SGRPDQVLRRPQAACLQHLSDKLL------PGANVLDLGFGSGFMSCCMARMVGDKGHVT 182
+R + L+ +L A LDLG G G + + R G +
Sbjct: 52 EPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSID 109
Query: 183 AVD 185
++
Sbjct: 110 CLN 112
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 40.3 bits (94), Expect = 2e-04
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 19/116 (16%)
Query: 127 SLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDH 186
+ D +VL+L G+G+ + ++ + VTA+D
Sbjct: 25 TFVPYMDSAAPAALERLRA-----GNIRGDVLELASGTGYWTRHLSGLA---DRVTALDG 76
Query: 187 IPQLINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
++I + ++ D+ +W + +D + F + H+P
Sbjct: 77 SAEMIAEAGRHG---LDNVE--FRQQDLFDWTP------DRQWDAVFFAHWLAHVP 121
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 40.3 bits (94), Expect = 3e-04
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 15/110 (13%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
+ DLG G+G +A + +K VT + ++ + + P +
Sbjct: 36 RACRIADLGAGAGAAGMAVAARL-EKAEVTLYERSQEMAE--FARRSLELPDNAAFSARI 92
Query: 213 DVVEWDARKPYKKNGP-------YDVI-----HFGSGVKHIPIEVSKLCR 250
+V+E D K + + + +G + P +
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAH 142
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 39.9 bits (93), Expect = 3e-04
Identities = 9/59 (15%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 134 QVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
++R+PQ ++ VLD G G + G ++ +
Sbjct: 4 TIIRQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLK 60
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 39.8 bits (92), Expect = 4e-04
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 139 PQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKL 198
P+ A + PGA VL+ G GSG ++ + R VG G V + + +
Sbjct: 85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 144
Query: 199 KISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHF 234
Y + +V D +G D
Sbjct: 145 SGCYG---QPPDNWRLVVSDLADSELPDGSVDRAVL 177
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 39.5 bits (93), Expect = 4e-04
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 6/93 (6%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
L L+ ++ V+ G G G S AR + V +D + +
Sbjct: 44 TGRLLYLLA-RIKQPQLVVVPGDGLGCASWWFARAISISSRVVMID-----PDRDNVEHA 97
Query: 200 ISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
L +++ D D++
Sbjct: 98 RRMLHDNGLIDRVELQVGDPLGIAAGQRDIDIL 130
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 39.6 bits (92), Expect = 5e-04
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKL-YKI 211
++D+G G G + MA+ + + D +I + S + +KI
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI 95
Query: 212 MDVVEWDARKP-YKKNGPYDVIHFGSGVKHIPIE 244
++ D+I E
Sbjct: 96 SSSDDFKFLGADSVDKQKIDMITAVECAHWFDFE 129
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 39.4 bits (92), Expect = 5e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
VLD+ G G ++ A V V A D
Sbjct: 37 GNEEVLDVATGGGHVANAFAPFV---KKVVAFD 66
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 39.1 bits (92), Expect = 5e-04
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189
+ + ++ V D+G GSG ++ A +G K V A D +
Sbjct: 50 AMLGIERAMVKPLTVADVGTGSGILA-IAAHKLGAK-SVLATDISDE 94
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 38.3 bits (89), Expect = 8e-04
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 133 DQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
+ +++RP L++ L + V+D G+G + +A G V A D Q +
Sbjct: 2 NAMIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLA---GLSKKVYAFDVQEQALG 58
Query: 193 LFMTKLKISYPKLYKLYK 210
+L + +L
Sbjct: 59 KTSQRLSDLGIENTELIL 76
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 38.4 bits (90), Expect = 9e-04
Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 30/132 (22%)
Query: 125 SHSLSGRPDQVLRR-----------------PQAACLQHLSDKLLPGANVLDLGFGSGFM 167
S+ R L+ + + KL+ +++G +G+
Sbjct: 26 RTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVL-KLVNAKKTIEVGVFTGYS 84
Query: 168 SCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDA-------R 220
A + D G +TA+D + ++ + + + + ++ +E DA
Sbjct: 85 LLLTALSIPDDGKITAID-----FDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLL 139
Query: 221 KPYKKNGPYDVI 232
+ + G YD
Sbjct: 140 QGQESEGSYDFG 151
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 38.6 bits (90), Expect = 0.001
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
A L S + ++DL G+G + ++ K + V+ +L ++
Sbjct: 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADM 87
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 38.1 bits (88), Expect = 0.001
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 143 CLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
++ +D + G +V+D G G+G ++C + VTA D P I
Sbjct: 41 LIEIYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIE 88
>3ll7_A Putative methyltransferase; methytransferase, structural genomics,
MCSG, PSI-2, protein initiative; HET: MSE; 1.80A
{Porphyromonas gingivalis}
Length = 410
Score = 38.6 bits (89), Expect = 0.001
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 11/99 (11%)
Query: 138 RPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTK 197
+ + S + G V+DL G G + ++ +
Sbjct: 80 GAVTS--SYKSRFIREGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVA---- 130
Query: 198 LKISYPKLYKLYKIMDVVEWDARK--PYKKNGPYDVIHF 234
+ + P L K ++++ D ++ P K D I+
Sbjct: 131 ARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 38.3 bits (89), Expect = 0.001
Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 15/97 (15%)
Query: 137 RRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMT 196
RP L + + N DLG G G + + G +T +D ++
Sbjct: 19 TRPARDLLAQVPLE--RVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLE---- 71
Query: 197 KLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIH 233
K P + D+ W D+++
Sbjct: 72 KAADRLPNTN--FGKADLATWKP------AQKADLLY 100
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 38.2 bits (89), Expect = 0.001
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 130 GRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
D P A L + + G ++DLG G G+ +V +D
Sbjct: 24 EGLDGAAEWP--ALRAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGA--SYVLGLD 73
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 37.9 bits (88), Expect = 0.001
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP 203
L+ ++ + GA +LD+G ++ + G A + + + +
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNV----- 59
Query: 204 KLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ + L + + V + +++ VI
Sbjct: 60 EAHGLKEKIQVRLANGLAAFEETDQVSVI 88
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 37.4 bits (87), Expect = 0.001
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 3/52 (5%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLIN 192
A + L P + D+G GSG ++ R + +
Sbjct: 15 ALAISAL--APKPHETLWDIGGGSGSIAIEWLRSTPQ-TTAVCFEISEERRE 63
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 38.1 bits (89), Expect = 0.001
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 30/132 (22%)
Query: 125 SHSLSGRPDQVLRR-----------------PQAACLQHLSDKLLPGANVLDLGFGSGFM 167
S+ R + ++ + L L KL+ N +++G +G+
Sbjct: 35 ETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLL-KLINAKNTMEIGVYTGYS 93
Query: 168 SCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR------- 220
A + + G + A+D IN +L + K + +D E A
Sbjct: 94 LLATALAIPEDGKILAMD-----INKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 148
Query: 221 KPYKKNGPYDVI 232
K K +G YD I
Sbjct: 149 KDEKNHGSYDFI 160
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 37.9 bits (87), Expect = 0.002
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 2/124 (1%)
Query: 131 RPDQVLRRPQA-ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQ 189
P + R A L++L KL V D SG + A D +
Sbjct: 29 NPRMRVNRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSK 88
Query: 190 LINLFMTKLKISYPKLYKLY-KIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIPIEVSKL 248
I + K++ + M+ + ++ D+ FG+ V I +
Sbjct: 89 AIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLDPFGTPVPFIESVALSM 148
Query: 249 CRSQ 252
R
Sbjct: 149 KRGG 152
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 37.1 bits (86), Expect = 0.002
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 13/76 (17%)
Query: 122 AKASHSLSGRPDQVLRRP--------QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMAR 173
+ GRP+ +A L L G + D+G GSG +S
Sbjct: 18 GSHMSQVPGRPESAFAHDGQITKSPMRALTLAAL--APRRGELLWDIGGGSGSVSVEWCL 75
Query: 174 MVGDKGHVTAVDHIPQ 189
G ++
Sbjct: 76 AG---GRAITIEPRAD 88
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 37.2 bits (86), Expect = 0.003
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
L+LG G+G ++ ++ A+D ++ +F K+ K+
Sbjct: 39 EEPVFLELGVGTGRIA---LPLIARGYRYIALDADAAMLEVFRQKIAGVDRKV------- 88
Query: 213 DVVEWDARK-PYKKNGPYDVIHFGSGVKHIP 242
VV+ DAR P + + +P
Sbjct: 89 QVVQADARAIPL-PDESVHGVIVVHLWHLVP 118
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 37.2 bits (86), Expect = 0.003
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+ L D VLDLG G G+ A V +D
Sbjct: 37 KKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAK--KVLGID 74
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 37.1 bits (86), Expect = 0.003
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 18/100 (18%)
Query: 145 QHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPK 204
L + L VLDLG G+G S + + V VD + M L+++ K
Sbjct: 46 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVD-----PSKEM--LEVAREK 95
Query: 205 LYKLYKIMDVVEWDARK-PYKKNGPYD-VIHFGSGVKHIP 242
K +VVE A P+ +G ++ V+ G + ++
Sbjct: 96 GVK-----NVVEAKAEDLPF-PSGAFEAVLALGDVLSYVE 129
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 37.2 bits (86), Expect = 0.003
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 7/71 (9%)
Query: 121 SAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH 180
++ R R A + L+ G+ + D+G G+G S +A
Sbjct: 6 NSIGKQYSQTRVPD--IRIVNAIINLLNLP--KGSVIADIGAGTGGYSVALANQG---LF 58
Query: 181 VTAVDHIPQLI 191
V AV+ +
Sbjct: 59 VYAVEPSIVMR 69
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 36.9 bits (85), Expect = 0.003
Identities = 19/106 (17%), Positives = 26/106 (24%), Gaps = 11/106 (10%)
Query: 138 RPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMT 196
R + + LP L G G G MA V +D +
Sbjct: 51 RATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMAS----PERFVVGLDISESALAKANE 106
Query: 197 KLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
S Y + DV W +D+I I
Sbjct: 107 TYGSSPKAEYFSFVKEDVFTWRP------TELFDLIFDYVFFCAIE 146
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 36.7 bits (85), Expect = 0.003
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 16/91 (17%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISYPKLYKLYKI 211
+LD+G G+G + +A GH + ++ +L+ L +P + +
Sbjct: 41 VDGVILDVGSGTGRWTGHLA----SLGHQIEGLEPATRLVELARQT----HPSV--TFHH 90
Query: 212 MDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ + + + + H+
Sbjct: 91 GTITDLSDS-----PKRWAGLLAWYSLIHMG 116
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 36.5 bits (84), Expect = 0.005
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
VL+ G GSG + ++ + G+ AV+ + + K + + +
Sbjct: 91 KEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGK---NVKFFNV 147
Query: 213 DVVEWDARKPYKKNGPYDVIHFGSGVKHIPIEVSKLCR 250
D + + + DV ++ + + +
Sbjct: 148 DFKDAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAP 185
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 36.0 bits (83), Expect = 0.005
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
NVL+ G G+G ++ + V ++
Sbjct: 45 SFGNVLEFGVGTGNLTNKLLLAG---RTVYGIE 74
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 36.1 bits (83), Expect = 0.006
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISYPKLYKL 208
+ VLD+ G+G S + +G VT+VD +++ + + +
Sbjct: 54 RQHGCHRVLDVACGTGVDSIMLVE----EGFSVTSVDASDKMLKYALKERWNRRKEPAFD 109
Query: 209 YKIMDVVEW-DARKPYKKNGPYDVI 232
+++ W K +D +
Sbjct: 110 KWVIEEANWLTLDKDVPAGDGFDAV 134
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 35.6 bits (82), Expect = 0.007
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 22/103 (21%)
Query: 137 RRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFM 195
P + +P +L L G G +C +A G+ VTAVD +
Sbjct: 15 TEPNDFLVSVA--NQIPQGKILCLAEGEGRNACFLAS----LGYEVTAVDQSSVGLA--- 65
Query: 196 TKLKISYPKLYKLYKIMDV----VEWDARKPYKKNGPYDVIHF 234
K +L + V V+ + ++ I
Sbjct: 66 --------KAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVS 100
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 36.0 bits (83), Expect = 0.007
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+QHL + ++DLG G+G + + V VD
Sbjct: 215 MQHLPEN--LEGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVD 253
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 35.5 bits (82), Expect = 0.008
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 135 VLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLIN 192
L R + L+ + K++ LDLG G+G S +A G+ V A D I
Sbjct: 16 ELTRTHSEVLEAV--KVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIA 68
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 35.5 bits (82), Expect = 0.009
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 147 LSDKLLP-GANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINL 193
L D + P GA +LD G G G + +++ +GH V D P LI+
Sbjct: 39 LIDAMAPRGAKILDAGCGQGRIGGYLSK----QGHDVLGTDLDPILIDY 83
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 35.3 bits (82), Expect = 0.009
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
L V+D+G GSG M+ +A+ V A+D++ I +
Sbjct: 33 LNKDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEV 72
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 35.4 bits (81), Expect = 0.010
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 141 AACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKL 198
A + + PG +VL LG SG + ++ +VG +G + ++ P+++ + +
Sbjct: 59 GAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118
Query: 199 K 199
+
Sbjct: 119 E 119
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 35.6 bits (82), Expect = 0.010
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISYPKLYKLYKI 211
VLDL G+G + +A +G+ V +D +++ + K K K+
Sbjct: 41 EVRRVLDLACGTGIPTLELAE----RGYEVVGLDLHEEMLRVARRKAKERNLKI------ 90
Query: 212 MDVVEWDARKPYKKNGPYDVI 232
+ ++ D + +D +
Sbjct: 91 -EFLQGDVLE-IAFKNEFDAV 109
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 35.5 bits (82), Expect = 0.011
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 136 LRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
+ + + + + VLD+G G G + G H +D ++N+
Sbjct: 36 ISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNM 93
Query: 194 FMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ + D +D+I
Sbjct: 94 AN--------ERVSGNNKIIFEANDILTKEFPENNFDLI 124
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 35.3 bits (81), Expect = 0.013
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISYPKLYKLYKI 211
VL+L G G ++ G VTA++ ++ F +L +
Sbjct: 82 VSGPVLELAAGMGRLTFPFLD----LGWEVTALELSTSVLAAFRKRLA---EAPADVRDR 134
Query: 212 MDVVEWDARKPYKKNGPYDVI 232
+V+ D + + + +
Sbjct: 135 CTLVQGDMSA-FALDKRFGTV 154
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 35.4 bits (82), Expect = 0.014
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L L+ VLD+G G+G +S AR K +T D
Sbjct: 189 LSTLTPH--TKGKVLDVGCGAGVLSVAFARH-SPKIRLTLCD 227
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 34.9 bits (80), Expect = 0.014
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP 203
LQ +++ + GA +LD+G ++ + +M G A + + + +
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNV----- 65
Query: 204 KLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ L +DV + +++ D I
Sbjct: 66 SEHGLTSKIDVRLANGLSAFEEADNIDTI 94
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 34.7 bits (80), Expect = 0.017
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 138 RPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMT 196
P + + +++ PG + D+G G+G + +A + VT VD +++ +
Sbjct: 18 VPYPEWVAWVLEQVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVDLSEEMLEIAQE 72
Query: 197 KLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
K + + D D R+ + P D I
Sbjct: 73 KAMETNRHV-------DFWVQDMRE-LELPEPVDAI 100
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 34.9 bits (81), Expect = 0.017
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 30/93 (32%)
Query: 153 PGANVLDLGFGSGFMSCC--------MARMVGDKGHVTAVDHIPQ---LINLFMTKLKIS 201
PG V+DL +A ++ +KG + A D + F+ ++ I
Sbjct: 259 PGETVVDL--------AAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK 310
Query: 202 YPKLYKLYKIMDVVEWDARKPYKK--NGPYDVI 232
I+ + DARK + D +
Sbjct: 311 ---------IVKPLVKDARKAPEIIGEEVADKV 334
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 34.8 bits (80), Expect = 0.018
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKL---Y 209
+LD+G GSG +S +A VT +D IN ++++
Sbjct: 30 EDDEILDIGCGSGKISLELASKG---YSVTGID-----INSEA--IRLAETAARSPGLNQ 79
Query: 210 KIMDVVEW---DARKPYKKNGPYDVIHFGSGVKHIP 242
K E+ +A + +D + + +P
Sbjct: 80 KTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSVP 115
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 34.4 bits (79), Expect = 0.019
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVD 185
A L + VLDLG G G++ R + D+G VD
Sbjct: 42 QAILLAILG--RQPERVLDLGCGEGWLL----RALADRGIEAVGVD 81
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 34.4 bits (79), Expect = 0.019
Identities = 15/97 (15%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 146 HLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKL 205
LS +N L++G +G + +A +T +D +P+ I + K + +
Sbjct: 44 RLSLSSGAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTK-RWSHI 99
Query: 206 YKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ D++++ +D+I + ++
Sbjct: 100 --SWAATDILQFSTA------ELFDLIVVAEVLYYLE 128
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 34.5 bits (79), Expect = 0.020
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK 210
L + D+G GS +S + ++ G + A++ PQ + ++ + K +
Sbjct: 38 LQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGF----IRDNLKKFV--AR 90
Query: 211 IMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ +VE A + D + G +
Sbjct: 91 NVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLE 122
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 34.3 bits (78), Expect = 0.025
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP----QLINLFMTKLKI 200
PGA VL LG SG ++ +VG G V AV+ LINL + I
Sbjct: 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNI 128
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 34.2 bits (79), Expect = 0.026
Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 18/137 (13%)
Query: 104 YLISHLREVGMGPSSALSA--KASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLG 161
YL+ L+ + + QA L L KL+ V+D+G
Sbjct: 18 YLLQVSLR----EPPLLAELREETTRSFSTYAMQTAPEQAQLLALLV-KLMQAKKVIDIG 72
Query: 162 FGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR- 220
+G+ + M + G + D ++ T L Y + L + + A+
Sbjct: 73 TFTGYSAIAMGLALPKDGTLITCD-----VDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127
Query: 221 -----KPYKKNGPYDVI 232
+ YD+I
Sbjct: 128 TLAELIHAGQAWQYDLI 144
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 33.8 bits (78), Expect = 0.030
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
++++ ++LDLG G G + +A V T D
Sbjct: 45 VENVVVD--KDDDILDLGCGYGVIGIALADEV---KSTTMAD 81
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 33.6 bits (77), Expect = 0.041
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVG 176
LLP +++G G+G + + +G
Sbjct: 44 CLLPEGRGVEIGVGTGRFAVPLKIKIG 70
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 33.4 bits (77), Expect = 0.041
Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 12/99 (12%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
QA +Q L +L VL+LG +G+ + M+ + D G V D IN TK
Sbjct: 48 QAQFMQMLI-RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCD-----INEGWTKHA 101
Query: 200 ISYPKLYKLYKIMDVVEWDAR------KPYKKNGPYDVI 232
Y + K + + A +D I
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 33.8 bits (77), Expect = 0.045
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 144 LQHLSDKLLP----GANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L+ L ++L P G VLDLG G G ++ +ARM V V+
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG---AEVVGVE 262
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 33.2 bits (76), Expect = 0.050
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISY 202
++ + L + LDL G+G ++ + K AVD ++++ K +
Sbjct: 28 IEKCVENNLVFDDYLDLACGTGNLTENLCP----KFKNTWAVDLSQEMLSEAENKFRSQG 83
Query: 203 PKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
K + D N +D+I
Sbjct: 84 LKP-------RLACQDISN-LNINRKFDLI 105
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 32.8 bits (75), Expect = 0.054
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+ L + L VLDLG +G ++ + + + V + D
Sbjct: 14 MDALEREGLEMKIVLDLGTSTGVITEQLRK----RNTVVSTD 51
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 33.6 bits (77), Expect = 0.055
Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 136 LRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFM 195
L A L L+D PG VLD GSG ++ A +G V A D + + L
Sbjct: 187 LTPVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAR 245
Query: 196 TKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
S + + DAR + D I
Sbjct: 246 EAALASG------LSWIRFLRADARHLPRFFPEVDRI 276
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 33.1 bits (76), Expect = 0.062
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
QA L +L+ +L+ LDLG +G+ + +A + G V + ++ +L
Sbjct: 57 QAQLLANLA-RLIQAKKALDLGTFTGYSALALALALPADGRVVTCE-----VDAQPPELG 110
Query: 200 ISYPKLYKLYKIMDVVEWDAR------KPYKKNGPYDVI 232
+ + +D+ A + G +DV
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 32.9 bits (75), Expect = 0.063
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP 203
L+ ++ + + D+G ++ C + A + + ++
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQV----- 65
Query: 204 KLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ L + +DV + + +K D I
Sbjct: 66 RSSGLTEQIDVRKGNGLAVIEKKDAIDTI 94
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 33.0 bits (76), Expect = 0.069
Identities = 16/96 (16%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
L HL K+ A +L++G G+ + MA+ + + + +++ + +
Sbjct: 42 GMESLLHLL-KMAAPARILEIGTAIGYSAIRMAQALPE-ATIVSIE-----RDERRYEEA 94
Query: 200 ISYPKLYKLYKIMDVVEWDAR---KPYKKNGPYDVI 232
+ K L ++++ DA + + +DV+
Sbjct: 95 HKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL 130
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 32.5 bits (74), Expect = 0.079
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 21/110 (19%)
Query: 134 QVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
+ + L+ L L PG ++L++G G+G+ R+ V+ +
Sbjct: 20 AYVIAEEERALKGL---LPPGESLLEVGAGTGYWL---RRLPY--PQKVGVE-----PSE 66
Query: 194 FMTKLKISYPKLYKLYKIMDVVEWDARK-PYKKNGPYDVIHFGSGVKHIP 242
M L + + + V P+ +DV+ + ++ +
Sbjct: 67 AM--LAVGRRRAPEA----TWVRAWGEALPF-PGESFDVVLLFTTLEFVE 109
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 32.8 bits (74), Expect = 0.080
Identities = 13/98 (13%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKG-----HVTAVDHIPQLINLFMTKLK--ISYPKL 205
+L +G G+G + + V + + V+ + I + + + +
Sbjct: 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENV 111
Query: 206 YKLYKIMDVVEWDARKP-YKKNGPYDVIHFGSGVKHIP 242
+ E+ +R K+ +D IH + ++
Sbjct: 112 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK 149
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 32.8 bits (75), Expect = 0.081
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 131 RPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKG-HVTAVDHIPQ 189
+ L+H+ VLD+G SG + + G V+ ++ P+
Sbjct: 13 KSGHYYNAVNPNLLKHIK---KEWKEVLDIGCSSGALGAAIKE----NGTRVSGIEAFPE 65
Query: 190 LINLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ K + ++ ++ + +D + FG ++H+
Sbjct: 66 AAE----QAKEKLDHVV--LGDIETMDMPY-----EEEQFDCVIFGDVLEHLF 107
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 32.6 bits (74), Expect = 0.091
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 13/84 (15%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLKISYPKLYKL 208
K++ VLDLG G G S ++ G+ VT+ DH I + +
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSL----LGYDVTSWDHNENSIAFLNETKEKENLNIS-- 170
Query: 209 YKIMDVVEWDARKPYKKNGPYDVI 232
+ D+ + YD I
Sbjct: 171 TALYDINAANI------QENYDFI 188
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 32.6 bits (75), Expect = 0.095
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
Q L L +L +L++G G+ + MAR + G + ++ + ++
Sbjct: 51 QGQFLALLV-RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLE-----ADAHHAQVA 104
Query: 200 ISYPKLYKLYKIMDVVEWDAR---KPYKKNGPYDVI 232
+L + + + + E A + + +D+I
Sbjct: 105 RENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 32.2 bits (74), Expect = 0.099
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
Q LQ L ++ N+L++G G+ + +AR + G V ++ + +
Sbjct: 46 QGKFLQLLV-QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLE-----ASEKHADIA 99
Query: 200 ISYPKLYKLYKIMDVVEWDARK-----PYKKNGPYDVI 232
S + L ++V A +K P+D I
Sbjct: 100 RSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 32.3 bits (73), Expect = 0.11
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 15/104 (14%)
Query: 134 QVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINL 193
V A + + V+D G G + A V A+D P I L
Sbjct: 59 SVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIAL 115
Query: 194 FMTKLKISYPKLYKLYKIMDVVEW---DARKPYKKNGPYDVIHF 234
++ Y I D +E+ D DV+
Sbjct: 116 ARNNAEV--------YGIADKIEFICGDFLL-LASFLKADVVFL 150
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 32.2 bits (74), Expect = 0.11
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 17/88 (19%)
Query: 152 LPGANVLDLGF-GSGFMSC-CMARMVGDKGHVTAVDHIPQLI-----NLFMTKLKISYPK 204
+ + LD F GSG + ++R K VT ++ + NL K +
Sbjct: 52 IHQSECLDG-FAGSGSLGFEALSR--QAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAE 107
Query: 205 LYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ +++ + + +DV+
Sbjct: 108 VIN----QSSLDFLKQP--QNQPHFDVV 129
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 32.4 bits (73), Expect = 0.12
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 16/82 (19%)
Query: 151 LLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYK 210
L G +DLG G + + + V +VD+ P M L +
Sbjct: 209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP------MA------QSLMDTGQ 253
Query: 211 IMDVVEWDARKPYKKNGPYDVI 232
+ + D K +
Sbjct: 254 V-TWLREDGFKFRPTRSNISWM 274
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.13
Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 94/263 (35%)
Query: 33 WVDR-DRFAKDGY---I-----DSP-----HNFGTNSIVERPSYVSSCSIWYLVICLGKG 78
W +R D KD Y I ++P H G R +Y + + I GK
Sbjct: 1646 W-NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI---FETIVDGKL 1701
Query: 79 -SKSIFQTYG------IVSGNKGIHFLPFYQF-----YLIS-----HLREVGMGPS---- 117
++ IF+ KG+ QF L+ L+ G+ P+
Sbjct: 1702 KTEKIFKEINEHSTSYTFRSEKGLLSAT--QFTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Query: 118 --------SALSAKASHSLS-----------GR-------PDQVLRRPQAACLQHLSDKL 151
+AL++ A +S G D++ R +
Sbjct: 1760 AGHSLGEYAALASLAD-VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI------AI 1812
Query: 152 LPGANVLDLGFGSGFMSCC--MARMVGDK----------------GHVTAVDHIPQLINL 193
PG + + G G + A+D + ++N
Sbjct: 1813 NPGRVAASFS-QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 194 FMTKLKISYPKLYKLYKIMDVVE 216
+ KI +L K + +V
Sbjct: 1872 IKLQ-KIDIIELQKSLSLEEVEG 1893
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 32.0 bits (72), Expect = 0.14
Identities = 9/93 (9%), Positives = 26/93 (27%), Gaps = 10/93 (10%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY 209
+ LD G G G ++ + + ++ + ++ + K +
Sbjct: 90 PGHGTSRALDCGAGIGRITKNLLTKLYA--TTDLLEPVKHMLE----EAK----RELAGM 139
Query: 210 KIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ + YD+I ++
Sbjct: 140 PVGKFILASMETATLPPNTYDLIVIQWTAIYLT 172
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 31.8 bits (72), Expect = 0.16
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYP 203
L+ VLD+G G G + + VD +I K +
Sbjct: 32 LRRYIPYFKGCRRVLDIGCGRGEF---LELCKEEGIESIGVDINEDMIKFCEGKFNV--- 85
Query: 204 KLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
D +E+ P + D + V+H+
Sbjct: 86 ------VKSDAIEYLKSLP---DKYLDGVMISHFVEHLD 115
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 31.9 bits (73), Expect = 0.16
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 19/137 (13%)
Query: 104 YLISHLREVGMGPSSALSA--KASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLG 161
YL S + S L+ + + L G P Q+ QA L L L VL++G
Sbjct: 27 YLQSISAD----DSFYLAQLRRETAHLPGAPMQI-SPEQAQFLGLLI-SLTGAKQVLEIG 80
Query: 162 FGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIMDVVEWDAR- 220
G+ + MA + G + A D + T + Y + + + + + A
Sbjct: 81 VFRGYSALAMALQLPPDGQIIACD-----QDPNATAIAKKYWQKAGVAEKISLRLGPALA 135
Query: 221 -----KPYKKNGPYDVI 232
K +D+I
Sbjct: 136 TLEQLTQGKPLPEFDLI 152
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 31.6 bits (72), Expect = 0.18
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 154 GANVLDLG-FGSG--FMSCCMARMVGDKGHVTAVDHIPQLIN-LFMTKLKISYPKLYKLY 209
+ G FG G ++ +A + + + + ++P+L L + + +
Sbjct: 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI 113
Query: 210 KIMDV 214
K + V
Sbjct: 114 KKVPV 118
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 31.2 bits (70), Expect = 0.24
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLK 199
+ +L LG +G +A + DKG V A+++ P+++ +
Sbjct: 74 RDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYAPRIMRELLDACA 119
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 31.1 bits (71), Expect = 0.27
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+ L L+ K+ ++++G +G+ S C A + + G + D
Sbjct: 48 EGQFLNILT-KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCD 92
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 31.4 bits (71), Expect = 0.27
Identities = 15/88 (17%), Positives = 21/88 (23%), Gaps = 21/88 (23%)
Query: 100 FYQFYLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLL---PGAN 156
+ H L ++A + L D L P
Sbjct: 77 DRAALG-----DPEHSEYEKKVIAELHRL-----------ESAQAEFLMDHLGQAGPDDT 120
Query: 157 VLDLGFGSGFMSCCMARMVGDKGHVTAV 184
++D G G G R G V V
Sbjct: 121 LVDAGCGRGGSMVMAHRRFG--SRVEGV 146
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 31.0 bits (71), Expect = 0.27
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 131 RPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVG 176
RPD L Q A + DKL PG +LD+G G G
Sbjct: 48 RPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD 95
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 31.4 bits (72), Expect = 0.29
Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 36/95 (37%)
Query: 153 PGANVLDLGFGSGFMSCC--------MARMVGDKGHVTAVDHIPQ---LI--NLFMTKLK 199
G ++LDL C + + + V AVD Q + NL +K
Sbjct: 246 NGEHILDL--------CAAPGGKTTHILEV-APEAQVVAVDIDEQRLSRVYDNLKRLGMK 296
Query: 200 ISYPKLYKLYKIMDVVEWDARKPYKK--NGPYDVI 232
V + D R P + +D I
Sbjct: 297 A------------TVKQGDGRYPSQWCGEQQFDRI 319
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 30.8 bits (70), Expect = 0.29
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 156 NVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+ + +G + + + D +T +D
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTLTCID 88
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 30.9 bits (70), Expect = 0.32
Identities = 5/57 (8%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 144 LQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTKLK 199
+ + +++LD+ G+G + + ++ ++ +L
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFTK----EFGDTAGLELSEDMLTHARKRLP 83
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 30.8 bits (69), Expect = 0.33
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 8/112 (7%)
Query: 131 RPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQL 190
D R + LD G G G ++ + + V VD
Sbjct: 57 SIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR--EVDMVDITEDF 114
Query: 191 INLFMTKLKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ T L ++ + + ++ + YDVI + H+
Sbjct: 115 LVQAKTYLGEEGKRVRNYF-CCGLQDFTP-----EPDSYDVIWIQWVIGHLT 160
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 30.6 bits (69), Expect = 0.35
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 14/93 (15%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLY 209
N+L+LG G + + D +T V+ + I+ +LK ++ +
Sbjct: 39 PFFRPGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLKDGITYIHSRF 95
Query: 210 KIMDVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
+ + YD I ++HI
Sbjct: 96 -----------EDAQLPRRYDNIVLTHVLEHID 117
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 30.6 bits (69), Expect = 0.36
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 18/95 (18%)
Query: 140 QAACLQHLSDKLLP-GANVLDLGFGSGFMSCCMARMVGDKGH-VTAVDHIPQLINLFMTK 197
+AA L L + P A++LD+ G+G +A V ++ ++ + +
Sbjct: 36 EAADLAALVRRHSPKAASLLDVACGTGMHLRHLAD----SFGTVEGLELSADMLAIARRR 91
Query: 198 LKISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ D R + + +
Sbjct: 92 N-----------PDAVLHHGDMRD-FSLGRRFSAV 114
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase,
nitrosylation, transfera inhibitor complex; HET: BTB;
1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A
1ysl_B* 1ysl_A* 2hdb_A*
Length = 388
Score = 31.1 bits (70), Expect = 0.38
Identities = 13/91 (14%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 141 AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD--KGHVTAVDHIPQLINLFMTKL 198
+ L++ + L G + +GSG ++ + + H+ H+ L N +
Sbjct: 291 ISLLEN-ATTLTAGNQIGLFSYGSGAVAEFFTGELVAGYQNHLQKETHLALLDN----RT 345
Query: 199 KISYPKLYKLYKIMDVVEWDARKPYKKNGPY 229
++S + ++ + ++ D + + Y
Sbjct: 346 ELSIAEYEAMFA--ETLDTDIDQTLEDELKY 374
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 30.6 bits (70), Expect = 0.39
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 131 RPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVG 176
R D L+ Q A + KL PG +LD+G G G
Sbjct: 40 RDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD 87
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent
methyltransferase fold, trans; HET: SAM; 2.00A
{Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB:
2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Length = 318
Score = 30.3 bits (69), Expect = 0.54
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 131 RPDQVLRRPQAACLQHLSDKLL--PGANVLDLGFGSGFMSCCMARMVG 176
P+ L Q A + DKL PG +LD+G G G
Sbjct: 66 PPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD 113
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 30.2 bits (67), Expect = 0.63
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
A Q+ G VLD+G GSG ++ A+ V AV+
Sbjct: 52 FNAVFQNKHH--FEGKTVLDVGTGSGILAIWSAQ--AGARKVYAVEATK 96
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 29.7 bits (66), Expect = 0.71
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 18/108 (16%)
Query: 127 SLSGRPDQVLRRPQ---------AACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGD 177
L G + + Q S + G V DLG G+G +S +
Sbjct: 14 KLKGFKNPKVWLEQYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL--G 71
Query: 178 KGHVTAVDHIPQLINL-------FMTKLKISYPKLYKLYKIMDVVEWD 218
V V+ + +++ F K K+ + + +D+V +
Sbjct: 72 AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMN 119
>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB:
2f9a_A* 2fa0_A* 2fa3_A*
Length = 450
Score = 29.8 bits (66), Expect = 0.84
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 5/99 (5%)
Query: 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFM---TKL 198
A L H L G V+ +GSG + + + + ++ +I ++++ +
Sbjct: 336 ASLVHNKHSDLAGKRVVMFSYGSGSTATMFSLRLCENQSPFSLSNIASVMDVGGKLKARH 395
Query: 199 KISYPKLYKLYKIMDVVEWDARKPYKKNGPYDVIHFGSG 237
+ + K + K+M+ K + + + G
Sbjct: 396 EYAPEKFVETMKLME--HRYGAKEFVTSKEGILDLLAPG 432
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 29.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
Q A LQ+ +D VLD+G GSG +S A+ + AV+
Sbjct: 147 QRAILQNHTD--FKDKIVLDVGCGSGILSFFAAQ--AGARKIYAVEAST 191
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase,
kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP:
d.144.1.6
Length = 264
Score = 28.8 bits (64), Expect = 1.4
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 109 LREVGMGPSSALSAKASHSLSGRPDQVLRRP----------QAACLQHLSDKLLPGANVL 158
+ +G S A + S GRP ++ +AA L L+ +P A VL
Sbjct: 24 WAQQTIGCSDAAVFRLS--AQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVL 81
Query: 159 DLGFGSGFMSCCMARMVGD 177
D+ +G + + G
Sbjct: 82 DVVTEAGRDWLLLGEVPGQ 100
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 28.8 bits (64), Expect = 1.5
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
Q A LQ+ +D VLD+G GSG +S A+ G + + AV+
Sbjct: 39 QRAILQNHTD--FKDKIVLDVGCGSGILSFFAAQA-GAR-KIYAVEAST 83
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 28.3 bits (64), Expect = 1.7
Identities = 18/88 (20%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 152 LPGANVLDLGF-GSGFMSC-CMARMVGDKGHVTAVDHIPQLI-----NLFMTKLKISYPK 204
G LDL + GSG ++ ++R G ++ + N+ +TK P+
Sbjct: 43 FDGGMALDL-YSGSGGLAIEAVSR--GMD-KSICIEKNFAALKVIKENIAITKE----PE 94
Query: 205 LYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+++ K MD + Y++ +D++
Sbjct: 95 KFEVRK-MDANRA-LEQFYEEKLQFDLV 120
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.8 bits (64), Expect = 1.8
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 16/81 (19%)
Query: 152 LPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKI 211
G VL+ G G V+ I+ PK L
Sbjct: 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVE-----ID----------PKALDLPPW 82
Query: 212 MDVVEWDARKPYKKNGPYDVI 232
+ + D ++ +D+I
Sbjct: 83 AEGILADFLL-WEPGEAFDLI 102
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 28.6 bits (64), Expect = 1.9
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 146 HLSDKLLPGANVLDLGFG-SGFMSCCMARM-VGDKGHVTAVDH-IPQLINLFMTKLK-IS 201
+D + G+ V LG G +G +AR +V L + L
Sbjct: 149 QHTDYTIHGSQVAVLGLGRTGMT---IARTFAALGANVKVGARSSAHLARITEMGLVPFH 205
Query: 202 YPKLYKLYKIMDVV 215
+L + K +D+
Sbjct: 206 TDELKEHVKDIDIC 219
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 27.9 bits (63), Expect = 2.2
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 24/90 (26%)
Query: 152 LPGANVLDLGFGSGFMSC-CMARMVGDKG--HVTAVDHIPQLI-----NLFMTKLKISYP 203
G VLDL GSG ++ ++R G V+ + N+ MTK + +
Sbjct: 30 FNGGRVLDLFAGSGGLAIEAVSR-----GMSAAVLVEKNRKAQAIIQDNIIMTKAENRF- 83
Query: 204 KLYKLYKIMDVVEWDARKPYKK-NGPYDVI 232
+++ +A + G +D++
Sbjct: 84 ---------TLLKMEAERAIDCLTGRFDLV 104
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Escherichia coli} SCOP: c.66.1.20
Length = 207
Score = 28.0 bits (63), Expect = 2.6
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 14/50 (28%)
Query: 124 ASHSLSGR--PDQVLRRPQAACLQHLSD-----KLLPGANVLDLGFGSGF 166
+++L+ P+++L R H+ D L G +D+G G G
Sbjct: 36 KAYNLTSVRDPNEMLVR-------HILDSIVVAPYLQGERFIDVGTGPGL 78
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 28.1 bits (62), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
L VLD+G G+G +S A+ G K HV VD
Sbjct: 35 DLFKDKIVLDVGCGTGILSMFAAKH-GAK-HVIGVDMSS 71
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 28.2 bits (62), Expect = 3.0
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 6/90 (6%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLYKLYKIM 212
G +VLDLG G G R G VD IN + + + ++
Sbjct: 64 RGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 213 DVVEWDARKPYKKNGPYDVIHFGSGVKHIP 242
D +DVI +
Sbjct: 122 DSYGR----HMDLGKEFDVISSQFSFHYAF 147
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 27.9 bits (63), Expect = 3.2
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L+ + V D+G GSG + +A+ V A D
Sbjct: 114 LALELIRKY--GIKTVADIGTGSGAIGVSVAKF--SDAIVFATD 153
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 27.7 bits (62), Expect = 3.7
Identities = 13/82 (15%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 104 YLISHLREVGMGPSSALSAKASHSLSGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFG 163
Y+ + + P S L A ++ + + + + + + VL+LG
Sbjct: 12 YVQQNAKP--GDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVI-REYSPSLVLELGAY 68
Query: 164 SGFMSCCMARMVGDKGHVTAVD 185
G+ + MAR++ + ++
Sbjct: 69 CGYSAVRMARLLQPGARLLTME 90
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 27.5 bits (62), Expect = 3.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 153 PGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
G L++G G M MA + VTA +
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFN-CKVTATE 86
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 27.7 bits (61), Expect = 3.8
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 140 QAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
+ Q+ VLD+G G+G +S A+ G K V VD
Sbjct: 53 RDFIYQNPHI--FKDKVVLDVGCGTGILSMFAAKA-GAK-KVLGVDQSE 97
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 27.5 bits (60), Expect = 4.2
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 157 VLDLGFGSGFMSCCMARMVGDKGHVTAVDHIPQLI 191
+DLG G G +A + +D + + +
Sbjct: 28 HIDLGTGDGRNIYKLAINDQN-TFYIGIDPVKENL 61
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 27.6 bits (61), Expect = 4.4
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 129 SGRPDQVLRRPQAACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
+G + A + L D VLD+G G G+ + A + +D
Sbjct: 64 AGHYQPLRDAIVAQLRERLDD---KATAVLDIGCGEGYYTHAFAD-ALPEITTFGLD 116
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 27.7 bits (61), Expect = 4.4
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 150 KLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVDHIP 188
L VLD+G G+G + A+ G + V ++
Sbjct: 63 HLFKDKVVLDVGSGTGILCMFAAKA-GAR-KVIGIECSS 99
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 27.2 bits (60), Expect = 5.4
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 19/89 (21%)
Query: 149 DKLLPGANVLDLGFGSG---FMSCCMARMVGDKGHVTAVD--HIPQLINLFMTKLKISYP 203
L VLDLG G G + + ++ KG+ ++ P +
Sbjct: 77 GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGW------- 129
Query: 204 KLYKLYKIMDVVEWDARKPYKKNGPYDVI 232
+ K +V P D +
Sbjct: 130 NIVKFKDKSNVF-------TMPTEPSDTL 151
>1cza_N Hexokinase type I; structurally homologous domains, transferase;
HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3
c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A*
1hkc_A* 1bg3_A* 2nzt_A*
Length = 917
Score = 27.4 bits (60), Expect = 6.2
Identities = 12/91 (13%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 56 IVERPSYVSSCSIWYLVICLGKGSKSIFQTYGIVSGNKGIHFLPFYQFYLISHLREVGMG 115
+ R + + + ++ ++ L + + P Y LR +
Sbjct: 378 VSFRSANLVAATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQYSRRFHKTLRR--LV 435
Query: 116 PSSALSAKASHSLSGRPDQVLRRPQAACLQH 146
P S + S S SG+ ++ +
Sbjct: 436 PDSDVRFLLSESGSGKGAAMVTAVAYRLAEQ 466
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 26.7 bits (60), Expect = 6.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
++ L G V+D+G GSG ++ +A VTAVD
Sbjct: 20 EAIRFLKRMP-SGTRVIDVGTGSGCIAVSIALACPG-VSVTAVD 61
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 26.7 bits (60), Expect = 6.9
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 142 ACLQHLSDKLLPGANVLDLGFGSGFMSCCMARMVGDKGHVTAVD 185
L L ++ +LDLG G+G ++ +A D + AVD
Sbjct: 101 QALARLPEQ---PCRILDLGTGTGAIALALASERPD-CEIIAVD 140
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein,
unknown function, metal binding protein, transport
protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A
2onk_E 2onr_A
Length = 295
Score = 27.0 bits (59), Expect = 7.0
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 37 DRFAKDGYIDSPHNFGTNSIV 57
+ + + F N IV
Sbjct: 68 QKMMYPEFANWTIMFAKNQIV 88
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA
synthase, transferase; HET: COA; 1.20A {Streptococcus
mutans} PDB: 3leh_A
Length = 425
Score = 26.6 bits (58), Expect = 8.9
Identities = 11/82 (13%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 148 SDKLLPGANVLDLGFGSGFMSCCMA-RMVGDKGHVTAVDHIPQLINLFMTKLKISYPKLY 206
S L+ G + +GSG ++ +V + + +L + +S
Sbjct: 327 SQNLVAGDKIALFSYGSGAVAEIFTGTLVKGFKEQLQTNRLDKLKR----RTPLSVENYE 382
Query: 207 KLYKIMDVVEWDARKPYKKNGP 228
K++ ++ +K+
Sbjct: 383 KIFFEEAQLDDKGNASFKEYQT 404
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,939,720
Number of extensions: 229790
Number of successful extensions: 649
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 174
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.8 bits)