BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4251
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNH 142
+ Q ELDL L SV++FA+ ++L+ NAG+ + ++ T DGFE+ NH
Sbjct: 61 AGQVEVRELDLQDLSSVRRFADGVSGA----DVLINNAGIMAVPYALTVDGFESQIGTNH 116
Query: 143 LAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS-KSVLSVENYSDFWAMT 201
L HF LT N L+ +L RVV VSS +H I + ++ +S YS +
Sbjct: 117 LGHFALT----NLLLP--RLTDRVVTVSSMAHWPGRINLEDLNWRS----RRYSPWL--- 163
Query: 202 AYNDTKLCNVLFGEKL 217
AY+ +KL N+LF +L
Sbjct: 164 AYSQSKLANLLFTSEL 179
>pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|B Chain B, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|C Chain C, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
pdb|3RKU|D Chain D, Substrate Fingerprint And The Structure Of Nadp+ Dependent
Serine Dehydrogenase From Saccharomyces Cerevisiae
Complexed With Nadp+
Length = 287
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 77 ILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG-VFG---LGFSHTED 132
I E P+A+ +LD+ + + +K F E ++F+ ++ILV NAG G +G TED
Sbjct: 80 IDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATED 139
Query: 133 GFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVE 192
+ F N A +T + I AK +V + S + R +Y T S +V
Sbjct: 140 -IQDVFDTNVTALINITQAV--LPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVG 196
Query: 193 NYSDFWAMTAYNDTKLCNVLFGEKL 217
++D N TK+ +L L
Sbjct: 197 AFTDSLRKELIN-TKIRVILIAPGL 220
>pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|B Chain B, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|C Chain C, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|D Chain D, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|E Chain E, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|F Chain F, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|G Chain G, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
pdb|3I3O|H Chain H, 2.06 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad-acetone
Length = 291
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 68 DKANDA-ISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG----V 122
D+ DA +K EK +C+ + DL + K +E ++ SLNILV N
Sbjct: 80 DEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQ 139
Query: 123 FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR 175
GL + E E TF++N ++F++T + L +G + +V+ E +
Sbjct: 140 QGLEYITAEQ-LEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE 191
>pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
pdb|3IJR|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor' In Complex With Nad+
Length = 291
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 6/113 (5%)
Query: 68 DKANDA-ISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG----V 122
D+ DA +K EK +C+ + DL + K +E ++ SLNILV N
Sbjct: 80 DEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQ 139
Query: 123 FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR 175
GL + E E TF++N ++F++T + L +G + +V+ E +
Sbjct: 140 QGLEYITAEQ-LEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNE 191
>pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R.
Sphaeroides
pdb|1K2W|B Chain B, Crystal Structure Of Sorbitol Dehydrogenase From R.
Sphaeroides
Length = 256
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSH 129
+A E A C A+ LD+ S+ + E ++ S++ILV NA +F L
Sbjct: 40 EAARATAAEIGPAAC-AIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEI 98
Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHR 175
T + ++ F +N ++ + A+I G + +++ ++S++ R
Sbjct: 99 TRESYDRLFAINVSGTLFMMQAVARAMIAGGR-GGKIINMASQAGR 143
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 92 DLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 149
+L KS+K+ AE +++ ++ILV NAG+ GL + ++ VN A LT
Sbjct: 81 NLSDRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLT 140
Query: 150 LQLENALIKGAKLFARVVVVSS 171
+L +++++ + + R++ ++S
Sbjct: 141 RELIHSMMR--RRYGRIINITS 160
>pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
pdb|1VL8|B Chain B, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441)
From Thermotoga Maritima At 2.07 A Resolution
Length = 267
Score = 34.3 bits (77), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 87/220 (39%), Gaps = 47/220 (21%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
++A++A K LTEK + +A D+ + VKK E ++KF L+ +V AG+
Sbjct: 56 EEASEAAQK-LTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI---NR 111
Query: 128 SHTE-----DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD 182
H D F +VN +Y+ + + L ES S I
Sbjct: 112 RHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLL--------------RESDNPSIINIG 157
Query: 183 TISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKK 242
+++ +++ N S AY +K + LA W +Y I ++ ++
Sbjct: 158 SLTVEEVTMPNIS------AYAASKGGVASLTKALAKEWGRYGIRVN--------VIAPG 203
Query: 243 WWR-------FGTPVRTFSWISRVRPV--TNFQVDLTGTA 273
W+R F P + + R+ P+ T DL G A
Sbjct: 204 WYRTKMTEAVFSDPEKLDYMLKRI-PLGRTGVPEDLKGVA 242
>pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed
With Nadp+
Length = 274
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED-GFETTFQVNHLAHFYL 148
+LD+ L+S++ + +K++ LN+LV NA V F + F+ ++ +F+
Sbjct: 58 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAV---AFKSDDPMPFDIKAEMTLKTNFFA 114
Query: 149 TLQLENALIKGAKLFARVVVVSS 171
T + N L+ K RVV +SS
Sbjct: 115 TRNMCNELLPIMKPHGRVVNISS 137
>pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
pdb|3IOY|B Chain B, Structure Of Putative Short-Chain Dehydrogenase
(Saro_0793) From Novosphingobium Aromaticivorans
Length = 319
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 60 KLFYQNC----WDKANDAISKILT----EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR 111
+L Q C D D+I K L E + + ++LD+ + K A+E + +F
Sbjct: 27 QLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG 86
Query: 112 SLNILVLNAGV 122
++IL NAGV
Sbjct: 87 PVSILCNNAGV 97
>pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
pdb|1YB1|B Chain B, Crystal Structure Of Human 17-Beta-Hydroxysteroid
Dehydrogenase Type Xi
Length = 272
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 67 WDKANDAISKILTEKPSAQCIAME-------LDLCRLKSVKKFAEEYQKKFRSLNILVLN 119
WD I+K E+ +A+C + +D + + A++ + + ++ILV N
Sbjct: 61 WD-----INKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNN 115
Query: 120 AGVFGLG--FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYS 177
AGV F+ + E TF+VN LAHF+ T A+ K +V V+S + S
Sbjct: 116 AGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH--GHIVTVASAAGHVS 173
>pdb|3V8B|A Chain A, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
pdb|3V8B|B Chain B, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
pdb|3V8B|C Chain C, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
pdb|3V8B|D Chain D, Crystal Structure Of A 3-Ketoacyl-Acp Reductase From
Sinorhizobium Meliloti 1021
Length = 283
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 83 SAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED--GFE--TTF 138
Q IA+E D+ + + KF L+I+V NAG+ G+ ++ +D FE T
Sbjct: 76 GGQAIALEADVSDELQXRNAVRDLVLKFGHLDIVVANAGINGV-WAPIDDLKPFEWDETI 134
Query: 139 QVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYIT 180
VN L +LTL L +K + +VVVSS + ++ T
Sbjct: 135 AVN-LRGTFLTLHLTVPYLK-QRGGGAIVVVSSINGTRTFTT 174
>pdb|3S55|A Chain A, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|B Chain B, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|C Chain C, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|D Chain D, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|E Chain E, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|F Chain F, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|G Chain G, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
pdb|3S55|H Chain H, Crystal Structure Of A Putative Short-Chain
DehydrogenaseREDUCTASE From Mycobacterium Abscessus
Bound To Nad
Length = 281
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDG-FE 135
L EK +CI+ ++D+ +++ F E + ++I + NAG+ + E ++
Sbjct: 65 LVEKTGRRCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWD 124
Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
N F + +IK + + R+V VSS
Sbjct: 125 EVIGTNLTGTFNTIAAVAPGMIK--RNYGRIVTVSS 158
>pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUS|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Ligand-Free Form
pdb|3AUT|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUT|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With Nadh
pdb|3AUU|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
pdb|3AUU|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 In Complex With D-Glucose
Length = 269
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y N ++A DA ++ E+ Q I ++ D+ + + V + K+F +L++++ NAGV
Sbjct: 46 YYNNEEEALDAKKEV--EEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGV 103
>pdb|2FNC|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
Length = 381
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 96 LKSVKKFAEEYQKKFRSLNILVLN---AGVFGLG-----FSHTEDGFETTFQVNHLAHFY 147
++ K+ EEY + R V N + F LG F T G + T
Sbjct: 129 IEKAKQIDEEYGGEVRGFIYDVANFYFSAPFILGYGGYVFKETPQGLDVT---------D 179
Query: 148 LTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMTAYNDTK 207
+ L E A +KGAKL R++ + +Y T D++ K L+ + WA+ +Y D
Sbjct: 180 IGLANEGA-VKGAKLIKRMIDEGVLTPGDNYGTMDSMFKEGLAAMIINGLWAIKSYKDAG 238
Query: 208 L 208
+
Sbjct: 239 I 239
>pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|C Chain C, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
pdb|3AY6|D Chain D, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 A258f Mutant In Complex With Nadh And
D-Glucose
Length = 269
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y N ++A DA ++ E+ Q I ++ D+ + + V + K+F +L++++ NAGV
Sbjct: 46 YYNNEEEALDAKKEV--EEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGV 103
>pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
pdb|3AY7|B Chain B, Crystal Structure Of Bacillus Megaterium Glucose
Dehydrogenase 4 G259a Mutant
Length = 269
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y N ++A DA ++ E+ Q I ++ D+ + + V + K+F +L++++ NAGV
Sbjct: 46 YYNNEEEALDAKKEV--EEAGGQAIIVQGDVTKEEDVVNLVQTAIKEFGTLDVMINNAGV 103
>pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|B Chain B, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|C Chain C, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
pdb|2BD0|D Chain D, Chlorobium Tepidum Sepiapterin Reductase Complexed With
Nadp And Sepiapterin
Length = 244
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 80 EKPSAQCIA-------MELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHT 130
EK S +C A + D+ + V++ +++ ++ LV NAGV FG T
Sbjct: 47 EKISLECRAEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLT 106
Query: 131 EDGFETTFQVNHLAHFYLTLQLENALIK---GAKLFARVVVVSSESHRYSYI 179
E+ F+ T N F+LT L AL++ +F V ++++ R+S I
Sbjct: 107 EEDFDYTMNTNLKGTFFLTQAL-FALMERQHSGHIFFITSVAATKAFRHSSI 157
>pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2
Length = 276
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED-GFETTFQVNHLAHFYL 148
+LD+ L+S++ + +K++ L++LV NAG+ F + F +V +F+
Sbjct: 60 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGI---AFKVADPTPFHIQAEVTMKTNFFG 116
Query: 149 TLQLENALIKGAKLFARVVVVSS 171
T + L+ K RVV VSS
Sbjct: 117 TRDVXTELLPLIKPQGRVVNVSS 139
>pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EW8|B Chain B, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EW8|C Chain C, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EW8|D Chain D, Crystal Structure Of The (s)-specific 1-phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EWM|A Chain A, Crystal Structure Of The (S)-Specific 1-Phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
pdb|2EWM|B Chain B, Crystal Structure Of The (S)-Specific 1-Phenylethanol
Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1
Length = 249
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 25/192 (13%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFET---TFQVN 141
+ + ++ D+ + V+ F ++ F +ILV NAG++ L E FE TF++N
Sbjct: 55 RVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPL-IPFDELTFEQWKKTFEIN 113
Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFWAMT 201
+ F L A+ V + + + I T + L +E Y T
Sbjct: 114 VDSGF---------------LMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAY------T 152
Query: 202 AYNDTKLCNVLFGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRP 261
Y TK N+ F LA+ K I +++ T + + + + P
Sbjct: 153 HYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIP 212
Query: 262 VTNFQVDLTGTA 273
+DLTG A
Sbjct: 213 RLQVPLDLTGAA 224
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y KAN+ + +I +K + IA+ D+ + V ++ F ++ILV NAGV
Sbjct: 35 YAGNEQKANEVVDEI--KKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92
>pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp
pdb|3BHI|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Nadp
pdb|3BHJ|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With Glutathione
pdb|3BHM|A Chain A, Crystal Structure Of Human Carbonyl Reductase 1 In Complex
With S-Hydroxymethylglutathione
Length = 276
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 90 ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTED-GFETTFQVNHLAHFYL 148
+LD+ L+S++ + +K++ L++LV NAG+ F + F +V +F+
Sbjct: 60 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGI---AFKVADPTPFHIQAEVTMKTNFFG 116
Query: 149 TLQLENALIKGAKLFARVVVVSS 171
T + L+ K RVV VSS
Sbjct: 117 TRDVCTELLPLIKPQGRVVNVSS 139
>pdb|1G6K|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
pdb|1G6K|B Chain B, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
pdb|1G6K|E Chain E, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
pdb|1G6K|F Chain F, Crystal Structure Of Glucose Dehydrogenase Mutant E96a
Complexed With Nad+
Length = 261
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y++ D+AN + +I +K + IA++ D+ V + K+F L++++ NAG+
Sbjct: 38 YRSKEDEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95
Query: 123 FGLGFSH 129
SH
Sbjct: 96 ANPVSSH 102
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 92 DLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 149
+L ++VK ++ +++ ++ILV NAG+ GL +++ ++ VN + F LT
Sbjct: 64 NLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFNLT 123
Query: 150 LQLENALIKGAKLFARVVVVSS 171
+L + +++ + R++ ++S
Sbjct: 124 RELTHPMMR--RRNGRIINITS 143
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 92 DLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT 149
+L ++VK ++ +++ ++ILV NAG+ GL +++ ++ VN + F LT
Sbjct: 61 NLSDREAVKALGQKAEEEMGGVDILVNNAGITRDGLFVRMSDEDWDAVLTVNLTSVFNLT 120
Query: 150 LQLENALIKGAKLFARVVVVSS 171
+L + +++ + R++ ++S
Sbjct: 121 RELTHPMMR--RRNGRIINITS 140
>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|B Chain B, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|E Chain E, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|F Chain F, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y++ D+AN + +I +K + IA++ D+ V + K+F L++++ NAG+
Sbjct: 38 YRSKEDEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95
Query: 123 FGLGFSH 129
SH
Sbjct: 96 ENPVSSH 102
>pdb|1GEE|A Chain A, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
pdb|1GEE|B Chain B, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
pdb|1GEE|E Chain E, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
pdb|1GEE|F Chain F, Crystal Structure Of Glucose Dehydrogenase Mutant Q252l
Complexed With Nad+
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y++ D+AN + +I +K + IA++ D+ V + K+F L++++ NAG+
Sbjct: 38 YRSKEDEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95
>pdb|3PGX|A Chain A, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|B Chain B, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|C Chain C, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
pdb|3PGX|D Chain D, Crystal Structure Of A Putative Carveol Dehydrogenase From
Mycobacterium Paratuberculosis Bound To Nicotinamide
Adenine Dinucleotide
Length = 280
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFE 135
L E + + LD+ ++++ + ++F L+++V NAGV G + T++ ++
Sbjct: 71 LVEDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWD 130
Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSES 173
T VN L + TL+ + A +VVVSS +
Sbjct: 131 TVIGVN-LTGTWRTLRATVPAMIEAGNGGSIVVVSSSA 167
>pdb|1RWB|A Chain A, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
pdb|1RWB|B Chain B, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
pdb|1RWB|E Chain E, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
pdb|1RWB|F Chain F, Cooperative Effect Of Two Surface Amino Acid Mutations
(Q252l And E170k) Of Glucose Dehydrogenase From Bacillus
Megaterium Iwg3 For The Stabilization Of Oligomeric
State
Length = 261
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y++ D+AN + +I +K + IA++ D+ V + K+F L++++ NAG+
Sbjct: 38 YRSKEDEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGL 95
>pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
pdb|3TN7|B Chain B, Crystal Structure Of Short-Chain Alcohol Dehydrogenase
From Hyperthermophilic Archaeon Thermococcus Sibiricus
Complexed With 5- Hydroxy-Nadp
Length = 257
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 69 KANDAISKILTEKPSAQCIAM---ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
++ D + KI E Q + + LD+ + +SV++F+++ ++F ++++V NAG+
Sbjct: 56 RSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGL 112
>pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon
Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp
Length = 235
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 69 KANDAISKILTEKPSAQCIAM---ELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
++ D + KI E Q + + LD+ + +SV++F+++ ++F ++++V NAG+
Sbjct: 34 RSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGL 90
>pdb|3OEC|A Chain A, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|B Chain B, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|C Chain C, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
pdb|3OEC|D Chain D, Crystal Structure Of Carveol Dehydrogenase From
Mycobacterium Thermoresistibile
Length = 317
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFE 135
L E+ + IA + D+ L S++ +E +F ++ILV N G+ G S T+ +
Sbjct: 101 LVEEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWS 160
Query: 136 TTFQVN 141
Q N
Sbjct: 161 DILQTN 166
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H+ S+ + + ++++ + + FW T Y + +C L
Sbjct: 288 LLAGDKSLSNVI-----AHQISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 338
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 339 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 378
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 379 DPDVAYSSVP 388
>pdb|1QGW|C Chain C, Crystal Structure Of Phycoerythrin 545 From The Marine
Cryptophyte Rhodomonas Cs24
pdb|1QGW|D Chain D, Crystal Structure Of Phycoerythrin 545 From The Marine
Cryptophyte Rhodomonas Cs24
pdb|1XF6|C Chain C, High Resolution Crystal Structure Of Phycoerythrin 545
From The Marine Cryptophyte Rhodomonas Cs24
pdb|1XF6|D Chain D, High Resolution Crystal Structure Of Phycoerythrin 545
From The Marine Cryptophyte Rhodomonas Cs24
pdb|1XG0|C Chain C, High Resolution Crystal Structure Of Phycoerythrin 545
From The Marine Cryptophyte Rhodomonas Cs24
pdb|1XG0|D Chain D, High Resolution Crystal Structure Of Phycoerythrin 545
From The Marine Cryptophyte Rhodomonas Cs24
Length = 177
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNA 120
DA S+++T S DL +++KKF E K+ S+N +V NA
Sbjct: 3 DAFSRVVTNADSKAAYVGGADL---QALKKFISEGNKRLDSVNSIVSNA 48
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 280 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 330
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 331 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 370
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 371 DPDVAYSSVP 380
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 282 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 332
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 333 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 372
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 373 DPNVAYSSVP 382
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 283 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 333
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 334 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 373
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 374 DPDVAYSSVP 383
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 282 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 332
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 333 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 372
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 373 DPDVAYSSVP 382
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 283 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 333
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 334 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 373
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 374 DPDVAYSSVP 383
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 288 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 338
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 339 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 378
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 379 DPDVAYSSVP 388
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 32/130 (24%)
Query: 156 LIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYSDFW---AMTAYNDTKLCNVL 212
L+ G K + V+ +H S+ + + ++++ + + FW T Y + +C L
Sbjct: 282 LLAGDKSLSNVI-----AHEISH----SWTGNLVTNKTWDHFWLNEGHTVYLERHICGRL 332
Query: 213 FGEKLATLWYKYKIALSSRHCCWKITVSKKWWRFGTPVRTFSWISRVRPVTNFQVDLTGT 272
FGEK +++ AL W V+TF P T VDLT
Sbjct: 333 FGEK-----FRHFNALGG------------WGELQNSVKTF---GETHPFTKLVVDLTDI 372
Query: 273 AEKVGLSGLP 282
V S +P
Sbjct: 373 DPDVAYSSVP 382
>pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph And
L-Sorbose Reveals The Structure Bases Of Its Catalytic
Mechanism And High Substrate Selectivity
pdb|3AI1|B Chain B, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph And
L-Sorbose Reveals The Structure Bases Of Its Catalytic
Mechanism And High Substrate Selectivity
pdb|3AI2|A Chain A, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|B Chain B, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|H Chain H, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|D Chain D, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|E Chain E, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|C Chain C, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|F Chain F, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
pdb|3AI2|G Chain G, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph
Length = 263
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
D+ ++A ++ L EK + + + +D+ + V E + F +ILV NAG G
Sbjct: 42 DRLHEA-ARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGT---GS 97
Query: 128 SHT-EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK 186
+ T + + +Q H ++L L+ G + ++ +
Sbjct: 98 NETIMEAADEKWQFYWELHVMAAVRLARGLVPGMRARGGGAIIH--------------NA 143
Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
S+ +V+ W YN TK ++F + LAT K I
Sbjct: 144 SICAVQ---PLWYEPIYNVTKAALMMFSKTLATEVIKDNI 180
>pdb|1MIU|A Chain A, Structure Of A Brca2-dss1 Complex
Length = 738
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 97 KSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE--DGFETTFQVNHLAHFYLTLQLEN 154
K +FAE QKK +L V HTE D E T Q L+ LT Q +
Sbjct: 393 KEALRFAEAQQKKLEALFTKV-----------HTEFKDHEEDTTQRCVLSR-TLTRQQVH 440
Query: 155 ALIKGAKLFARVVVVSSESH 174
AL GA+L+A V S H
Sbjct: 441 ALQDGAELYAAVQYASDPDH 460
>pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph And
L-Sorbose
pdb|3AI3|C Chain C, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph And
L-Sorbose
pdb|3AI3|E Chain E, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph And
L-Sorbose
pdb|3AI3|G Chain G, The Crystal Structure Of L-Sorbose Reductase From
Gluconobacter Frateurii Complexed With Nadph And
L-Sorbose
Length = 263
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
D+ ++A ++ L EK + + + +D+ + V E + F +ILV NAG
Sbjct: 42 DRLHEA-ARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGT----- 95
Query: 128 SHTEDGFETTFQ-VNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISK 186
ET + + FY L L+ A AR +V + I +
Sbjct: 96 ----GSNETIMEAADEKWQFYWEL-----LVMAAVRLARGLVPGMRARGGGAIIHNA--- 143
Query: 187 SVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATLWYKYKI 226
S+ +V+ W YN TK ++F + LAT K I
Sbjct: 144 SICAVQ---PLWYEPIYNVTKAALMMFSKTLATEVIKDNI 180
>pdb|3UHF|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHF|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
Length = 274
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 103 AEEYQKKFRSLNILVLNAGVFGLGFSHTEDG-FETTFQVNHLAHFYLTLQLENALI 157
+EEYQK+ S +NA GL E+G FE F + + +++ + +ALI
Sbjct: 146 SEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALI 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,651,261
Number of Sequences: 62578
Number of extensions: 333621
Number of successful extensions: 785
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 52
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)