RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4251
(292 letters)
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 142 bits (360), Expect = 7e-41
Identities = 48/151 (31%), Positives = 69/151 (45%), Gaps = 21/151 (13%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
K A + + Q ELDL L SV++FA+ ++L+ NAG+ + +
Sbjct: 51 RKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADG----VSGADVLINNAGIMAVPY 101
Query: 128 SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTISKS 187
+ T DGFE+ NHL HF LT L L RVV VSS +H I + ++
Sbjct: 102 ALTVDGFESQIGTNHLGHFALTNLLLPRLT------DRVVTVSSMAHWPGRINLEDLN-- 153
Query: 188 VLSVENYSDFWAMTAYNDTKLCNVLFGEKLA 218
YS AY+ +KL N+LF +L
Sbjct: 154 -WRSRRYS---PWLAYSQSKLANLLFTSELQ 180
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 119 bits (301), Expect = 2e-32
Identities = 36/196 (18%), Positives = 67/196 (34%), Gaps = 37/196 (18%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+ A+ ++ E S + +LD+ L+S++ + +K++ L++LV NAG+
Sbjct: 40 TRGQAAVQQLQAEGLSPRF--HQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVA 97
Query: 128 SHT--EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKDTIS 185
T E T + N + +L + RVV VSS + +
Sbjct: 98 DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ----GRVVNVSSIMSVRALKSCSPEL 153
Query: 186 KSVLSVENYS----------------------DFWAMTAYNDTKLCNVLFGEKLATLWYK 223
+ E + + W +AY TK+ + A
Sbjct: 154 QQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARK--- 210
Query: 224 YKIALSSRHCCWKITV 239
LS + KI +
Sbjct: 211 ----LSEQRKGDKILL 222
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 77.7 bits (191), Expect = 9e-17
Identities = 37/208 (17%), Positives = 66/208 (31%), Gaps = 60/208 (28%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLC-RLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
K ++A+ K L + +LD+ + ++ A+ + F L+ILV NAGV G
Sbjct: 47 TKGHEAVEK-LKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFS 105
Query: 127 FSH--------------------------------TEDGFETTFQVNHLAHFYLTLQLEN 154
T + E ++N+ +T L
Sbjct: 106 VDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165
Query: 155 ALIKGAKLFARVVVVSSESHRYSYITKDTISKSVLSVENYS------------------- 195
L R+V VSS + Y++ +T + + + +
Sbjct: 166 LLQLSDS--PRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENL 223
Query: 196 ---DFW--AMTAYNDTKLCNVLFGEKLA 218
+ W AY +K C + LA
Sbjct: 224 IETNGWPSFGAAYTTSKACLNAYTRVLA 251
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 55.0 bits (133), Expect = 6e-09
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSH 129
+ E +A + + + ++F + K L++L+LN F
Sbjct: 66 QKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHD 125
Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ +VN L++ LT+ L + +VVVSS
Sbjct: 126 DIHHVRKSMEVNFLSYVVLTVAALPMLKQSN---GSIVVVSS 164
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 54.6 bits (132), Expect = 6e-09
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 66 CWD---KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
WD + + A+ +D + + A++ + + ++ILV NAGV
Sbjct: 60 LWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV 118
Query: 123 --FGLGFSHTEDGFETTFQVNHLAHFYLT 149
F+ + E TF+VN LAHF+ T
Sbjct: 119 VYTSDLFATQDPQIEKTFEVNVLAHFWTT 147
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 53.9 bits (130), Expect = 1e-08
Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF--RSLNILVLNAGV---FGLGFSHTED 132
L ++ + L + KS+ F + + L++L+ NAGV +G
Sbjct: 45 LKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRA 104
Query: 133 GFETTFQVNHLAHFYLTLQLENALIKGAKLF---------ARVVVVSS 171
VN + LT +L L A A V+ +SS
Sbjct: 105 VIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 52.2 bits (126), Expect = 4e-08
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNH 142
C A+ DL ++ A+ + L+ILV NAG S+ G+E Q+N
Sbjct: 78 DCQAIPADLSSEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNV 137
Query: 143 LAHFYLTLQLENALIKGAKL--FARVVVVSS 171
+ F QL L + A ARV+ + S
Sbjct: 138 TSVFSCIQQLLPLLRRSASAENPARVINIGS 168
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, infectious D center for structural genomics of
infectious diseases; HET: NAD; 2.05A {Bacillus anthracis
str} PDB: 3i3o_A*
Length = 291
Score = 52.2 bits (126), Expect = 5e-08
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
AN+ + EK +C+ + DL + K +E ++ SLNILV N
Sbjct: 83 GDANETKQYV--EKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQ 140
Query: 128 SH---TEDGFETTFQVNHLAHFYLT 149
T + E TF++N ++F++T
Sbjct: 141 GLEYITAEQLEKTFRINIFSYFHVT 165
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 51.4 bits (124), Expect = 7e-08
Identities = 20/110 (18%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
D+ ++A + EK + + + +D+ + V E + F +ILV NAG
Sbjct: 42 DRLHEAARSL-KEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNET 100
Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSES 173
++ ++ +++ +A L L+ G A+ ++ +S
Sbjct: 101 IMEAADEKWQFYWELLVMAAVRLA----RGLVPGMRARGGGAIIHNASIC 146
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 51.0 bits (123), Expect = 1e-07
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 12/110 (10%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
+ N+ I +I + P A + DL + + E+ + ++IL+ N G+F
Sbjct: 45 ENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK----YPKVDILINNLGIFEPVE 100
Query: 127 -FSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSES 173
F ++ + F+VN ++ LT + +K + RV+ ++SE+
Sbjct: 101 YFDIPDEDWFKLFEVNIMSGVRLT----RSYLKKMIERKEGRVIFIASEA 146
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 51.0 bits (123), Expect = 1e-07
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 70 ANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH 129
A + I E+ + + + DL + + ++ L+IL L AG +
Sbjct: 88 AQQVKALI--EECGRKAVLLPGDLSDESFARSLVHKAREALGGLDILALVAGK---QTAI 142
Query: 130 ------TEDGFETTFQVNHLAHFYLT 149
T + F+ TF VN A F++T
Sbjct: 143 PEIKDLTSEQFQQTFAVNVFALFWIT 168
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 50.4 bits (121), Expect = 1e-07
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 9/113 (7%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR----SLNILVLNAGVF 123
++ ++P + + DL V++ ++ R +L+ NA
Sbjct: 44 SMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATL 103
Query: 124 G---LGFSHTED--GFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
G GF + D + +N + LT NA L VV +SS
Sbjct: 104 GDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS 156
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 50.2 bits (121), Expect = 2e-07
Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 9/110 (8%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
+K A S+I + AQ + D+ + + E+ + +ILV + G G
Sbjct: 42 EKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKA-RDLGGADILVYSTGGPRPGR 100
Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKG--AKLFARVVVVSSES 173
+ ++ ++++ + ++ + K + R+V + S +
Sbjct: 101 FMELGVEDWDESYRLLARSAVWVG----RRAAEQMVEKGWGRMVYIGSVT 146
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 49.5 bits (119), Expect = 3e-07
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 14/117 (11%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRS------LNIL 116
Y N ++A + + +I + ++ +L L V+ + ++ +IL
Sbjct: 38 YGNRKEEAEETVYEI--QSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDIL 95
Query: 117 VLNAGVFGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ NAG+ F TE F+ VN A F++ Q + L +R++ +SS
Sbjct: 96 INNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN----SRIINISS 148
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 49.3 bits (118), Expect = 4e-07
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 16/118 (13%)
Query: 69 KANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF--RSLNILVLNAGVFGLG 126
+ + + + + E+DL + K + + + LN+L NAG+
Sbjct: 59 EQAKELEDLAKNHSNIHIL--EIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKS 116
Query: 127 ---FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK---------LFARVVVVSSE 172
+ T Q N + L L K AK A ++ +SS
Sbjct: 117 ARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 48.8 bits (117), Expect = 5e-07
Identities = 22/111 (19%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y + A + ++++ +K AQ +A++ D+ + V ++ F L+ ++ N+G+
Sbjct: 52 YGSSSKAAEEVVAEL--KKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGM 109
Query: 123 --FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ T++ F+ F +N F++ Q +G R+++ SS
Sbjct: 110 EVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG----GRIILTSS 156
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 48.7 bits (117), Expect = 6e-07
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y N A +S+I + + IA++ D+ ++ + K ++ F L+I V N+GV
Sbjct: 49 YANSTKDAEKVVSEI--KALGSDAIAIKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGV 106
Query: 123 FGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
G TE+ F+ F +N F++ + L +G R+V+ SS
Sbjct: 107 VSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG----GRIVLTSS 153
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 48.3 bits (116), Expect = 8e-07
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
+ A+ D+ L + + ++++L +NAGV +E ++ F VN
Sbjct: 54 PRVHALRSDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVN 113
Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSS 171
F T+Q L + +V SS
Sbjct: 114 TKGAF-FTVQ---RLTPLIREGGSIVFTSS 139
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 47.6 bits (114), Expect = 1e-06
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGF 134
L EK + + D+ +K+ K ++ LV NAGV + +
Sbjct: 44 LKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAW 103
Query: 135 ETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + +N + L L K VV VSS
Sbjct: 104 KKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSS 137
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 47.5 bits (114), Expect = 1e-06
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFG--LGFSH-TEDGFETTF 138
P IA+ L+ + ++ A + +F L+ L+ NA + G ++ F
Sbjct: 64 PQPLIIALNLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVM 123
Query: 139 QVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
VN A F LT L L + A + SS
Sbjct: 124 HVNVNATFMLTRALLPLLKRSED--ASIAFTSS 154
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 46.9 bits (112), Expect = 1e-06
Identities = 12/86 (13%), Positives = 26/86 (30%), Gaps = 10/86 (11%)
Query: 88 AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVNHLAH 145
+ +D+ + S+KK E+ ++ +V G T + T
Sbjct: 38 DVTVDITNIDSIKKMYEQ----VGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 146 FYLTLQLENALIKGAKLFARVVVVSS 171
L L ++L + +
Sbjct: 94 INLVLLGIDSLNDK----GSFTLTTG 115
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 47.6 bits (114), Expect = 1e-06
Identities = 29/145 (20%), Positives = 46/145 (31%), Gaps = 26/145 (17%)
Query: 68 DKANDAISKILTEKPSAQ-CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---- 122
D+ + +IL A+ A+ D+ KF ++ILV NAG
Sbjct: 61 DRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKFGKIDILVNNAGANLAD 120
Query: 123 FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSYITKD 182
+ ++ TF++N A +T + + LIK +V VSS
Sbjct: 121 GTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSS----------- 166
Query: 183 TISKSVLSVENYSDFWAMTAYNDTK 207
V Y K
Sbjct: 167 -------IVAGPQAHSGYPYYACAK 184
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 46.7 bits (112), Expect = 2e-06
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 82 PSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTF 138
Q ++L C ++ ++ A+ + L+ ++ NAG+ G ++
Sbjct: 62 RQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121
Query: 139 QVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
QVN A F LT L L+K +V SS
Sbjct: 122 QVNVNATFMLTQALLPLLLKSDA--GSLVFTSS 152
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 46.8 bits (112), Expect = 3e-06
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
A + KI E + + + D+ +V++ ++ F +++LV NAG+ L
Sbjct: 63 AAAEEVAGKI--EAAGGKALTAQADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTT 120
Query: 128 --SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ F+ VN F + L G R++ +S+
Sbjct: 121 IAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG----GRIINMST 162
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 46.8 bits (112), Expect = 3e-06
Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y N + A + ++ I +K + ++ ++ ++ + + EE K F L+I+ N+GV
Sbjct: 60 YANSTESAEEVVAAI--KKNGSDAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGV 117
Query: 123 FGLGF--SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
G T + F+ F +N F++ + L G R++++ S
Sbjct: 118 VSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG----GRLILMGS 164
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 46.5 bits (111), Expect = 3e-06
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 75 SKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAG-VFGLGFSHT--E 131
I E P+A+ +LD+ + + +K F E ++F+ ++ILV NAG G
Sbjct: 78 KTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIAT 137
Query: 132 DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY 178
+ + F N A +T + +V + S + R +Y
Sbjct: 138 EDIQDVFDTNVTALINITQAVLPIFQAKNS--GDIVNLGSIAGRDAY 182
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 46.4 bits (111), Expect = 4e-06
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 21/123 (17%)
Query: 86 CIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHTEDGFETTFQVNHLA 144
+A+ D + F + + + SL +V NA + D F F V+ LA
Sbjct: 73 AVALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLA 132
Query: 145 HFYLTLQLENALIKGAKLFARVVVVSSES------HRYSYITKDTISKSVLSVENYSDFW 198
+ + L E L A +V +S + +Y +K+ L
Sbjct: 133 PYLINLHCEPLLTASEV--ADIVHISDDVTRKGSSKHIAY----CATKAGL--------E 178
Query: 199 AMT 201
++T
Sbjct: 179 SLT 181
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 46.4 bits (111), Expect = 4e-06
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
D AN ++ E A+ + DL + V K + +K+F ++I + G
Sbjct: 49 DTANKLKDEL--EDQGAKVALYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKP 106
Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+E F+ +N+ ++ Q + ++ +++
Sbjct: 107 IVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPN----GHIITIAT 148
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 46.0 bits (110), Expect = 5e-06
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 141
+ ++ D L + + E+ + + +++L +NAG + TE+ ++ TF N
Sbjct: 75 GGAVGIQADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRN 134
Query: 142 HLAHFYLTLQLENALIKGAKLFAR---VVVVSS 171
T+Q K L AR VV+ S
Sbjct: 135 VKGVL-FTVQ------KALPLLARGSSVVLTGS 160
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 45.6 bits (109), Expect = 5e-06
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT- 130
+ I+ L ++ + LD+ + +SV++F+++ ++F ++++V NAG+
Sbjct: 40 EKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEEL 99
Query: 131 -EDGFETTFQVNHLAHFYLTLQLENALIKGAKLFAR----VVVVSSESHR 175
E+ F +VN L + A + L +V S S R
Sbjct: 100 SEEEFHEMIEVNLLGVWRTL----KAFLDS--LKRTGGLALVTTSDVSAR 143
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 45.2 bits (108), Expect = 7e-06
Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 15/109 (13%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---- 133
L ++ +LD+ ++++ ++ +++ILV NAG+ LG
Sbjct: 40 LKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGL-ALGMEPAHKASVED 98
Query: 134 FETTFQVNHLAHFYLTLQLENALIKGAKLFAR----VVVVSSESHRYSY 178
+ET N+ Y+T A++ G + R ++ + S + + Y
Sbjct: 99 WETMIDTNNKGLVYMT----RAVLPG--MVERNHGHIINIGSTAGSWPY 141
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 45.3 bits (108), Expect = 9e-06
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 68 DKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
++ + +IL ++ D+ + KF L+ILV NAG
Sbjct: 41 ERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPD 100
Query: 127 FSH------TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + ++ T +N + LT + L +V +SS
Sbjct: 101 SQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISS 148
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 45.0 bits (107), Expect = 1e-05
Identities = 11/100 (11%), Positives = 29/100 (29%), Gaps = 23/100 (23%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFETTFQVN 141
+ D+ L + + A+E + ++++ NAG+ G D + ++
Sbjct: 80 FDAHGVVCDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDID 139
Query: 142 HLAHFYLTLQLENALIKGAKLFA----------RVVVVSS 171
+ + F + +S
Sbjct: 140 LWGSIH-----------AVEAFLPRLLEQGTGGHIAFTAS 168
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 44.6 bits (106), Expect = 1e-05
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 16/115 (13%)
Query: 102 FAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAK 161
A+ K + ++ LVL AG+ VN+ L AL KG
Sbjct: 52 IADVLAKCSKGMDGLVLCAGL-----GPQTKVLGNVVSVNYFGATELMDAFLPALKKGH- 105
Query: 162 LFARVVVVSSES---------HRYSYITKDTISKSVLSVENYSDFWAMTAYNDTK 207
VV+SS + + +K+ VE+ + AY +K
Sbjct: 106 -QPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSK 159
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 44.9 bits (107), Expect = 1e-05
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
++ A S + P A+ A D+ V+ FAE ++ +ILV NAG
Sbjct: 43 ERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVST 102
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
T++ + Q+ + +
Sbjct: 103 FAETTDEAWSEELQLKFFSVIHPV 126
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 44.1 bits (105), Expect = 1e-05
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
I + DL + V + +++ AG G T + + N
Sbjct: 49 NAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESN 108
Query: 142 HLAHFYLT 149
++ +
Sbjct: 109 LVSTILVA 116
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 44.8 bits (106), Expect = 1e-05
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 142
+ + +D+ + + E+ KKF ++ILV NA L + + VN
Sbjct: 102 KALPCIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161
Query: 143 LAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + L K A ++ +S
Sbjct: 162 RGTYLASKACIPYLKKSKV--AHILNISP 188
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 44.1 bits (105), Expect = 2e-05
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSH 129
DA L + S + I ++ D+ A ++F ++++ NAGVF +
Sbjct: 48 DACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATM 107
Query: 130 TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
T + F VN FY +ALI RVV+ SS
Sbjct: 108 TPEQLNGIFAVNVNGTFYAVQACLDALIA--SGSGRVVLTSS 147
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 44.3 bits (105), Expect = 2e-05
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
D + A++ + E + + ++LD+ + K A+E + +F ++IL NAGV
Sbjct: 43 DSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQP 102
Query: 128 --SHTEDGFETTFQVN 141
+ D ++ VN
Sbjct: 103 IEESSYDDWDWLLGVN 118
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 44.1 bits (105), Expect = 2e-05
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETT 137
+A LD+ SV FA+ + +++LV NAGV L D +E
Sbjct: 49 RDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERM 108
Query: 138 FQVN 141
VN
Sbjct: 109 IDVN 112
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 44.1 bits (105), Expect = 2e-05
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
++A +S+I E+ + +A+ D +++++ E + L+ILV +AG++
Sbjct: 67 ERAQAVVSEI--EQAGGRAVAIRADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAP 124
Query: 128 --SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
T F+ VN A F L G R++ + S
Sbjct: 125 LEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG----GRIITIGS 166
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 43.0 bits (102), Expect = 4e-05
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE 131
A++ L+ K + + + LD+ ++ + ++F +L L+ NAG+ LG +
Sbjct: 59 QALAGELSAK--TRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGL-ALGTDPAQ 115
Query: 132 DG----FETTFQVNHLAHFYLTLQLENALIKGAKLFAR-----VVVVSSESHRYSY 178
++T N Y T L+ L A +V + S + ++ Y
Sbjct: 116 SCDLDDWDTMVDTNIKGLLYST----RLLLPR--LIAHGAGASIVNLGSVAGKWPY 165
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 43.0 bits (102), Expect = 5e-05
Identities = 15/106 (14%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
+ A K+ +C+ + +D+ +V ++ K+F ++IL+ A
Sbjct: 62 PRVLTAARKLAGATG-RRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCP 120
Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + + F+T ++ F ++ L + +V +++
Sbjct: 121 AGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHG--GVIVNITA 164
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 42.6 bits (101), Expect = 6e-05
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 68 DKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
+I+ K + I + LD+ ++ +K+ +++ILV A +F G
Sbjct: 42 QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDG 101
Query: 127 -FSHTEDGFETTFQVNHLAHFYLT 149
S D F ++N +A + +
Sbjct: 102 SLSEPVDNFRKIMEINVIAQYGIL 125
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 42.6 bits (101), Expect = 6e-05
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQ 139
EK + E+D+ +V + +F L+++V NAG+ LG F F
Sbjct: 67 EKTGRKAYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126
Query: 140 VNHLAHFYLTLQLEN-ALIKGAKLFARVVVVSS 171
V+ T+ L G A ++ S
Sbjct: 127 VD-FVGVINTVHAALPYLTSG----ASIITTGS 154
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 42.5 bits (101), Expect = 6e-05
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
++A + I I E + + + LD+ + +E +K ++LV NAG+
Sbjct: 39 EQAAETIKLI--EAADQKAVFVGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKP 96
Query: 126 GFSHTEDGFETTFQVN 141
TE+ + + VN
Sbjct: 97 LLEVTEEDLKQIYSVN 112
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 42.5 bits (101), Expect = 7e-05
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETT 137
A+ +ELD+ + V + L+ILV NAG+ LG +
Sbjct: 52 TAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRM 111
Query: 138 FQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSESHRYSY 178
N L Y+T L++ VV +SS + R +
Sbjct: 112 IDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRVNV 149
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 42.5 bits (101), Expect = 7e-05
Identities = 18/106 (16%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+K +A +I E+ Q + +++D+ ++K E+ +KF ++IL+ NA +
Sbjct: 41 EKLEEAKLEI--EQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICP 98
Query: 128 SH--TEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + +G+ + + FY + + I+ + ++ + +
Sbjct: 99 AEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIE-KGIKGNIINMVA 143
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 42.1 bits (100), Expect = 8e-05
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
A + +I EK + + ++ ++ + +K+ ++ + F L++ V NA
Sbjct: 40 KAALETAEEI--EKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRP 97
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
E ++ T +N A +
Sbjct: 98 VMELEETHWDWTMNINAKALLFCA 121
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 42.1 bits (100), Expect = 8e-05
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
A S+I + +A+++D+ V E+ +K +++V NAGV
Sbjct: 37 ATAKAVASEI--NQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTP 94
Query: 126 GFSHTEDGFETTFQVN 141
S T + + + +N
Sbjct: 95 IESITPEIVDKVYNIN 110
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 42.2 bits (100), Expect = 9e-05
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 75 SKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--ED 132
++ + I DL + + + + ++I + NAG+ +
Sbjct: 74 AECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTS 133
Query: 133 GFETTFQVNHLAHFYLT 149
G++ F VN LA T
Sbjct: 134 GWKDMFNVNVLALSICT 150
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 41.8 bits (99), Expect = 1e-04
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 4/106 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
+ +++ L E + I + LD+ S A F +L+++ NAG+F
Sbjct: 75 PRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEAR 134
Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ T + VN Y L RV++ SS
Sbjct: 135 LDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTA--SGRGRVILTSS 178
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 41.8 bits (99), Expect = 1e-04
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 68 DKANDAISKILTE-KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG 126
++ + IL Q ++ D+ + K+F +++LV NAG
Sbjct: 41 ERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPD 100
Query: 127 F------SHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
D + T ++N A +T +++ L+ +V VSS
Sbjct: 101 AFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSS 148
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 41.7 bits (99), Expect = 1e-04
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FG 124
+ + ++ + + + + + ++ ++ILV NA V FG
Sbjct: 49 ENVDRTVATL--QGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFG 106
Query: 125 LGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
TE+ ++ VN A +T + + K V++VSS
Sbjct: 107 NIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGG--GSVLIVSS 151
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 41.5 bits (98), Expect = 1e-04
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 72 DAISKILTEKPSAQCIAMELDLCR-LKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT 130
A++++ P D+ + KK ++ + ++++IL+ AG+
Sbjct: 43 TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGIL------D 96
Query: 131 EDGFETTFQVNHLAHFYLTL 150
+ E T +N T
Sbjct: 97 DHQIERTIAINFTGLVNTTT 116
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 40.9 bits (97), Expect = 2e-04
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
D AN + +I ++ Q A D+ + + A+ K ++ILV NAG G
Sbjct: 46 DAANHVVDEI--QQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPKP 103
Query: 127 FSHTEDGFETTFQVNHLAHFYLT 149
F F +++N + F+L+
Sbjct: 104 FDMPMADFRRAYELNVFSFFHLS 126
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 40.6 bits (96), Expect = 2e-04
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
+ A + D+ + V++ +++ ++ LV NAGV FG
Sbjct: 44 ADLEKISLEC--RAEGALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGA 101
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
TE+ F+ T N F+LT
Sbjct: 102 LSDLTEEDFDYTMNTNLKGTFFLT 125
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 40.3 bits (95), Expect = 4e-04
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 4/106 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
D +I + + + A++ D+ V+ E K NI++ NA
Sbjct: 61 DVLKATAEQI-SSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISP 119
Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + ++T + ++TL++ LIK A+ A + +++
Sbjct: 120 TERLSPNAWKTITDIVLNGTAFVTLEIGKQLIK-AQKGAAFLSITT 164
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 40.2 bits (95), Expect = 4e-04
Identities = 19/84 (22%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
D+AN + +I +K + IA++ D+ V + K+F L++++ NAG+
Sbjct: 43 DEANSVLEEI--KKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVS 100
Query: 128 SH--TEDGFETTFQVNHLAHFYLT 149
SH + + N F +
Sbjct: 101 SHEMSLSDWNKVIDTNLTGAFLGS 124
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 40.0 bits (94), Expect = 4e-04
Identities = 6/75 (8%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTEDG---F 134
+ I ++ + + + E+ + ++ + AG + G + ++D
Sbjct: 38 NDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNA 97
Query: 135 ETTFQVNHLAHFYLT 149
+ + + +
Sbjct: 98 DLMIKQSVWSSAIAA 112
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 39.8 bits (94), Expect = 5e-04
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF---SHTEDGFETTFQVN 141
+E D+ + + ++ K ++ LV A V + + +N
Sbjct: 49 GVEPIESDIVKEVLEEGGVDK-LKNLDHVDTLVHAAAVARDTTIEAGSVAE-WHAHLDLN 106
Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ L+ QL AL + V+ ++S
Sbjct: 107 VIVPAELSRQLLPALRAAS---GCVIYINS 133
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 39.5 bits (93), Expect = 5e-04
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 16/88 (18%)
Query: 88 AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG-FSHT-EDGFETTFQVNHLAH 145
A+ DL K EE L++LV G G D E +
Sbjct: 46 ALPADLADELEAKALLEE----AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAH---- 97
Query: 146 FYLTLQLENALIKG--AKLFARVVVVSS 171
++K + AR V +
Sbjct: 98 LLTAA----FVLKHARFQKGARAVFFGA 121
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 39.8 bits (94), Expect = 5e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
Q + D K + +K F ++ LV NAG+ T + VN
Sbjct: 55 QIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVN 113
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 39.8 bits (94), Expect = 5e-04
Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGFSHTEDGFETTFQV 140
+ +++ D+ V +E K + +++++ NA + T + ++
Sbjct: 60 RRALSVGTDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIEL 119
Query: 141 NHLAHFYLT 149
L
Sbjct: 120 TVFGALRLI 128
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 39.8 bits (94), Expect = 5e-04
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
++A A ++I A+++D+ R S+ + L+ILV NA +F L
Sbjct: 43 ERARQAAAEI-----GPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAP 97
Query: 128 SH--TEDGFETTFQVN 141
T + +E F +N
Sbjct: 98 IVEITRESYEKLFAIN 113
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 39.6 bits (93), Expect = 6e-04
Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
A D + L A+ I ++ ++ + V + F +N LV N G
Sbjct: 56 KSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSP 115
Query: 126 GFSHTEDGFETTFQVNHLAHFYLTLQLENALIK 158
+ G+ + N FY+ + ++ +K
Sbjct: 116 AEHISSKGWHAVLETNLTGTFYMCKAVYSSWMK 148
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 39.4 bits (93), Expect = 6e-04
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFE 135
L E+ + +DL + + A + F L++LV NAG+ F+
Sbjct: 64 LGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFD 123
Query: 136 TTFQVNHLAHFYLT 149
T VN A L
Sbjct: 124 ATIAVNLRAPALLA 137
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 39.5 bits (93), Expect = 6e-04
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFE 135
+ + A+ +E D+ VK + K++ S+++LV NAG+ G + +
Sbjct: 40 IHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWR 99
Query: 136 TTFQVN 141
VN
Sbjct: 100 RIIDVN 105
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 39.4 bits (93), Expect = 7e-04
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
+ + + +L P A+ + D+ V+ + ++F ++ NAG+ G
Sbjct: 48 EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQN 107
Query: 127 --FSHTEDGFETTFQVN 141
S T F+ +N
Sbjct: 108 PTESFTAAEFDKVVSIN 124
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 39.2 bits (92), Expect = 7e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGF 134
E P+A + + + +K E+ K ++ V AG + G +
Sbjct: 54 FRENPNAD-HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSV 112
Query: 135 ETTFQVNHLAHFYLT 149
+ +N + F
Sbjct: 113 KGMIDMNLYSAFASA 127
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 39.5 bits (93), Expect = 7e-04
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+ + + + + + ++ D+ + ++ + F L+ILV NAGV
Sbjct: 42 EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVN---- 97
Query: 128 SHTEDGFETTFQVN 141
E +E T Q+N
Sbjct: 98 --NEKNWEKTLQIN 109
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 39.4 bits (93), Expect = 7e-04
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
+ + + D+ Q++ +LN+LV NAG+ G + F ++N
Sbjct: 52 ERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKIN 111
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 39.4 bits (93), Expect = 7e-04
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
++A++A K+ EK + +A D+ + VKK E ++KF L+ +V AG+
Sbjct: 56 EEASEAAQKLT-EKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHP 114
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
D F +VN +Y+
Sbjct: 115 AEEFPLDEFRQVIEVNLFGTYYVC 138
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 39.1 bits (92), Expect = 8e-04
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 99 VKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNHLAHFYLTLQLENAL 156
++K + +K + ++ILVLNAG G T + F+ L +
Sbjct: 68 LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIV----RNY 123
Query: 157 IKG--AKLFARVVVVSSES 173
+ K + R+V ++S S
Sbjct: 124 LPAMKEKGWGRIVAITSFS 142
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 39.0 bits (92), Expect = 9e-04
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
A +A + I + + ++ D+ + V+ F ++ F +ILV NAG++
Sbjct: 40 VPAPEAEAAI--RNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIP 97
Query: 126 GFSHTEDGFETTFQVN 141
T + ++ TF++N
Sbjct: 98 FDELTFEQWKKTFEIN 113
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
+K +++I E + +A LD V F L + + N G
Sbjct: 42 EKLAPLVAEI--EAAGGRIVARSLDARNEDEVTAFLNA-ADAHAPLEVTIFNVGANVNFP 98
Query: 127 -FSHTEDGFETTFQVNHLAHFYLT 149
T+ F +++ A F
Sbjct: 99 ILETTDRVFRKVWEMACWAGFVSG 122
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 38.7 bits (91), Expect = 0.001
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVN 141
+ D+ + ++ + E ++F ++ LV NAGVF T++ ++ VN
Sbjct: 68 PDIHTVAGDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVN 127
Query: 142 HLAHFYLT 149
F++T
Sbjct: 128 VAGFFHIT 135
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 38.6 bits (91), Expect = 0.001
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVNH 142
D+ ++KKF E +K + +++LV NA G+ S + F+ V
Sbjct: 48 NLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGL 107
Query: 143 LAHFYLT 149
A + L+
Sbjct: 108 KAPYELS 114
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 38.7 bits (91), Expect = 0.001
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 5/85 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FG 124
+K +I + + DL ++ FA ++LV NAGV G
Sbjct: 64 EKLRAVEREI--VAAGGEAESHACDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGG 121
Query: 125 LGFSHTEDGFETTFQVNHLAHFYLT 149
+ ++ VN A + L
Sbjct: 122 PLHTMKPAEWDALIAVNLKAPYLLL 146
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 38.7 bits (91), Expect = 0.001
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
+D+ V + + + L+ LV AG+ G +++ ++ TF VN
Sbjct: 46 YPFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVN 105
Query: 142 HLAHFYLT 149
F L
Sbjct: 106 VGGAFNLF 113
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 38.7 bits (91), Expect = 0.001
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
A ++ + A+E+D+ + SV ++ ++L NAGV
Sbjct: 47 MAAQAVVAGL-----ENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRP 101
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
T++ ++ F VN F
Sbjct: 102 AVDITDEEWDFNFDVNARGVFLAN 125
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 38.2 bits (90), Expect = 0.001
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
+ A+++ + K + +E++L +S+ K EE ++ILV NAG+
Sbjct: 41 GERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDGIDILVNNAGI 95
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 38.3 bits (90), Expect = 0.001
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETT 137
+ ++ DL + + + + K S + + LNAG+ G + +
Sbjct: 40 SFSAENLKFIKADLTKQQDITNVLDI--IKNVSFDGIFLNAGILIKGSIFDIDIESIKKV 97
Query: 138 FQVN 141
+N
Sbjct: 98 LDLN 101
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 38.3 bits (90), Expect = 0.001
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
D A ++I ++ + +D+ K + E+ K+ +++LV NAG G
Sbjct: 62 DAAVRVANEI-----GSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGN 116
Query: 128 SH--TEDGFETTFQVN 141
E+ ++ VN
Sbjct: 117 VVTIPEETWDRIMSVN 132
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVNH 142
+ + D+ + ++ F L+ LV NAGV + H + + N
Sbjct: 51 GALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNL 110
Query: 143 LAHFYLT 149
F
Sbjct: 111 TGAFLGI 117
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFETTFQVN 141
+ ++D+ + +K + + +V NAG+ LG T + ++ F VN
Sbjct: 60 NTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVN 118
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
+ ++ I+ + DL ++ ++ +E+ KF +++L+ NAG
Sbjct: 38 GRKAPANIDETIASM--RADGGDAAFFAADLATSEACQQLVDEFVAKFGGIDVLINNAGG 95
Query: 123 F---GLGFSHTEDGFETTFQVNHLAHFYLT 149
+ ++ N + T
Sbjct: 96 LVGRKPLPEIDDTFYDAVMDANIRSVVMTT 125
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 38.3 bits (90), Expect = 0.002
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
+ + K L + + A + + +S +K ++ F ++ + NAG
Sbjct: 57 AQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSG 116
Query: 126 GFSHTEDGFETTFQVN 141
+ + + QV+
Sbjct: 117 ILDGSVEAWNHVVQVD 132
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 38.4 bits (90), Expect = 0.002
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 142
Q + + D+ +V + ++F ++I V NA LG F+ +
Sbjct: 66 QALPIVGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 143 LAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ ++ + ++ +S
Sbjct: 126 RGTYAVSQSCIPHMKGRDN--PHILTLSP 152
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 38.2 bits (90), Expect = 0.002
Identities = 8/84 (9%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
+++ + + + D+ +++ + + ++IL+ NAG+
Sbjct: 44 TLLAESVDTL--TRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKP 101
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
+ ++ N + F ++
Sbjct: 102 MVELELENWQKVIDTNLTSAFLVS 125
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 37.9 bits (89), Expect = 0.002
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
LD+ + ++ +++F S++ LV NAG+ F + + F ++N
Sbjct: 51 DAARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEIN 110
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 37.9 bits (89), Expect = 0.002
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
Y + A A+++I EK +A++ DL V+ KF ++ LV AG
Sbjct: 39 YNGAAEGAATAVAEI--EKLGRSALAIKADLTNAAEVEAAISAAADKFGEIHGLVHVAGG 96
Query: 123 ---FGLGFSHTEDGFETTFQVNHLAHFYLT 149
E + VN + F
Sbjct: 97 LIARKTIAEMDEAFWHQVLDVNLTSLFLTA 126
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 37.9 bits (89), Expect = 0.002
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
+ +A +D ++K ++ L+I+V NAGV T + F +N
Sbjct: 73 RRIVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDIN 132
Query: 142 HLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ + T+ I ++++SS
Sbjct: 133 -VTGTWNTVMAGAPRIIEGGRGGSIILISS 161
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 37.5 bits (88), Expect = 0.002
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG- 126
+ A + I + + I +E ++ + + + +F + +LV NAG G
Sbjct: 47 EGAEAVAAAI--RQAGGKAIGLECNVTDEQHREAVIKAALDQFGKITVLVNNAGGGGPKP 104
Query: 127 FSHTEDGFETTFQVNHLAHFYLT 149
F FE F++N + F L+
Sbjct: 105 FDMPMSDFEWAFKLNLFSLFRLS 127
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 37.5 bits (88), Expect = 0.003
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
+ LD+ + K + F L++LV NAG+ +G ++ VN
Sbjct: 53 DAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVN 112
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 37.5 bits (88), Expect = 0.003
Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----- 133
+ +P +A++ D+ + V++ +E ++ + +L+ NAGV T+D
Sbjct: 54 SGEPPEGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLIANAGV-------TKDQLLMRM 106
Query: 134 ----FETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
F + + N F + + A+++ RVV++SS
Sbjct: 107 SEEDFTSVVETNLTGTFRVVKRANRAMLR--AKKGRVVLISS 146
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 37.5 bits (88), Expect = 0.003
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 4/84 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
D +I + + + D+ + V+ ++ + ++I V NAG+
Sbjct: 67 DALQVVADEI--AGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQA 124
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
+ F+ N F
Sbjct: 125 MLDMPLEEFQRIQDTNVTGVFLTA 148
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 37.6 bits (88), Expect = 0.003
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS-------HTEDGFET 136
+ + D+ L+ K+ AE F ++ L+ NAG++ + + F+
Sbjct: 51 GNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDD 110
Query: 137 TFQVNHLAHFYLT 149
F VN + +
Sbjct: 111 IFHVNVKGYIHAV 123
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 37.5 bits (88), Expect = 0.003
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---- 123
+ A +I I++ +D+ +S K A+ +F ++ LV NA +F
Sbjct: 44 EAAEAVAKQI--VADGGTAISVAVDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMK 101
Query: 124 -GLGFSHTEDGFETTFQVNHLAHFYLT 149
+ + ++ VN + T
Sbjct: 102 LDFLLTIDPEYYKKFMSVNLDGALWCT 128
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 37.2 bits (87), Expect = 0.003
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 20/120 (16%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAE----EYQKKFRSLNILVLNAGVFGLG- 126
+ L + + + DL S+ E + F ++LV NA +
Sbjct: 50 QRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTP 109
Query: 127 ------------FSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFA---RVVVVSS 171
+ F N +A +L +G + VV +
Sbjct: 110 LLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD 169
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 37.2 bits (87), Expect = 0.003
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
+ + L + + + DL + ++V+ + ++ ++ILV NAG+ L
Sbjct: 39 AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTAL 98
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
+ ++ +N A F+ T
Sbjct: 99 IEDFPTEKWDAILALNLSAVFHGT 122
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 37.2 bits (87), Expect = 0.003
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGL 125
++ + S + D+ + + +F +ILV NAGV
Sbjct: 60 PDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEK 119
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
+ ++ VN + F+
Sbjct: 120 IEDFPVEQWDRIIAVNLSSSFHTI 143
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 37.1 bits (87), Expect = 0.004
Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 66 CWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF-- 123
D+ +++ + A+ IA+ D+ K+V+ E ++F L+ + AGV
Sbjct: 35 AVDREERLLAEAVAAL-EAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHS 93
Query: 124 GLGFSHTEDGFETTFQVNHLAHFYLT 149
L ++ + +E +VN F +
Sbjct: 94 ALSWNLPLEAWEKVLRVNLTGSFLVA 119
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 37.1 bits (87), Expect = 0.004
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FG 124
A A+ + ++ +D+ +SV+ ++ ++ILV AG+
Sbjct: 48 AMATKAVEDL--RMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEV 105
Query: 125 LGFSHTEDGFETTFQVN 141
T+ + +N
Sbjct: 106 KAEDMTDGQWLKQVDIN 122
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 37.1 bits (87), Expect = 0.004
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 16/80 (20%)
Query: 79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG----- 133
+E+D+ +V + ++ + +LV NAG+ + D
Sbjct: 48 GSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL-------SADAFLMRM 100
Query: 134 ----FETTFQVNHLAHFYLT 149
FE N F +
Sbjct: 101 TEEKFEKVINANLTGAFRVA 120
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 37.1 bits (87), Expect = 0.004
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Query: 70 ANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH 129
A + + ++D+ + VK+ E+ KK+ ++ILV NAG+ H
Sbjct: 39 AKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLH 98
Query: 130 --TEDGFETTFQVN 141
+ + VN
Sbjct: 99 LTPTEIWRRIIDVN 112
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 36.7 bits (86), Expect = 0.004
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+ + + + + D+ V ++F ++++LV NAG+ G
Sbjct: 37 ETLEETARTHWHAYA-DKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSE 95
Query: 128 SH-----TEDGFETTFQVN 141
+ + F+ VN
Sbjct: 96 AGVLHTTPVEQFDKVMAVN 114
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 36.7 bits (86), Expect = 0.004
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
+ A+ D+ SVK E Q ++ILV NA + F D + VN
Sbjct: 52 KKARAIAADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVN 111
Query: 142 HLAHFYLT 149
F +T
Sbjct: 112 LTGTFIVT 119
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 36.8 bits (86), Expect = 0.004
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVNH 142
Q +A++ D+ V+ F ++ILV NA L + F+ QVN
Sbjct: 63 QGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 143 LAHFYLT 149
F
Sbjct: 123 RGSFVCA 129
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 36.8 bits (86), Expect = 0.005
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQVN 141
+ + D+ + VK E ++F L+ +V NAG + GF ++N
Sbjct: 55 GAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELN 114
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 36.7 bits (86), Expect = 0.005
Identities = 13/77 (16%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FG 124
D+ N + ++ + + ++ D+ + K V++F + + +++L NAG+
Sbjct: 42 DRLNQIVQEL--RGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVT 99
Query: 125 LGFSHTEDGFETTFQVN 141
+++ +E VN
Sbjct: 100 PVAEVSDELWERVLAVN 116
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 36.8 bits (86), Expect = 0.005
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Query: 66 CWDKANDAISKILTEKPSA---QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
++ ++ + + A + D+ V K ++ ++ L+ NAGV
Sbjct: 43 VIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGV 102
Query: 123 F--GLGFSHTEDGFETTFQVNHLAHFYLT 149
T + F + VN F
Sbjct: 103 SVVKPATELTHEDFAFVYDVNVFGVFNTC 131
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 36.9 bits (86), Expect = 0.005
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 17/103 (16%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLK----SVKKFAEEYQKKFRSLNILVL 118
Y N + A +++ L ++ S + + DL S ++ + F ++LV
Sbjct: 54 YHNSAEAA-VSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCFRAFGRCDVLVN 112
Query: 119 NAGVF------------GLGFSHTEDGFETTFQVNHLAHFYLT 149
NA F E N +A F LT
Sbjct: 113 NASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLT 155
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 36.7 bits (86), Expect = 0.005
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR-SLNILVLNAGV--FG 124
+ ND +++ + A DL ++ F LNILV NAG+ +
Sbjct: 44 KELNDCLTQW--RSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYK 101
Query: 125 LGFSHTEDGFETTFQVNHLAHFYLT 149
+T + + +N A ++L+
Sbjct: 102 EAKDYTVEDYSLIMSINFEAAYHLS 126
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 36.8 bits (86), Expect = 0.006
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETT 137
E + + LD+ ++++ + ++F L+++V NAGV G T++ ++T
Sbjct: 73 EDQGRKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTV 132
Query: 138 FQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
VN L + TL+ + A +VVVSS
Sbjct: 133 IGVN-LTGTWRTLRATVPAMIEAGNGGSIVVVSS 165
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 36.3 bits (85), Expect = 0.007
Identities = 11/55 (20%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
A + + ++ + + L++ ++S++ F E + + +++ILV NAG+
Sbjct: 40 ASAEKFENSM--KEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNAGI 92
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 36.4 bits (85), Expect = 0.007
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
A +I +A+ D+ + V E KF ++ILV NAG+
Sbjct: 44 AGAERVAGEI-----GDAALAVAADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQ 98
Query: 128 S---HTEDGFETTFQVN 141
+ + F+ VN
Sbjct: 99 NAELVEPEEFDRIVGVN 115
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 36.4 bits (85), Expect = 0.007
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFR-SLNILVLNAGV--FG 124
+ ++ + + DL K + F LNILV NAGV
Sbjct: 56 KELDECLEIW--REKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHK 113
Query: 125 LGFSHTEDGFETTFQVNHLAHFYLT 149
TE + N A ++L+
Sbjct: 114 EAKDFTEKDYNIIMGTNFEAAYHLS 138
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 36.4 bits (85), Expect = 0.007
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
A +D+ + + + F ++ LV NAGV L T + F+ +N
Sbjct: 75 CGAAACRVDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAIN 134
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 36.4 bits (85), Expect = 0.007
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 66 CWDKANDAISKI--LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV- 122
W ++ A K L + A + ++ KSV++ + +K F ++++ V NAGV
Sbjct: 63 IWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVT 122
Query: 123 ---FGLGFSHTEDGFETTFQVNHLAHFYLT 149
D + V+ +Y +
Sbjct: 123 WTQGPEIDVDNYDSWNKIISVDLNGVYYCS 152
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 36.4 bits (85), Expect = 0.008
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
++ L + + A+ D+ ++V + +K L++LV NAG+ G
Sbjct: 57 ERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTP 116
Query: 128 SH--TEDGFETTFQVN 141
T++ ++ V
Sbjct: 117 VVDMTDEEWDRVLNVT 132
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 36.4 bits (85), Expect = 0.008
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
+ + ++ + D+ ++ + + + ++ILV NAG+
Sbjct: 69 ELVDRGMAAY--KAAGINAHGYVCDVTDEDGIQAMVAQIESEVGIIDILVNNAGIIRRVP 126
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
T F ++ A F ++
Sbjct: 127 MIEMTAAQFRQVIDIDLNAPFIVS 150
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 36.1 bits (84), Expect = 0.008
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 3/80 (3%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSH 129
A L D+ V ++F + ILV +AG G
Sbjct: 62 SAAVDGLRAA-GHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADL 120
Query: 130 TEDGFETTFQVNHLAHFYLT 149
+ + N F +T
Sbjct: 121 DDALWADVLDTNLTGVFRVT 140
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 36.1 bits (84), Expect = 0.008
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETT 137
E+ + IA + D+ L S++ +E +F ++ILV N G+ G S T+ +
Sbjct: 103 EEQGRRIIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDI 162
Query: 138 FQVNHLAHFYLTLQLENA----LIKGAKLFARVVVVSS 171
Q N L + + A +I+ + V+ VSS
Sbjct: 163 LQTN-LIGAWHACR---AVLPSMIERGQ-GGSVIFVSS 195
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 36.0 bits (84), Expect = 0.008
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---- 123
A + + + + + ++ D+ + + + K EE F ++ L+ NAG +
Sbjct: 42 TTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFER 100
Query: 124 GLGFSHTEDGFETTFQVNHLAHFYLT 149
+ ED + Q N A F+L
Sbjct: 101 KKLVDYEEDEWNEMIQGNLTAVFHLL 126
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 36.1 bits (84), Expect = 0.009
Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--------FGLGFSHTEDGFE 135
C+ D+ K V+ + KF +++ V AG+ G +HT + F+
Sbjct: 58 NNCVFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQ 117
Query: 136 TTFQVN 141
VN
Sbjct: 118 RVLDVN 123
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 36.0 bits (84), Expect = 0.009
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
+CI+ ++D+ +++ F E + ++I + NAG+ L ++ N
Sbjct: 72 RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTN 130
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 36.0 bits (84), Expect = 0.009
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDGFETTFQ 139
E ++ +A + D+ +S+ + + L+I+V NAG+ + +DG+
Sbjct: 70 EDIGSRIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA--GDDGWHDVID 127
Query: 140 VNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
VN L Y T+++ + +V++SS
Sbjct: 128 VN-LTGVYHTIKVAIPTLVKQGTGGSIVLISS 158
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 36.0 bits (84), Expect = 0.009
Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 7/109 (6%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+ I+++ A+ I + DL L S + + +F ++ LV NAG+ +
Sbjct: 65 EGVAPVIAEL--SGLGARVIFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVR 122
Query: 128 SH----TEDGFETTFQVNHLAHFYLTLQLENALIK-GAKLFARVVVVSS 171
+ F+T VN + T + A++ A+ ++ ++S
Sbjct: 123 DDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITS 171
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 36.0 bits (84), Expect = 0.010
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GL 125
D + +I A+ DL L+ AEE R +++LV NAG+
Sbjct: 65 DGVKEVADEI--ADGGGSAEAVVADLADLEGAANVAEEL-AATRRVDVLVNNAGIIARAP 121
Query: 126 GFSHTEDGFETTFQVNHLAHFYLT 149
+ + VN A + L+
Sbjct: 122 AEEVSLGRWREVLTVNLDAAWVLS 145
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 36.0 bits (84), Expect = 0.010
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
A + + DL L+I+V NAGV G T+ + + VN
Sbjct: 66 AADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVN 125
Query: 142 HLAHFYLT 149
A F +
Sbjct: 126 VEAPFRIC 133
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 36.0 bits (84), Expect = 0.010
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
+ +L KS+K+ AE +++ ++ILV NAG+
Sbjct: 67 IAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDILVNNAGI 111
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 35.6 bits (83), Expect = 0.011
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE 131
+ I + + L++ +V E K+F +LN+LV NAG+ T+
Sbjct: 66 EGIGAAFKQA-GLEGRGAVLNVNDATAVDALVESTLKEFGALNVLVNNAGI-------TQ 117
Query: 132 DG---------FETTFQVNHLAHFYLT 149
D ++ N A F L+
Sbjct: 118 DQLAMRMKDDEWDAVIDTNLKAVFRLS 144
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 35.6 bits (83), Expect = 0.011
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 14/99 (14%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHT--EDGFE 135
+T S DL + V++ E+ + +V +AG G + +
Sbjct: 41 VTNCLSNNVGYRARDLASHQEVEQLFEQ---LDSIPSTVVHSAGSGYFGLLQEQDPEQIQ 97
Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFAR---VVVVSS 171
T + N + + L+K + VV++ S
Sbjct: 98 TLIENNLSSAINVL----RELVKR--YKDQPVNVVMIMS 130
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 35.5 bits (83), Expect = 0.012
Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 141
+ +DL ++ ++ +++LV NA V L T++ F+ +F+VN
Sbjct: 52 PGIEPVCVDLGDWEATERALGSVGP----VDLLVNNAAVALLQPFLEVTKEAFDRSFEVN 107
Query: 142 HLAHFYLT 149
A ++
Sbjct: 108 LRAVIQVS 115
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 35.6 bits (83), Expect = 0.012
Identities = 8/51 (15%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
D++ + + D+ + + + + + + ++++ILV NAG+
Sbjct: 82 DSVVDEIKSF-GYESSGYAGDVSKKEEISEVINKILTEHKNVDILVNNAGI 131
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 35.7 bits (83), Expect = 0.013
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSH 129
K L E + D+ + ++ +++ +++LV NAG G
Sbjct: 60 RTTLKELREA-GVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAEL 118
Query: 130 TEDGFETTFQVNHLAHFYLT 149
++ + + N F +T
Sbjct: 119 ADELWLDVVETNLTGVFRVT 138
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 35.5 bits (83), Expect = 0.013
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 17/87 (19%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE 131
+A+ + + K A++ ++ VK +E +F SL++LV NAG+ T
Sbjct: 43 EAVVEEIKAK-GVDSFAIQANVADADEVKAMIKEVVSQFGSLDVLVNNAGI-------TR 94
Query: 132 DG---------FETTFQVNHLAHFYLT 149
D ++ N F
Sbjct: 95 DNLLMRMKEQEWDDVIDTNLKGVFNCI 121
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 35.2 bits (82), Expect = 0.013
Identities = 8/84 (9%), Positives = 24/84 (28%), Gaps = 5/84 (5%)
Query: 71 NDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--- 127
+DA E+ + + ++ + + +++ +V N +
Sbjct: 31 HDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLP 90
Query: 128 --SHTEDGFETTFQVNHLAHFYLT 149
+E F+ + L
Sbjct: 91 LEGTSEADIRQMFEALSIFPILLL 114
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 35.1 bits (82), Expect = 0.014
Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
+ DA ++ + + D+ + V+ + F ++ILV NAG+
Sbjct: 40 STSLDATAEEFKAA-GINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVNNAGI 93
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 35.3 bits (82), Expect = 0.014
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQV 140
+ + D+ SV+ +KF +++L NAG T ++
Sbjct: 74 DDALCVPTDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDT 133
Query: 141 NHLAHFYLT 149
N F T
Sbjct: 134 NLTGPFLCT 142
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 35.2 bits (82), Expect = 0.014
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 3/82 (3%)
Query: 71 NDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---FGLGF 127
+D K E + +L + + E + +++LV N F
Sbjct: 31 HDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPID 90
Query: 128 SHTEDGFETTFQVNHLAHFYLT 149
+ + + + + F L
Sbjct: 91 KYAVEDYRGAVEALQIRPFALV 112
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 35.7 bits (83), Expect = 0.015
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 28/117 (23%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF-RSLNILVLNAGVFGLG 126
D A + + ++ + A+ LD+ +V K + ++ILV NAG+
Sbjct: 246 DGAAEDLKRVADK---VGGTALTLDVTADDAVDKITAHVTEHHGGKVDILVNNAGI---- 298
Query: 127 FSHTEDG---------FETTFQVNHLAHFYLTLQLENALIKG---AKLFARVVVVSS 171
T D ++ VN LA LT L+ + RV+ +SS
Sbjct: 299 ---TRDKLLANMDEKRWDAVIAVNLLAPQRLT----EGLVGNGTIGE-GGRVIGLSS 347
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 35.2 bits (82), Expect = 0.015
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFETTFQ 139
+ +DL SV+ + F L+I+ NA T D ++ TF
Sbjct: 57 RGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFT 116
Query: 140 VN 141
VN
Sbjct: 117 VN 118
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 35.2 bits (82), Expect = 0.016
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 16/81 (19%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---- 133
+++ M L++ +S++ + +F ++ILV NAG+ T D
Sbjct: 49 ISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDILVNNAGI-------TRDNLLMR 101
Query: 134 -----FETTFQVNHLAHFYLT 149
+ + N + F L+
Sbjct: 102 MKEEEWSDIMETNLTSIFRLS 122
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 35.1 bits (82), Expect = 0.016
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
+ + + + + IA+ D+ + V ++ F ++ILV NAGV
Sbjct: 43 NEVVDEIKKL-GSDAIAVRADVANAEDVTNMVKQTVDVFGQVDILVNNAGV 92
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 35.3 bits (82), Expect = 0.017
Identities = 12/65 (18%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 80 EKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFET 136
+ + + + E+D+ ++K + ++ L+I+V NAG+ G + +E+ +
Sbjct: 72 KGHNRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTE 131
Query: 137 TFQVN 141
+N
Sbjct: 132 MIDIN 136
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 35.2 bits (82), Expect = 0.018
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
++DL + +F EE +++LV NA + G + + +VN
Sbjct: 52 AFFQVDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVN 108
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 34.8 bits (81), Expect = 0.020
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG--FSHTEDGFETTFQVN 141
+ +DL + +K +++LV NA + + T++ F+ +F VN
Sbjct: 52 PGIEPVCVDLGDWDATEKALGGIGP----VDLLVNNAALVIMQPFLEVTKEAFDRSFSVN 107
Query: 142 HLAHFYLT 149
+ F ++
Sbjct: 108 LRSVFQVS 115
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 34.9 bits (81), Expect = 0.020
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLG---FSHTEDGFETTFQV 140
Q IA+E D+ ++ + KF L+I+V NAG+ G+ ++ T V
Sbjct: 77 GQAIALEADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAV 136
Query: 141 N 141
N
Sbjct: 137 N 137
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 34.5 bits (80), Expect = 0.023
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETT 137
A D+ +++F ++ LV AG G H D F T
Sbjct: 53 AAVRFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFART 112
Query: 138 FQVN 141
VN
Sbjct: 113 VAVN 116
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 34.8 bits (81), Expect = 0.024
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
+ +SK + Q I D+ + V+ + + +++++V NAG+
Sbjct: 40 EEVSKQIEAY-GGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGI 89
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 34.8 bits (81), Expect = 0.024
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
D + + + A++ D+ + V+ +++ L++LV NAG+
Sbjct: 67 DEVVAAIAAA-GGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGI 116
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 34.5 bits (80), Expect = 0.026
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGF 134
+ + A+ D+ V + +F L++LV NAG T + +
Sbjct: 77 IGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQW 136
Query: 135 ETTFQVN 141
N
Sbjct: 137 NGIVAAN 143
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 34.5 bits (80), Expect = 0.029
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+ A + + + + + D+ ++V + + F ++ L NAG G
Sbjct: 42 EALEKAEASV--REKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFA 99
Query: 128 S---HTEDGFETTFQVN 141
+ D F +N
Sbjct: 100 PVQDYPSDDFARVLTIN 116
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 34.5 bits (80), Expect = 0.030
Identities = 20/113 (17%), Positives = 44/113 (38%), Gaps = 19/113 (16%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF 127
+ + A +D+ +S ++ AE+ F +++L+ NAG+
Sbjct: 60 NDHVSTWLMHERDAG-RDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNAGI----- 113
Query: 128 SHTEDG---------FETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
T D ++ + + A F +T Q +++ + F R+V + S
Sbjct: 114 --TRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVE--RRFGRIVNIGS 162
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 34.4 bits (80), Expect = 0.031
Identities = 18/96 (18%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTEDG---------FE 135
A E ++ S K+ ++ + + +++LV NAG+ T D ++
Sbjct: 64 DFYASEGNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGI-------TRDVVFRKMTREDWQ 116
Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
N + F +T Q+ + +++ + + R++ +SS
Sbjct: 117 AVIDTNLTSLFNVTKQVIDGMVE--RGWGRIINISS 150
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 34.2 bits (79), Expect = 0.033
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFE 135
L + A+ LD+ + + A + ++ +++LV NAG +G TE
Sbjct: 45 LVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELR 104
Query: 136 TTFQVN 141
F+++
Sbjct: 105 DLFELH 110
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 33.8 bits (78), Expect = 0.039
Identities = 5/71 (7%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRS--LNILVLNAGVFGLGFSHTE---DGFETTF 138
+ + +++ + + E K ++ ++ AG + G + ++ + +
Sbjct: 46 SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMW 105
Query: 139 QVNHLAHFYLT 149
+ + +
Sbjct: 106 KQSIWTSTISS 116
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 34.0 bits (79), Expect = 0.040
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 16/87 (18%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSHTE 131
+ +++ + S + +L ++ + + L+ LV NAG+ T
Sbjct: 40 EEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGGLDTLVNNAGI-------TR 92
Query: 132 DG---------FETTFQVNHLAHFYLT 149
D +E + N A F T
Sbjct: 93 DTLLVRMKDEDWEAVLEANLSAVFRTT 119
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 33.6 bits (78), Expect = 0.046
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 87 IAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLA 144
+ +D+ SV++ E L+ +V AG+ + + +E +VN
Sbjct: 52 HPVVMDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTG 111
Query: 145 HFYLT 149
F +
Sbjct: 112 SFLVA 116
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 33.7 bits (78), Expect = 0.049
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF-RSLNILVLNAGVF--GLGFSHTEDGFE 135
P A + D+ ++ + E+ Q F R +++V AG+ +ED ++
Sbjct: 58 EGPPRGNHAAFQADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWD 117
Query: 136 TTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
VN F +T AL+ ++ +SS
Sbjct: 118 KVIAVNLKGTFLVTQAAAQALVS-NGCRGSIINISS 152
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 33.8 bits (78), Expect = 0.052
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 85 QCIAMELDLCRLKSVKKFAEEYQK-KFRSLNILVLNAGVFGLGFSHTEDG---------F 134
QC+ + D + V+ E+ + + L++LV NA +T + +
Sbjct: 55 QCVPVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMW 114
Query: 135 ETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
+ V H++ ++ ++ + +VV+SS
Sbjct: 115 DDINNVGLRGHYFCSVYGARLMVPAGQ--GLIVVISS 149
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 33.7 bits (78), Expect = 0.057
Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF---G 124
+ A+ ++ I + + +A+ D+ + ++F L+ LV NAG+
Sbjct: 62 EAADAVVAAI--TESGGEAVAIPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQ 119
Query: 125 LGFSHTEDGFETTFQVNHLAHFYLT 149
+ + E +VN
Sbjct: 120 RVDEMSVERIERMLRVNVTGSILCA 144
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 33.4 bits (77), Expect = 0.062
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGL-------GFSHTEDGFET 136
+ + ++ SV E + R +V + G G GF
Sbjct: 76 NRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTK 135
Query: 137 TFQVN 141
T +
Sbjct: 136 TIDLY 140
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 33.2 bits (77), Expect = 0.069
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 68 DKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKF-RSLNILVLNAGV--FG 124
+ N+ +SK +K Q D +K + F L+IL+ N G
Sbjct: 49 YELNECLSKW--QKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSK 106
Query: 125 LGFSHTEDGFETTFQVNHLAHFYLT 149
+T + F N + ++L+
Sbjct: 107 PTLDYTAEDFSFHISTNLESAYHLS 131
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 33.3 bits (77), Expect = 0.070
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGF 134
E + IA ++D+ +++ ++ + L+I++ NA + G +
Sbjct: 83 QVEALGRRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTW 142
Query: 135 ETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSS 171
VN L ++T ++ I K +V SS
Sbjct: 143 RDMIDVN-LNGAWITARVAIPHIMAGKRGGSIVFTSS 178
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 33.3 bits (77), Expect = 0.073
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 81 KPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH----TEDGFET 136
+ D+ + + V+ + K L+I+ N GV + F+
Sbjct: 61 GSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKR 120
Query: 137 TFQVN 141
+N
Sbjct: 121 VMDIN 125
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 32.9 bits (76), Expect = 0.077
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
+ + DL + ++ +++F ++ILV NAG+ + + ++ +N
Sbjct: 51 VKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALN 110
Query: 142 HLAHFYLT 149
A F+ T
Sbjct: 111 LSAVFHGT 118
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 33.3 bits (77), Expect = 0.079
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFS---HTEDGFETTFQV 140
+ A+ D+ + E ++F L+ NAG G + +G+ T
Sbjct: 57 GEAAALAGDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDT 116
Query: 141 N 141
N
Sbjct: 117 N 117
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 32.8 bits (76), Expect = 0.084
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 88 AMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGFSH--TEDGFETTFQVN 141
LD+ + K + +FA E ++ L++L AG G E ++ + +N
Sbjct: 54 TRVLDVTKKKQIDQFANEVER----LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLN 105
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 33.1 bits (76), Expect = 0.090
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 16/87 (18%)
Query: 79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFET 136
+ + + ++LV NA F + EDG E
Sbjct: 72 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 131
Query: 137 T--------------FQVNHLAHFYLT 149
F N +A ++L
Sbjct: 132 CVGDREAMETATADLFGSNAIAPYFLI 158
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 33.2 bits (76), Expect = 0.091
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 16/87 (18%)
Query: 79 TEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVF--GLGFSHTEDGFET 136
+ + + ++LV NA F + EDG E
Sbjct: 109 VATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEP 168
Query: 137 T--------------FQVNHLAHFYLT 149
F N +A ++L
Sbjct: 169 CVGDREAMETATADLFGSNAIAPYFLI 195
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 32.2 bits (74), Expect = 0.17
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 7/64 (10%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV------FGLGFSHTEDGFETT 137
+ D+ +V A + + +L I+V AG + F
Sbjct: 52 DRARFAAADVTDEAAVAS-ALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKI 110
Query: 138 FQVN 141
+N
Sbjct: 111 VDIN 114
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 1.80A {Mycobacterium avium}
Length = 322
Score = 31.6 bits (72), Expect = 0.24
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 108 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLT----LQLENALIKGAK 161
+ F L++LV NAG+ + + +E+ F+ V+ HF G
Sbjct: 110 ETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKA 169
Query: 162 LFARVVVVSSES 173
+ R++ SS +
Sbjct: 170 VDGRIINTSSGA 181
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 31.4 bits (72), Expect = 0.26
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 4/86 (4%)
Query: 68 DKANDAISKILTEKPSA-QCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV---F 123
DK A+ ++ + D+ + + L+ +V AG
Sbjct: 46 DKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENI 105
Query: 124 GLGFSHTEDGFETTFQVNHLAHFYLT 149
G + + T +N Y+
Sbjct: 106 GPITQVDSEAWRRTVDLNVNGTMYVL 131
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 31.3 bits (72), Expect = 0.29
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Query: 84 AQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSHTEDGFETTFQVN 141
+ + DL + K + + L++LV A V + + + ++
Sbjct: 43 LGAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLH 101
Query: 142 HLAHFYLT 149
F L
Sbjct: 102 LDVAFLLA 109
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 31.6 bits (72), Expect = 0.35
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 108 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA----- 160
K+ +++ILV NAG+ ++ +++ QV+ + F L+ + A
Sbjct: 391 DKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLS--------RLAWPYFV 442
Query: 161 -KLFARVVVVSSESHRY 176
K F R++ ++S S Y
Sbjct: 443 EKQFGRIINITSTSGIY 459
Score = 30.1 bits (68), Expect = 1.1
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 108 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA----- 160
K F ++++++ NAG+ TE ++ V+ F +T K A
Sbjct: 87 KNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVT--------KAAWPYFQ 138
Query: 161 -KLFARVVVVSSES 173
+ + R+V SS +
Sbjct: 139 KQKYGRIVNTSSPA 152
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 30.9 bits (70), Expect = 0.40
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGVFGLGF--SHTEDGFE 135
+ELD+ SV + ++ + +++L+ NAG G + T + F
Sbjct: 53 FARDNDVDLRTLELDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFA 112
Query: 136 TTFQVN 141
+ +N
Sbjct: 113 ELYDIN 118
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 30.9 bits (71), Expect = 0.42
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 72 DAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV--FGLGFSH 129
A+ + E +A + D+ +++ A E + ++ILV +AG+
Sbjct: 46 AALDRAAQELGAAVAARIVADVTDAEAMTAAAAEA-EAVAPVSILVNSAGIARLHDALET 104
Query: 130 TEDGFETTFQVNHLAHFYLT 149
+ + VN F+ +
Sbjct: 105 DDATWRQVMAVNVDGMFWAS 124
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2,
beta-oxidation, peroxisome, SDR, steroid biosynthesis,
oxidoreductase, NADP; HET: NAI; 2.38A {Rattus
norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Length = 319
Score = 30.8 bits (70), Expect = 0.54
Identities = 12/74 (16%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 108 KKFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGA----- 160
F ++++V NAG+ +++ ++ +V+ F +T + A
Sbjct: 88 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVT--------RAAWDHMK 139
Query: 161 -KLFARVVVVSSES 173
+ + R+++ +S S
Sbjct: 140 KQNYGRIIMTASAS 153
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.58
Identities = 44/311 (14%), Positives = 80/311 (25%), Gaps = 109/311 (35%)
Query: 8 LKQHLLNKLLHPASTYNGCLAIL---------------C-----TGDMEFYPRYTGLKKK 47
++ L L Y CL +L C T + +
Sbjct: 230 IQAELRRLLKSK--PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 48 DGNLCFDLVQSSKLFYQNCWDKANDAISKILTEK----PSAQC---------IAMEL--D 92
L S D+ + K L + P IA +
Sbjct: 288 H----ISLDHHSMTLTP---DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 93 LCRLKSVKKF-----------------AEEYQKKFRSLNILVLNAGV---------FGLG 126
L + K EY+K F L++ +A + F +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 127 FSHTE--------------DGFETTFQVNHLAHFYLTLQLENALIKGAKLFARVVVVSSE 172
S E+T + + + L ++LEN L +V
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENE----YALHRSIV----- 450
Query: 173 SHRYSYITK-DTISKSVLSVENYSDFWAMTAYNDTKLCNVLFGEKLATL--------WYK 223
Y+ D+ ++ Y F++ ++ L N+ E++ + +
Sbjct: 451 -DHYNIPKTFDSDDLIPPYLDQY--FYSHIGHH---LKNIEHPERMTLFRMVFLDFRFLE 504
Query: 224 YKIALSSRHCC 234
KI S
Sbjct: 505 QKIRHDSTAWN 515
Score = 29.1 bits (64), Expect = 2.1
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 14/57 (24%)
Query: 186 KSVLSVENYSD-----------FWAMTAYNDTKLCNVLFGEKLATLWYKYKIALSSR 231
K+ ++++ FW + N VL E L L Y+ +SR
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVL--EMLQKLLYQIDPNWTSR 216
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 29.4 bits (67), Expect = 1.2
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 78 LTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILVLNAGV 122
L +L + + +L+ILV NAG+
Sbjct: 54 LGNALKDNYTIEVCNLANKEECSNLISK----TSNLDILVCNAGI 94
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi
structural genomics consortium, SGC, amino-acid
biosynthesi aminotransferase; HET: PLP; 2.50A {Homo
sapiens}
Length = 377
Score = 29.0 bits (66), Expect = 1.9
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 157 IKGAKLFARVVVVSSESHRYSYI 179
+ AK F + +V + Y+ I
Sbjct: 119 AEEAKKFGTINIVHPKLGSYTKI 141
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 28.6 bits (64), Expect = 2.5
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 109 KFRSLNILVLNAGVF--GLGFSHTEDGFETTFQVNHLAHFYLTLQLENALIKGAKLFARV 166
F ++ILV NAG+ +E + V+ F T + + R+
Sbjct: 99 AFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAA--FPYMKKQNYGRI 156
Query: 167 VVVSSES 173
++ SS S
Sbjct: 157 IMTSSNS 163
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid
synthesis, rossmann-like fold, enoyl-ACP reductas
binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} PDB:
3oif_A* 2qio_A* 3oje_A 3ojf_A*
Length = 266
Score = 28.3 bits (64), Expect = 2.9
Identities = 3/55 (5%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILV 117
Y ++ ++ ++ I + D+ ++ +++ ++ +
Sbjct: 40 YAG--ERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQVGVIHGIA 92
>4alk_A ENR, enoyl-[acyl-carrier-protein] reductase [NADPH];
oxidoreductase, short-chain dehydrogenase/reductase
superfam fatty acid biosynthesis; HET: NAP E9P GLU;
1.90A {Staphylococcus aureus} PDB: 4alj_A* 4ali_A*
4alm_A 4aln_A 3gr6_A* 3gns_A* 3gnt_A 4all_A*
Length = 282
Score = 28.0 bits (63), Expect = 3.7
Identities = 7/55 (12%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 63 YQNCWDKANDAISKILTEKPSAQCIAMELDLCRLKSVKKFAEEYQKKFRSLNILV 117
Y+ +++ + K+L + + ++D+ + V E+ K +++ +
Sbjct: 65 YRK--ERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVY 117
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 4.5
Identities = 32/240 (13%), Positives = 61/240 (25%), Gaps = 101/240 (42%)
Query: 111 RSLNILVLNAGVFGLGFSHTEDGFETTFQVNHLAHFYLTLQL-----------------E 153
R L + SH E V + F + QL +
Sbjct: 7 RPLTL------------SHGS--LEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAAD 51
Query: 154 NALIKGAKLFAR------VVVVSSESHRYSYITK--------------D----------- 182
+ A+L + +V S+ ++ + D
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 183 ---TISKSVLSVENY----------------SDFWAMTAYNDTKLCNVLFG--------- 214
T+ K+ ++NY S + + +L +FG
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV-AIFGGQGNTDDYF 170
Query: 215 EKLATLWYKYK------IALSSRHCCWKITVSKKWWR-FGTPVRTFSWISR--VRPVTNF 265
E+L L+ Y I S+ I + + F + W+ P ++
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.431
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,384,114
Number of extensions: 242233
Number of successful extensions: 798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 757
Number of HSP's successfully gapped: 200
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.5 bits)