BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4254
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4 PE=1 SV=1
Length = 706
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 37/52 (71%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ ++TA+I +++ F+ AWTPYAV++ +G G L+TP++ + PA+FAK
Sbjct: 307 KNEIKTAKIAFIVISLFMSAWTPYAVVSALGTLGYQDLVTPYLQSIPAMFAK 358
>sp|P90680|OPSB_APIME Opsin, blue-sensitive OS=Apis mellifera GN=BLOP PE=1 SV=2
Length = 377
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSR 108
++ VR A++ + FLLAWTPYA + IG +G+ L+TP + PA+FAK + +D
Sbjct: 275 SAEVRIAKVAFTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTMLPAVFAKTVSCIDPW 334
Query: 109 IY 110
IY
Sbjct: 335 IY 336
>sp|P91657|OPS5_DROME Opsin Rh5 OS=Drosophila melanogaster GN=Rh5 PE=2 SV=1
Length = 382
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 46 RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
A ++ +R A+ L++ + F+LAWTPY+V+ IG FG+ LITP+VS P + K
Sbjct: 266 NADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACK 322
>sp|P31356|OPSD_TODPA Rhodopsin OS=Todarodes pacificus GN=RHO PE=1 SV=2
Length = 448
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
N+ +R A+I +++V FLL+W+PYAV+ + QFG +TP+ + P +FAK
Sbjct: 254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAK 305
>sp|O16005|OPSD_SEPOF Rhodopsin OS=Sepia officinalis GN=RHO PE=2 SV=1
Length = 464
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
++ ++ A+I +++V FLL+W+PYAV+ + QFG +TP+ + P +FAK
Sbjct: 254 SAEMKLAKISIVIVTQFLLSWSPYAVVALLAQFGPIEWVTPYAAQLPVMFAK 305
>sp|P24603|OPSD_LOLFO Rhodopsin OS=Loligo forbesi GN=RHO PE=1 SV=1
Length = 452
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
N+ ++ A+I +++V FLL+W+PYAV+ + QFG +TP+ + P +FAK
Sbjct: 254 NAEMKLAKISIVIVTQFLLSWSPYAVVALLAQFGPIEWVTPYAAQLPVMFAK 305
>sp|P09241|OPSD_ENTDO Rhodopsin OS=Enteroctopus dofleini GN=RHO PE=1 SV=1
Length = 455
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 37/52 (71%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
++ ++ A+I ++++ F+L+W+PYA+I + QFG A +TP+ + P +FAK
Sbjct: 255 SAEMKLAKISMVIITQFMLSWSPYAIIALLAQFGPAEWVTPYAAELPVLFAK 306
>sp|O15973|OPSD1_MIZYE Rhodopsin, GQ-coupled OS=Mizuhopecten yessoensis GN=SCOP1 PE=1 SV=1
Length = 499
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
S +R ++I + + F+++W+PYA+I I QFG A ITP VS P + AK
Sbjct: 272 SELRISKIAMTVTCLFIISWSPYAIIALIAQFGPAHWITPLVSELPMMLAK 322
>sp|Q26495|OPS2_SCHGR Opsin-2 OS=Schistocerca gregaria GN=Lo2 PE=2 SV=1
Length = 380
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSR 108
++ +R A++ L + FL +WTPYAV+ IG FG+ + +TP + PA+ AK + +D
Sbjct: 272 SAEIRIAKVALTIFFLFLCSWTPYAVVAMIGAFGNRAALTPLSTMIPAVTAKIVSCIDPW 331
Query: 109 IY 110
+Y
Sbjct: 332 VY 333
>sp|Q9UHM6|OPN4_HUMAN Melanopsin OS=Homo sapiens GN=OPN4 PE=1 SV=1
Length = 478
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 37/53 (69%)
Query: 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
L S + A+I+L++++ F+L+W PY+ + + G A ++TP++S+ PA+ AK
Sbjct: 288 LQSECKMAKIMLLVILLFVLSWAPYSAVALVAFAGYAHVLTPYMSSVPAVIAK 340
>sp|P17646|OPS4_DROVI Opsin Rh4 OS=Drosophila virilis GN=Rh4 PE=3 SV=2
Length = 383
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRI 109
+ +R A+ + + F ++WTPY V++ IG FGD SL+TP + PA K + +D +
Sbjct: 278 AEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPFV 337
Query: 110 Y 110
Y
Sbjct: 338 Y 338
>sp|P08255|OPS4_DROME Opsin Rh4 OS=Drosophila melanogaster GN=Rh4 PE=1 SV=2
Length = 378
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRI 109
+ +R A+ + + F ++WTPY V++ IG FGD SL+TP + PA K + +D +
Sbjct: 274 AEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPFV 333
Query: 110 Y 110
Y
Sbjct: 334 Y 334
>sp|Q17094|OPSD_ALLSU Rhodopsin (Fragment) OS=Alloteuthis subulata GN=RHO PE=1 SV=1
Length = 439
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
++ ++ A+I +++V LL+W+PYA++ + QFG +TP+ + P +FAK
Sbjct: 247 SAEMKLAKISIVIVTQSLLSWSPYAIVALLAQFGPIEWVTPYAAQLPVMFAK 298
>sp|P29404|OPS4_DROPS Opsin Rh4 OS=Drosophila pseudoobscura pseudoobscura GN=Rh4 PE=1
SV=2
Length = 380
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRI 109
+ +R A+ + + F ++WTPY V++ IG FGD SL+TP + PA K + +D +
Sbjct: 275 AEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATMIPACTCKLVACIDPFV 334
Query: 110 Y 110
Y
Sbjct: 335 Y 335
>sp|O57422|OPN4B_XENLA Melanopsin-B OS=Xenopus laevis GN=opn4b PE=2 SV=1
Length = 534
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ A+I +++I F+L+W+PYA +T I G +TP+ PA+ AK
Sbjct: 247 KMAKIAFVIIIVFVLSWSPYACVTLIAWAGHGKSLTPYSKTVPAVIAK 294
>sp|Q8R456|OPN4_RAT Melanopsin OS=Rattus norvegicus GN=Opn4 PE=2 SV=1
Length = 474
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 37/53 (69%)
Query: 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
L S + A++ L++++ F+L+W PY+ + +G G + ++TP++S+ PA+ AK
Sbjct: 285 LQSEWKMAKVALIVILLFVLSWAPYSTVALVGFAGYSHILTPYMSSVPAVIAK 337
>sp|O96107|OPS3_MANSE Opsin-3 OS=Manduca sexta GN=OP3 PE=2 SV=1
Length = 384
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 54 VRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRIY 110
+R A++ + F+ AWTPYA +T G FGD +L+TP + PA+ K + +D +Y
Sbjct: 280 IRIAKVAFTIFFLFICAWTPYAFVTMTGAFGDRTLLTPIATMIPAVCCKVVSCIDPWVY 338
>sp|Q25158|OPSC2_HEMSA Compound eye opsin BCRH2 OS=Hemigrapsus sanguineus PE=2 SV=1
Length = 377
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 45 HRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ A + +R A+ L+ V + + WTPYA+I+ G GD S ITP VS PA+ AK
Sbjct: 268 NEADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVMGDTSGITPLVSTLPALLAK 325
>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive OS=Apis mellifera GN=UVOP PE=1 SV=1
Length = 371
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 5/57 (8%)
Query: 51 NSAVRTAQILLM---LVICFL--LAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
N++ ++A+I + + ICFL L+WTPY V++ IG FG+ +L+TP V+ PA K
Sbjct: 262 NTSSQSAEIRIAKAAITICFLYVLSWTPYGVMSMIGAFGNKALLTPGVTMIPACTCK 318
>sp|P04950|OPS3_DROME Opsin Rh3 OS=Drosophila melanogaster GN=Rh3 PE=1 SV=1
Length = 383
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRI 109
+ +R A+ + + F +WTPY V++ IG FGD +L+TP + PA K + +D +
Sbjct: 278 AEIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTPGATMIPACACKMVACIDPFV 337
Query: 110 YIL 112
Y +
Sbjct: 338 YAI 340
>sp|O02465|OPS2_MANSE Opsin-2 OS=Manduca sexta GN=OP2 PE=2 SV=2
Length = 377
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
++ +R A+ L + F+ +WTPY V+ IG FG+ L+TP V+ PA+ K
Sbjct: 272 SAEIRIAKAALTVCFLFVASWTPYGVMALIGAFGNQQLLTPGVTMIPAVACK 323
>sp|P28680|OPS3_DROPS Opsin Rh3 OS=Drosophila pseudoobscura pseudoobscura GN=Rh3 PE=1
SV=3
Length = 382
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFL--VDSRI 109
+ +R A+ + + F +WTPY V++ IG FGD +L+TP + PA K + +D +
Sbjct: 277 AEIRIAKAAITICFLFFASWTPYGVMSLIGAFGDKTLLTPGATMIPACTCKMVACIDPFV 336
Query: 110 Y 110
Y
Sbjct: 337 Y 337
>sp|Q804X9|OPN4A_GADMO Melanopsin-A OS=Gadus morhua GN=opn4a PE=2 SV=1
Length = 561
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 46 RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
R + + + A+I ++++ ++L+W+PYA +T I G A++++P+ PA+ AK
Sbjct: 243 RQKSIRTEWKLAKIAFVVIVVYVLSWSPYACVTMISWSGHANILSPYSKTVPAVIAK 299
>sp|Q4U4D2|OPN4_PODSI Melanopsin OS=Podarcis sicula GN=OPN4 PE=2 SV=2
Length = 475
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 39 KLAMPIHRATPLNSAVRT----AQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVS 94
KL +R + ++ +V++ A+I + ++ F+L+W+PYA +T I G A + P+
Sbjct: 217 KLGSTYNRKSNVSQSVKSEWKLAKIAFVAIVVFVLSWSPYACVTLIAWAGYAKTLNPYSK 276
Query: 95 ATPAIFAK 102
+ PA+ AK
Sbjct: 277 SVPAVIAK 284
>sp|Q6XL69|OPN4_RUTRU Melanopsin OS=Rutilus rutilus GN=opn4 PE=2 SV=1
Length = 500
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 35/48 (72%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ A+I L++++ F+++W+PY+V+ G + L+TP++++ PA+ AK
Sbjct: 283 KMAKIALLVILLFVISWSPYSVVALTATAGYSHLLTPYMNSVPAVIAK 330
>sp|Q5XXP2|OPN4_PHOSU Melanopsin OS=Phodopus sungorus GN=OPN4 PE=2 SV=1
Length = 469
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 45 HRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
HR L S + A++ L++++ F+L+W PY+ + + G + ++TP++S+ PA+ AK
Sbjct: 282 HR---LQSEWKMAKVALIVILLFVLSWAPYSTVALVAFAGYSHILTPYMSSVPAVIAK 336
>sp|Q5YKK9|OPN4_FELCA Melanopsin OS=Felis catus GN=OPN4 PE=2 SV=1
Length = 487
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 36/53 (67%)
Query: 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
L + A+I L++++ F+L+W PY+++ + G A ++TP++++ PA+ AK
Sbjct: 283 LQREWKMAKIELLVILLFVLSWAPYSIVALMAFAGYAHVLTPYMNSVPAVIAK 335
>sp|Q1JPS6|OPN4L_DANRE Melanopsin-like OS=Danio rerio GN=opn4l PE=2 SV=1
Length = 500
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 34/48 (70%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ A++ L++++ F+++W+PY+V+ G + +TP++++ PA+ AK
Sbjct: 283 KMAKVALVVIVLFIISWSPYSVVALTATAGYSHFLTPYMNSVPAVIAK 330
>sp|Q9QXZ9|OPN4_MOUSE Melanopsin OS=Mus musculus GN=Opn4 PE=1 SV=1
Length = 521
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%)
Query: 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
S + A++ L++++ F+L+W PY+ + + G + ++TP++S+ PA+ AK
Sbjct: 287 SEWKMAKVALIVILLFVLSWAPYSTVALVAFAGYSHILTPYMSSVPAVIAK 337
>sp|Q2KNE5|OPN4A_DANRE Melanopsin-A OS=Danio rerio GN=opn4a PE=2 SV=3
Length = 593
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 37/59 (62%)
Query: 44 IHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ R L + + A+I L++++ ++++W+PY+ + G + +TP++++ PA+ AK
Sbjct: 286 MKRFQRLKNEWKMAKIALIVILMYVISWSPYSTVALTAFAGYSDFLTPYMNSVPAVIAK 344
>sp|Q804Q2|OPN4B_GADMO Melanopsin-B OS=Gadus morhua GN=opn4b PE=2 SV=1
Length = 615
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ ++ +++I ++ +W+PYA +T I G S ++P+ A PA+ AK
Sbjct: 240 KLTKVAFVVIIVYVHSWSPYACVTLIAWAGYGSHLSPYSKAVPAVIAK 287
>sp|P35360|OPSL_LIMPO Lateral eye opsin OS=Limulus polyphemus PE=1 SV=1
Length = 376
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
++ R A++ +M V + +AWTPY +I++ G F + +TP + ++FAK
Sbjct: 267 SAECRLAKVAMMTVGLWFMAWTPYLIISWAGVFSSGTRLTPLATIWGSVFAK 318
>sp|Q9H1Y3|OPN3_HUMAN Opsin-3 OS=Homo sapiens GN=OPN3 PE=1 SV=1
Length = 402
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
+ A++ +++ FL+ W PY VI F+ G L+TP +S +FAK
Sbjct: 252 KLAKMCFLMIFTFLVCWMPYIVICFLVVNGHGHLVTPTISIVSYLFAK 299
>sp|Q8HY69|OPSD_SMICR Rhodopsin OS=Sminthopsis crassicaudata GN=RHO PE=1 SV=2
Length = 348
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
PLT I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PLTVIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P PA FAK S IY
Sbjct: 274 YIFTHQGSDFGPIFMTLPAFFAK---SSSIY 301
>sp|P35361|OPSO_LIMPO Ocellar opsin OS=Limulus polyphemus PE=1 SV=1
Length = 376
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK 102
++ R A++ +M V + +AWTPY +I + G F + +TP + ++FAK
Sbjct: 267 SAECRLAKVAMMTVGLWFMAWTPYLIIAWAGVFSSGTRLTPLATIWGSVFAK 318
>sp|P28683|OPSG_CHICK Green-sensitive opsin OS=Gallus gallus GN=PRA1 PE=1 SV=1
Length = 355
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 45 HRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAK-- 102
AT + ++++++V+ F+LAWTPYAV+ F + T + A PA F+K
Sbjct: 239 ESATTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFTNKGADFTATLMAVPAFFSKSS 298
Query: 103 FLVDSRIYILV 113
L + IY+L+
Sbjct: 299 SLYNPIIYVLM 309
>sp|Q68J47|OPSD_LOXAF Rhodopsin OS=Loxodonta africana GN=RHO PE=1 SV=1
Length = 348
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
P+T I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PMTIIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P + PA FAK S IY
Sbjct: 274 YIFTHQGSDFGPILMTLPAFFAK---SSAIY 301
>sp|O93459|OPSD_SCYCA Rhodopsin OS=Scyliorhinus canicula GN=rho PE=2 SV=1
Length = 354
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVI 77
S PLT I C G + T+ A T + ++++++VI FL+ W PYA +
Sbjct: 213 SIPLTIIFFCYGRLVC-TVKEAAAQQQESETTQRAEREVTRMVIIMVIAFLICWLPYASV 271
Query: 78 TFIGQFGDASLITPWVSATPAIFAK--FLVDSRIYILV 113
F S P PA FAK L + IYIL+
Sbjct: 272 AFFIFCNQGSEFGPIFMTIPAFFAKAASLYNPLIYILM 309
>sp|P49912|OPSD_RABIT Rhodopsin OS=Oryctolagus cuniculus GN=RHO PE=1 SV=1
Length = 348
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
PL I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PLIIIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P PA FAK S IY
Sbjct: 274 YIFTHQGSNFGPIFMTIPAFFAK---SSSIY 301
>sp|P32308|OPSD_CANFA Rhodopsin OS=Canis familiaris GN=RHO PE=1 SV=1
Length = 348
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
P+ I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PMIVIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P PA FAK S IY
Sbjct: 274 YIFTHQGSDFGPIFMTLPAFFAK---SSSIY 301
>sp|Q95KU1|OPSD_FELCA Rhodopsin OS=Felis catus GN=RHO PE=1 SV=1
Length = 348
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
P+ I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PMIVIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P PA FAK S IY
Sbjct: 274 YIFTHQGSNFGPIFMTLPAFFAK---SSSIY 301
>sp|O62796|OPSD_TRIMA Rhodopsin OS=Trichechus manatus GN=RHO PE=1 SV=1
Length = 348
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
P+ I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PMIVIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAK 102
S P PA FAK
Sbjct: 274 YIFTHQGSNFGPIFMTLPAFFAK 296
>sp|O18766|OPSD_PIG Rhodopsin OS=Sus scrofa GN=RHO PE=1 SV=1
Length = 348
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVI 77
S PL I C G + +T+ A AT + ++++++V+ FL+ W PYA +
Sbjct: 213 SIPLVIIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWLPYASV 271
Query: 78 TFIGQFGDASLITPWVSATPAIFAK 102
F S P PA FAK
Sbjct: 272 AFYIFTHQGSDFGPIFMTIPAFFAK 296
>sp|P02700|OPSD_SHEEP Rhodopsin OS=Ovis aries GN=RHO PE=1 SV=2
Length = 348
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVI 77
S PL I C G + +T+ A AT + ++++++VI FL+ W PYA +
Sbjct: 213 SIPLIVIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGV 271
Query: 78 TFIGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
F S P PA FAK S +Y
Sbjct: 272 AFYIFTHQGSDFGPIFMTIPAFFAK---SSSVY 301
>sp|P79863|OPSD_LEUER Rhodopsin OS=Leucoraja erinacea GN=rho PE=1 SV=1
Length = 354
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKF--LVDSRIYIL 112
++++++V+ FL+ W PYA + F TP+ PA FAK + + IYIL
Sbjct: 249 EVTRMVIIMVVAFLICWVPYASVAFYIFINQGCDFTPFFMTVPAFFAKSSAVYNPLIYIL 308
Query: 113 V 113
+
Sbjct: 309 M 309
>sp|P08100|OPSD_HUMAN Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
P+ I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PMIIIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAK 102
S P PA FAK
Sbjct: 274 YIFTHQGSNFGPIFMTIPAFFAK 296
>sp|P51474|OPSG3_ASTFA Green-sensitive opsin-3 OS=Astyanax fasciatus GN=RH11 PE=2 SV=1
Length = 354
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 55 RTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKF--LVDSRIYIL 112
++++++V+ FL+AWTPYA + F + T A PA F+K L + IY+L
Sbjct: 252 EVTRMVILMVVGFLVAWTPYATVAAWIFFNKGAAFTAQFMAVPAFFSKSSALFNPIIYVL 311
Query: 113 V 113
+
Sbjct: 312 L 312
>sp|O62794|OPSD_PHOVI Rhodopsin OS=Phoca vitulina GN=RHO PE=1 SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
P+ I C G + +T+ A AT + ++++++VI FL+ W PYA + F
Sbjct: 215 PMIVIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAK 102
S P PA FAK
Sbjct: 274 YIFTHQGSNFGPIFMTLPAFFAK 296
>sp|O62798|OPSD_TURTR Rhodopsin OS=Tursiops truncatus GN=RHO PE=1 SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
PL I C G + +T+ A AT + ++++++V+ FL+ W PYA + F
Sbjct: 215 PLVIIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P P+ FAK S IY
Sbjct: 274 YIFTHQGSDFGPIFMTIPSFFAK---SSSIY 301
>sp|O62792|OPSD_GLOME Rhodopsin OS=Globicephala melas GN=RHO PE=1 SV=1
Length = 348
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 20 PLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITF 79
PL I C G + +T+ A AT + ++++++V+ FL+ W PYA + F
Sbjct: 215 PLVIIFFCYGQLV-FTVKEAAAQQQESATTQKAEKEVTRMVIIMVVAFLICWVPYASVAF 273
Query: 80 IGQFGDASLITPWVSATPAIFAKFLVDSRIY 110
S P P+ FAK S IY
Sbjct: 274 YIFTHQGSDFGPIFMTIPSFFAK---SSSIY 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.143 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,359,863
Number of Sequences: 539616
Number of extensions: 1205972
Number of successful extensions: 4356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 4101
Number of HSP's gapped (non-prelim): 304
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)