Query psy4254
Match_columns 114
No_of_seqs 146 out of 1080
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 20:42:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 1.2E-19 2.5E-24 131.0 5.8 97 17-113 218-321 (423)
2 PHA03234 DNA packaging protein 99.7 2.1E-16 4.5E-21 114.0 7.9 86 18-113 207-302 (338)
3 PHA03235 DNA packaging protein 99.6 1.2E-14 2.6E-19 107.3 7.7 87 17-113 213-309 (409)
4 PHA02834 chemokine receptor-li 99.6 7.2E-15 1.6E-19 105.3 5.7 87 17-113 198-295 (323)
5 PHA02638 CC chemokine receptor 99.5 5.8E-14 1.3E-18 103.9 7.9 87 17-113 282-383 (417)
6 PF00001 7tm_1: 7 transmembran 99.4 9.1E-13 2E-17 89.1 8.4 94 17-110 157-257 (257)
7 PHA03087 G protein-coupled che 99.3 8E-12 1.7E-16 89.5 5.8 88 17-113 212-309 (335)
8 KOG4220|consensus 99.2 1.1E-11 2.4E-16 90.5 2.7 62 50-112 409-472 (503)
9 PF10324 7TM_GPCR_Srw: Serpent 97.8 0.00015 3.2E-09 51.8 8.0 97 18-114 202-304 (318)
10 KOG2087|consensus 97.5 1.5E-06 3.3E-11 62.9 -5.9 88 18-113 202-292 (363)
11 PF02101 Ocular_alb: Ocular al 96.7 0.0075 1.6E-07 44.5 6.6 94 13-108 194-301 (405)
12 PF11970 Git3_C: G protein-cou 96.1 0.065 1.4E-06 30.8 6.7 61 52-112 6-69 (76)
13 PF05296 TAS2R: Mammalian tast 95.7 0.17 3.7E-06 36.3 9.3 58 18-75 190-251 (303)
14 PF10323 7TM_GPCR_Srv: Serpent 94.2 0.47 1E-05 33.7 7.9 50 22-71 177-226 (283)
15 PF05462 Dicty_CAR: Slime mold 92.7 1.8 3.9E-05 31.3 8.9 25 60-84 204-228 (303)
16 PF10320 7TM_GPCR_Srsx: Serpen 90.5 0.7 1.5E-05 32.3 4.8 31 50-80 179-209 (257)
17 PF10327 7TM_GPCR_Sri: Serpent 90.3 1.7 3.8E-05 31.2 6.7 34 50-83 232-265 (303)
18 PF10317 7TM_GPCR_Srd: Serpent 85.9 10 0.00022 26.9 8.4 62 50-112 219-281 (292)
19 KOG2575|consensus 84.0 1.4 3.1E-05 33.3 3.3 25 53-77 254-278 (510)
20 PF10321 7TM_GPCR_Srt: Serpent 81.4 6.1 0.00013 28.7 5.7 82 22-112 209-292 (313)
21 PF03402 V1R: Vomeronasal orga 78.2 3 6.4E-05 29.6 3.2 33 49-81 192-224 (265)
22 PF10326 7TM_GPCR_Str: Serpent 64.6 2.7 5.7E-05 29.9 0.5 62 19-83 207-269 (307)
23 PF03155 Alg6_Alg8: ALG6, ALG8 60.4 12 0.00026 28.8 3.3 25 52-76 219-243 (469)
24 PF06196 DUF997: Protein of un 48.3 24 0.00052 20.4 2.6 18 55-72 5-22 (80)
25 PF09889 DUF2116: Uncharacteri 46.4 36 0.00078 18.5 2.9 18 54-71 36-53 (59)
26 PF06072 Herpes_US9: Alphaherp 43.9 55 0.0012 17.9 3.3 24 50-73 25-49 (60)
27 PF10328 7TM_GPCR_Srx: Serpent 42.7 1.1E+02 0.0025 21.2 7.9 27 51-77 203-229 (274)
28 PF10322 7TM_GPCR_Sru: Serpent 40.7 1.4E+02 0.0031 21.7 6.3 16 50-65 239-254 (307)
29 PF10319 7TM_GPCR_Srj: Serpent 40.3 1.5E+02 0.0032 21.8 7.4 61 50-112 238-301 (310)
30 PF13061 DUF3923: Protein of u 33.4 23 0.0005 19.7 0.9 27 3-29 25-51 (66)
31 PF05393 Hum_adeno_E3A: Human 32.7 51 0.0011 19.5 2.3 12 61-72 45-56 (94)
32 PF03613 EIID-AGA: PTS system 32.7 85 0.0018 22.4 3.8 15 17-31 223-237 (264)
33 PF15188 CCDC-167: Coiled-coil 29.8 62 0.0013 19.0 2.3 18 57-74 67-84 (85)
34 PRK13629 threonine/serine tran 28.4 1.3E+02 0.0028 23.2 4.4 58 15-72 211-271 (443)
35 PHA02655 hypothetical protein; 25.8 52 0.0011 18.6 1.4 22 10-31 61-82 (94)
36 COG3821 Predicted membrane pro 24.8 68 0.0015 22.2 2.1 16 62-77 8-23 (234)
37 PF04238 DUF420: Protein of un 23.4 1.8E+02 0.004 18.4 3.8 26 52-77 33-58 (133)
38 KOG4220|consensus 23.1 1.1E+02 0.0024 23.7 3.1 20 18-37 203-222 (503)
39 TIGR01912 TatC-Arch Twin argin 22.6 2.7E+02 0.0059 19.4 4.8 26 51-76 8-33 (237)
40 PF05478 Prominin: Prominin; 22.3 3E+02 0.0065 22.9 5.7 23 57-79 460-482 (806)
41 PF00002 7tm_2: 7 transmembran 20.1 35 0.00075 23.1 0.0 19 56-74 196-214 (242)
No 1
>KOG4219|consensus
Probab=99.79 E-value=1.2e-19 Score=131.00 Aligned_cols=97 Identities=14% Similarity=0.214 Sum_probs=76.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccccc--cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcch
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHR--ATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA---SLITP 91 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~--~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~---~~~~~ 91 (114)
|.+|++|+..+|.+|++.+|..+..+++.. .++.++|+|+.||++++++.|++||+|||+.+++....++ .....
T Consensus 218 YflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~ 297 (423)
T KOG4219|consen 218 YFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQ 297 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHH
Confidence 578999999999999999998776554332 2346678999999999999999999999999988654321 22334
Q ss_pred HHHHHHHHHHhcCc--Chhhhhhc
Q psy4254 92 WVSATPAIFAKFLV--DSRIYILV 113 (114)
Q Consensus 92 ~~~~~~~~~~~s~~--NPiiY~~~ 113 (114)
..+....|+++|++ ||+||+++
T Consensus 298 ~vyl~~~WLaMSst~yNPiIY~~l 321 (423)
T KOG4219|consen 298 QVYLAIYWLAMSSTCYNPIIYCFL 321 (423)
T ss_pred HHHHHHHHHHHHHhhhccHhhhhh
Confidence 45566789999887 99999985
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.67 E-value=2.1e-16 Score=114.02 Aligned_cols=86 Identities=10% Similarity=0.023 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcc----
Q psy4254 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD---ASLIT---- 90 (114)
Q Consensus 18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~---~~~~~---- 90 (114)
.+|+++|.+||.+|.+.+++ . +.++++|+.|++++++++|++||+|||++.+++.... .....
T Consensus 207 ~iPl~im~~cY~~I~~~L~~---~-------~~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~ 276 (338)
T PHA03234 207 IFPTMIFSFFYVIFCKALHA---L-------TEKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQ 276 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHh---h-------hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHH
Confidence 68999999999999544432 1 1234679999999999999999999999887654321 11111
Q ss_pred -hHHHHHHHHHHh--cCcChhhhhhc
Q psy4254 91 -PWVSATPAIFAK--FLVDSRIYILV 113 (114)
Q Consensus 91 -~~~~~~~~~~~~--s~~NPiiY~~~ 113 (114)
.....++.++++ |+.||+||++.
T Consensus 277 ~~~~~~v~~~La~~nsclNPiIY~f~ 302 (338)
T PHA03234 277 REILQIIIRLMPEIHCFSNPLVYAFT 302 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHh
Confidence 122334445554 44499999985
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.56 E-value=1.2e-14 Score=107.27 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=57.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-C---
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD----AS-L--- 88 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~----~~-~--- 88 (114)
+++|+++|++||.+|.+.++.. + .++++|..+++.++++.|++||+||++..++..+.. .+ .
T Consensus 213 f~iPl~im~~~Y~~I~~~l~~~------~----~~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~ 282 (409)
T PHA03235 213 GIAPVVMMTWFYTFFYRTLKRA------S----YKKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHIN 282 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------h----hhcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhh
Confidence 5789999999999995444321 1 122457788888899999999999999888764421 11 0
Q ss_pred cchHHHHHHHHHHh--cCcChhhhhhc
Q psy4254 89 ITPWVSATPAIFAK--FLVDSRIYILV 113 (114)
Q Consensus 89 ~~~~~~~~~~~~~~--s~~NPiiY~~~ 113 (114)
.......++.++++ |+.||+||+++
T Consensus 283 ~~~~~~~i~~~La~~ns~lNPiIY~~~ 309 (409)
T PHA03235 283 LRDAVSTLSRLVPNLHCLLNPILYAFL 309 (409)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHh
Confidence 11122334444444 44499999985
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.55 E-value=7.2e-15 Score=105.27 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=58.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------c
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-------I 89 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~-------~ 89 (114)
+++|+.+|.+||.+|.+.++ +. + +++++|..|+++++++.|++||+||++..++..+.+.+. .
T Consensus 198 f~iPl~ii~~~Y~~I~~~l~---~~---~----~~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~ 267 (323)
T PHA02834 198 IVIPLIILIYCYSKILYTLK---NC---K----NKNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHF 267 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHH---hc---c----CcccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHH
Confidence 46899999999999954432 21 1 123568889999999999999999999987765432110 0
Q ss_pred chH--HHHHHHHHHhc--CcChhhhhhc
Q psy4254 90 TPW--VSATPAIFAKF--LVDSRIYILV 113 (114)
Q Consensus 90 ~~~--~~~~~~~~~~s--~~NPiiY~~~ 113 (114)
... ...++.+++.+ +.||+||+++
T Consensus 268 ~~~~~~~~i~~~l~~~ns~iNPiIY~~~ 295 (323)
T PHA02834 268 KKIVYSIDIAELISFVHCCVNPIIYAFV 295 (323)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHh
Confidence 111 12234445544 4499999975
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.51 E-value=5.8e-14 Score=103.89 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=58.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA---------- 86 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~---------- 86 (114)
+.+|+++|.+||.+|.+.++ +. +.++++|..|++++++++|++||+||++..++..+...
T Consensus 282 f~lPl~vmi~cY~~I~~~L~---~~-------~~~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~ 351 (417)
T PHA02638 282 MFIPIIIFAFCYIKIILKLK---QL-------KKSKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEH 351 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH---Hh-------hccccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccc
Confidence 36899999999999954442 21 11235677899999999999999999998887654311
Q ss_pred -CCcc--hHHHHHHHHH--HhcCcChhhhhhc
Q psy4254 87 -SLIT--PWVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 87 -~~~~--~~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
.... +....++..+ .+++.||++|++.
T Consensus 352 ~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~ 383 (417)
T PHA02638 352 ICGFIKLGYAMMLAEAISLTHCCINPLIYTLI 383 (417)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 0011 1112233344 4555599999985
No 6
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.43 E-value=9.1e-13 Score=89.11 Aligned_cols=94 Identities=22% Similarity=0.329 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccc----cccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cch
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPI----HRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-ITP 91 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~----~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~-~~~ 91 (114)
+.+|+.++..+|.++.+..++.++..+. ..+++.++++|.++++.++++.|++||+|+.+..++....+... ...
T Consensus 157 ~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~ 236 (257)
T PF00001_consen 157 FILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISS 236 (257)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHH
T ss_pred cccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhH
Confidence 4689999999999997666654432211 11123456789999999999999999999999998887765442 233
Q ss_pred HHHHHHHHHH--hcCcChhhh
Q psy4254 92 WVSATPAIFA--KFLVDSRIY 110 (114)
Q Consensus 92 ~~~~~~~~~~--~s~~NPiiY 110 (114)
.......+++ +++.||++|
T Consensus 237 ~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 237 ILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcEEC
Confidence 3344444444 444599999
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.27 E-value=8e-12 Score=89.54 Aligned_cols=88 Identities=19% Similarity=0.331 Sum_probs=57.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-CCc--
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD----A-SLI-- 89 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~----~-~~~-- 89 (114)
+.+|+.++.++|.++.+.+ ++. ++.++++|+.|++.+++++|++||+|+++..++..... . ...
T Consensus 212 ~~lP~~ii~~~y~~i~~~l---~~~------~~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~ 282 (335)
T PHA03087 212 MLIPLTILLYCYSKILITL---KGI------NKSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVK 282 (335)
T ss_pred HHHHHHHHHHHHHHHHHHH---Hhc------ccchhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHH
Confidence 4689999999999994332 221 11235678999999999999999999999876654311 1 111
Q ss_pred -chHHHHHHHHH--HhcCcChhhhhhc
Q psy4254 90 -TPWVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 90 -~~~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
......+..++ .+++.||+||+++
T Consensus 283 ~~~~~~~i~~~l~~~ns~~NPiIY~~~ 309 (335)
T PHA03087 283 YIQYALHVTEIISLSHCCINPLIYAFV 309 (335)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHc
Confidence 11112233333 4455599999985
No 8
>KOG4220|consensus
Probab=99.18 E-value=1.1e-11 Score=90.46 Aligned_cols=62 Identities=21% Similarity=0.406 Sum_probs=50.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCc--Chhhhhh
Q psy4254 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLV--DSRIYIL 112 (114)
Q Consensus 50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~~s~~--NPiiY~~ 112 (114)
..+++|++|++..|++.|++||+||+++.++..|.+. .++.....+..|+++-|+ ||++|++
T Consensus 409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~-CiP~tlW~~gYwLCYINSTiNP~CYAL 472 (503)
T KOG4220|consen 409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN-CIPETLWTFGYWLCYINSTINPLCYAL 472 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc-ccchhHhhhhhheeeecccccHHHHHH
Confidence 3678999999999999999999999999999998765 355555666666655554 9999986
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.82 E-value=0.00015 Score=51.79 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=59.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcch---HH
Q psy4254 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA-SLITP---WV 93 (114)
Q Consensus 18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~-~~~~~---~~ 93 (114)
.+|.+........+++.+++.++.++...+++.+++.+.++++..+.+.|+++=+|..+..++..+..+ ..... ..
T Consensus 202 iiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~ 281 (318)
T PF10324_consen 202 IIPCILLPILTILLIIELRKAKKRRKKLSSSKSKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQL 281 (318)
T ss_pred hhhHHHHHHHHHHHHHHHHhccHhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 356666666666665555544332221111123356789999999999999999999999888664222 11111 11
Q ss_pred HHH--HHHHHhcCcChhhhhhcC
Q psy4254 94 SAT--PAIFAKFLVDSRIYILVL 114 (114)
Q Consensus 94 ~~~--~~~~~~s~~NPiiY~~~l 114 (114)
..+ .....|+++|++||.++.
T Consensus 282 ~~~~~~l~~~ns~~h~~ic~~mS 304 (318)
T PF10324_consen 282 SIIFNILITINSSIHFFICCFMS 304 (318)
T ss_pred HHHHHHHHHHHhhhHHHhhhhhh
Confidence 122 223467777999998863
No 10
>KOG2087|consensus
Probab=97.50 E-value=1.5e-06 Score=62.87 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=52.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH-
Q psy4254 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSAT- 96 (114)
Q Consensus 18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~- 96 (114)
.+-+++|++||+++ ....++...+ ... .+.+..|-+..++..-++||.|.+...+...++. +..+.....+
T Consensus 202 ~lafiiia~~Y~~i---y~~l~~~~~~---~~~-~~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~-~li~~~~sk~l 273 (363)
T KOG2087|consen 202 LLAFIIIAFSYGKI---YCSLRKGDLS---ATL-ISTSVAKRMAFLVFTDCICWCPIAFFKFSALIGV-ELISVSYSKWL 273 (363)
T ss_pred HHHHHHHHHHhhhh---heeeecCCCc---ccc-chhhhhhCeeEEEEccccccCchheeeeHHhcCC-cccChhhceeE
Confidence 46788999999999 3333221111 111 1125555566677788999999998887765543 2222221111
Q ss_pred --HHHHHhcCcChhhhhhc
Q psy4254 97 --PAIFAKFLVDSRIYILV 113 (114)
Q Consensus 97 --~~~~~~s~~NPiiY~~~ 113 (114)
...=.||+.||++|++.
T Consensus 274 lv~flPlns~~NP~LYa~f 292 (363)
T KOG2087|consen 274 LVFFLPLNSCLNPFLYAFF 292 (363)
T ss_pred EEEEEEcccccCchhHHHc
Confidence 11125777799999985
No 11
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.73 E-value=0.0075 Score=44.52 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=47.2
Q ss_pred eeeeccchHHHHHHHHHHHHHHHHHHhhhc-----cccc-cCcchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q psy4254 13 RYQVRSPPLTKICDCGGVVTNYTLAYKLAM-----PIHR-ATPLNSA-VRTAQILLMLVICFLLAWTPYAVITFIGQFG- 84 (114)
Q Consensus 13 ~~~~~~iPl~vi~~~y~~i~~~~~~~~~~~-----~~~~-~~~~~~~-~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~- 84 (114)
+|...-+|+++.+...-.+. ....++.. ++.. +++.|+. +.+.+-.+-++++|.+||+|.-+-.++..+.
T Consensus 194 hYvttY~PlllVlvaNPiLy--~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~ 271 (405)
T PF02101_consen 194 HYVTTYIPLLLVLVANPILY--IKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLE 271 (405)
T ss_pred hHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhh
Confidence 45555578887776665552 22222211 1111 1112222 2233345668899999999988765543221
Q ss_pred -CCC-----CcchHHHHHHHHHHhcCcChh
Q psy4254 85 -DAS-----LITPWVSATPAIFAKFLVDSR 108 (114)
Q Consensus 85 -~~~-----~~~~~~~~~~~~~~~s~~NPi 108 (114)
+.. ...........|+.+...||.
T Consensus 272 ~~~~i~~~sl~~~~~a~~t~W~IMaIlNPl 301 (405)
T PF02101_consen 272 MQPDINGGSLKQVRNAALTTWFIMAILNPL 301 (405)
T ss_pred cccccccccccchhhHHHHHHHHHHHHhHH
Confidence 110 011112344568877777874
No 12
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.06 E-value=0.065 Score=30.78 Aligned_cols=61 Identities=11% Similarity=0.281 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCc--Chhhhhh
Q psy4254 52 SAVRTAQILLMLVICFLLAWT-PYAVITFIGQFGDASLITPWVSATPAIFAKFLV--DSRIYIL 112 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~-P~~v~~l~~~~~~~~~~~~~~~~~~~~~~~s~~--NPiiY~~ 112 (114)
+-+|..|.+++==++|+++|+ |+..-..-...+.+..-+.+...++....-++. |-++|++
T Consensus 6 ~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~ 69 (76)
T PF11970_consen 6 RIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTL 69 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheee
Confidence 446777888888899999999 976433322222222222233333333333333 8887764
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=95.74 E-value=0.17 Score=36.31 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=40.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhh-c---cccccCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q psy4254 18 SPPLTKICDCGGVVTNYTLAYKLA-M---PIHRATPLNSAVRTAQILLMLVICFLLAWTPYA 75 (114)
Q Consensus 18 ~iPl~vi~~~y~~i~~~~~~~~~~-~---~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~ 75 (114)
.+|+.++..+...++..+++.-+. + +..++.+.++..|+.|++...++.|.++++-..
T Consensus 190 ~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~ 251 (303)
T PF05296_consen 190 FLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLI 251 (303)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999998887676664222 1 111234556778999999988888888776543
No 14
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=94.22 E-value=0.47 Score=33.65 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHH
Q psy4254 22 TKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAW 71 (114)
Q Consensus 22 ~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw 71 (114)
++...||+.+...+++.++....+.+++.++|.|.+.+..+.+..+++..
T Consensus 177 v~~iv~Y~~i~~~iRk~~k~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~ 226 (283)
T PF10323_consen 177 VICIVCYGIIFIFIRKRNKKKSKSSSRSRRREIRLAIQVFILFCAFFVIL 226 (283)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 35567787775444433221111122345566777777766666554433
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=92.70 E-value=1.8 Score=31.28 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy4254 60 LLMLVICFLLAWTPYAVITFIGQFG 84 (114)
Q Consensus 60 ~~~iv~~F~icw~P~~v~~l~~~~~ 84 (114)
+..=.++|.+||+|-.+.++.+.++
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~ 228 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIG 228 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457789999999999888887665
No 16
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=90.51 E-value=0.7 Score=32.26 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=24.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFI 80 (114)
Q Consensus 50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~ 80 (114)
.++++|+.|.+.+.++.|+.+|.=..+...+
T Consensus 179 ~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v 209 (257)
T PF10320_consen 179 SSRSKKVFKSLKVTVIIFIFSWFLSQIINTV 209 (257)
T ss_pred chhHHHHHHHhhhheeeeeHHHHHHHHHHHH
Confidence 4457899999999999999999766555444
No 17
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=90.26 E-value=1.7 Score=31.15 Aligned_cols=34 Identities=9% Similarity=0.090 Sum_probs=23.8
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4254 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQF 83 (114)
Q Consensus 50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~ 83 (114)
.++.|++.+-+.+=.++-.+|.+|-.+.......
T Consensus 232 y~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~ 265 (303)
T PF10327_consen 232 YQKHKEAVRSLIAQFATSSICILPPFIFVVVVIF 265 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhee
Confidence 4445677777777777778888998876655443
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=85.87 E-value=10 Score=26.87 Aligned_cols=62 Identities=15% Similarity=0.069 Sum_probs=32.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhcCc-Chhhhhh
Q psy4254 50 LNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKFLV-DSRIYIL 112 (114)
Q Consensus 50 ~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~~s~~-NPiiY~~ 112 (114)
++..++..|.+.+=..+=.++..|-....+...++..+ .....+........... ||+++..
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~P~itl~ 281 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE-HPFLEYLIFMLASLPPLIDPLITLY 281 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhchHhhee
Confidence 33445667777666667777778766666554443322 11111222222233333 9998643
No 19
>KOG2575|consensus
Probab=84.01 E-value=1.4 Score=33.26 Aligned_cols=25 Identities=28% Similarity=0.588 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 53 AVRTAQILLMLVICFLLAWTPYAVI 77 (114)
Q Consensus 53 ~~k~~k~~~~iv~~F~icw~P~~v~ 77 (114)
-.|..+...++++.|++||.|+...
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888899999999999998643
No 20
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=81.43 E-value=6.1 Score=28.69 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH--HH
Q psy4254 22 TKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATP--AI 99 (114)
Q Consensus 22 ~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~--~~ 99 (114)
..+..+|..+...+.+.++.. .+....++++++.--..++.+...+.+.=|..... . ..+++..... .|
T Consensus 209 ~~t~~lY~~l~~~l~~k~~~~--~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f----~---~~p~~~i~~~~~~W 279 (313)
T PF10321_consen 209 ICTTFLYIYLCYYLIKKSKYS--TSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQF----F---PPPPWLIIIGQISW 279 (313)
T ss_pred HHHHHHHHHHHHHHHHhcccc--cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeee----e---cccHHHHHHHHHHH
Confidence 356667776643343332211 12123344555555555555555554443332221 1 1233433332 35
Q ss_pred HHhcCcChhhhhh
Q psy4254 100 FAKFLVDSRIYIL 112 (114)
Q Consensus 100 ~~~s~~NPiiY~~ 112 (114)
-.++.+||+||-.
T Consensus 280 ql~~g~~~iIYl~ 292 (313)
T PF10321_consen 280 QLSHGCPPIIYLT 292 (313)
T ss_pred hccCCccceEEEE
Confidence 5666779999954
No 21
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=78.22 E-value=3 Score=29.64 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 49 PLNSAVRTAQILLMLVICFLLAWTPYAVITFIG 81 (114)
Q Consensus 49 ~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~ 81 (114)
+...|.|+++++++.|..|+..+.-..++....
T Consensus 192 r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~ 224 (265)
T PF03402_consen 192 RSSPETRATKTILLLVSTFVSFYGLSSILFIYL 224 (265)
T ss_pred CCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHH
Confidence 345789999999999999999888877765543
No 22
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=64.62 E-value=2.7 Score=29.86 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q psy4254 19 PPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLM-LVICFLLAWTPYAVITFIGQF 83 (114)
Q Consensus 19 iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~-iv~~F~icw~P~~v~~l~~~~ 83 (114)
+.+.++.+|-.++ .+..++..+..+++.++.+++..+.+.+ .++-++....|..+....-.+
T Consensus 207 ~s~~iii~cg~~~---~~~i~~~~~~~S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~ 269 (307)
T PF10326_consen 207 ISFFIIIYCGIKI---YKKIKKLSSIMSSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFF 269 (307)
T ss_pred hHHHHHHHHHhhh---HHHHhccccccChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeecc
Confidence 4566666666666 2222222222121223345666666554 344556677887766554333
No 23
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=60.42 E-value=12 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAV 76 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v 76 (114)
.-+|..+.-.+++++|++||.|+..
T Consensus 219 ~~~~~~~lg~~Vi~~f~~~~~PF~~ 243 (469)
T PF03155_consen 219 SIKRLIKLGIVVIATFALSFGPFLY 243 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999999999999999853
No 24
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=48.34 E-value=24 Score=20.36 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4254 55 RTAQILLMLVICFLLAWT 72 (114)
Q Consensus 55 k~~k~~~~iv~~F~icw~ 72 (114)
|=++..+.+.++|++.|.
T Consensus 5 rEA~~tl~l~l~yf~~W~ 22 (80)
T PF06196_consen 5 REARWTLGLTLIYFAWWY 22 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444556667777775
No 25
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=46.40 E-value=36 Score=18.49 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy4254 54 VRTAQILLMLVICFLLAW 71 (114)
Q Consensus 54 ~k~~k~~~~iv~~F~icw 71 (114)
+|...++..++++|++-|
T Consensus 36 ~~~~~i~~~~~i~~l~v~ 53 (59)
T PF09889_consen 36 RKTQYIFFGIFILFLAVW 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666655444
No 26
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=43.91 E-value=55 Score=17.86 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=12.9
Q ss_pred chhhhHHHHHHHHHHHHH-HHHHHH
Q psy4254 50 LNSAVRTAQILLMLVICF-LLAWTP 73 (114)
Q Consensus 50 ~~~~~k~~k~~~~iv~~F-~icw~P 73 (114)
.++++|...+.+.++..+ ++|-+-
T Consensus 25 ~r~RrRrc~~~v~~v~~~~~~c~~S 49 (60)
T PF06072_consen 25 SRRRRRRCRLAVAIVFAVVALCVLS 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666555555555 555543
No 27
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=42.67 E-value=1.1e+02 Score=21.19 Aligned_cols=27 Identities=15% Similarity=0.189 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAVI 77 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v~ 77 (114)
++|.+..+-...--..|.+.+.=|+..
T Consensus 203 rke~~f~~Qs~~Q~~~~~i~~~~~~~~ 229 (274)
T PF10328_consen 203 RKEIRFFIQSFIQDLLYLIDLIFYFFI 229 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666667777777655544
No 28
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=40.71 E-value=1.4e+02 Score=21.70 Aligned_cols=16 Identities=6% Similarity=0.156 Sum_probs=7.3
Q ss_pred chhhhHHHHHHHHHHH
Q psy4254 50 LNSAVRTAQILLMLVI 65 (114)
Q Consensus 50 ~~~~~k~~k~~~~iv~ 65 (114)
.++|+..+.++.+++.
T Consensus 239 ~KAE~SLT~Tmi~mli 254 (307)
T PF10322_consen 239 RKAERSLTLTMISMLI 254 (307)
T ss_pred hhhheeHHHHHHHHHH
Confidence 3344444555444443
No 29
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=40.34 E-value=1.5e+02 Score=21.79 Aligned_cols=61 Identities=20% Similarity=0.195 Sum_probs=31.2
Q ss_pred chhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHH--HHHHHhcCcChhhhhh
Q psy4254 50 LNSAVRTAQILLML-VICFLLAWTPYAVITFIGQFGDASLITPWVSAT--PAIFAKFLVDSRIYIL 112 (114)
Q Consensus 50 ~~~~~k~~k~~~~i-v~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~--~~~~~~s~~NPiiY~~ 112 (114)
++-+++..|.+.+= +.--++|+.|-.+......++- +...+..-. ...-+....||+.-.+
T Consensus 238 ~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i--~~~~~~n~~~~iAls~FPf~DPlAii~ 301 (310)
T PF10319_consen 238 KRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGI--DLGRWNNYFSVIALSAFPFLDPLAIIL 301 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcC--ChhHHHHHHHHHHHHHccccCchHhhe
Confidence 34456666666553 3344788899776654444442 223332221 1223444559975443
No 30
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=33.41 E-value=23 Score=19.67 Aligned_cols=27 Identities=15% Similarity=-0.018 Sum_probs=11.7
Q ss_pred cccCCCCCceeeeeccchHHHHHHHHH
Q psy4254 3 REKFGEGPRRRYQVRSPPLTKICDCGG 29 (114)
Q Consensus 3 ~~~~~~~~~~~~~~~~iPl~vi~~~y~ 29 (114)
|+-.|+|..++-+.-.+.+.+...+|.
T Consensus 25 R~vDgaGv~qT~~~k~itl~vl~i~~~ 51 (66)
T PF13061_consen 25 RKVDGAGVVQTPELKLITLAVLGIFFI 51 (66)
T ss_pred eeccccccccCHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 31
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=32.75 E-value=51 Score=19.50 Aligned_cols=12 Identities=25% Similarity=0.625 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q psy4254 61 LMLVICFLLAWT 72 (114)
Q Consensus 61 ~~iv~~F~icw~ 72 (114)
+++++.+++||.
T Consensus 45 il~VilwfvCC~ 56 (94)
T PF05393_consen 45 ILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHH
Confidence 445566666665
No 32
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=32.74 E-value=85 Score=22.37 Aligned_cols=15 Identities=13% Similarity=-0.168 Sum_probs=12.8
Q ss_pred ccchHHHHHHHHHHH
Q psy4254 17 RSPPLTKICDCGGVV 31 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i 31 (114)
.++|+.+...||..+
T Consensus 223 ~lLpl~~~~~~y~ll 237 (264)
T PF03613_consen 223 GLLPLLLTLLVYWLL 237 (264)
T ss_pred hHHHHHHHHHHHHHH
Confidence 468999999998877
No 33
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=29.76 E-value=62 Score=18.98 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy4254 57 AQILLMLVICFLLAWTPY 74 (114)
Q Consensus 57 ~k~~~~iv~~F~icw~P~ 74 (114)
.|.+.+.+++|++|++=|
T Consensus 67 rK~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 67 RKSMLLSVALFFVCFLVY 84 (85)
T ss_pred hhhHHHHHHHHHHHHHHc
Confidence 456777788888888744
No 34
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=28.38 E-value=1.3e+02 Score=23.19 Aligned_cols=58 Identities=7% Similarity=-0.057 Sum_probs=30.8
Q ss_pred eeccchHHHHHHHHHHHHHHHHHHhhhc-cc--cccCcchhhhHHHHHHHHHHHHHHHHHH
Q psy4254 15 QVRSPPLTKICDCGGVVTNYTLAYKLAM-PI--HRATPLNSAVRTAQILLMLVICFLLAWT 72 (114)
Q Consensus 15 ~~~~iPl~vi~~~y~~i~~~~~~~~~~~-~~--~~~~~~~~~~k~~k~~~~iv~~F~icw~ 72 (114)
....+|.++..+.+.-++..+...+|.. .. +++...++-+|+.+.-..+.+++.++|.
T Consensus 211 l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv 271 (443)
T PRK13629 211 VWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFA 271 (443)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346799999999988865555543322 10 1111122234445544455556666665
No 35
>PHA02655 hypothetical protein; Provisional
Probab=25.82 E-value=52 Score=18.65 Aligned_cols=22 Identities=5% Similarity=-0.069 Sum_probs=14.8
Q ss_pred CceeeeeccchHHHHHHHHHHH
Q psy4254 10 PRRRYQVRSPPLTKICDCGGVV 31 (114)
Q Consensus 10 ~~~~~~~~~iPl~vi~~~y~~i 31 (114)
....+.++++|+.+.+.++...
T Consensus 61 kfvvftiylipfvivmiscifl 82 (94)
T PHA02655 61 KFVVFTIYLIPFVIVMISCIFL 82 (94)
T ss_pred hheeehhhHHHHHHHHHHHHHh
Confidence 3445667889998766665544
No 36
>COG3821 Predicted membrane protein [Function unknown]
Probab=24.76 E-value=68 Score=22.16 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy4254 62 MLVICFLLAWTPYAVI 77 (114)
Q Consensus 62 ~iv~~F~icw~P~~v~ 77 (114)
+.+.+|++||+-|.-.
T Consensus 8 lA~~~F~~~W~~yt~~ 23 (234)
T COG3821 8 LALAVFLLCWLLYTPA 23 (234)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 4678899999987644
No 37
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=23.36 E-value=1.8e+02 Score=18.39 Aligned_cols=26 Identities=15% Similarity=0.260 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVI 77 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~ 77 (114)
..++.....+...++|++|++=++..
T Consensus 33 ~Hr~~Ml~a~~ls~lFlv~Yl~~~~~ 58 (133)
T PF04238_consen 33 LHRKLMLTAFVLSALFLVSYLYYHFL 58 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666777788899988876654
No 38
>KOG4220|consensus
Probab=23.06 E-value=1.1e+02 Score=23.67 Aligned_cols=20 Identities=15% Similarity=-0.147 Sum_probs=16.0
Q ss_pred cchHHHHHHHHHHHHHHHHH
Q psy4254 18 SPPLTKICDCGGVVTNYTLA 37 (114)
Q Consensus 18 ~iPl~vi~~~y~~i~~~~~~ 37 (114)
-+|..+|++.|.+|.+...+
T Consensus 203 YlPVtiM~~LY~rIyret~k 222 (503)
T KOG4220|consen 203 YLPVTIMTILYWRIYRETRK 222 (503)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 48999999999999555444
No 39
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=22.60 E-value=2.7e+02 Score=19.36 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAV 76 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v 76 (114)
+-++|..+.+..+++.+.+||.|+..
T Consensus 8 ELR~Rli~~~i~~~~~~~~~~~~~~~ 33 (237)
T TIGR01912 8 TFRLILLLVALAIVTGSVLGWLTIFT 33 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999965543
No 40
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.31 E-value=3e+02 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.470 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 57 AQILLMLVICFLLAWTPYAVITF 79 (114)
Q Consensus 57 ~k~~~~iv~~F~icw~P~~v~~l 79 (114)
.-.++.+...|+++|+-.-+..+
T Consensus 460 ~~Lm~gv~~~Flf~~~l~l~~~~ 482 (806)
T PF05478_consen 460 NFLMAGVGLSFLFSWFLMLLVLF 482 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888999976554443
No 41
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=20.06 E-value=35 Score=23.11 Aligned_cols=19 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4254 56 TAQILLMLVICFLLAWTPY 74 (114)
Q Consensus 56 ~~k~~~~iv~~F~icw~P~ 74 (114)
..+.......++.++|...
T Consensus 196 ~~~~~~~L~~llg~~w~~~ 214 (242)
T PF00002_consen 196 ILRASLILLPLLGITWLFG 214 (242)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHheee
Confidence 6677777778888888863
Done!