Query psy4254
Match_columns 114
No_of_seqs 146 out of 1080
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 20:43:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.7 1.4E-17 4.7E-22 123.7 10.0 63 51-113 402-473 (510)
2 2rh1_A Beta-2-adrenergic recep 99.7 4.8E-16 1.7E-20 114.9 10.4 60 52-112 402-463 (500)
3 3vw7_A Proteinase-activated re 99.6 8.9E-16 3E-20 112.0 5.8 63 51-113 383-451 (484)
4 3v2y_A Sphingosine 1-phosphate 99.6 4.5E-15 1.5E-19 110.4 9.4 62 52-113 415-479 (520)
5 3pbl_A D(3) dopamine receptor, 99.6 3.1E-15 1.1E-19 109.0 8.4 62 52-113 395-458 (481)
6 4eiy_A Adenosine receptor A2A/ 99.6 3.5E-15 1.2E-19 107.7 7.9 63 51-113 347-412 (447)
7 3uon_A Human M2 muscarinic ace 99.6 7.9E-15 2.7E-19 106.4 8.7 61 52-113 382-444 (467)
8 4dkl_A MU-type opioid receptor 99.6 3.6E-15 1.2E-19 108.0 6.4 63 51-113 376-442 (464)
9 3eml_A Human adenosine A2A rec 99.6 6.9E-15 2.3E-19 107.1 7.4 63 51-113 388-453 (488)
10 2lnl_A C-X-C chemokine recepto 99.5 4.7E-14 1.6E-18 97.5 9.1 86 18-113 184-280 (296)
11 3rze_A Histamine H1 receptor, 99.5 1.1E-14 3.9E-19 105.2 6.0 61 52-113 367-429 (452)
12 1u19_A Rhodopsin; G protein-co 99.5 5.4E-15 1.8E-19 103.6 4.1 94 17-113 213-310 (349)
13 3odu_A C-X-C chemokine recepto 99.5 7.6E-15 2.6E-19 107.5 4.9 62 52-113 407-479 (502)
14 4amj_A Beta-1 adrenergic recep 99.5 1.8E-13 6.2E-18 94.3 9.5 94 17-111 186-286 (315)
15 2ks9_A Substance-P receptor; w 99.5 8.2E-14 2.8E-18 98.4 6.6 97 17-113 205-308 (364)
16 2z73_A Rhodopsin; visual pigme 99.4 2.3E-13 7.8E-18 98.9 8.1 97 17-113 209-318 (448)
17 3sn6_R Lysozyme, beta-2 adrene 99.4 4.7E-13 1.6E-17 99.1 9.2 94 17-111 357-476 (514)
18 4ea3_A Fusion protein of nocic 99.4 2.8E-13 9.5E-18 98.4 7.0 94 17-113 298-396 (434)
19 2ki9_A Cannabinoid receptor 2; 98.9 5.2E-11 1.8E-15 57.4 -1.8 29 53-81 1-29 (33)
20 2koe_A Human cannabinoid recep 96.4 0.0015 5.2E-08 31.6 1.7 15 99-113 10-24 (40)
21 1s6c_B Potassium voltage-gated 21.7 32 0.0011 15.4 0.7 9 66-74 3-11 (30)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.73 E-value=1.4e-17 Score=123.70 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch-------HHHHHHHHHH--hcCcChhhhhhc
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP-------WVSATPAIFA--KFLVDSRIYILV 113 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~-------~~~~~~~~~~--~s~~NPiiY~~~ 113 (114)
++++|++||+.+++++|++||+||+++.++..+.+...... +...++.|++ ||++||+||+++
T Consensus 402 ~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~ 473 (510)
T 4grv_A 402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473 (510)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999887765443322 2234455554 555599999975
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.66 E-value=4.8e-16 Score=114.90 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--hcCcChhhhhh
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFA--KFLVDSRIYIL 112 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~~--~s~~NPiiY~~ 112 (114)
+++|++|++++++++|++||+||+++.++..+.+. ........+..|++ ||++||+||++
T Consensus 402 ~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~-~~~~~~~~~~~~L~y~NS~iNPiIY~~ 463 (500)
T 2rh1_A 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-LIRKEVYILLNWIGYVNSGFNPLIYCR 463 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-SSCHHHHHHHHHHHHHGGGTHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhhcchhhhc
Confidence 56899999999999999999999999998887643 34455555555554 55559999975
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.60 E-value=8.9e-16 Score=111.98 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=45.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHHhcC--cChhhhhhc
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLIT----PWVSATPAIFAKFL--VDSRIYILV 113 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~----~~~~~~~~~~~~s~--~NPiiY~~~ 113 (114)
++++|++||+++++++|++||+||+++.++..+....... .....++.+++.+| .||+||+++
T Consensus 383 ~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~ 451 (484)
T 3vw7_A 383 SKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYA 451 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHh
Confidence 3457999999999999999999999999987654322211 12233445555544 499999985
No 4
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.59 E-value=4.5e-15 Score=110.36 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchHHHHHH--HHHHhcCcChhhhhhc
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL-ITPWVSATP--AIFAKFLVDSRIYILV 113 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~-~~~~~~~~~--~~~~~s~~NPiiY~~~ 113 (114)
+++|++|++++++++|++||+||++..++..+.+... .......+. ..+.||+.||+||++.
T Consensus 415 ~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~ 479 (520)
T 3v2y_A 415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLT 479 (520)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4788999999999999999999999999877654321 112222223 3455666699999975
No 5
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=109.01 Aligned_cols=62 Identities=11% Similarity=0.360 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
+++|++|++++++++|++||+|+++..++..+.+..........+..++ .++++||+||+++
T Consensus 395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~ 458 (481)
T 3pbl_A 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTF 458 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHc
Confidence 4789999999999999999999999999887655444445445444444 4555599999975
No 6
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.58 E-value=3.5e-15 Score=107.73 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDA-SLITPWVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
++++|++|++++++++|++||+|+++..++..+.+. .....+...++.++ .|++.||+||+++
T Consensus 347 ~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~ 412 (447)
T 4eiy_A 347 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYR 412 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhc
Confidence 356789999999999999999999999988877543 22334444444444 4555599999975
No 7
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.57 E-value=7.9e-15 Score=106.40 Aligned_cols=61 Identities=20% Similarity=0.451 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
+++|++|++++++++|++||+|++++.++..+.+. ........+..++ .+++.||+||+++
T Consensus 382 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~-~~~~~~~~i~~~L~~~ns~~NPiIY~~~ 444 (467)
T 3uon_A 382 REKKVTRTILAILLAFIITWAPYNVMVLINTFCAP-CIPNTVWTIGYWLCYINSTINPACYALC 444 (467)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST-TSCHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHhhhhhhHHHHHc
Confidence 56899999999999999999999999998887653 2334444445444 4455599999975
No 8
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.56 E-value=3.6e-15 Score=107.99 Aligned_cols=63 Identities=14% Similarity=0.311 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchHHHHHHHH--HHhcCcChhhhhhc
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASL--ITPWVSATPAI--FAKFLVDSRIYILV 113 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~--~~~~~~~~~~~--~~~s~~NPiiY~~~ 113 (114)
++++|++|++++++++|++||+|+++..++..+..... .......++.+ +.||+.||+||+++
T Consensus 376 ~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~ 442 (464)
T 4dkl_A 376 RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFL 442 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHh
Confidence 45689999999999999999999999999887654222 22223334434 44555699999975
No 9
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.56 E-value=6.9e-15 Score=107.12 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH--HhcCcChhhhhhc
Q psy4254 51 NSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDAS-LITPWVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 51 ~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~-~~~~~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
++++|++|++++++++|++||+|++++.++..+.+.. ........++.++ .+++.||+||+++
T Consensus 388 ~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~ 453 (488)
T 3eml_A 388 QKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYR 453 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhc
Confidence 3578999999999999999999999999988776432 2334344444444 4555599999975
No 10
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.53 E-value=4.7e-14 Score=97.48 Aligned_cols=86 Identities=19% Similarity=0.416 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch------
Q psy4254 18 SPPLTKICDCGGVVTNYTLAYKLAMPIHRATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP------ 91 (114)
Q Consensus 18 ~iPl~vi~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~------ 91 (114)
.+|+.++.++|.++. + + .++ ...++++|+.|++.+++++|++||+|+++..+...+.+....+.
T Consensus 184 ~~p~~i~~~~y~~i~---~---~---~~~-~~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~ 253 (296)
T 2lnl_A 184 IVPLFVMLFCYGFTL---R---T---LFK-AHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRN 253 (296)
T ss_dssp HHHHHHHHHHHHHHT---T---T---SSS-CCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHH---H---H---HHH-HhhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhh
Confidence 578999999998882 1 1 111 23456789999999999999999999999999877654322111
Q ss_pred ---HHHHHHHHHHhcC--cChhhhhhc
Q psy4254 92 ---WVSATPAIFAKFL--VDSRIYILV 113 (114)
Q Consensus 92 ---~~~~~~~~~~~s~--~NPiiY~~~ 113 (114)
.....+.+++.+| .||+||++.
T Consensus 254 ~~~~~~~~~~~l~~~ns~~NPiIY~~~ 280 (296)
T 2lnl_A 254 NIGRALDATEILGFLHSCLNPIIYAFI 280 (296)
T ss_dssp HTTHHHHHHHHHGGGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1223445555544 499999975
No 11
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=105.18 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHH--HHHHhcCcChhhhhhc
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATP--AIFAKFLVDSRIYILV 113 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~--~~~~~s~~NPiiY~~~ 113 (114)
+++|++|++++++++|++||+|+++..++..+.+... ......+. +.+.+++.||+||++.
T Consensus 367 ~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~-~~~~~~~~~~L~~~ns~~NPiIY~~~ 429 (452)
T 3rze_A 367 RERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-NEHLHMFTIWLGYINSTLNPLIYPLC 429 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHhcccchhhhhc
Confidence 5789999999999999999999999999877654322 22223333 3445666699999975
No 12
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.52 E-value=5.4e-15 Score=103.57 Aligned_cols=94 Identities=29% Similarity=0.458 Sum_probs=64.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhcccc--ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIH--RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVS 94 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~--~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~ 94 (114)
+.+|++++.+||.+|. +..++..+.. ++++.++++|++|++.+++++|++||+|+++..++....+.........
T Consensus 213 ~~ip~~ii~~~y~~i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~ 289 (349)
T 1u19_A 213 FIIPLIVIFFCYGQLV---FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFM 289 (349)
T ss_dssp THHHHHHHHHHHTTTT---TSSCSCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHH
Confidence 4689999999999994 3332222111 1122345678999999999999999999999888776654444444444
Q ss_pred HHHHHHH--hcCcChhhhhhc
Q psy4254 95 ATPAIFA--KFLVDSRIYILV 113 (114)
Q Consensus 95 ~~~~~~~--~s~~NPiiY~~~ 113 (114)
.+..+++ +++.||+||++.
T Consensus 290 ~~~~~l~~~ns~~nPiiY~~~ 310 (349)
T 1u19_A 290 TIPAFFAKTSAVYNPVIYIMM 310 (349)
T ss_dssp HHHHHHGGGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHH
Confidence 4444554 444499999975
No 13
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.52 E-value=7.6e-15 Score=107.47 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------C---cchHHHHHHHHHHhc--CcChhhhhhc
Q psy4254 52 SAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDAS------L---ITPWVSATPAIFAKF--LVDSRIYILV 113 (114)
Q Consensus 52 ~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~------~---~~~~~~~~~~~~~~s--~~NPiiY~~~ 113 (114)
+++|++|++++++++|++||+|++++.++..+.... . .......++.+++.. ++||+||++.
T Consensus 407 ~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~ 479 (502)
T 3odu_A 407 QKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFL 479 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhc
Confidence 468999999999999999999999998887653111 0 111222344455544 4499999985
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.49 E-value=1.8e-13 Score=94.31 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=62.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhcc-ccccC----cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMP-IHRAT----PLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP 91 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~-~~~~~----~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~ 91 (114)
+.+|++++.++|.++.+.+++.++..+ .++++ ..++++|+++++.+++++|++||+|+++..++..+++.. .+.
T Consensus 186 ~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~ 264 (315)
T 4amj_A 186 FYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPD 264 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-SCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chH
Confidence 468999999999999655543221111 11101 123568999999999999999999999999887765432 333
Q ss_pred HHHHHHHH--HHhcCcChhhhh
Q psy4254 92 WVSATPAI--FAKFLVDSRIYI 111 (114)
Q Consensus 92 ~~~~~~~~--~~~s~~NPiiY~ 111 (114)
.......+ ..+++.||++|+
T Consensus 265 ~~~~~~~~l~~~ns~~nPiiY~ 286 (315)
T 4amj_A 265 WLFVAFNWLGYANSAMNPIIYC 286 (315)
T ss_dssp HHHHHHHHHHHHGGGTHHHHGG
T ss_pred HHHHHHHHHHHHhccccHHHHc
Confidence 33444433 456666999997
No 15
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.46 E-value=8.2e-14 Score=98.40 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=63.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhcccc--ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---Ccch
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIH--RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDAS---LITP 91 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~--~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~---~~~~ 91 (114)
+.+|++++.+||.+|.+.+++.++..+.. ++++.++++|++|++.+++++|++||+|+++..++..+.+.. ....
T Consensus 205 ~~lp~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~ 284 (364)
T 2ks9_A 205 YFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQ 284 (364)
T ss_dssp THHHHHHHHHHHHHHHHSSCSCCCSSSSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHH
Confidence 46899999999999953333211111111 111234568999999999999999999999998887665432 1122
Q ss_pred HHHHHHHHH--HhcCcChhhhhhc
Q psy4254 92 WVSATPAIF--AKFLVDSRIYILV 113 (114)
Q Consensus 92 ~~~~~~~~~--~~s~~NPiiY~~~ 113 (114)
.......++ .+++.||+||++.
T Consensus 285 ~~~~~~~~l~~~ns~~NPiiY~~~ 308 (364)
T 2ks9_A 285 QVYLAIMWLAMSSTMYNPIIYCCL 308 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333 4555599999974
No 16
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.45 E-value=2.3e-13 Score=98.89 Aligned_cols=97 Identities=27% Similarity=0.438 Sum_probs=65.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhc-----ccccc------CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAM-----PIHRA------TPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGD 85 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~-----~~~~~------~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~ 85 (114)
+++|++++++||.+|.+.+++.++.. +...+ ...++++|++|++++++++|++||+|+++..++..++.
T Consensus 209 ~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~ 288 (448)
T 2z73_A 209 FFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGP 288 (448)
T ss_dssp THHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence 46899999999999976665432211 00000 01234678999999999999999999999998877654
Q ss_pred CCCcchHHHHHHH--HHHhcCcChhhhhhc
Q psy4254 86 ASLITPWVSATPA--IFAKFLVDSRIYILV 113 (114)
Q Consensus 86 ~~~~~~~~~~~~~--~~~~s~~NPiiY~~~ 113 (114)
..........+.. ...++++||+||++.
T Consensus 289 ~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~ 318 (448)
T 2z73_A 289 LEWVTPYAAQLPVMFAKASAIHNPMIYSVS 318 (448)
T ss_dssp GGGCCHHHHHHHHHHHHHGGGSHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHhhcchHHHHh
Confidence 3323333333333 345666699999874
No 17
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.44 E-value=4.7e-13 Score=99.10 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=63.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhccc-c-----------------------ccCcchhhhHHHHHHHHHHHHHHHHHH
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPI-H-----------------------RATPLNSAVRTAQILLMLVICFLLAWT 72 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~-~-----------------------~~~~~~~~~k~~k~~~~iv~~F~icw~ 72 (114)
+.+|++++++||.+|.+.+++..+..+. . .+...++++|+++++++++++|++||+
T Consensus 357 ~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~~iv~~F~lcwl 436 (514)
T 3sn6_R 357 FYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWL 436 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999997666553211000 0 001123568999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHH--HhcCcChhhhh
Q psy4254 73 PYAVITFIGQFGDASLITPWVSATPAIF--AKFLVDSRIYI 111 (114)
Q Consensus 73 P~~v~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~NPiiY~ 111 (114)
|+++..++..+.+. ........+..++ .+++.||+||+
T Consensus 437 P~~i~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~ 476 (514)
T 3sn6_R 437 PFFIVNIVHVIQDN-LIRKEVYILLNWIGYVNSGFNPLIYC 476 (514)
T ss_dssp HHHHHHHHHHHSTT-SSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHhhhHHhhc
Confidence 99999988776543 3334444444444 45555999997
No 18
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=98.37 Aligned_cols=94 Identities=14% Similarity=0.205 Sum_probs=62.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhcccc-ccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch--HH
Q psy4254 17 RSPPLTKICDCGGVVTNYTLAYKLAMPIH-RATPLNSAVRTAQILLMLVICFLLAWTPYAVITFIGQFGDASLITP--WV 93 (114)
Q Consensus 17 ~~iPl~vi~~~y~~i~~~~~~~~~~~~~~-~~~~~~~~~k~~k~~~~iv~~F~icw~P~~v~~l~~~~~~~~~~~~--~~ 93 (114)
+.+|++++++||.+|.+.+ ++..... ++++.++++|+.+++++++++|++||+|+++..++..+........ ..
T Consensus 298 ~~ip~~ii~~~y~~I~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~ 374 (434)
T 4ea3_A 298 FIVPVLVISVCYSLMIRRL---RGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAI 374 (434)
T ss_dssp THHHHHHHHHHHHHHHHHH---TTCSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---hhccccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence 4689999999999995433 3222111 1123445689999999999999999999999988876543322211 12
Q ss_pred HHHHH--HHHhcCcChhhhhhc
Q psy4254 94 SATPA--IFAKFLVDSRIYILV 113 (114)
Q Consensus 94 ~~~~~--~~~~s~~NPiiY~~~ 113 (114)
..++. .+.+++.||+||++.
T Consensus 375 ~~~~~~l~~~ns~lNPiIY~~~ 396 (434)
T 4ea3_A 375 LRFCTALGYVNSCLNPILYAFL 396 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 22232 345566699999974
No 19
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.89 E-value=5.2e-11 Score=57.38 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4254 53 AVRTAQILLMLVICFLLAWTPYAVITFIG 81 (114)
Q Consensus 53 ~~k~~k~~~~iv~~F~icw~P~~v~~l~~ 81 (114)
++|+.|++.+++++|++||+||++..++.
T Consensus 1 e~k~~k~l~~vv~~F~icW~P~~i~~~~~ 29 (33)
T 2ki9_A 1 DVRLAKTLGLVLAVLLICWFPVLALMAHS 29 (33)
T ss_dssp CCSSSSHHHHHHHHHTTTSSHHHHHHTTT
T ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence 35788999999999999999999987654
No 20
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=96.39 E-value=0.0015 Score=31.62 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=11.0
Q ss_pred HHHhcCcChhhhhhc
Q psy4254 99 IFAKFLVDSRIYILV 113 (114)
Q Consensus 99 ~~~~s~~NPiiY~~~ 113 (114)
...+|+.||+||++.
T Consensus 10 ~~~ns~lNPiIY~~~ 24 (40)
T 2koe_A 10 CLLNSTVNPIIYALR 24 (40)
T ss_dssp HHHHHHSSTTTTBTT
T ss_pred HHHHHHHHHHHHHHc
Confidence 345566699999874
No 21
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=21.73 E-value=32 Score=15.38 Aligned_cols=9 Identities=33% Similarity=0.885 Sum_probs=7.2
Q ss_pred HHHHHHHHH
Q psy4254 66 CFLLAWTPY 74 (114)
Q Consensus 66 ~F~icw~P~ 74 (114)
.++-||+|+
T Consensus 3 a~v~~w~~f 11 (30)
T 1s6c_B 3 AGVAAWLPF 11 (30)
T ss_dssp HHHHTTHHH
T ss_pred hhhhhhccc
Confidence 467899997
Done!