RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4254
         (114 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 30.7 bits (68), Expect = 0.025
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 56  TAQILLMLVICFLLAWTPYAVITFIGQFGDASLITPWVSATPAIFAKF 103
             ++++++VI FL+ W PYA + F       S   P     PA FAK 
Sbjct: 250 VTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKT 297


>d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase
          {Haemophilus influenzae [TaxId: 727]}
          Length = 357

 Score = 23.6 bits (50), Expect = 6.9
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 26 DCGGVVTNYTLAYK 39
            GG ++   +AY+
Sbjct: 16 MLGGKLSYINVAYQ 29


>d2pw9a1 c.97.1.5 (A:7-257) Uncharacterized protein DP1777
           {Desulfotalea psychrophila [TaxId: 84980]}
          Length = 251

 Score = 23.5 bits (50), Expect = 9.0
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 21  LTKICDCGGVVT----NYTLAYKLAM---PI--HRATPLNSAVRTAQILLMLVICFL 68
           L +  +   V T       +  K A    PI   R +P +  +  A+     ++ + 
Sbjct: 180 LGRASNNSAVYTTGRLTSDMVLKCARIGIPIIMSRTSPSSLGLALAKRSGATLVAYS 236


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.143    0.450 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,271
Number of extensions: 15570
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 5
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.3 bits)