BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4257
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 125/283 (44%), Gaps = 49/283 (17%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIR 140
N I+ +R+D+F+ L +L ++ L NN+I+ ++ + S L KL LY+S N L E +
Sbjct: 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS 123
Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN-------LDG---- 189
L LR D N+I K K G+ N+ +++ N +EN DG
Sbjct: 124 SLVELRIHD---NRIRKVP-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLN 175
Query: 190 -------ALMGI-----HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L GI L+ L L HNK++ I +D + L L + HN + +E
Sbjct: 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI-FGL 296
S +FLP L EL + +N L+R+ L +L L NNI + + C + FG+
Sbjct: 236 SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN----DFCPVGFGV 291
Query: 297 NSTLRIYLEG-----NPV----LCDDSMRAVIDAMETINNNTK 330
R Y G NPV + + R V D + N K
Sbjct: 292 K---RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQL--LVIEQNQLEALPSDIQLFSQLGSLYANN 58
GL ++N + + N L++ + G L+L L I + +L +P D+ L L+ ++
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDH 202
Query: 59 NRITS--LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
N+I + L+ LLR +KL + NQI M+ L L + L NN+++ + + L
Sbjct: 203 NKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIR----GLKRLRTVDLSYNKINKF 158
L L +YL N +T+ ++D G+KR YN I+ F
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR-----AYYNGISLF 302
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 41/232 (17%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL L L L NN++ + E L KLQ L I +N L +P ++ S L L ++N
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDN 133
Query: 60 RITSLD-GLLRGLTKLQVFNMDFNQI--TMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
RI + G+ GL + M N + + F L L+ + + ++T + L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP 192
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L L+L HN++ L+D+ L Y+K+ + G G NQ++ + N
Sbjct: 193 --ETLNELHLDHNKIQAIELEDL----------LRYSKLYRLGL---GHNQIRMIEN--- 234
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
G+L + L L L +NKL + GL LK+L + +
Sbjct: 235 ------------GSLSFLPTLRELHLDNNKLSRVP----AGLPDLKLLQVVY 270
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 131/286 (45%), Gaps = 23/286 (8%)
Query: 31 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
+V + L +P I ++ +L NN ++ D R L L+V + N I +
Sbjct: 59 VVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVG 117
Query: 91 EFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLR 146
F L +L+++ L +N +T + S + L+KL L+L +N + + + + L RL
Sbjct: 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL- 176
Query: 147 TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 206
DL ++ K +EG +G+ N+ L L I+++ L + GL L++S N
Sbjct: 177 --DLG--ELKKLEYISEGA--FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH 229
Query: 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGL 265
I P F GL SLK L + ++ ++ +E + L +L EL ++HN+L+ L D F L
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289
Query: 266 PVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
L + L HN C I L LR Y+ N C
Sbjct: 290 RYLVELHLHHN---------PWNCDCDILWLAWWLREYIPTNSTCC 326
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL LN L L +N L + G LSKL+ L + N +E++PS YA N
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-----------YA-FN 168
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
R+ SL L G + ++ + F+ L NL ++L I M +L+ L
Sbjct: 169 RVPSLMRLDLG---------ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLV 218
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L L +S N E GL L+ + + ++++ +N G+ ++ EL L
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-----ERNAFDGLASLVELNL 273
Query: 180 QHNEIENLDGALM-GIHGLSRLDLSHNK 206
HN + +L L + L L L HN
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNP 301
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Query: 31 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
++ + +L +P+ I + ++ +L N+ ++ D + L L++ + N + +
Sbjct: 19 VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTF-KHLRHLEILQLSKNLVRKIEVG 77
Query: 91 EFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149
F L +L+++ L +N++T++ + + L+KL L+L +N + + LR +D
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 150 LSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209
L ++ + +E +G+ N+ L L ++++ L + L L+LS N+L
Sbjct: 138 LG--ELKRLEYISEAA--FEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDL 192
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVL 268
I P F GL SL+ L + H + T+E + L +LEEL +SHN+L L D F L L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 269 CKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
+ L HN C + L+ L+ + N C
Sbjct: 253 ERVHLNHN---------PWHCNCDVLWLSWWLKETVPSNTTCC 286
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL LN L L +NRL ++ Q LSKL+ L + N +E++PS YA
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS-----------YA--- 126
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
FN++ +RR + L L+ IS ++ GL
Sbjct: 127 ---------------------FNRVPSLRRLDLGELKRLEYIS---------EAAFEGLV 156
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L YL L L + + ++ L RL ++LS N+++ QG+T++ +L L
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLI-----RPGSFQGLTSLRKLWL 209
Query: 180 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
H ++ ++ A + L L+LSHN L ++ D F L L+ + ++HN
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 133/283 (46%), Gaps = 17/283 (6%)
Query: 31 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
++ + +L +P+ I + ++ +L N+ ++ D + L L++ + N + +
Sbjct: 19 VICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTF-KHLRHLEILQLSKNLVRKIEVG 77
Query: 91 EFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149
F L +L+++ L +N++T++ + + L+KL L+L +N + + LR +D
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 150 LSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209
L ++ + +E +G+ N+ L L ++++ L + L L+LS N+L
Sbjct: 138 LG--ELKRLEYISEAA--FEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDL 192
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVL 268
I P F GL SL+ L + H + T+E + L +LEEL +SHN+L L D F L L
Sbjct: 193 IRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 269 CKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
+ L HN C + L+ L+ + N C
Sbjct: 253 ERVHLNHN---------PWHCNCDVLWLSWWLKETVPSNTTCC 286
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 53/231 (22%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL LN L L +NRL ++ Q LSKL+ L + N +E++PS YA
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPS-----------YA--- 126
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
FN++ +RR + L L+ IS ++ GL
Sbjct: 127 ---------------------FNRVPSLRRLDLGELKRLEYIS---------EAAFEGLV 156
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L YL L L + + ++ L RL ++LS N+++ QG+T++ +L L
Sbjct: 157 NLRYLNLGMCNLKD--IPNLTALVRLEELELSGNRLDLI-----RPGSFQGLTSLRKLWL 209
Query: 180 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
H ++ ++ A + L L+LSHN L ++ D F L L+ + ++HN
Sbjct: 210 MHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 33/284 (11%)
Query: 15 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLT 72
+KS++G + L+ L + NQL + + ++ ++L + NNN+I + L L LT
Sbjct: 53 IKSIDG-VEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
L +FN NQIT + D +NL NL+ + L +N I+ + S+LSGLT L L S NQ+T
Sbjct: 111 GLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVT 164
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNE---------GKNQVQGV------TNIFEL 177
+ L + L L +D+S NK++ + NQ+ + TN+ EL
Sbjct: 165 D--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N+++++ G L + L+ LDL++N++ ++P GL L L + N ++ +
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+ L AL L ++ N L + L L L NNI I
Sbjct: 280 AG--LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 320
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 27/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 94 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L S N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 145 -SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 199
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 200 LIATNNQIS----DITPLGILTNLD 220
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 40/218 (18%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 216 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 112
+++ L GLT L N++ N+ + NL NL ++L N I+ ++
Sbjct: 274 SNISPL-AGLTALT--NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 113 ------------SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
SSL+ LT + +L HNQ+++ L + L R+ + L N
Sbjct: 331 RLFFSNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGL-----NDQAW 383
Query: 161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLS 198
N N V+ N ++N+ GAL+ +S
Sbjct: 384 TNAPVNYKANVS-------IPNTVKNVTGALIAPATIS 414
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 33/300 (11%)
Query: 15 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLT 72
+KS++G + L+ L + NQL + + ++ ++L + NNN+I + L L LT
Sbjct: 53 IKSIDG-VEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
L +FN NQIT + D +NL NL+ + L +N I+ + S+LSGLT L L S NQ+T
Sbjct: 111 GLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVT 164
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNE---------GKNQVQGV------TNIFEL 177
+ L + L L +D+S NK++ + NQ+ + TN+ EL
Sbjct: 165 D--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N+++++ G L + L+ LDL++N++ ++P GL L L + N ++ +
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
+ L AL L ++ N L + L L L NNI I+ +L ++F N
Sbjct: 280 AG--LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 336
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 27/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 94 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L S N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 145 -SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 199
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 200 LIATNNQIS----DITPLGILTNLD 220
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 40/218 (18%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 216 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 112
+++ L GLT L N++ N+ + NL NL ++L N I+ ++
Sbjct: 274 SNISPL-AGLTALT--NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 113 ------------SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
SSL+ LT + +L HNQ+++ L + L R+ + L N
Sbjct: 331 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGL-----NDQAW 383
Query: 161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLS 198
N N V+ N ++N+ GAL+ +S
Sbjct: 384 TNAPVNYKANVS-------IPNTVKNVTGALIAPATIS 414
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 141/284 (49%), Gaps = 33/284 (11%)
Query: 15 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLT 72
+KS++G + L+ L + NQL + + ++ ++L + NNN+I + L L LT
Sbjct: 53 IKSIDG-VEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLT 110
Query: 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
L +FN NQIT + D +NL NL+ + L +N I+ + S+LSGLT L L S NQ+T
Sbjct: 111 GLTLFN---NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVT 164
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNE---------GKNQVQGV------TNIFEL 177
+ L + L L +D+S NK++ + NQ+ + TN+ EL
Sbjct: 165 D--LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 222
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N+++++ G L + L+ LDL++N++ ++P GL L L + N ++ +
Sbjct: 223 SLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL 279
Query: 238 SKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+ L AL L ++ N L + L L L NNI I
Sbjct: 280 AG--LTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 320
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 101/205 (49%), Gaps = 27/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 94 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L+ S N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 145 -SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 199
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 200 LIATNNQIS----DITPLGILTNLD 220
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 40/218 (18%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 216 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 112
+++ L GLT L N++ N+ + NL NL ++L N I+ ++
Sbjct: 274 SNISPL-AGLTALT--NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 113 ------------SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
SSL+ LT + +L HNQ+++ L + L R+ + L N
Sbjct: 331 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGL-----NDQAW 383
Query: 161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLS 198
N N V+ N ++N+ GAL+ +S
Sbjct: 384 TNAPVNYKANVS-------IPNTVKNVTGALIAPATIS 414
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 144/298 (48%), Gaps = 27/298 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN--N 59
LT+L L L NN++ ++ L L+ L L + N + SDI S L SL N N
Sbjct: 106 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFGN 160
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
++T L L LT L+ ++ N+++ + L NL+S+ NNQI+ + + L LT
Sbjct: 161 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 216
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L L L+ NQL + + + L L +DL+ N+I+ + G+T + ELKL
Sbjct: 217 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 267
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
N+I N+ L G+ L+ L+L+ N+L ISP L +L L + N ++ + S
Sbjct: 268 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 324
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
L L+ LF S+N ++ + L + HN I + LA T+ GLN
Sbjct: 325 --LTKLQRLFFSNNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLN 378
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 94 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L+ N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 145 -SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 198
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 199 LIATNNQIS----DITPLGILTNLD 219
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF------ 134
N+IT ++ +F+NL NL ++ L NN+I+ ++ + + L KL LYLS NQL E
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 135 LLDDIR---------------GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L ++R GL ++ V+L N + G N QG+ + +++
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRI 178
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
I + L L+ L L NK+ + GL++L L +S N ++ ++ S
Sbjct: 179 ADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
P L EL +++N L ++ + L +NNI AI
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 13/218 (5%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L +L+ L L NN++ + G L KL+ L + +NQL+ LP ++ L L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENE 132
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQI--TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
IT + + GL ++ V + N + + + FQ + L I + + IT++ L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP- 191
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L+L N++T+ ++GL L + LS+N I+ + ++ EL
Sbjct: 192 -PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLREL 245
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
L +N++ + G L + + L +N + I +DF
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG 170
A L L +N++TE D + LK L T+ L NKI+K KNQ++
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 171 VT-----NIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRT--ISPDDFIGLDSLK 222
+ + EL++ NEI + ++ G++ + ++L N L++ I F G+ L
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAI 281
+ I+ +TT+ + P+L EL + N +T++D GL L K L+ N+I A+
Sbjct: 175 YIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 282 -NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD 340
N LA + LN+ + + G L D V+ NN + I C P
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHN--NNISAIGSNDFCPPG 287
Query: 341 SN 342
N
Sbjct: 288 YN 289
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 1 GLTDLNWLFLNNNRLKSL---EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 57
GL + + L N LKS G + KL + I + +P L L L+ +
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLD 200
Query: 58 NNRITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
N+IT +D L+GL L + FN I+ V N +L + L NN++ + L+
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260
Query: 117 GLTKLAYLYLSHNQLTEFLLDDI 139
+ +YL +N ++ +D
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 27/222 (12%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF------ 134
N+IT ++ +F+NL NL ++ L NN+I+ ++ + + L KL LYLS NQL E
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 135 LLDDIR---------------GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L ++R GL ++ V+L N + G N QG+ + +++
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---GAFQGMKKLSYIRI 178
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
I + L L+ L L NK+ + GL++L L +S N ++ ++ S
Sbjct: 179 ADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
P L EL +++N L ++ + L +NNI AI
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 101/218 (46%), Gaps = 13/218 (5%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L +L+ L L NN++ + G L KL+ L + +NQL+ LP ++ L L + N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENE 132
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQI--TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
IT + + GL ++ V + N + + + FQ + L I + + IT++ L
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP- 191
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L+L N++T+ ++GL L + LS+N I+ + ++ EL
Sbjct: 192 -PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLREL 245
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
L +N++ + G L + + L +N + I +DF
Sbjct: 246 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG 170
A L L +N++TE D + LK L T+ L NKI+K KNQ++
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE 114
Query: 171 VT-----NIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRT--ISPDDFIGLDSLK 222
+ + EL++ NEI + ++ G++ + ++L N L++ I F G+ L
Sbjct: 115 LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAI 281
+ I+ +TT+ + P+L EL + N +T++D GL L K L+ N+I A+
Sbjct: 175 YIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 282 -NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD 340
N LA + LN+ + + G L D V+ NN + I C P
Sbjct: 232 DNGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHN--NNISAIGSNDFCPPG 287
Query: 341 SN 342
N
Sbjct: 288 YN 289
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 1 GLTDLNWLFLNNNRLKSL---EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 57
GL + + L N LKS G + KL + I + +P L L L+ +
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLD 200
Query: 58 NNRITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
N+IT +D L+GL L + FN I+ V N +L + L NN++ + L+
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 260
Query: 117 GLTKLAYLYLSHNQLTEFLLDDI 139
+ +YL +N ++ +D
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDF 283
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 144/298 (48%), Gaps = 27/298 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL--YANNN 59
LT+L L L NN++ ++ L L+ L L + N + SDI S L SL + N
Sbjct: 110 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFGN 164
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
++T L L LT L+ ++ N+++ + L NL+S+ NNQI+ + + L LT
Sbjct: 165 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 220
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L L L+ NQL + + + L L +DL+ N+I+ + G+T + ELKL
Sbjct: 221 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 271
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
N+I N+ L G+ L+ L+L+ N+L ISP L +L L + N ++ + S
Sbjct: 272 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 328
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
L L+ LF ++N ++ + L + HN I + LA T+ GLN
Sbjct: 329 --LTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLN 382
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 39 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 97
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 98 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 148
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 149 -SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 202
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 203 LIATNNQIS----DITPLGILTNLD 223
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 143/298 (47%), Gaps = 27/298 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN--N 59
LT+L L L NN++ ++ L L+ L L + N + SDI S L SL N N
Sbjct: 106 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFGN 160
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
++T L L LT L+ ++ N+++ + L NL+S+ NNQI+ + + L LT
Sbjct: 161 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 216
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L L L+ NQL + + + L L +DL+ N+I+ + G+T + ELKL
Sbjct: 217 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 267
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
N+I N+ L G+ L+ L+L+ N+L ISP L +L L + N ++ + S
Sbjct: 268 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 324
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
L L+ LF +N ++ + L + HN I + LA T+ GLN
Sbjct: 325 --LTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLN 378
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 28/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 94 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L+ N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 145 -SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 198
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 199 LIATNNQIS----DITPLGILTNLD 219
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 129/257 (50%), Gaps = 25/257 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL--YANNN 59
LT+L L L NN++ ++ L L+ L L + N + SDI S L SL + N
Sbjct: 111 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFGN 165
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
++T L L LT L+ ++ N+++ + L NL+S+ NNQI+ + + L LT
Sbjct: 166 QVTDLKPL-ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDI-TPLGILT 221
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L L L+ NQL + + + L L +DL+ N+I+ + G+T + ELKL
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA-------PLSGLTKLTELKL 272
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
N+I N+ L G+ L+ L+L+ N+L ISP L +L L + N ++ + S
Sbjct: 273 GANQISNI-SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS 329
Query: 240 TFLPALEELFVSHNSLT 256
L L+ LF +N ++
Sbjct: 330 --LTKLQRLFFYNNKVS 344
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 76 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 40 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 98
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+NQ+ + + + L L + L N+I + ++ +TN+ L+L N I ++
Sbjct: 99 NNQIAD--ITPLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTISDI 149
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
AL G+ L +L N++ + P L +L+ LDIS N ++ + +K L LE
Sbjct: 150 -SALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDISVLAK--LTNLES 203
Query: 248 LFVSHNSLTRLDKDFHGLPVLCKAD 272
L ++N ++ D L +L D
Sbjct: 204 LIATNNQIS----DITPLGILTNLD 224
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
GLT L WL L+ N+L++L G L++L L + NQL +LP + +QL LY
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
N++ SL G+ LTKL+ ++ NQ+ + F L NL ++SL NQ+ S+ + +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 117 GLTKLAYLYLSHNQL 131
L KL + L NQ
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAY 123
D RGLTKL N+D+NQ+ + F +L L ++ L NNQ+ S+ LT+L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 124 LYLSHNQLTEF---LLDDIRGLKRLR 146
LYL NQL + D + LK LR
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 160 TRNEGKNQV--QGVT----------NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK 206
T NEGK +V QG + + +L LQ + L D G+ L+ L+L +N+
Sbjct: 11 TCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
L+T+S F L L L +++N L +L L L++L++ N L L
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
GLT L WL L+ N+L++L G L++L L + NQL +LP + +QL LY
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
N++ SL G+ LTKL+ ++ NQ+ + F L NL ++SL NQ+ S+ + +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 117 GLTKLAYLYLSHNQL 131
L KL + L NQ
Sbjct: 177 RLGKLQTITLFGNQF 191
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAY 123
D RGLTKL N+D+NQ+ + F +L L ++ L NNQ+ S+ LT+L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 124 LYLSHNQLTEF---LLDDIRGLKRLR 146
LYL NQL + D + LK LR
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 160 TRNEGKNQV--QGVT----------NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK 206
T NEGK +V QG + + +L LQ + L D G+ L+ L+L +N+
Sbjct: 11 TCNEGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70
Query: 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
L+T+S F L L L +++N L +L L L++L++ N L L
Sbjct: 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL 122
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 128/275 (46%), Gaps = 32/275 (11%)
Query: 10 LNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL----YANNNRITSL 64
LN N + ++E G L L+ L + N+L+ +P + +F+ L +L + N + L
Sbjct: 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFTGLSNLTKLDISENKIVILL 120
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAY 123
D + + L L+ + N + + F L++L+ ++L+ +TS+ + +LS L L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN--EGKN--------------- 166
L L H + + L RL+ +++S+ T N G N
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 167 --QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLD---LSHNKLRTISPDDFIGLDSL 221
V+ + + L L +N I ++G+++ H L RL L +L + P F GL+ L
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSML--HELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++L++S N LTTLEE+ + LE L + N L
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 21/178 (11%)
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ 130
T+ ++ ++ N+I + +DEF + +L+ + L N ++++ + + L L L L N+
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 131 LTEFLLDDIRGLKRLRTVDLSYNKI-----------NKFGTRNEGKNQV--------QGV 171
L L GL L +D+S NKI + G N + G+
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 172 TNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
++ +L L+ + ++ AL +HGL L L H + I F L LK+L+ISH
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 8/114 (7%)
Query: 173 NIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
N+ L L+ N ++ + G G+ L++LD+S NK+ + F L +LK L++ N L
Sbjct: 81 NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 232 TTLEETSKTFLPALEELFVSHNSLTRLDKD----FHGLPVLCKADLAHNNIKAI 281
+ + + L +LE+L + +LT + + HGL VL L H NI AI
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL---RLRHLNINAI 191
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQL---GSLYAN 57
LT L L+LN+N+L++L G L L+ L + N+L+ALP I +F QL L +
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLD 117
Query: 58 NNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
N++ SL + LTKL ++ +N++ + + F L +L + L NNQ+ + +
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
LT+L L L +NQL L++L+ + L N
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 101 ISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ LQ+N+++S+ S + LTKL LYL+ N+L + LK L T+ ++ NK+
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGL 218
+ N+ EL+L N++++L + + L+ L L +N+L+++ F L
Sbjct: 102 I-----GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
SLK L + +N L + E + L L+ L + +N L R+
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
+LDL NKL ++ F L L++L ++ N L TL L LE L+V+ N L L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 42/284 (14%)
Query: 9 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ-LGSLYANNNRITSLDG- 66
F N+ K L + +++LL + Q+E + + ++ + LY N I L
Sbjct: 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 111
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLY 125
+ + + L V ++ N ++ + R F N L ++S+ NN + + + + T L L
Sbjct: 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYN---------KINKFGTRNEGKNQVQGVTNI-- 174
LS N+LT D+ + L ++SYN + + + N V+G N+
Sbjct: 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
LKLQHN + + L+ GL +DLS+N+L I F+ + L
Sbjct: 229 TILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------- 274
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNI 278
E L++S+N L L+ +P L DL+HN++
Sbjct: 275 -----------ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 2 LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
LT+L +L L N+L+SL G L+ L+ LV+ +NQL++LP + + L LY +N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
++ SL G+ LT L ++D NQ+ + F L L +SL +NQ+ S+ +
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKR 144
LT L +++L +N + DI L R
Sbjct: 204 LTSLTHIWLLNNPW-DCACSDILYLSR 229
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 13/166 (7%)
Query: 92 FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTV 148
Q L N+ ++L N++ + S+L LT L YL L+ NQL + D + LK L V
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
+ N+ + +G +TN+ L L HN++++L G + L+RLDL +N+L
Sbjct: 118 E------NQLQSLPDGV--FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
+++ F L LK L ++ N L ++ + L +L +++ +N
Sbjct: 170 QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 17/166 (10%)
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
L+++D I N+ I S+ + L + YL L N+L DI LK L +L+Y
Sbjct: 40 LNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKL-----HDISALKEL--TNLTYLI 91
Query: 155 INKFGTRNEGKNQVQGV----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT 209
+ T N+ ++ GV TN+ EL L N++++L DG + L+ L L HN+L++
Sbjct: 92 L----TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ F L +L LD+ +N L +L E L L++L ++ N L
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 139 IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGL 197
I+ L +R + L NK++ E +TN+ L L N++++L +G + L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKE-------LTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257
L L N+L+++ F L +L L + HN L +L + L L L + +N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Query: 258 LDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
L + F L L + L N +K++ + + L S I+L NP C
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR-------LTSLTHIWLLNNPWDC 219
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 135/312 (43%), Gaps = 62/312 (19%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA--- 56
GL+ L L L+ N+ LE G L+ L++L + Q L+ F L SL
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 57 --NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE---FQNLH----NLDSISLQ--- 104
NN + + + V ++ FN++ + ++ FQ H L SI+LQ
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 105 --------------NNQITSMNSSLSGL--------------TKLAYLYLSHNQ------ 130
N IT+++ S +G TK+ L LS++
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 131 -LTEFLLDD---IRGLKR--LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184
T F D +GL+ ++T DLS +KI F K+ T++ +L L NEI
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKI--FALL---KSVFSHFTDLEQLTLAQNEI 311
Query: 185 ENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
+D A G+ L +L+LS N L +I F LD L++LD+S+N + L + S LP
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 244 ALEELFVSHNSL 255
L+EL + N L
Sbjct: 372 NLKELALDTNQL 383
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS +++ L L + L+ N+INK N G+T++ +L L N +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-----DNAFWGLTHLLKLNLSQNFLG 336
Query: 186 NLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
++D + + L LDLS+N +R + F+GL +LK L + N L ++ + L +
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396
Query: 245 LEELFVSHN----SLTRLD 259
L+++++ N S R+D
Sbjct: 397 LQKIWLHTNPWDCSCPRID 415
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 118/277 (42%), Gaps = 68/277 (24%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG-----LTKLA 122
RGL+ L + +D+NQ + F L NL+ ++L Q + LSG LT L
Sbjct: 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL--TQCNLDGAVLSGNFFKPLTSLE 132
Query: 123 YLYLSHN-----QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L N Q F L+ ++R +DL++NK+ + Q + T L
Sbjct: 133 MLVLRDNNIKKIQPASFFLN----MRRFHVLDLTFNKVKSICEEDLLNFQGKHFT---LL 185
Query: 178 KLQHNEIENLDGALMGIH---------GLSRLDLSHN-----------------KLRTI- 210
+L +++++ +G ++ LDLS N K++++
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 211 -----------------SPDDFI--GLDS--LKMLDISHNLLTTLEETSKTFLPALEELF 249
PD+F GL++ +K D+S + + L ++ + LE+L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305
Query: 250 VSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
++ N + ++D + F GL L K +L+ N + +I+ ++
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 113/253 (44%), Gaps = 38/253 (15%)
Query: 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 88
+++ + +N L +P I ++L +L+ N +I ++ + L L++ + N I +
Sbjct: 47 KVICVRKN-LREVPDGISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIE 104
Query: 89 RDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
F L NL+++ L +N++T++ N + L+KL L+L +N + + LR
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164
Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH---NEIENLDGALMGIHGLSRLDLSH 204
+DL ++ + +EG +G++N+ L L EI NL + L LDLS
Sbjct: 165 LDLG--ELKRLSYISEGA--FEGLSNLRYLNLAMCNLREIPNLTPLI----KLDELDLSG 216
Query: 205 NKLRTISPDDFIGL------------------------DSLKMLDISHNLLTTLEETSKT 240
N L I P F GL SL ++++HN LT L T
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276
Query: 241 FLPALEELFVSHN 253
L LE + + HN
Sbjct: 277 PLHHLERIHLHHN 289
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 53/231 (22%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL +LN L L +NRL ++ G LSKL+ L + N +E++PS YA
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-----------YA--- 155
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
FN+I +RR + L L IS + GL+
Sbjct: 156 ---------------------FNRIPSLRRLDLGELKRLSYIS---------EGAFEGLS 185
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L YL L+ L E + ++ L +L +DLS N ++ QG+ ++ +L +
Sbjct: 186 NLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAI-----RPGSFQGLMHLQKLWM 238
Query: 180 QHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
++I+ ++ A + L ++L+HN L + D F L L+ + + HN
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
TN L L N+I+ + + + L L LS N +RTI F GL +L L++ N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLA 274
LTT+ + +L L+EL++ +N + + F+ +P L + DL
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIH 195
DDI + +DLS+N + + + + + L L EIE + D A G+H
Sbjct: 28 DDIPS--STKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCEIETIEDKAWHGLH 80
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
LS L L+ N +++ SP F GL SL+ L L +LE L L++L V+HN +
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 256 --TRLDKDFHGLPVLCKADLAHNNIKAINI 283
+L F L L DL++N I+ I +
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 19/237 (8%)
Query: 27 KLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 85
K Q L I + QL+ P+ D+ L +L N I+ L L+ L ++ N ++
Sbjct: 308 KWQSLSIIRCQLKQFPTLDLPFLKSL-TLTMNKGSISFKKVALPSLSYL---DLSRNALS 363
Query: 86 MVRRDEFQNL--HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL---TEFLLDDIR 140
+ +L ++L + L N M+++ GL +L +L H+ L TEF
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFL 421
Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLS 198
L++L +D+SY T+ + G+T++ LK+ N ++ L L+
Sbjct: 422 SLEKLLYLDISYT-----NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
LDLS +L IS F L L++L++SHN L L+ + L +L L S N +
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLL 136
++ FN + +++ F N L + L +I ++ + + GL L+ L L+ N + F
Sbjct: 38 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 97
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGI 194
GL L + K+ + G+ + + +L + HN I + L +
Sbjct: 98 GSFSGLTSLENLVAVETKLASLESFPIGQ-----LITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 195 HGLSRLDLSHNKLRTISPDD 214
L +DLS+N ++TI+ +D
Sbjct: 153 TNLVHVDLSYNYIQTITVND 172
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 51 LGSLYANNNRITSLD-----------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 99
L +++AN +T LD G+ L +LQ+ NM N + + + L++L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 100 SISLQNNQITSMNSSLSGLTK-LAYLYLSHNQLT 132
++ N+I + L K LA+ L++N +
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 10/150 (6%)
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIH 195
DDI + +DLS+N + + + + + L L EIE + D A G+H
Sbjct: 23 DDIPS--STKNIDLSFNPLKILKSYS-----FSNFSELQWLDLSRCEIETIEDKAWHGLH 75
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
LS L L+ N +++ SP F GL SL+ L L +LE L L++L V+HN +
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 135
Query: 256 --TRLDKDFHGLPVLCKADLAHNNIKAINI 283
+L F L L DL++N I+ I +
Sbjct: 136 HSCKLPAYFSNLTNLVHVDLSYNYIQTITV 165
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 108/237 (45%), Gaps = 19/237 (8%)
Query: 27 KLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 85
K Q L I + QL+ P+ D+ L +L N I+ L L+ L ++ N ++
Sbjct: 303 KWQSLSIIRCQLKQFPTLDLPFLKSL-TLTMNKGSISFKKVALPSLSYL---DLSRNALS 358
Query: 86 MVRRDEFQNL--HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL---TEFLLDDIR 140
+ +L ++L + L N M+++ GL +L +L H+ L TEF
Sbjct: 359 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFL 416
Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLS 198
L++L +D+SY T+ + G+T++ LK+ N ++ L L+
Sbjct: 417 SLEKLLYLDISYT-----NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 471
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
LDLS +L IS F L L++L++SHN L L+ + L +L L S N +
Sbjct: 472 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLL 136
++ FN + +++ F N L + L +I ++ + + GL L+ L L+ N + F
Sbjct: 33 DLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP 92
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGI 194
GL L + K+ + G+ + + +L + HN I + L +
Sbjct: 93 GSFSGLTSLENLVAVETKLASLESFPIGQ-----LITLKKLNVAHNFIHSCKLPAYFSNL 147
Query: 195 HGLSRLDLSHNKLRTISPDD 214
L +DLS+N ++TI+ +D
Sbjct: 148 TNLVHVDLSYNYIQTITVND 167
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 51 LGSLYANNNRITSLD-----------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 99
L +++AN +T LD G+ L +LQ+ NM N + + + L++L
Sbjct: 460 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 519
Query: 100 SISLQNNQITSMNSSLSGLTK-LAYLYLSHNQLT 132
++ N+I + L K LA+ L++N +
Sbjct: 520 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 553
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 114 SLSGLTK--LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
+ +GL + + +L LSH + LK L+ ++L+YNKINK G+
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-----DEAFYGL 313
Query: 172 TNIFELKLQHNEIENLDGA-LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
N+ L L +N + L + G+ ++ +DL N + I F L+ L+ LD+ N
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDK 260
LTT+ F+P++ ++F+S N L L K
Sbjct: 374 LTTIH-----FIPSIPDIFLSGNKLVTLPK 398
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 39/250 (15%)
Query: 65 DGLLRGLTKLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSMNS----SLSGLT 119
DG R L L ++ NQI ++ F L++L SI +NQI + L G T
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175
Query: 120 KLAYLYLSHNQL-TEFLLDDIRGLKRLR-----TVDLSYN--KINKFGTRNEGKNQVQGV 171
L++ L+ N L + +D + + R +D+S N ++ G + ++ Q
Sbjct: 176 -LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA- 233
Query: 172 TNIFELKLQHNEIENLDGALMGIH-----------GLSR-----LDLSHNKLRTISPDDF 215
F L L H+ + GA G H GL+R LDLSH + +++ F
Sbjct: 234 ---FSLILAHH----IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286
Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLA 274
L LK+L++++N + + + + L L+ L +S+N L L +F+GLP + DL
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 275 HNNIKAINIQ 284
N+I I Q
Sbjct: 347 KNHIAIIQDQ 356
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 55 YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NS 113
Y N+I D GL LQV N+ +N + + F L + I LQ N I + +
Sbjct: 299 YNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
+ L KL L L N LT I + + + LS NK+ N N +
Sbjct: 357 TFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKINLTANLIH---- 407
Query: 174 IFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLD-SLKMLDISHNL 230
L N +ENLD L+ + L L L+ N+ + S D + SL+ L + N+
Sbjct: 408 -----LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 231 LTTLEETSKTF-----LPALEELFVSHNSLTRL 258
L ET + L L+ L+++HN L L
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
GL+ L LYL+HN L L LR + L+ N++
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT------------------ 517
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
L HN++ L LD+S N+L +PD F+ SL +LDI+HN
Sbjct: 518 ---VLSHNDLPA---------NLEILDISRNQLLAPNPDVFV---SLSVLDITHN 557
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 54/272 (19%)
Query: 73 KLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131
K+Q+ + +N + T Q L + NQ+ + KLA L L++NQ+
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK---------LQHN 182
TE + +++ + ++NK+ + + NIF+ K +N
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL-------------KYIPNIFDAKSVSVXSAIDFSYN 412
Query: 183 EIENLDG---------ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233
EI ++DG GI+ +S ++LS+N++ + F L +++ N LT
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTE 471
Query: 234 LEETS---------KTFLPALEELFVSHNSLTRLDKDFHG--LPVLCKADLAHNNIKAIN 282
+ + S T+L L + + N LT+L DF LP L DL++N+
Sbjct: 472 IPKNSLKDENENFKNTYL--LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFP 529
Query: 283 IQLALKTQCQIFGL--------NSTLRIYLEG 306
Q + + FG+ N TLR + EG
Sbjct: 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 122/284 (42%), Gaps = 42/284 (14%)
Query: 9 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ-LGSLYANNNRITSLDG- 66
F N+ K L + +++LL + Q+E + + ++ + LY N I L
Sbjct: 58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLY 125
+ + + L V ++ N ++ + R F N L ++S+ NN + + + + T L L
Sbjct: 118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYN---------KINKFGTRNEGKNQVQGVTNI-- 174
LS N+LT D+ + L ++SYN + + + N V+G N+
Sbjct: 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 234
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
LKLQHN + + L+ GL +DLS+N+L I F+ + L
Sbjct: 235 TILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL------------- 280
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNI 278
E L++S+N L L+ +P L DL+HN++
Sbjct: 281 -----------ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 8/134 (5%)
Query: 2 LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL-YAN-- 57
LT+L +L L N+L+SL G L+ L+ LV+ +NQL++LP + F +L +L Y N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV--FDKLTNLTYLNLA 141
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
+N++ SL G+ LT L ++ +NQ+ + F L L + L NQ+ S+ +
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201
Query: 116 SGLTKLAYLYLSHN 129
LT L Y++L N
Sbjct: 202 DRLTSLQYIWLHDN 215
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 92 FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTV 148
Q L N+ ++L N++ + S+L LT L YL L+ NQL + D + LK L V
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
+ N+ + +G +TN+ L L HN++++L G + L+ LDLS+N+L
Sbjct: 118 E------NQLQSLPDGV--FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
+++ F L LK L + N L ++ + L +L+ +++ N
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 87/166 (52%), Gaps = 17/166 (10%)
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
L+++D I N+ I S+ + L + YL L N+L DI LK L +L+Y
Sbjct: 40 LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKL-----HDISALKEL--TNLTYLI 91
Query: 155 INKFGTRNEGKNQVQGV----TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT 209
+ T N+ ++ GV TN+ EL L N++++L DG + L+ L+L+HN+L++
Sbjct: 92 L----TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS 147
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ F L +L LD+S+N L +L E L L++L + N L
Sbjct: 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 16/175 (9%)
Query: 139 IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGL 197
I+ L +R + L NK++ E +TN+ L L N++++L +G + L
Sbjct: 59 IQYLPNVRYLALGGNKLHDISALKE-------LTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257
L L N+L+++ F L +L L+++HN L +L + L L EL +S+N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 258 LDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
L + F L L L N +K++ + + L S I+L NP C
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR-------LTSLQYIWLHDNPWDC 219
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 16/145 (11%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L G+ L FN I + Q L+NL + L++NQIT + + L LTK+ L LS
Sbjct: 46 LDGIATLSAFNTGVTTI-----EGIQYLNNLIGLELKDNQITDL-TPLKNLTKITELELS 99
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
N L + I GL+ ++T+DL+ +I + G++N+ L L N+I N+
Sbjct: 100 GNPLKN--VSAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNI 150
Query: 188 DGALMGIHGLSRLDLSHNKLRTISP 212
L G+ L L + +N++ ++P
Sbjct: 151 -SPLAGLTNLQYLSIGNNQVNDLTP 174
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 8/155 (5%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L L L +N++ L L L+K+ L + N L+ + S I + +L + +I
Sbjct: 68 LNNLIGLELKDNQITDLT-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQI 125
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T + L GL+ LQV +D NQIT + L NL +S+ NNQ+ + + L+ L+KL
Sbjct: 126 TDVTPL-AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNNQVNDL-TPLANLSKL 181
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
L N++++ + + L L V L N+I+
Sbjct: 182 TTLRADDNKISD--ISPLASLPNLIEVHLKDNQIS 214
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
++ Q+T++ L T + L+LS N L F L + RL ++L ++ K
Sbjct: 15 VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
QV G + L L HN++++L + L+ LD+S N+L ++ GL
Sbjct: 71 ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
L+ L + N L TL T P LE+L +++N LT L +GL L L N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
I FG + +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81
GTL L L + NQL++LP Q L L + NR+TSL G LRGL +LQ +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 131
N++ + L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 33 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 92
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL---Y 130
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTIS 211
K N+ T G + + +L L +N++ L L+ G+ L L L N L TI
Sbjct: 131 LKGNELKTLPPG--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI- 187
Query: 212 PDDFIG 217
P F G
Sbjct: 188 PKGFFG 193
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
++ Q+T++ L T + L+LS N L F L + RL ++L ++ K
Sbjct: 15 VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
QV G + L L HN++++L + L+ LD+S N+L ++ GL
Sbjct: 71 ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
L+ L + N L TL T P LE+L +++N LT L +GL L L N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
I FG + +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81
GTL L L + NQL++LP Q L L + NR+TSL G LRGL +LQ +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 131
N++ + L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 33 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 92
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL---Y 130
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTIS 211
K N+ T G + + +L L +N++ L L+ G+ L L L N L TI
Sbjct: 131 LKGNELKTLPPG--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI- 187
Query: 212 PDDFIG 217
P F G
Sbjct: 188 PKGFFG 193
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
++ Q+T++ L T + L+LS N L F L + RL ++L ++ K
Sbjct: 15 VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
QV G + L L HN++++L + L+ LD+S N+L ++ GL
Sbjct: 71 ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
L+ L + N L TL T P LE+L +++N LT L +GL L L N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
I FG + +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81
GTL L L + NQL++LP Q L L + NR+TSL G LRGL +LQ +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 131
N++ + L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 33 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 92
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL---Y 130
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTIS 211
K N+ T G + + +L L +N++ L L+ G+ L L L N L TI
Sbjct: 131 LKGNELKTLPPG--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI- 187
Query: 212 PDDFIG 217
P F G
Sbjct: 188 PKGFFG 193
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 95/214 (44%), Gaps = 20/214 (9%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
++ Q+T++ L T + L+LS N L F L + RL ++L ++ K
Sbjct: 15 VNCDKRQLTALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL-- 70
Query: 161 RNEGKNQVQGVTNIF-ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
QV G + L L HN++++L + L+ LD+S N+L ++ GL
Sbjct: 71 ------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
L+ L + N L TL T P LE+L +++N LT L +GL L L N++
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
I FG + +L GNP LC+
Sbjct: 185 YTIPK--------GFFGSHLLPFAFLHGNPWLCN 210
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81
GTL L L + NQL++LP Q L L + NR+TSL G LRGL +LQ +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 131
N++ + L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 10/186 (5%)
Query: 33 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 92
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + Y
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL---Y 130
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM-GIHGLSRLDLSHNKLRTIS 211
K N+ T G + + +L L +N++ L L+ G+ L L L N L TI
Sbjct: 131 LKGNELKTLPPG--LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTI- 187
Query: 212 PDDFIG 217
P F G
Sbjct: 188 PKGFFG 193
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 75/293 (25%)
Query: 26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 85
+ + +L + NQL LP+ AN R + L L ++ FN I+
Sbjct: 30 TNITVLNLTHNQLRRLPA------------ANFTRYSQLTSL----------DVGFNTIS 67
Query: 86 MVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
+ + Q L L ++LQ+N+++ + + + + T L L+L N + + + K
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 127
Query: 145 LRTVDLSYNKIN--KFGTR---------NEGKNQVQGVT----NIF------ELKLQHNE 183
L T+DLS+N ++ K GT+ N++Q + +IF +L+L N+
Sbjct: 128 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 187
Query: 184 IENLD-------GALMGIH---------------------GLSRLDLSHNKLRTISPDDF 215
I+ G L G+ + L LS+++L T S F
Sbjct: 188 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 247
Query: 216 IGLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGL 265
+GL +L MLD+S+N L + S +LP LE F+ +N++ L HGL
Sbjct: 248 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 300
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 28/288 (9%)
Query: 1 GLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
GL +L +L L+N+ L++L + S L +L + +N++ + SD FS LG L
Sbjct: 356 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLE 413
Query: 56 ANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
+ + + L RGL + + +N+ + R+ F + +L + L+ + +
Sbjct: 414 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 473
Query: 111 MNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
++SS S L L L LS+N + D + GL++L +DL +N + +
Sbjct: 474 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 533
Query: 168 V---QGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
+ +G++++ L L+ N + + + + L +DL N L T+ F SLK
Sbjct: 534 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 593
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA 271
L++ NL+T++E+ K F PA +LT LD F+ C++
Sbjct: 594 LNLQKNLITSVEK--KVFGPAFR-------NLTELDMRFNPFDCTCES 632
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
D + L L+ NM+ N I ++ + F L NL +SL N+ +SL LT ++
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 381
Query: 125 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L+H N++++ D L L +DL N+I + T E + G+ NI
Sbjct: 382 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR----GLENI 437
Query: 175 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTI--SPDDFI--------------- 216
FE+ L +N+ L + + L RL L L+ + SP F
Sbjct: 438 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 497
Query: 217 ---------GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLP 266
GL+ L++LD+ HN L L + + P +SH + L+ + F +P
Sbjct: 498 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 557
Query: 267 VLCKADL 273
V DL
Sbjct: 558 VEVFKDL 564
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
T + L L+HNQL + +L ++D+ +N I+K Q + + L
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-----LCQKLPMLKVLN 84
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
LQHNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++ +
Sbjct: 85 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 144
Query: 238 SKTFLPALEELFVSHNSLTRLDK---DFHGLPVLCKADLAHNNIK 279
++ L L+EL +S+N + L D L K +L+ N IK
Sbjct: 145 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 189
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++ L+L+HN+LR + +F L LD+ N ++ LE LP L+ L + HN L+
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 257 RL-DKDFHGLPVLCKADLAHNNIKAI 281
+L DK F L + L N+I+ I
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSIQKI 117
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 77/294 (26%)
Query: 26 SKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
+ + +L + NQL LP+ + +SQL TSLD + FN I
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQL----------TSLD-------------VGFNTI 71
Query: 85 TMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK 143
+ + + Q L L ++LQ+N+++ + + + + T L L+L N + + + K
Sbjct: 72 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 131
Query: 144 RLRTVDLSYNKIN--KFGTR---------NEGKNQVQGVT----NIF------ELKLQHN 182
L T+DLS+N ++ K GT+ N++Q + +IF +L+L N
Sbjct: 132 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 191
Query: 183 EIENLD-------GALMGIH---------------------GLSRLDLSHNKLRTISPDD 214
+I+ G L G+ + L LS+++L T S
Sbjct: 192 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 251
Query: 215 FIGLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGL 265
F+GL +L MLD+S+N L + S +LP LE F+ +N++ L HGL
Sbjct: 252 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 305
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 28/288 (9%)
Query: 1 GLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
GL +L +L L+N+ L++L + S L +L + +N++ + SD FS LG L
Sbjct: 361 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLE 418
Query: 56 ANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
+ + + L RGL + + +N+ + R+ F + +L + L+ + +
Sbjct: 419 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 478
Query: 111 MNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
++SS S L L L LS+N + D + GL++L +DL +N + +
Sbjct: 479 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 538
Query: 168 V---QGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
+ +G++++ L L+ N + + + + L +DL N L T+ F SLK
Sbjct: 539 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 598
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA 271
L++ NL+T++E+ K F PA +LT LD F+ C++
Sbjct: 599 LNLQKNLITSVEK--KVFGPAFR-------NLTELDMRFNPFDCTCES 637
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
D + L L+ NM+ N I ++ + F L NL +SL N+ +SL LT ++
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 386
Query: 125 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L+H N++++ D L L +DL N+I + T E + G+ NI
Sbjct: 387 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR----GLENI 442
Query: 175 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTI--SPDDFI--------------- 216
FE+ L +N+ L + + L RL L L+ + SP F
Sbjct: 443 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 502
Query: 217 ---------GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLP 266
GL+ L++LD+ HN L L + + P +SH + L+ + F +P
Sbjct: 503 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 562
Query: 267 VLCKADL 273
V DL
Sbjct: 563 VEVFKDL 569
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
T + L L+HNQL + +L ++D+ +N I+K Q + + L
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-----LCQKLPMLKVLN 89
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
LQHNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++ +
Sbjct: 90 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 149
Query: 238 SKTFLPALEELFVSHNSLTRLDK---DFHGLPVLCKADLAHNNIK 279
++ L L+EL +S+N + L D L K +L+ N IK
Sbjct: 150 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 194
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++ L+L+HN+LR + +F L LD+ N ++ LE LP L+ L + HN L+
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 257 RL-DKDFHGLPVLCKADLAHNNIKAI 281
+L DK F L + L N+I+ I
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSIQKI 122
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
L+LS N L F L + RL ++L ++ K QV G + L L HN
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
++++L + L+ LD+S N+L ++ GL L+ L + N L TL T
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
P LE+L +++N+LT L +GL L L N++ I FG +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
+L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 111 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
L+LS N L F L + RL ++L ++ K QV G + L L HN
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
++++L + L+ LD+S N+L ++ GL L+ L + N L TL T
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
P LE+L +++N+LT L +GL L L N++ I FG +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
+L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 111 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
L+LS N L F L + RL ++L ++ K QV G + L L HN
Sbjct: 37 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--------QVDGTLPVLGTLDLSHN 88
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
++++L + L+ LD+S N+L ++ GL L+ L + N L TL T
Sbjct: 89 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 148
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
P LE+L +++N+LT L +GL L L N++ I FG +
Sbjct: 149 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 200
Query: 302 IYLEGNPVLCD 312
+L GNP LC+
Sbjct: 201 AFLHGNPWLCN 211
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 85 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 144
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 145 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 204
Query: 128 HN 129
N
Sbjct: 205 GN 206
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 139
Query: 111 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 126/293 (43%), Gaps = 75/293 (25%)
Query: 26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 85
+ + +L + NQL LP+ AN R + L L ++ FN I+
Sbjct: 25 TNITVLNLTHNQLRRLPA------------ANFTRYSQLTSL----------DVGFNTIS 62
Query: 86 MVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
+ + Q L L ++LQ+N+++ + + + + T L L+L N + + + K
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 145 LRTVDLSYNKIN--KFGTR---------NEGKNQVQGVT----NIF------ELKLQHNE 183
L T+DLS+N ++ K GT+ N++Q + +IF +L+L N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182
Query: 184 IENLD-------GALMGIH---------------------GLSRLDLSHNKLRTISPDDF 215
I+ G L G+ + L LS+++L T S F
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 216 IGLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGL 265
+GL +L MLD+S+N L + S +LP LE F+ +N++ L HGL
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 135/288 (46%), Gaps = 28/288 (9%)
Query: 1 GLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
GL +L +L L+N+ L++L + S L +L + +N++ + SD FS LG L
Sbjct: 351 GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLE 408
Query: 56 ANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
+ + + L RGL + + +N+ + R+ F + +L + L+ + +
Sbjct: 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 111 MNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
++SS S L L L LS+N + D + GL++L +DL +N + +
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Query: 168 V---QGVTNIFELKLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
+ +G++++ L L+ N + + + + L +DL N L T+ F SLK
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA 271
L++ NL+T++E+ K F PA +LT LD F+ C++
Sbjct: 589 LNLQKNLITSVEK--KVFGPAFR-------NLTELDMRFNPFDCTCES 627
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 103/247 (41%), Gaps = 47/247 (19%)
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
D + L L+ NM+ N I ++ + F L NL +SL N+ +SL LT ++
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 376
Query: 125 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L+H N++++ D L L +DL N+I + T E + G+ NI
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR----GLENI 432
Query: 175 FELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTI--SPDDFI--------------- 216
FE+ L +N+ L + + L RL L L+ + SP F
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492
Query: 217 ---------GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLP 266
GL+ L++LD+ HN L L + + P +SH + L+ + F +P
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552
Query: 267 VLCKADL 273
V DL
Sbjct: 553 VEVFKDL 559
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
T + L L+HNQL + +L ++D+ +N I+K Q + + L
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-----LCQKLPMLKVLN 79
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
LQHNE+ L D L+ L L N ++ I + F+ +L LD+SHN L++ +
Sbjct: 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 238 SKTFLPALEELFVSHNSLTRLDK---DFHGLPVLCKADLAHNNIK 279
++ L L+EL +S+N + L D L K +L+ N IK
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++ L+L+HN+LR + +F L LD+ N ++ LE LP L+ L + HN L+
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 257 RL-DKDFHGLPVLCKADLAHNNIKAI 281
+L DK F L + L N+I+ I
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKI 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
L+LS N L F L + RL ++L ++ K QV G + L L HN
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
++++L + L+ LD+S N+L ++ GL L+ L + N L TL T
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
P LE+L +++N+LT L +GL L L N++ I FG +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
+L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 111 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
L+LS N L F L + RL ++L ++ K QV G + L L HN
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
++++L + L+ LD+S N+L ++ GL L+ L + N L TL T
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
P LE+L +++N+LT L +GL L L N++ I FG +
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
+L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 111 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN-QLTEFLLDDI 139
N+I+ V FQ+ NL + L +N + ++ ++ +GLT L L LS N QL
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLS 198
RGL L T+ L ++ G + G +G+ + L LQ N ++ L D + L+
Sbjct: 101 RGLGHLHTLHL-----DRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
L L N++ ++ F GL SL L + N + + + L L L++ N+L+ L
Sbjct: 156 HLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
Query: 259 DKD 261
+
Sbjct: 216 PAE 218
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
Query: 4 DLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSLYANNNR 60
+L L+L++N L ++ T L+ L+ L + N QL + P+ + L +L+ +
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
+ L GL RGL LQ + N + + + F++L NL + L N+I S+ + GL
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
L L L N + R L RL T+ L N ++
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 111/267 (41%), Gaps = 57/267 (21%)
Query: 20 GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSL---YANNNRITSL-------DGLL 68
G L L+ L +E N ++ L P S L L A + SL D
Sbjct: 266 GSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSF 325
Query: 69 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 128
+ L L+ NMD N I + + F L +L +SL + +SL LT ++ L+H
Sbjct: 326 QWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL-----SKTFTSLQTLTNETFVSLAH 380
Query: 129 ----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
N +++ L +LR +DL N+I + + E + G+ NIFE+
Sbjct: 381 SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWR----GLRNIFEIY 436
Query: 179 LQHNE------------------------IENLD---GALMGIHGLSRLDLSHNKLRTIS 211
L +N+ ++N+D + L+ LDLS+N + I+
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANIN 496
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETS 238
D GL++L++LD HN L L + +
Sbjct: 497 EDLLEGLENLEILDFQHNNLARLWKRA 523
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++ L+L+HN+LR + P +F L +LD N ++ LE LP L+ L + HN L+
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 257 RL-DKDFHGLPVLCKADLAHNNIKAI 281
++ D+ F L + DL N+I I
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSIHKI 112
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 49/203 (24%)
Query: 26 SKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQ 83
S + +L + NQL LP ++ +SQL L A N I+ L+ L + L L+V N+ N+
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK 143
++ + F NL + L +N I + S + + K
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKS-----------------------NPFKNQK 121
Query: 144 RLRTVDLSYNKIN--KFGT---------RNEGKNQVQGVTNIFELKLQHNEIENLDGALM 192
L +DLS+N ++ K GT KN++ L L+ E+E +
Sbjct: 122 NLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKI--------LALRSEELE-----FL 168
Query: 193 GIHGLSRLDLSHNKLRTISPDDF 215
G L +LDLS N L+ SP F
Sbjct: 169 GNSSLRKLDLSSNPLKEFSPGCF 191
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
+ + L L+HNQL + +L +D +N I+K Q + + L
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-----LCQILPLLKVLN 79
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
LQHNE+ + D + L+ LDL N + I + F +L LD+SHN L++ +
Sbjct: 80 LQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLG 139
Query: 238 SKTFLPALEELFVSHNSLTRL---DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF 294
+ L L+EL ++ N + L + +F G L K DL+ N +K + +T ++F
Sbjct: 140 TGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPG-CFQTIGKLF 198
Query: 295 GL 296
L
Sbjct: 199 AL 200
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L ++ LFLN N+L ++ L L L L +++N+++ L S ++ +L SL +N I
Sbjct: 67 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 124
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ ++GL L L L + N IT++ R L LD++SL++NQI+ + L+GLT
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
KL LYLS N ++ D+R L L+ +D+
Sbjct: 179 KLQNLYLSKNHIS-----DLRALAGLKNLDV 204
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF-ELKLQHN 182
L+LS N L F L + RL ++L ++ K QV G + L L HN
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKL--------QVDGTLPVLGTLDLSHN 87
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
++++L + L+ LD+S N+L ++ GL L+ L + N L TL T
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 243 PALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
P LE+L +++N LT L +GL L L N++ I FG +
Sbjct: 148 PKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPF 199
Query: 302 IYLEGNPVLCD 312
+L GNP LC+
Sbjct: 200 AFLHGNPWLCN 210
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 128 HN 129
N
Sbjct: 204 GN 205
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 111 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L ++ LFLN N+L ++ L L L L +++N+++ L S ++ +L SL +N I
Sbjct: 67 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 124
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ ++GL L L L + N IT++ R L LD++SL++NQI+ + L+GLT
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 178
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
KL LYLS N ++ D+R L L+ +D+
Sbjct: 179 KLQNLYLSKNHIS-----DLRALAGLKNLDV 204
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 80/170 (47%), Gaps = 31/170 (18%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
LTDL L LN N+++ + L +L+ L NQ+ + + + ++L SL NN+I
Sbjct: 176 LTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDI-TPVANXTRLNSLKIGNNKI 233
Query: 62 TSLDGL---------------------LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100
T L L ++ LTKL+ N+ NQI+ + NL L+S
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISV--LNNLSQLNS 291
Query: 101 ISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149
+ L NNQ+ + + + GLT L L+LS N +T DIR L L D
Sbjct: 292 LFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT-----DIRPLASLSKXD 336
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 15/145 (10%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L +TKL V ++ ++ E+ L NL+ ++L NQIT + S LS L KL LY+
Sbjct: 43 LESITKLVVAG---EKVASIQGIEY--LTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIG 96
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
N++T+ + ++ L LR + L+ + I+ + +T + L L N +
Sbjct: 97 TNKITD--ISALQNLTNLRELYLNEDNISDIS-------PLANLTKXYSLNLGANHNLSD 147
Query: 188 DGALMGIHGLSRLDLSHNKLRTISP 212
L GL+ L ++ +K++ ++P
Sbjct: 148 LSPLSNXTGLNYLTVTESKVKDVTP 172
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 21/147 (14%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
L+ NN+L SL S LQ L + NQL +LP+ L S+L L+A NNR+TSL L
Sbjct: 166 LWAYNNQLTSLPM---LPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLPAL 219
Query: 68 LRG----------LTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMNS 113
G LT L V + ++ MV + +L L S+S+ NQ+T +
Sbjct: 220 PSGLKELIVSGNRLTSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPE 278
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIR 140
SL L+ + L N L+E L +R
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L ++ LFLN N+L ++ L L L L +++N+++ L S ++ +L SL +N I
Sbjct: 65 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 122
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ ++GL L L L + N IT++ R L LD++SL++NQI+ + L+GLT
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 176
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
KL LYLS N ++ D+R L L+ +D+
Sbjct: 177 KLQNLYLSKNHIS-----DLRALAGLKNLDV 202
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
L G+T L F I + Q L+NL + L++NQIT + + L LTK+ L LS
Sbjct: 40 LDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELS 93
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
N L + I GL+ ++T+DL+ +I + G++N+ L L N+I N+
Sbjct: 94 GNPLKN--VSAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNI 144
Query: 188 DGALMGIHGLSRLDLSHNKLRTISP 212
L G+ L L + + ++ ++P
Sbjct: 145 S-PLAGLTNLQYLSIGNAQVSDLTP 168
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L L L +N++ L L L+K+ L + N L+ + S I + +L + +I
Sbjct: 62 LNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQI 119
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T + L GL+ LQV +D NQIT + L NL +S+ N Q++ + + L+ L+KL
Sbjct: 120 TDVTPL-AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-TPLANLSKL 175
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
L N++++ + + L L V L N+I+ + + +N+F + L +
Sbjct: 176 TTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDV-------SPLANTSNLFIVTLTN 226
Query: 182 NEIEN 186
I N
Sbjct: 227 QTITN 231
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 122 AYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
A L L++N+ T I + L +LR ++ S NKI EG +G + + E+ L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI---EEG--AFEGASGVNEILLT 89
Query: 181 HNEIENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
N +EN+ + G+ L L L N++ + D FIGL S+++L + N +TT+
Sbjct: 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 50 QLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
QL + +NN+IT ++ G G + + + N++ V+ F+ L +L ++ L++N+I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 109 TSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
T + N S GL+ + L L NQ+T L L T++L N N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 33/174 (18%)
Query: 37 QLEALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+L +P I ++ L NNN T L+ G+ + L +L+ N N+IT + F+
Sbjct: 22 KLNKIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
++ I L +N++ ++ + +GL+ L+T+ L N+
Sbjct: 80 ASGVNEILLTSNRLENVQHKM-----------------------FKGLESLKTLMLRSNR 116
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
I G + G++++ L L N+I + GA +H LS L+L N
Sbjct: 117 ITCVGN-----DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 147 TVDLSYNKINKFGTR----------NEGKNQVQGVTNIFE-------LKLQHNEIENLD- 188
TVD S K+NK N + V T IF+ + +N+I +++
Sbjct: 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE 74
Query: 189 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
GA G G++ + L+ N+L + F GL+SLK L + N +T + S L ++ L
Sbjct: 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134
Query: 249 FVSHNSLT 256
+ N +T
Sbjct: 135 SLYDNQIT 142
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 8 LFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL 64
L LNNN LE G L +L+ + N++ + + S + + +NR+ ++
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96
Query: 65 D-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
+ +GL L+ + N+IT V D F L ++ +SL +NQIT++
Sbjct: 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 10 LNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL--D 65
+NN++ +E G S + +++ N+LE + + + L +L +NRIT + D
Sbjct: 64 FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
Query: 66 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ GL+ +++ ++ NQIT V F LH+L +++L N
Sbjct: 124 SFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 15/151 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L ++ LFLN N+L ++ L L L L +++N+++ L S ++ +L SL +N I
Sbjct: 87 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 144
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ ++GL L L L + N IT++ R L LD++SL++NQI+ + L+GLT
Sbjct: 145 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLT 198
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
KL LYLS N ++ D+R L L+ +D+
Sbjct: 199 KLQNLYLSKNHIS-----DLRALAGLKNLDV 224
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 17/168 (10%)
Query: 92 FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
Q L NL S++L NNQIT + S + L + L+L+ N+LT DI+ L L+ +
Sbjct: 62 IQYLPNLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLT-----DIKPLANLKNLGWL 115
Query: 152 YNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 211
+ NK + K+ + + E HN I +++G L+ + L L L +NK+ I+
Sbjct: 116 FLDENKVKDLSSLKDLKKLKSLSLE----HNGISDING-LVHLPQLESLYLGNNKITDIT 170
Query: 212 P-DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
LD+L + D + + L +K L+ L++S N ++ L
Sbjct: 171 VLSRLTKLDTLSLEDNQISDIVPLAGLTK-----LQNLYLSKNHISDL 213
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 14/132 (10%)
Query: 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG 164
NN + + +++ LT+L YLY++H ++ + D + +K L T+D SYN ++ GT
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--GTLPP- 143
Query: 165 KNQVQGVTNIFELKLQHNEIENLDGALMGIHG-----LSRLDLSHNKLRTISPDDFIGLD 219
+ + N+ + N I GA+ +G + + +S N+L P F L+
Sbjct: 144 --SISSLPNLVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 220 SLKMLDISHNLL 231
L +D+S N+L
Sbjct: 199 -LAFVDLSRNML 209
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 98/226 (43%), Gaps = 18/226 (7%)
Query: 24 TLSKLQLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81
T K+Q+ N LE P+ +Q +LG L +N++ L+ + KL +D+
Sbjct: 546 TGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNV-KLTDLKLDY 604
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQIT-------SMNSSLSGLTKLAYLYL-SHNQLTE 133
NQI + D ++ + +N++ + + + G +Y + S +
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNIS 664
Query: 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQG---VTNIFELKLQHNEIENLDGA 190
DD +G+ TV LSYN+I KF T ++N + N ++ DG
Sbjct: 665 CSXDDYKGI-NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGN 723
Query: 191 LMGIHGLSRLDLSHNKLRTISPDDFIG--LDSLKMLDISHNLLTTL 234
+ L+ +DL NKL ++S DDF L L D+S+N ++
Sbjct: 724 YKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNXDVSYNCFSSF 768
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 142/375 (37%), Gaps = 120/375 (32%)
Query: 49 SQLGSLYANNNRITSLDGLLRGLTKLQVF-------------------NMDFNQITMVRR 89
+Q+G+L NRIT + ++ LTKLQ+ N D+ +
Sbjct: 428 TQIGNL---TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 90 DEFQNLHNLDSISLQN--------------NQITSMNSSL----------SGLTKLA--- 122
+ NL +L + L N ++ S+N + + T+LA
Sbjct: 485 LSWSNLKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDE 544
Query: 123 -------YLYLSHNQLTEF-------------LLD----DIRGLK------RLRTVDLSY 152
Y +N L EF LLD +R L+ +L + L Y
Sbjct: 545 DTGPKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604
Query: 153 NKINK-------FGTRNEG----KNQVQGVTNIFELK---------LQHNEI----ENLD 188
N+I + F + EG N+++ + NIF K +N+I N+
Sbjct: 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVXGSVDFSYNKIGSEGRNIS 664
Query: 189 GALMGIHGL--SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS-------- 238
+ G+ S + LS+N+++ + F + + +S+NL T++ E S
Sbjct: 665 CSXDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLXTSIPENSLKPKDGNY 724
Query: 239 -KTFLPALEELFVSHNSLTRLDKDFHG--LPVLCKADLAHNNIKAINIQLALKTQCQIFG 295
T+L L + + N LT L DF LP L D+++N + Q +Q + FG
Sbjct: 725 KNTYL--LTTIDLRFNKLTSLSDDFRATTLPYLSNXDVSYNCFSSFPTQPLNSSQLKAFG 782
Query: 296 LNSTLRIYLEGNPVL 310
+ EGN +L
Sbjct: 783 IRHQRDA--EGNRIL 795
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 20 GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF 77
G KL+ + + NQ+ L P Q L SL N+IT L L GL LQ+
Sbjct: 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQI-TSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
++ N+I +R D FQ+LHNL+ +SL +N++ T + S L + ++L+ N F+
Sbjct: 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN---PFIC 166
Query: 137 D 137
D
Sbjct: 167 D 167
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 98 LDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ I L+ N I + + S KL + LS+NQ++E D +GL+ L ++ L NKI
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 215
+ K+ +G+ ++ L L N+I L A +H L+ L L NKL+TI+ F
Sbjct: 94 EL-----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 216 IGLDSLKMLDISHN 229
L +++ + ++ N
Sbjct: 149 SPLRAIQTMHLAQN 162
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 174 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL SL L + N +T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 233 TLEETSKTFLPALEELFVSHNSLT--RLD--KDFHGLPVLCKADLAHNNIKAINIQLALK 288
L ++ L +L+ L ++ N + R+D +D H L +L L N ++ I
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL---SLYDNKLQTI------- 143
Query: 289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMET 324
+ L + ++L NP +CD ++ + D + T
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 2 LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
LT L L+L N+L+SL G L+ L L + NQL++LP+ + +QL L N N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
++ SL DG+ LT+L+ + NQ+ V F L +L I L +N
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSL-DGLLRGLTKLQVFN 78
G ++ L +E N L++LP+ + F +L SL Y N++ SL +G+ LT L N
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGV--FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82
Query: 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
+ NQ+ + F L L ++L NQ+ S+ + LT+L L L NQL
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 7 WLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL-YAN--NNRIT 62
+L L N LKSL G L+ L L + N+L++LP+ + F++L SL Y N N++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLSTNQLQ 89
Query: 63 SL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
SL +G+ LT+L+ ++ NQ+ + F L L + L NQ+ S+ + LT
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 121 LAYLYLSHNQLTEFLLDDIRGL 142
L Y++L H+ + IR L
Sbjct: 150 LQYIWL-HDNPWDCTCPGIRYL 170
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 77 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFL 135
+++ N + + F L +L + L N++ S+ N + LT L YL LS NQL
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 136 LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGI 194
L +L+ + L+ N++ K +T + +L+L N+++++ DG +
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDK-----LTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 195 HGLSRLDLSHNKLRTISP 212
L + L N P
Sbjct: 148 TSLQYIWLHDNPWDCTCP 165
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L WLFL+ N++K L L KL+ L +E N + + + L QL SLY NN+I
Sbjct: 107 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 164
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T IT++ R L LD++SL++NQI+ + L+GLTKL
Sbjct: 165 T--------------------DITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
LYLS N ++ D+R L L+ +D+
Sbjct: 199 QNLYLSKNHIS-----DLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L WLFL+ N++K L L KL+ L +E N + + + L QL SLY NN+I
Sbjct: 107 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 164
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T IT++ R L LD++SL++NQI+ + L+GLTKL
Sbjct: 165 T--------------------DITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
LYLS N ++ D+R L L+ +D+
Sbjct: 199 QNLYLSKNHIS-----DLRALAGLKNLDV 222
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L WLFL+ N++K L L KL+ L +E N + + + L QL SLY NN+I
Sbjct: 107 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 164
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T IT++ R L LD++SL++NQI+ + L+GLTKL
Sbjct: 165 T--------------------DITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 198
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
LYLS N ++ D+R L L+ +D+
Sbjct: 199 QNLYLSKNHIS-----DLRALAGLKNLDV 222
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 20 GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVF 77
G KL+ + + NQ+ L P Q L SL N+IT L L GL LQ+
Sbjct: 50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQI-TSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
++ N+I +R D FQ+LHNL+ +SL +N++ T + S L + ++L+ N F+
Sbjct: 110 LLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN---PFIC 166
Query: 137 D 137
D
Sbjct: 167 D 167
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 98 LDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ I L+ N I + + S KL + LS+NQ++E D +GL+ L ++ L NKI
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 215
+ K+ +G+ ++ L L N+I L A +H L+ L L NKL+TI+ F
Sbjct: 94 EL-----PKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 216 IGLDSLKMLDISHN 229
L +++ + ++ N
Sbjct: 149 SPLRAIQTMHLAQN 162
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 15/156 (9%)
Query: 174 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
I E++L+ N I+ + GA L R+DLS+N++ ++PD F GL SL L + N +T
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 233 TLEETSKTFLPALEELFVSHNSLT--RLD--KDFHGLPVLCKADLAHNNIKAINIQLALK 288
L ++ L +L+ L ++ N + R+D +D H L +L L N ++ I
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLL---SLYDNKLQTI------- 143
Query: 289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMET 324
+ L + ++L NP +CD ++ + D + T
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHT 179
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 33/149 (22%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L WLFL+ N++K L L + E N + + + L QL SLY NN+I
Sbjct: 84 LKNLGWLFLDENKIKDLSSLKDLKKLKSLSL-EHNGISDINGLVHL-PQLESLYLGNNKI 141
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T IT++ R L LD++SL++NQI+ + L+GLTKL
Sbjct: 142 TD--------------------ITVLSR-----LTKLDTLSLEDNQISDI-VPLAGLTKL 175
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
LYLS N ++ D+R L L+ +D+
Sbjct: 176 QNLYLSKNHIS-----DLRALAGLKNLDV 199
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 33/149 (22%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L +L WLFL+ N++K L L KL+ L +E N + + + L QL SLY NN+I
Sbjct: 86 LKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKI 143
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T + L R LTKL D++SL++NQI+ + L+GLTKL
Sbjct: 144 TDITVLSR-LTKL------------------------DTLSLEDNQISDI-VPLAGLTKL 177
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
LYLS N ++ D+R L L+ +D+
Sbjct: 178 QNLYLSKNHIS-----DLRALAGLKNLDV 201
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 106/220 (48%), Gaps = 19/220 (8%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM---VRRDEFQ 93
L ++P+ I S L +N++ SL G+ LT+L ++ N ++ + +F
Sbjct: 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDL 150
+L + L N + +M+S+ GL +L +L H+ Q++EF + L+ L +D+
Sbjct: 77 TT-SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDI 133
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLR 208
S+ TR G++++ LK+ N + L + L+ LDLS +L
Sbjct: 134 SHTH-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
+SP F L SL++L++SHN +L+ L +L+ L
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 56 ANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT---SM 111
N+ +TS+ G+ T+L+ ++ N++ + F L L +SL +N ++
Sbjct: 14 CNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
+ S G T L YL LS N + + + GL++L +D ++ + + + +
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV----FLSL 125
Query: 172 TNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHN 229
N+ L + H +G G+ L L ++ N + PD F L +L LD+S
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLD 259
L L T+ L +L+ L +SHN+ LD
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 100/230 (43%), Gaps = 14/230 (6%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLR----GLTKLQVF 77
G S L +E N+L++LP + +QL L ++N + S G G T L+
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYL 83
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFL 135
++ FN + + + F L L+ + Q++ + M+ S L L YL +SH
Sbjct: 84 DLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142
Query: 136 LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGI 194
GL L + ++ N + N + + N+ L L ++E L A +
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
L L++SHN ++ + L+SL++LD S N + T ++ P+
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 8 LFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSLYANNNRITSL 64
L+L++N L ++ T L+ L+ L + N QL ++ P+ +L +L+ + + L
Sbjct: 60 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 119
Query: 65 -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLA 122
GL RGL LQ + N + + D F++L NL + L N+I+S+ + GL L
Sbjct: 120 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 179
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
L L N++ R L RL T+ L N ++ T
Sbjct: 180 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 217
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 32/239 (13%)
Query: 22 LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNM 79
+G + Q + + N++ +P+ + L L+ ++N + +D GL L+ ++
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 80 DFN-QITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLD 137
N Q+ V F L L ++ L + + L GL L YLYL N L D
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGL 197
R L L + L N+I+ R A G+H L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPER----------------------------AFRGLHSL 178
Query: 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
RL L N++ + P F L L L + N L+ L + L AL+ L ++ N
Sbjct: 179 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 237
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 185 ENLDGALMGIHGLS-RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
+ L +GI S R+ L N++ + F +L +L + N+L ++ + T L
Sbjct: 20 QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 79
Query: 244 ALEELFVSHNSLTRL--DKDFHGL 265
LE+L +S N+ R FHGL
Sbjct: 80 LLEQLDLSDNAQLRSVDPATFHGL 103
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 5/158 (3%)
Query: 8 LFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSLYANNNRITSL 64
L+L++N L ++ T L+ L+ L + N QL ++ P+ +L +L+ + + L
Sbjct: 61 LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120
Query: 65 -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLA 122
GL RGL LQ + N + + D F++L NL + L N+I+S+ + GL L
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
L L N++ R L RL T+ L N ++ T
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 92/239 (38%), Gaps = 32/239 (13%)
Query: 22 LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNM 79
+G + Q + + N++ +P+ + L L+ ++N + +D GL L+ ++
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 80 DFN-QITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLD 137
N Q+ V F L L ++ L + + L GL L YLYL N L D
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGL 197
R L L + L N+I+ R A G+H L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPER----------------------------AFRGLHSL 179
Query: 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
RL L N++ + P F L L L + N L+ L + L AL+ L ++ N
Sbjct: 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 185 ENLDGALMGIHGLS-RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
+ L +GI S R+ L N++ + F +L +L + N+L ++ + T L
Sbjct: 21 QGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA 80
Query: 244 ALEELFVSHNSLTRL--DKDFHGL 265
LE+L +S N+ R FHGL
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGL 104
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 177 LKLQHNEIENLDGALMG--IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
L L HN + L + L L LSHN L IS + F+ + +L+ LD+S N L TL
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
+E + L ALE L + +N + +D++ F + L K L+ N I ++L
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 12/151 (7%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L ++ LFLN N+L ++ L L L L +++N+++ L S ++ +L SL +N I
Sbjct: 65 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 122
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ ++GL L L L + N IT++ R L LD++SL++NQI + L+ LT
Sbjct: 123 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQIRRI-VPLARLT 176
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
KL LYLS N +++ L +RGLK L ++L
Sbjct: 177 KLQNLYLSKNHISD--LRALRGLKNLDVLEL 205
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYN 153
+L + L N + +M+S+ GL +L +L H+ Q++EF + L+ L +D+S+
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT 455
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTIS 211
TR G++++ LK+ N + L + L+ LDLS +L +S
Sbjct: 456 H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 510
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
P F L SL++L++SHN +L+ L +L+ L S N
Sbjct: 511 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
G L YL LS N + + + GL++L +D ++ + + + + N+
Sbjct: 395 GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIY 449
Query: 177 LKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTL 234
L + H +G G+ L L ++ N + PD F L +L LD+S L L
Sbjct: 450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLC 269
T+ L +L+ L +SHN+ LD P C
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNFFSLDT----FPYKC 540
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 8/178 (4%)
Query: 70 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLS 127
G L+ ++ FN + + + F L L+ + Q++ + M+ S L L YL +S
Sbjct: 395 GTISLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
H GL L + ++ N + N + + N+ L L ++E L
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQCQLEQL 509
Query: 188 DG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
A + L L++SHN ++ + L+SL++LD S N + T ++ P+
Sbjct: 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASL 139
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 19 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKL 74
+G +LS L L++ N +++L + FS L SL A + SL+ G L L
Sbjct: 93 DGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150
Query: 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 113
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYN 153
+L + L N + +M+S+ GL +L +L H+ Q++EF + L+ L +D+S+
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT 431
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTIS 211
TR G++++ LK+ N + L + L+ LDLS +L +S
Sbjct: 432 H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
P F L SL++L++SHN +L+ L +L+ L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 523
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
G T L YL LS N + + + GL++L +D ++ + + + + N+
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIY 425
Query: 177 LKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTL 234
L + H +G G+ L L ++ N + PD F L +L LD+S L L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 235 EETSKTFLPALEELFVSHNSLTRLD 259
T+ L +L+ L +SHN+ LD
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLD 510
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 8/178 (4%)
Query: 70 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLS 127
G T L+ ++ FN + + + F L L+ + Q++ + M+ S L L YL +S
Sbjct: 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
H GL L + ++ N + N + + N+ L L ++E L
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQE----NFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 188 D-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
A + L L++SHN ++ + L+SL++LD S N + T ++ P+
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASL 115
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 19 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKL 74
+G +LS L L++ N +++L + FS L SL A + SL+ G L L
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 89
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)
Query: 8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL- 64
L L +N+L+SL G L++L L + QNQ+++LP + ++L LY + N++ SL
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+G+ LT+L+ +D NQ+ V F L +L I L N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMD 80
G S L +E N+L++LP + +QL L + N+I SL DG+ LTKL + +
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 81 FNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHN 129
N++ + F L L ++L NQ+ S+ + LT L ++L N
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
LT L L L+ N+++SL +G L+KL +L + +N+L++LP+ + +QL L + N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 60 RITSL-DGLLRGLTKLQVFNMDFN 82
++ S+ DG+ LT LQ + N
Sbjct: 111 QLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 54 LYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM- 111
+ N+ +TS+ G+ T+L+ ++ N++ + F L L +SL NQI S+
Sbjct: 12 IRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Query: 112 NSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRL 145
+ LTKL LYL N+L + D + LK L
Sbjct: 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 171 VTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+T + +L L N+I++L DG + L+ L L NKL+++ F L LK L + N
Sbjct: 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 230 LLTTLEETSKTFLPALEELFVSHN----SLTRLD 259
L ++ + L +L+++++ N S R+D
Sbjct: 111 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 144
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
L ++P+ I +Q+ LY +NRIT L+ G+ LT+L ++D NQ+T++ F L
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 97 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 145
L +SL +NQ+ S+ + L L +++L +N + DI L R
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW-DCACSDILYLSRW 127
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 32/132 (24%)
Query: 8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
L+L +NR+ LE G L++L L ++ NQL LP+ G
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------------G 72
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK------ 120
+ LT+L +++ NQ+ + R F NL +L I L NN S + L++
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQHP 132
Query: 121 ---LAYLYLSHN 129
YL L H+
Sbjct: 133 WLVFGYLNLDHD 144
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 15/151 (9%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L ++ LFLN N+L ++ L L L L +++N+++ L S ++ +L SL +N I
Sbjct: 62 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGI 119
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ ++GL L L L + N IT++ R L LD++SL++NQI+ + L+ LT
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQISDI-VPLACLT 173
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
KL LYLS N ++ D+R L L+ +D+
Sbjct: 174 KLQNLYLSKNHIS-----DLRALCGLKNLDV 199
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 23/125 (18%)
Query: 8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
L+L++N++ LE G +L L+ L + NQL ALP G
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV----------------------G 82
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 126
+ LT+L V ++ NQ+T++ F L +L + + N++T + + LT L +L L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142
Query: 127 SHNQL 131
NQL
Sbjct: 143 DQNQL 147
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 73/175 (41%), Gaps = 14/175 (8%)
Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
TN L L N+I L+ G + L L L N+L + F L L +LD+ N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQ 290
LT L L L+ELF+ N LT L + L L L N +K+I
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-------PH 152
Query: 291 CQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIH----GETICQPDS 341
L+S YL GNP C+ R ++ + ++T I G+ + PDS
Sbjct: 153 GAFDRLSSLTHAYLFGNPWDCE--CRDIMYLRNWVADHTSIAMRWDGKAVNDPDS 205
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 40 ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
++P+ I +Q+ LY ++N+IT L+ G+ L L+ + NQ+ + F +L L
Sbjct: 33 SVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 99 DSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 145
+ L NQ+T + S++ L L L++ N+LTE RG++RL
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL----PRGIERL 134
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 2 LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
L +L L+L +N+L +L G +L++L +L + NQL LPS + L L+ N
Sbjct: 63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
++T L + LT L +D NQ+ + F L +L L N
Sbjct: 123 KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 130
T Q+ + NQIT + F +L NL + L +NQ+ ++ + LT+L L L NQ
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
LT L L+ + + NK+ + ++ +T++ L L N+++++
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTEL------PRGIERLTHLTHLALDQNQLKSI 150
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN---QLTEFLLDDIRGLKRLRTVDLSYN 153
+L + L N + +M+S+ GL +L +L H+ Q++EF + L+ L +D+S+
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHT 431
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTIS 211
TR G++++ LK+ N + L + L+ LDLS +L +S
Sbjct: 432 H-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN----SLTRLD 259
P F L SL++L+++ N L ++ + L +L+++++ N S R+D
Sbjct: 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASL 115
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
G T L YL LS N + + + GL++L +D ++ + + + + N+
Sbjct: 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIY 425
Query: 177 LKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTL 234
L + H +G G+ L L ++ N + PD F L +L LD+S L L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 235 EETSKTFLPALEELFVSHNSL 255
T+ L +L+ L ++ N L
Sbjct: 486 SPTAFNSLSSLQVLNMASNQL 506
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 19 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKL 74
+G +LS L L++ N +++L + FS L SL A + SL+ G L L
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 89
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLS 203
++++DLS+NKI G ++ N+ L L+ + I ++G A + L LDLS
Sbjct: 54 MKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
N L ++S F L SLK L++ N TL TS
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 143
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 95 LHNLDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDD--IRG-LKRLRTVDL 150
L + I+++N+++ + S S L L +L LS N + E L + +G L+T+ L
Sbjct: 335 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 394
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
S N + E + + N+ L + N + + + L+LS +R +
Sbjct: 395 SQNHLRSMQKTGE---ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 451
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
+L++LD+S+N L + FLP L+EL++S N L L D PVL
Sbjct: 452 KT---CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PDASLFPVLLV 503
Query: 271 ADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
+A N +K++ + + L S +I+L NP C
Sbjct: 504 MKIASNQLKSVPDGIFDR-------LTSLQKIWLHTNPWDC 537
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 40 ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
++PS L + + SL + N+IT + G LR LQV + ++I + D F +L +L
Sbjct: 45 SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 99 DSISLQNNQITSMNSSLSG-LTKLAYLYLSHN 129
+ + L +N ++S++SS G L+ L YL L N
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQ 75
L +LQ L I +N+L+ LP D LF L + +N++ S+ DG+ LT LQ
Sbjct: 476 LPRLQELYISRNKLKTLP-DASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQ 526
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ LDLS NK+ I D +L++L + + + T+E + L +LE L +S N L
Sbjct: 53 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 112
Query: 256 TRLDKDFHG 264
+ L + G
Sbjct: 113 SSLSSSWFG 121
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLS 203
++++DLS+NKI G ++ N+ L L+ + I ++G A + L LDLS
Sbjct: 28 MKSLDLSFNKITYIG-----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
N L ++S F L SLK L++ N TL TS
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 22/221 (9%)
Query: 95 LHNLDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDD--IRG-LKRLRTVDL 150
L + I+++N+++ + S S L L +L LS N + E L + +G L+T+ L
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
S N + E + + N+ L + N + + + L+LS +R +
Sbjct: 369 SQNHLRSMQKTGE---ILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV 425
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
+L++LD+S+N L + FLP L+EL++S N L L D PVL
Sbjct: 426 KT---CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PDASLFPVLLV 477
Query: 271 ADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
++ N +K++ + + L S +I+L NP C
Sbjct: 478 MKISRNQLKSVPDGIFDR-------LTSLQKIWLHTNPWDC 511
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 40 ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
++PS L + + SL + N+IT + G LR LQV + ++I + D F +L +L
Sbjct: 19 SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 99 DSISLQNNQITSMNSSLSG-LTKLAYLYLSHN 129
+ + L +N ++S++SS G L+ L YL L N
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQ 75
L +LQ L I +N+L+ LP D LF L + + N++ S+ DG+ LT LQ
Sbjct: 450 LPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ LDLS NK+ I D +L++L + + + T+E + L +LE L +S N L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 256 TRLDKDFHG 264
+ L + G
Sbjct: 87 SSLSSSWFG 95
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
L ++P+ I +Q+ LY +N+IT L+ G+ LT+L ++D NQ+T++ F L
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 97 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT----VDLS 151
L +SL +NQ+ S+ + L L +++L +N + DI L R + +
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW-DCACSDILYLSRWISQHPGLVFG 137
Query: 152 YNKINKFGTRNEGKN-QVQGVT 172
Y ++ R G N V+ VT
Sbjct: 138 YLNLDPDSARCSGTNTPVRAVT 159
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
L+L +N++ LE G L++L L ++ NQL LP+ G
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------------G 72
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ LT+L +++ NQ+ + R F NL +L I L NN
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 121/311 (38%), Gaps = 72/311 (23%)
Query: 17 SLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 75
++ LG+LSKL+ L + N LE +P ++ + L+
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-----------------------VKTLE 469
Query: 76 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEF 134
+DFN +T N NL+ ISL NN++T G L LA L LS+N +
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 135 LLDDIRGLKRLRTVDLSYNKINKFGT-------------------------RNEG-KNQV 168
+ ++ + L +DL+ N N GT +N+G K +
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFN--GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587
Query: 169 QGVTNIFEL---------KLQHNEIENLDGALMGIH---------GLSRLDLSHNKLRTI 210
G N+ E +L N+ + G H + LD+S+N L
Sbjct: 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 647
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL-TRLDKDFHGLPVLC 269
P + + L +L++ HN ++ L L L +S N L R+ + L +L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 270 KADLAHNNIKA 280
+ DL++NN+
Sbjct: 708 EIDLSNNNLSG 718
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 41/263 (15%)
Query: 3 TDLNWLFLNNNRLKS-LEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNR 60
T+LNW+ L+NNRL + +G L L +L + N +P+++ L L N N
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 61 I--TSLDGLLRGLTKLQVFNMDFNQITMVRRD-------------EFQNLHNLDSISLQN 105
T + + K+ + + ++ D EFQ + S Q
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR-----SEQL 604
Query: 106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
N++++ N + +Y H T D G + +D+SYN ++ + +
Sbjct: 605 NRLSTRNP----CNITSRVYGGHTSPTF----DNNG--SMMFLDMSYNMLSGYIPK---- 650
Query: 166 NQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
++ + +F L L HN+I ++ + + GL+ LDLS NKL P L L +
Sbjct: 651 -EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 225 DISHNLLT-TLEETSK--TFLPA 244
D+S+N L+ + E + TF PA
Sbjct: 710 DLSNNNLSGPIPEMGQFETFPPA 732
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 122/311 (39%), Gaps = 72/311 (23%)
Query: 17 SLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 75
++ LG+LSKL+ L + N LE +P ++ + L+
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-----------------------VKTLE 466
Query: 76 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEF 134
+DFN +T N NL+ ISL NN++T + + L LA L LS+N +
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 135 LLDDIRGLKRLRTVDLSYNKINKFGT-------------------------RNEG-KNQV 168
+ ++ + L +DL+ N N GT +N+G K +
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFN--GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 584
Query: 169 QGVTNIFEL---------KLQHNEIENLDGALMGIH---------GLSRLDLSHNKLRTI 210
G N+ E +L N+ + G H + LD+S+N L
Sbjct: 585 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY 644
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL-TRLDKDFHGLPVLC 269
P + + L +L++ HN ++ L L L +S N L R+ + L +L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 270 KADLAHNNIKA 280
+ DL++NN+
Sbjct: 705 EIDLSNNNLSG 715
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 41/263 (15%)
Query: 3 TDLNWLFLNNNRLKS-LEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNR 60
T+LNW+ L+NNRL + +G L L +L + N +P+++ L L N N
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 61 I--TSLDGLLRGLTKLQVFNMDFNQITMVRRD-------------EFQNLHNLDSISLQN 105
T + + K+ + + ++ D EFQ + S Q
Sbjct: 547 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR-----SEQL 601
Query: 106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
N++++ N + +Y H T D G + +D+SYN ++ + +
Sbjct: 602 NRLSTRNP----CNITSRVYGGHTSPTF----DNNG--SMMFLDMSYNMLSGYIPK---- 647
Query: 166 NQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
++ + +F L L HN+I ++ + + GL+ LDLS NKL P L L +
Sbjct: 648 -EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 225 DISHNLLT-TLEETSK--TFLPA 244
D+S+N L+ + E + TF PA
Sbjct: 707 DLSNNNLSGPIPEMGQFETFPPA 729
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
L ++P+ I +Q+ LY +N+IT L+ G+ LT+L ++D NQ+T++ F L
Sbjct: 29 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 97 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT----VDLS 151
L +SL +NQ+ S+ + L L +++L +N + DI L R + +
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW-DCACSDILYLSRWISQHPGLVFG 145
Query: 152 YNKINKFGTRNEGKN-QVQGVT 172
Y ++ R G N V+ VT
Sbjct: 146 YLNLDPDSARCSGTNTPVRAVT 167
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
L+L +N++ LE G L++L L ++ NQL LP+ G
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------------G 80
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 126
+ LT+L +++ NQ+ + R F NL +L I L NN S + LYL
Sbjct: 81 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI--------LYL 132
Query: 127 SH 128
S
Sbjct: 133 SR 134
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
L+LN N L L ++ LS L++L + N+L +LP+++ QL Y +N +T+L
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 68 LRGLTKLQVFNMDFNQI 84
L LQ ++ N +
Sbjct: 312 FGNLCNLQFLGVEGNPL 328
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 87
L L + N L LP++I+ S L L ++NR+TSL L +L+ F N +T +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 88 RRDEFQNLHNLDSISLQNNQI 108
EF NL NL + ++ N +
Sbjct: 309 PW-EFGNLCNLQFLGVEGNPL 328
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 82 NQITMVRRDEF--QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 139
N++ M + ++ Q H LD L N QI ++++++ L LYL+ N LTE L +I
Sbjct: 211 NRMVMPKDSKYDDQLWHALD---LSNLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEI 266
Query: 140 RGLKRLRTVDLSYNKI 155
+ L LR +DLS+N++
Sbjct: 267 KNLSNLRVLDLSHNRL 282
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE- 235
L L + +I N+ + L+RL L+ N L + P + L +L++LD+SHN LT+L
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 236 ETSKTFLPALEELFVSHNSLTRLDKDFHGL 265
E F L+ + N +T L +F L
Sbjct: 288 ELGSCF--QLKYFYFFDNMVTTLPWEFGNL 315
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
E +NL NL + L +N++TS+ + L +L Y Y N +T
Sbjct: 265 EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT 306
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI 45
L++L L L++NRL SL +LG+ +L+ N + LP +
Sbjct: 269 LSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF 312
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 33 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDE 91
++ L ++P+ I +Q+ LY N +IT L+ G+ LT+L N+ NQ+T +
Sbjct: 26 CQERSLASVPAGIPTTTQVLHLYIN--QITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 92 FQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHN 129
F L L ++L NQ+ S+ + L L ++YL +N
Sbjct: 84 FDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 63 SLDGLLRGL-TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTK 120
SL + G+ T QV ++ NQIT + F +L L ++L NQ+T++ + LTK
Sbjct: 30 SLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
L +L L NQL + LK L + L
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 8 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 66
L L N++ LE G +L++L L + NQL ALP G
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPV----------------------G 82
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ LTKL + NQ+ + F NL +L I L NN
Sbjct: 83 VFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 98/377 (25%), Positives = 162/377 (42%), Gaps = 79/377 (20%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L L +N+ + + G + L+ L L+ N + L D+ + L L ++N++
Sbjct: 41 LATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKL 97
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T+LD + LTKL N D N++T + QN +T +N + + LT++
Sbjct: 98 TNLD--VTPLTKLTYLNCDTNKLTKLDVS-------------QNPLLTYLNCARNTLTEI 142
Query: 122 AYLYLSHN-QLTEFLLD----------DIRGLKRLRTVDLSYNKINKFG-TRNEGKNQVQ 169
+SHN QLTE LD D+ +L T+D S+NKI + ++N+ N++
Sbjct: 143 D---VSHNTQLTE--LDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLN 197
Query: 170 GVTN-IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
TN I +L L N L+ LD S NKL I D L L D S
Sbjct: 198 CDTNNITKLDLNQN------------IQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSV 242
Query: 229 NLLTTLEETSKTFLPALE-------ELFVSHNS-LTRLDKDFHGLPVLCKADLAHNN-IK 279
N LT L+ ++ + L L E+ ++HN+ L + G + + D+ HN +
Sbjct: 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAE--GCRKIKELDVTHNTQLY 300
Query: 280 AINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD--------SMRAV---------IDAM 322
++ Q A T+ + + +YL + D S+ V + +
Sbjct: 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKI 360
Query: 323 ETINNNTKIHGETICQP 339
+NNN + G+TI P
Sbjct: 361 PALNNNFEAEGQTITMP 377
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 38 LEALPSDIQLFSQLGSLYANNN---RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L+ +P DI L + L N+N RI+S DGL L L + NQ+T + + F+
Sbjct: 20 LKEIPRDIPLHTT--ELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 95 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
++ + L N+I + N GL +L L L NQ++ + L L +++L+ N
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 154 KIN 156
N
Sbjct: 137 PFN 139
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 30/113 (26%)
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L L L NQLT G++ N +G ++I EL
Sbjct: 53 LPHLVKLELKRNQLT--------GIE---------------------PNAFEGASHIQEL 83
Query: 178 KLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+L N+I+ + + +G+H L L+L N++ + P F L+SL L+++ N
Sbjct: 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 171 VTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+ ++ +L+L+ N++ ++ A G + L L NK++ IS F+GL LK L++ N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 230 LLTTLEETSKTFLPALEELFVSHNSL 255
++ + S L +L L ++ N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 29/132 (21%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183
LYL NQ T + ++ K L +DLS N+I+ Q +N+ +L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSN--------QSFSNMTQLL----- 81
Query: 184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
L LS+N+LR I P F GL SL++L + N ++ + E + L
Sbjct: 82 ---------------TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 244 ALEELFVSHNSL 255
AL L + N L
Sbjct: 127 ALSHLAIGANPL 138
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 31 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRR 89
L ++ NQ +P ++ + L + +NNRI++L +T+L + +N++ +
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 90 DEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
F L +L +SL N I+ + + + L+ L++L + N L
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 35/144 (24%)
Query: 66 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYL 124
G+ R +T+L +D NQ T+V + E N +L I L NN+I+++ N S S +T+L
Sbjct: 28 GIPRDVTELY---LDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL-- 81
Query: 125 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184
T+ LSYN++ R G+ ++ L L N+I
Sbjct: 82 ----------------------TLILSYNRLRCIPPRT-----FDGLKSLRLLSLHGNDI 114
Query: 185 ENL-DGALMGIHGLSRLDLSHNKL 207
+ +GA + LS L + N L
Sbjct: 115 SVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 27/120 (22%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 97
L+ LP I + LY + N Q T+V + E N +
Sbjct: 22 LKVLPKGIP--RDVTELYLDGN-----------------------QFTLVPK-ELSNYKH 55
Query: 98 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
L I L NN+I+++ N S S +T+L L LS+N+L GLK LR + L N I+
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 125/303 (41%), Gaps = 75/303 (24%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG-----LTKLA 122
RGL+ L + +D+NQ + F L NL+ ++L Q + LSG LT L
Sbjct: 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL--TQCNLDGAVLSGNFFKPLTSLE 132
Query: 123 YLYLSHN-----QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L N Q F L+ ++R +DL++NK+ + Q + T L
Sbjct: 133 MLVLRDNNIKKIQPASFFLN----MRRFHVLDLTFNKVKSICEEDLLNFQGKHFT---LL 185
Query: 178 KLQHNEIENLDGALMGIH---------GLSRLDLSHN-----------------KLRTI- 210
+L +++++ +G ++ LDLS N K++++
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 211 -----------------SPDDFI--GLDS--LKMLDISHNLLTTLEETSKTFLPALEELF 249
PD+F GL++ +K D+S + + L ++ + LE+L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305
Query: 250 VSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
++ N + ++D + F GL L + L N +K++ + + L S +I+L NP
Sbjct: 306 LAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDR-------LTSLQKIWLHTNP 358
Query: 309 VLC 311
C
Sbjct: 359 WDC 361
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 12 NNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLR 69
N RL S+ G + Q L + NQ+ L P L LY N+N++T++ G+
Sbjct: 21 NIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 70 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
LT+L +++ N + + R F NL +L I L NN
Sbjct: 79 KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 108/250 (43%), Gaps = 13/250 (5%)
Query: 43 SDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102
+ Q F+QL L + L ++GL L+ + N + + N +L +
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 103 LQNNQITSMNSSLSGLTKLAYLY---LSHNQL--TEFLLDDIRGLKRLRTVDLSYNKINK 157
++ N + ++ + L KL L LSHN + ++ ++ L L+T++LS+N+
Sbjct: 329 IRGN-VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNE--P 385
Query: 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
G +++ + + + +L I +H L L+L++ L T + G
Sbjct: 386 LGLQSQAFKECPQL-ELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAG 444
Query: 218 LDSLKMLDISHNLLTTLEETSKTFLP---ALEELFVSHNSLTRLDKD-FHGLPVLCKADL 273
L L+ L++ N T L +LE L +S L +D+ FH L + DL
Sbjct: 445 LPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDL 504
Query: 274 AHNNIKAINI 283
+HN++ +I
Sbjct: 505 SHNSLTCDSI 514
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 129
L L ++ QI + D FQ+ H L ++ L N + M +SL+G L +L+L
Sbjct: 53 LMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQT 112
Query: 130 QLTEFLLDDIRGLKRLRTVDLSYNKINK 157
++ + L+ L ++ L N I+
Sbjct: 113 GISNLEFIPVHNLENLESLYLGSNHISS 140
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 97/250 (38%), Gaps = 51/250 (20%)
Query: 24 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 83
++LQ L + L+ LPS ++ + L L + N L Q+ +F
Sbjct: 273 CFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQL---------CQISAANFPS 323
Query: 84 IT-MVRRDEFQNLH----------NLDSISLQNNQITSMNSS---LSGLTKLAYLYLSHN 129
+T + R + LH NL ++ L +N I + + L L+ L L LSHN
Sbjct: 324 LTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN 383
Query: 130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN----QVQGVTNIF---------- 175
+ + +L +DL++ +++ ++ +N QV +T F
Sbjct: 384 EPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLA 443
Query: 176 ------ELKLQHNEIENLDGA------LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
L L+ N + DG L + L L LS L +I F L +
Sbjct: 444 GLPVLRHLNLKGNHFQ--DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSH 501
Query: 224 LDISHNLLTT 233
+D+SHN LT
Sbjct: 502 VDLSHNSLTC 511
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 16/222 (7%)
Query: 20 GQLGTLSKLQLLVIEQNQLEAL-PSDIQL--FSQLGSLYANNNRITSLDG-LLRGLTKLQ 75
G L L LQ L + N +EA +QL S L +L ++N L + +L+
Sbjct: 341 GCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLE 400
Query: 76 VFNMDFNQITM-VRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTE 133
+ ++ F ++ + + FQNLH L ++L + + N L +GL L +L L N +
Sbjct: 401 LLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQD 460
Query: 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI--ENLDG-- 189
+ L+ + ++++ ++ G + + + + + L HN + +++D
Sbjct: 461 GTITKTNLLQTVGSLEVLI--LSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLS 518
Query: 190 ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
L GI+ L+L+ N + ISP L +++SHN L
Sbjct: 519 HLKGIY----LNLAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
L++S N + + D + L L++L ISHN + L+ + F LE L +SHN L ++
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI- 84
Query: 260 KDFHGLPVLCKADLAHNNIKAINI--QLALKTQCQIFGLNSTLRIYLEGNPVL 310
H L DL+ N A+ I + +Q + GL++T +LE + VL
Sbjct: 85 -SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT---HLEKSSVL 133
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 33/116 (28%)
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
K L +S N ++E DI L +LR + +S
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIIS---------------------------- 53
Query: 180 QHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
HN I+ LD ++ L LDLSHNKL IS + LK LD+S N L
Sbjct: 54 -HNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDAL 105
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 54
L++N++KS+ Q+ L LQ L + NQL+++P I F +L SL
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI--FDRLTSL 470
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS 203
++++DLS N+I + +Q N+ L L N I ++ + + L LDLS
Sbjct: 54 VKSLDLSNNRITYISNSD-----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS-KTFLPALEELFVSH-NSLTRLD-K 260
+N L +S F L SL L++ N TL ETS + L L+ L V + ++ T++ K
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 261 DFHGLPVL 268
DF GL L
Sbjct: 169 DFAGLTFL 176
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ LDLS+N++ IS D +L+ L ++ N + T+EE S + L +LE L +S+N L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 256 TRLDKDF 262
+ L +
Sbjct: 113 SNLSSSW 119
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 98 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ S+ L NN+IT + NS L L L L+ N + D L L +DLSYN ++
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDL----SHNKLRTISP 212
N + + ++++ L L N + L + H L++L + + + I
Sbjct: 114 -----NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTKIQR 167
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETS 238
DF GL L+ L+I + L + E S
Sbjct: 168 KDFAGLTFLEELEIDASDLQSYEPKS 193
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 111/264 (42%), Gaps = 32/264 (12%)
Query: 24 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 83
+++Q L + L LPS I+ + L L N N F+Q
Sbjct: 275 CFTRVQELDLTAAHLNGLPSGIEGMNSLKKLVLNAN--------------------SFDQ 314
Query: 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL--TEFLLDDIRG 141
+ + F +L +L I ++ L L L L LSH+ + ++ ++
Sbjct: 315 LCQINAASFPSLRDL-YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKN 373
Query: 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLD 201
L+ L+ ++LSYN+ G ++ + + + ++ H ++ +H L L+
Sbjct: 374 LRHLQYLNLSYNE--PLGLEDQAFKECPQL-ELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 202 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT----FLPALEELFVSHNSLTR 257
LSH L T + GL L+ L++ N SKT + +LE L +S +L
Sbjct: 431 LSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQD-GSISKTNLLQMVGSLEILILSSCNLLS 489
Query: 258 LDKD-FHGLPVLCKADLAHNNIKA 280
+D+ FHGL + DL+HN++
Sbjct: 490 IDQQAFHGLRNVNHLDLSHNSLTG 513
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 83 QITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 141
QI V D FQ+ H L++I L N + M +SL+G L +L+L+ ++ +
Sbjct: 67 QINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHN 126
Query: 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD----GALMGIHGL 197
L+ L ++ L N I+ Q N+ L Q+N I + +L L
Sbjct: 127 LENLESLHLGSNHISSINLPENFPTQ-----NLKVLDFQNNAIHYISRKDTNSLEQATNL 181
Query: 198 SRLDLSHNKLRTISPDDFIG 217
S L+ + N ++ I P FI
Sbjct: 182 S-LNFNGNDIKGIEPGAFIS 200
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDL+ ++ + D F L + ++ N L + ETS T L+ LF++ ++ L+
Sbjct: 61 LDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLE 120
Query: 260 -KDFHGLPVLCKADLAHNNIKAINIQLALKTQ 290
H L L L N+I +IN+ TQ
Sbjct: 121 FIPVHNLENLESLHLGSNHISSINLPENFPTQ 152
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS 203
++++DLS N+I + +Q N+ L L N I ++ + + L LDLS
Sbjct: 28 VKSLDLSNNRITYISNSD-----LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS-KTFLPALEELFVSH-NSLTRLD-K 260
+N L +S F L SL L++ N TL ETS + L L+ L V + ++ T++ K
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 261 DFHGLPVL 268
DF GL L
Sbjct: 143 DFAGLTFL 150
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ LDLS+N++ IS D +L+ L ++ N + T+EE S + L +LE L +S+N L
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 256 TRLDKDF 262
+ L +
Sbjct: 87 SNLSSSW 93
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 98 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ S+ L NN+IT + NS L L L L+ N + D L L +DLSYN ++
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDL----SHNKLRTISP 212
N + + ++++ L L N + L + H L++L + + + I
Sbjct: 88 -----NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSH-LTKLQILRVGNMDTFTKIQR 141
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETS 238
DF GL L+ L+I + L + E S
Sbjct: 142 KDFAGLTFLEELEIDASDLQSYEPKS 167
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 32/212 (15%)
Query: 66 GLLRGLTKLQV--FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAY 123
+ GL ++ V N+ + + + F L + L ++ + S L GL+ L
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKK 305
Query: 124 LYLSHNQLT-------------------------EFLLDDIRGLKRLRTVDLSYNKINKF 158
L LS N+ E + L+ LR +DLS++ I
Sbjct: 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-- 363
Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTI-SPDDFI 216
T + Q++ ++++ L L +NE +L A L LDL+ +L+ + F
Sbjct: 364 -TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422
Query: 217 GLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
L LK+L++SH+LL E LPAL+ L
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 11/150 (7%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN--QITSMNSSLSGLTKLAYLY 125
LR L+ LQ N+ +N+ ++ + F+ L+ + L ++ S L L L
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 126 LSHNQL---TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
LSH+ L +E L D GL L+ ++L N K + Q G I L L
Sbjct: 432 LSHSLLDISSEQLFD---GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI--LVLSFC 486
Query: 183 EIENLD-GALMGIHGLSRLDLSHNKLRTIS 211
++ ++D A + ++ +DLSHN+L + S
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA--YLY 125
L+ L +L++ + F ++ + + F +L ++ + L +N++TS SS+ L+ L YL
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS--SSIEALSHLKGIYLN 529
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
L+ N ++ L + L + RT++L N ++
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 129
L L ++ QI + D FQ+ H LD++ L N + M ++LSG L +L+
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 130 QLTEFLLDDIRGLKRLRTVDLSYNKIN 156
++ + K L ++ L N I+
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHIS 142
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 30/238 (12%)
Query: 93 QNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
Q+ N+ + L N ++ ++++ L+ TKL L LS N L E L D+ L LRT+DL+
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLN 88
Query: 152 YNKINKF------GTRNEGKNQV--------QGVTNIFELKLQHNEIENLDGALMGIHG- 196
N + + T + N + QG NI+ L +N+I L G
Sbjct: 89 NNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSR 145
Query: 197 LSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ LDL N++ T++ + D+L+ L++ +N + ++ + L+ L +S N L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKL 203
Query: 256 TRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN------STLRIYLEGN 307
+ +F + L +N + I L + F L TLR + N
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 12/140 (8%)
Query: 11 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRG 70
+N+ ++SL G + + L+ L + NQ+ L S ++ ++L L N NR+ +L+G+
Sbjct: 49 DNSNIQSLAG-MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA 106
Query: 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ 130
L +D N++ D +L NL+ +S++NN++ S+ L L+KL L L N+
Sbjct: 107 C--LSRLFLDNNELR--DTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNE 161
Query: 131 LTEFLLDDIRGLKRLRTVDL 150
+T + GL RL+ V+
Sbjct: 162 IT-----NTGGLTRLKKVNW 176
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
LT L L +N NRLK+L G L L ++ N+L S I L L L NN++
Sbjct: 84 LTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDTDSLIHL-KNLEILSIRNNKL 140
Query: 62 TSLDGLLRGLTKLQVFNMDFNQIT 85
S+ +L L+KL+V ++ N+IT
Sbjct: 141 KSI-VMLGFLSKLEVLDLHGNEIT 163
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 24/109 (22%)
Query: 168 VQGVTNIFELKLQHNEIENLD---------------GALMGIHG-----LSRLDLSHNKL 207
+Q TN+ EL L HN+I +L L ++G LSRL L +N+L
Sbjct: 59 MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL 118
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
R D I L +L++L I +N L ++ FL LE L + N +T
Sbjct: 119 RDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 103/238 (43%), Gaps = 30/238 (12%)
Query: 93 QNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
Q+ N+ + L N ++ ++++ L+ TKL L LS N L E L D+ L LRT+DL+
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLN 88
Query: 152 YNKINKF------GTRNEGKNQV--------QGVTNIFELKLQHNEIENLDGALMGIHG- 196
N + + T + N + QG NI+ L +N+I L G
Sbjct: 89 NNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSR 145
Query: 197 LSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ LDL N++ T++ + D+L+ L++ +N + ++ + L+ L +S N L
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKL 203
Query: 256 TRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN------STLRIYLEGN 307
+ +F + L +N + I L + F L TLR + N
Sbjct: 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
++ LDLSHN+LR + P L L++L S N L ++ + LP L+EL + +N L
Sbjct: 465 VTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVAN--LPRLQELLLCNNRL 520
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
++ LDLSHN+LR + P L L++L S N L ++ + LP L+EL + +N L
Sbjct: 465 VTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVAN--LPRLQELLLCNNRL 520
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 35/130 (26%)
Query: 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160
+ N +T + L TK L LS N ++E + DI L LR
Sbjct: 36 VDYSNRNLTHVPKDLPPRTK--ALSLSQNSISELRMPDISFLSELRV------------- 80
Query: 161 RNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
L+L HN I +LD + L LD+SHN+L+ IS +
Sbjct: 81 ----------------LRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS---CCPMA 121
Query: 220 SLKMLDISHN 229
SL+ LD+S N
Sbjct: 122 SLRHLDLSFN 131
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN------ 253
L LS N + + D L L++L +SHN + +L+ F LE L VSHN
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 254 -----SLTRLD---KDFHGLPVLCK 270
SL LD DF LPV CK
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPV-CK 140
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 54
L+NNR+ S+ + L LQ L + NQL+++P + F +L SL
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV--FDRLTSL 499
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 35 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASL 117
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 19 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKL 74
+G +LS L L++ N +++L + FS L SL A + SL+ G L L
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 128
Query: 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 37 LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 91
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 92 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------- 142
Query: 245 LEELFVSHNSLTRLD 259
L E F + +L LD
Sbjct: 143 LPEYFSNLTNLEHLD 157
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 34 LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASL 116
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 19 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKL 74
+G +LS L L++ N +++L + FS L SL A + SL+ G L L
Sbjct: 70 DGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 127
Query: 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 128 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 36 LSWNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 90
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------- 141
Query: 245 LEELFVSHNSLTRLD 259
L E F + +L LD
Sbjct: 142 LPEYFSNLTNLEHLD 156
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 34 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASL 116
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
+L L L+ ++++E G +LS L L++ N +++L + FS L SL A
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVA 108
Query: 57 NNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ SL+ G L L+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 36 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 90
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 91 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------- 141
Query: 245 LEELFVSHNSLTRLD 259
L E F + +L LD
Sbjct: 142 LPEYFSNLTNLEHLD 156
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASL 115
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
+L L L+ ++++E G +LS L L++ N +++L + FS L SL A
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVA 107
Query: 57 NNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ SL+ G L L+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 89
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
>pdb|3PJE|A Chain A, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
pdb|3PJE|B Chain B, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
Length = 270
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 13 NRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT 72
R++ QLG+ LQ V E ++ +F++LG ++ DG + ++
Sbjct: 46 GRVEEFAAQLGSDIVLQCDVAEDASID------TMFAELGKVWPK------FDGFVHSIS 93
Query: 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISL--QNNQITSMNSSLSGLTKLAYL 124
+D + + V R+ F+ H++ S S SM + S L L+YL
Sbjct: 94 FAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYL 147
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 1/129 (0%)
Query: 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
+ L ++ RLK+ G+L SKLQ + E +L+A ++ S+L +Y R+
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 66
Query: 63 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA 122
+ G L +KLQ + ++ E L I + ++ + L +KL
Sbjct: 67 AAVGELPEKSKLQEIYQELTRLKAA-VGELPEKSKLQEIYQELTELKAAVGELPEKSKLQ 125
Query: 123 YLYLSHNQL 131
+Y QL
Sbjct: 126 EIYQELTQL 134
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
LDLS N LR + F L++LD+S + T+E+ + L L L ++ N + L
Sbjct: 35 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 260 -KDFHGLPVLCKADLAHNNIKAI 281
F GL L K N+ ++
Sbjct: 95 LGAFSGLSSLQKLVALETNLASL 117
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 19 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKL 74
+G +LS L L++ N +++L + FS L SL A + SL+ G L L
Sbjct: 71 DGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTL 128
Query: 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM 111
+ N+ N I + E F NL NL+ + L +N+I S+
Sbjct: 129 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
LS N L L+ +DLS +I T +G Q ++++ L L N I+
Sbjct: 37 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---TIEDGA--YQSLSHLSTLILTGNPIQ 91
Query: 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244
+L GA G+ L +L L ++ L +LK L+++HNL+ + +
Sbjct: 92 SLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFK--------- 142
Query: 245 LEELFVSHNSLTRLD 259
L E F + +L LD
Sbjct: 143 LPEYFSNLTNLEHLD 157
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
IENL L +D S N++R + D F L LK L +++N + + E LP
Sbjct: 34 IENLGATL---DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88
Query: 244 ALEELFVSHNSLTRL 258
L EL +++NSL L
Sbjct: 89 DLTELILTNNSLVEL 103
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 104/263 (39%), Gaps = 55/263 (20%)
Query: 28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 87
L+ LV N L LP +L L SL +NN + +L L L L V N ++ +
Sbjct: 93 LESLVASCNSLTELP---ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 149
Query: 88 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
+ F + ++D+ SL+ ++ + SL ++ +NQL E L +++ L L
Sbjct: 150 QNSSFLKIIDVDNNSLK--KLPDLPPSLE------FIAAGNNQLEE--LPELQNLPFLTA 199
Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
+ N + K + NI E + E++NL L I+ +N L
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILE---ELPELQNL-PFLTTIYA------DNNLL 249
Query: 208 RTIS--PDDFIGLD--------------SLKMLDISHNLLTTLEETSKTFL--------- 242
+T+ P L+ SL LD+S N+ + L E
Sbjct: 250 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309
Query: 243 -------PALEELFVSHNSLTRL 258
P+LEEL VS+N L L
Sbjct: 310 RSLCDLPPSLEELNVSNNKLIEL 332
>pdb|4FS7|A Chain A, Crystal Structure Of A Hypothetical Leucine Rich Repeat
Protein (Bacova_04585) From Bacteroides Ovatus Atcc 8483
At 1.19 A Resolution
Length = 394
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQI---TSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 138
+ T + + F +L+SIS+QNN++ S+ + SGL K+ Y + + T +
Sbjct: 239 DSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSS 298
Query: 139 IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLS 198
+ +K L +V G+ + T++ + L + E + G LS
Sbjct: 299 LTEVKLLDSVKFI------------GEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLS 346
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
++ + LR I + F G +LK +++ L
Sbjct: 347 NINFPLS-LRKIGANAFQGCINLKKVELPKRL 377
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
G+ +L L L N +K +E L+ L I NQ+ +L S I+ L LY +NN+
Sbjct: 69 GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNK 127
Query: 61 ITSLDGL--LRGLTKLQ 75
IT+ + L L KL+
Sbjct: 128 ITNWGEIDKLAALDKLE 144
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS-------LQNNQITSMNSSLSGLTK 120
L G+ L++ ++ N I + + NLD+++ + NQI S+ S + L
Sbjct: 67 LSGMENLRILSLGRNLI--------KKIENLDAVADTLEELWISYNQIASL-SGIEKLVN 117
Query: 121 LAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 153
L LY+S+N++T + +D + L +L + L+ N
Sbjct: 118 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
G+ +L L L N +K +E L+ L I NQ+ +L S I+ L LY +NN+
Sbjct: 68 GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNK 126
Query: 61 ITSLDGL--LRGLTKLQ--------VFNMDFNQ--------ITMVRRDEFQNLHNLDSIS 102
IT+ + L L KL+ ++N D+ + I +V+R NL LD +
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEYRIEVVKR--LPNLKKLDGMP 183
Query: 103 LQNNQITSMNSSLSG 117
+ ++ N + G
Sbjct: 184 VDVDEREQANVARGG 198
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 17/94 (18%)
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS-------LQNNQITSMNSSLSGLTK 120
L G+ L++ ++ N I + + NLD+++ + NQI S+ S + L
Sbjct: 66 LSGMENLRILSLGRNLI--------KKIENLDAVADTLEELWISYNQIASL-SGIEKLVN 116
Query: 121 LAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 153
L LY+S+N++T + +D + L +L + L+ N
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,101,380
Number of Sequences: 62578
Number of extensions: 372639
Number of successful extensions: 1909
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 423
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)