Query psy4257
Match_columns 419
No_of_seqs 464 out of 4302
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 20:46:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 100.0 4.7E-42 1E-46 318.3 3.4 308 5-325 127-467 (873)
2 KOG4194|consensus 100.0 1.1E-38 2.4E-43 295.9 2.7 299 1-311 100-430 (873)
3 PLN00113 leucine-rich repeat r 100.0 1.9E-31 4E-36 284.9 20.8 280 2-281 139-443 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.4E-31 5.2E-36 284.1 20.8 301 2-314 259-588 (968)
5 KOG4237|consensus 100.0 7.4E-33 1.6E-37 246.5 1.2 321 8-341 51-386 (498)
6 KOG0444|consensus 100.0 2.9E-32 6.2E-37 255.4 -2.7 276 2-283 54-333 (1255)
7 KOG0472|consensus 100.0 6.4E-32 1.4E-36 241.0 -6.6 199 4-210 92-290 (565)
8 KOG0444|consensus 100.0 1E-30 2.2E-35 245.1 -1.4 292 2-310 77-375 (1255)
9 KOG0472|consensus 100.0 2.7E-31 5.9E-36 237.0 -5.1 295 4-311 161-542 (565)
10 PRK15387 E3 ubiquitin-protein 99.9 5.7E-25 1.2E-29 220.7 17.7 258 4-311 202-459 (788)
11 PRK15387 E3 ubiquitin-protein 99.9 1.9E-24 4.1E-29 216.9 16.7 244 3-286 222-465 (788)
12 PRK15370 E3 ubiquitin-protein 99.9 2.5E-23 5.5E-28 210.0 13.2 251 27-311 179-429 (754)
13 KOG0618|consensus 99.9 3.1E-25 6.7E-30 216.9 -1.0 286 8-310 183-489 (1081)
14 PRK15370 E3 ubiquitin-protein 99.9 8.5E-23 1.8E-27 206.3 14.0 248 3-280 178-429 (754)
15 PLN03210 Resistant to P. syrin 99.9 1.6E-21 3.4E-26 209.6 22.5 284 5-308 591-904 (1153)
16 KOG0618|consensus 99.9 1.4E-24 3E-29 212.4 -2.6 265 5-276 243-510 (1081)
17 PLN03210 Resistant to P. syrin 99.9 7.3E-21 1.6E-25 204.5 22.3 283 1-308 556-880 (1153)
18 KOG4237|consensus 99.9 2.9E-24 6.3E-29 191.8 -4.5 272 4-279 68-359 (498)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.1E-21 2.3E-26 183.8 3.8 276 7-309 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 9.3E-21 2E-25 177.4 3.5 252 2-277 22-318 (319)
21 KOG0617|consensus 99.7 3.5E-20 7.6E-25 147.9 -4.2 160 22-212 29-190 (264)
22 KOG0617|consensus 99.7 5.5E-20 1.2E-24 146.7 -5.5 159 2-161 32-191 (264)
23 COG4886 Leucine-rich repeat (L 99.5 1.5E-14 3.3E-19 139.3 8.0 199 30-238 97-296 (394)
24 COG4886 Leucine-rich repeat (L 99.5 4.7E-14 1E-18 135.9 8.7 196 53-259 97-293 (394)
25 KOG0532|consensus 99.5 1.4E-15 3.1E-20 142.6 -2.1 213 7-230 54-271 (722)
26 PF14580 LRR_9: Leucine-rich r 99.5 4.8E-14 1E-18 117.4 5.1 139 10-151 4-148 (175)
27 KOG1909|consensus 99.5 1E-14 2.2E-19 129.4 0.6 165 67-232 87-283 (382)
28 KOG0532|consensus 99.4 6.1E-15 1.3E-19 138.4 -2.0 193 3-205 75-270 (722)
29 PF14580 LRR_9: Leucine-rich r 99.4 9.3E-14 2E-18 115.7 4.6 104 174-279 21-126 (175)
30 KOG3207|consensus 99.4 3.1E-14 6.8E-19 129.7 1.7 207 70-280 119-340 (505)
31 KOG0531|consensus 99.4 1.9E-14 4.1E-19 139.1 -0.5 246 25-311 71-319 (414)
32 KOG1259|consensus 99.4 3.8E-14 8.1E-19 123.4 0.1 223 25-259 181-415 (490)
33 KOG0531|consensus 99.4 3.1E-14 6.7E-19 137.6 -0.9 196 2-209 71-269 (414)
34 KOG1259|consensus 99.4 8.6E-14 1.9E-18 121.1 1.5 133 142-284 283-417 (490)
35 KOG1909|consensus 99.4 6.1E-14 1.3E-18 124.5 -0.9 243 47-309 28-310 (382)
36 KOG3207|consensus 99.4 1.5E-13 3.2E-18 125.4 1.1 204 25-232 120-339 (505)
37 KOG1859|consensus 99.2 1.8E-13 3.9E-18 131.9 -6.2 190 112-314 102-296 (1096)
38 KOG4658|consensus 99.1 1.3E-10 2.9E-15 120.2 6.5 291 3-307 545-856 (889)
39 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.4E-15 80.1 3.4 59 196-254 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 99.0 3.3E-10 7E-15 77.8 4.0 60 219-278 1-61 (61)
41 PLN03150 hypothetical protein; 99.0 1.5E-09 3.3E-14 109.9 8.5 111 197-313 420-531 (623)
42 KOG4658|consensus 98.9 6.4E-10 1.4E-14 115.2 4.3 130 24-154 521-653 (889)
43 KOG1859|consensus 98.9 4.5E-11 9.8E-16 115.7 -6.0 176 2-188 108-295 (1096)
44 PLN03150 hypothetical protein; 98.8 9E-09 1.9E-13 104.3 8.4 106 73-183 419-526 (623)
45 COG5238 RNA1 Ran GTPase-activa 98.8 2.5E-09 5.3E-14 92.4 1.4 133 25-157 29-199 (388)
46 KOG4579|consensus 98.7 6.5E-10 1.4E-14 86.1 -2.4 133 173-314 28-163 (177)
47 KOG2982|consensus 98.7 3.4E-09 7.4E-14 92.7 1.2 106 27-132 46-159 (418)
48 KOG2120|consensus 98.6 1.2E-09 2.6E-14 95.5 -3.8 174 27-205 186-373 (419)
49 KOG1644|consensus 98.6 3.8E-08 8.2E-13 81.6 5.1 125 28-154 21-151 (233)
50 KOG2982|consensus 98.6 6.1E-09 1.3E-13 91.2 0.2 197 73-280 46-263 (418)
51 KOG1644|consensus 98.6 1.1E-07 2.3E-12 78.9 6.1 108 195-308 42-151 (233)
52 KOG2120|consensus 98.6 2.5E-09 5.4E-14 93.6 -3.8 176 50-229 186-373 (419)
53 KOG4579|consensus 98.5 5.7E-09 1.2E-13 81.0 -2.6 110 27-137 28-141 (177)
54 COG5238 RNA1 Ran GTPase-activa 98.4 2.8E-08 6E-13 86.1 -0.8 197 116-313 89-319 (388)
55 PF12799 LRR_4: Leucine Rich r 98.3 4.6E-07 1E-11 57.0 3.3 39 244-282 2-40 (44)
56 PF12799 LRR_4: Leucine Rich r 98.3 6.2E-07 1.3E-11 56.4 3.1 38 4-41 2-39 (44)
57 PRK15386 type III secretion pr 98.1 8.7E-06 1.9E-10 76.5 8.5 136 68-230 48-188 (426)
58 KOG3665|consensus 98.1 1.3E-06 2.9E-11 88.6 2.9 81 25-106 147-230 (699)
59 PRK15386 type III secretion pr 98.1 2.6E-05 5.6E-10 73.4 10.7 139 45-206 48-188 (426)
60 PF13306 LRR_5: Leucine rich r 98.0 1.9E-05 4E-10 63.1 7.2 13 214-226 76-88 (129)
61 KOG2123|consensus 98.0 3.2E-07 7E-12 79.8 -3.6 98 49-149 19-123 (388)
62 PF13306 LRR_5: Leucine rich r 98.0 3.1E-05 6.7E-10 61.8 7.9 37 68-105 8-44 (129)
63 KOG2123|consensus 98.0 2.5E-07 5.4E-12 80.5 -4.7 105 71-178 18-123 (388)
64 TIGR00864 PCC polycystin catio 97.9 8.6E-06 1.9E-10 91.0 5.0 62 272-340 1-62 (2740)
65 KOG4341|consensus 97.9 6.9E-07 1.5E-11 82.0 -4.0 112 192-309 317-438 (483)
66 KOG3665|consensus 97.9 8.1E-06 1.8E-10 83.0 3.1 136 49-185 122-263 (699)
67 KOG2739|consensus 97.7 9.5E-06 2.1E-10 70.4 1.0 84 25-109 42-129 (260)
68 KOG2739|consensus 97.6 2.6E-05 5.5E-10 67.8 2.1 104 2-106 42-153 (260)
69 KOG4341|consensus 97.6 9.2E-06 2E-10 74.8 -1.0 59 218-276 319-382 (483)
70 KOG4308|consensus 97.3 2.9E-06 6.2E-11 82.6 -8.7 181 5-186 89-304 (478)
71 smart00082 LRRCT Leucine rich 96.9 0.0008 1.7E-08 43.8 2.5 34 307-341 1-34 (51)
72 KOG1947|consensus 96.8 0.00034 7.3E-09 69.3 0.2 33 245-277 403-438 (482)
73 KOG0473|consensus 96.5 0.00013 2.8E-09 62.3 -4.3 88 21-109 37-124 (326)
74 PF00560 LRR_1: Leucine Rich R 96.3 0.0015 3.3E-08 34.1 0.7 17 28-44 2-18 (22)
75 KOG1947|consensus 96.3 0.00078 1.7E-08 66.7 -1.1 82 216-311 359-441 (482)
76 PF00560 LRR_1: Leucine Rich R 96.0 0.0033 7.2E-08 32.8 1.2 15 245-259 2-16 (22)
77 KOG4308|consensus 96.0 8.1E-05 1.8E-09 72.6 -9.4 181 28-209 89-304 (478)
78 KOG0473|consensus 95.5 0.00052 1.1E-08 58.7 -5.2 94 39-133 31-125 (326)
79 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.3E-07 28.6 1.1 12 28-39 3-14 (17)
80 PF13504 LRR_7: Leucine rich r 95.0 0.015 3.2E-07 28.1 1.2 10 246-255 4-13 (17)
81 smart00370 LRR Leucine-rich re 93.9 0.052 1.1E-06 29.4 2.1 20 220-239 3-22 (26)
82 smart00369 LRR_TYP Leucine-ric 93.9 0.052 1.1E-06 29.4 2.1 20 220-239 3-22 (26)
83 smart00369 LRR_TYP Leucine-ric 93.7 0.069 1.5E-06 28.9 2.3 21 72-92 2-22 (26)
84 smart00370 LRR Leucine-rich re 93.7 0.069 1.5E-06 28.9 2.3 21 72-92 2-22 (26)
85 KOG3864|consensus 93.4 0.017 3.7E-07 48.6 -0.7 81 72-152 101-185 (221)
86 KOG3864|consensus 88.7 0.11 2.5E-06 43.8 -0.3 79 50-128 102-185 (221)
87 smart00365 LRR_SD22 Leucine-ri 87.5 0.46 9.9E-06 25.8 1.7 16 3-18 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 86.8 0.17 3.6E-06 26.8 -0.3 16 72-87 2-17 (24)
89 smart00364 LRR_BAC Leucine-ric 85.5 0.54 1.2E-05 25.4 1.3 17 244-260 3-19 (26)
90 KOG3763|consensus 81.3 0.86 1.9E-05 44.5 1.7 35 219-253 218-254 (585)
91 KOG3763|consensus 80.1 1 2.2E-05 44.1 1.7 60 25-85 217-283 (585)
92 PF11921 DUF3439: Domain of un 80.0 2.8 6.1E-05 31.1 3.6 16 314-329 4-19 (122)
93 KOG1924|consensus 68.7 8.6 0.00019 39.3 4.9 9 268-276 408-416 (1102)
94 smart00368 LRR_RI Leucine rich 65.3 4.1 8.9E-05 22.4 1.2 14 73-86 3-16 (28)
95 KOG4242|consensus 61.7 55 0.0012 31.9 8.6 233 73-309 215-480 (553)
96 KOG4242|consensus 61.5 47 0.001 32.4 8.1 224 27-255 215-480 (553)
97 PRK13042 superantigen-like pro 54.2 16 0.00034 32.7 3.5 6 396-401 87-92 (291)
98 TIGR00864 PCC polycystin catio 40.1 18 0.00038 43.0 2.1 32 201-232 1-32 (2740)
99 PF05687 DUF822: Plant protein 32.3 2E+02 0.0043 23.1 6.1 23 302-324 33-56 (150)
100 smart00367 LRR_CC Leucine-rich 30.0 38 0.00082 17.9 1.4 11 266-276 2-12 (26)
No 1
>KOG4194|consensus
Probab=100.00 E-value=4.7e-42 Score=318.28 Aligned_cols=308 Identities=28% Similarity=0.425 Sum_probs=177.9
Q ss_pred CcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257 5 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81 (419)
Q Consensus 5 L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~ 81 (419)
|+.|+|.+|.|+++. +.+..++.|+.|||+.|.|++|+. .|..-.++++|+|++|+|+.+. +.|.++.+|..|.|++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr 206 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR 206 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence 455555555555443 334445555555555555554433 2444444555555555555443 3444444455555555
Q ss_pred CCCcccChhhhc------------------------CCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccCh
Q psy4257 82 NQITMVRRDEFQ------------------------NLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLL 136 (419)
Q Consensus 82 n~l~~~~~~~~~------------------------~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~ 136 (419)
|+|+.++...|. ++++|+.|.|..|.|..+. ..|..+.++++|+|..|+++....
T Consensus 207 NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~ 286 (873)
T KOG4194|consen 207 NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE 286 (873)
T ss_pred CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence 555555444444 4444444555555444442 344555555555555555555555
Q ss_pred hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccC
Q psy4257 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF 215 (419)
Q Consensus 137 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 215 (419)
+.+.+++.|+.|++++|.|..+... .+....+|++|+|+.|+|+.++ +.|..+..|++|+|++|.+..+...+|
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d-----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHID-----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred ccccccchhhhhccchhhhheeecc-----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence 5555555555666666655554332 4455566666666666666654 455556666666666666666666666
Q ss_pred CCCCCCcEEEccCCcCccc---CchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhccc
Q psy4257 216 IGLDSLKMLDISHNLLTTL---EETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQC 291 (419)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~ 291 (419)
.++++|++|||++|.+... ....|.++++|+.|.|.+|+|..|+ ++|.++.+|++|||.+|.|..|.+..+..
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~--- 438 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP--- 438 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc---
Confidence 6666666666666665532 2234556666666666666666666 45666666777777777666666654432
Q ss_pred ceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257 292 QIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI 325 (419)
Q Consensus 292 ~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~ 325 (419)
+ .|++|-+..-.+.|||++.|+..|+...
T Consensus 439 ----m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 439 ----M-ELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred ----c-hhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 3 5566666666678999999999999874
No 2
>KOG4194|consensus
Probab=100.00 E-value=1.1e-38 Score=295.89 Aligned_cols=299 Identities=28% Similarity=0.387 Sum_probs=209.6
Q ss_pred CCCCCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN 78 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~ 78 (419)
++++|+++++..|.++.+|.......+|+.|+|.+|.|+++. +.++.++.|+.|||+.|.|+.|+ ..|..-.++++|+
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 356777777777777777664444566777777777777663 35777777888888888888776 4566667888888
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
|++|.|+.+..+.|.++.+|..|.|++|+|+.+| ..|+++++|+.|+|..|+|.-...-.|.++++|+.|.|..|+|..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 8888888888888888888888888888888886 467778888888888888776556677888888888888887777
Q ss_pred ccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 236 (419)
Q Consensus 158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 236 (419)
+... .|-.+.++++|+|..|++.++. +++.++..|++|+|++|.|..+.++.+..+++|++|+|++|+|+.+++
T Consensus 260 L~DG-----~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 260 LDDG-----AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ccCc-----ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 6554 4556666777777777666664 455666666666666666666666666666666666666666666655
Q ss_pred hhcc------------------------CCCCCceEeCcCCccccc-C---ccCCCCCCcCEEecCCCcccccchhhhhh
Q psy4257 237 TSKT------------------------FLPALEELFVSHNSLTRL-D---KDFHGLPVLCKADLAHNNIKAINIQLALK 288 (419)
Q Consensus 237 ~~~~------------------------~l~~L~~L~L~~N~i~~l-~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (419)
..|. ++.+|+.|||++|.|+.. . ..|.++++|+.|++.+|+|+.|+...
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA--- 411 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA--- 411 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh---
Confidence 5554 445555555555555432 1 23566666666666666666666553
Q ss_pred cccceecCCcceeEEecCCcccc
Q psy4257 289 TQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 289 ~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
+.++++|+.|+|.+|++..
T Consensus 412 ----fsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 412 ----FSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred ----hccCcccceecCCCCccee
Confidence 4468888889998888754
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.98 E-value=1.9e-31 Score=284.93 Aligned_cols=280 Identities=25% Similarity=0.327 Sum_probs=172.0
Q ss_pred CCCCcEEeccccccc-ccccccccccccceeecccccCc-cCccccccccccceeecccccccC-chhhhcCCCCCCEEe
Q psy4257 2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFN 78 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~ 78 (419)
+++|++|+|++|.+. .++..+..+++|+.|+|++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|+.|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 567788888888776 45666777778888888877776 556677777777777777777764 566677777777777
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
+++|++.+..+..|.++++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 7777777766677777777777777777765 456666777777777777777766666666666677777777666553
Q ss_pred ccCCC-------------------CCCCcccCcccccEEEcCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcccCCC
Q psy4257 158 FGTRN-------------------EGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIG 217 (419)
Q Consensus 158 ~~~~~-------------------~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 217 (419)
..+.. .....+..+++|+.|++++|.+. .+|..+..+.+|+.|++++|.+.+..|..+..
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~ 378 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC
Confidence 32110 00112333444444444444443 23344444444555555555444444444444
Q ss_pred CCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCccccc
Q psy4257 218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAI 281 (419)
Q Consensus 218 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~ 281 (419)
+.+|+.|++++|.+.+..+..+..+++|+.|++++|++.+ +|..|..++.|+.|++++|.+.+.
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCc
Confidence 4444444444444444444445556666666666666654 445566666666666666666543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.4e-31 Score=284.08 Aligned_cols=301 Identities=23% Similarity=0.282 Sum_probs=203.5
Q ss_pred CCCCcEEeccccccc-ccccccccccccceeecccccCc-cCccccccccccceeecccccccC-chhhhcCCCCCCEEe
Q psy4257 2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFN 78 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~ 78 (419)
+++|++|++++|.+. .++..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+.+ ++..+..+++|+.|+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 566777777777765 44555666777777777777766 456666667777777777776664 455566666677777
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccc------------------------cCCccCcEEecccccccc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSL------------------------SGLTKLAYLYLSHNQLTE 133 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l------------------------~~l~~L~~L~l~~n~l~~ 133 (419)
+++|.+.+..+..+..+.+|+.|++++|++. .+|..+ ..+++|+.|++++|.+.+
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 7777666666666666666666666666654 234444 444455555555555554
Q ss_pred cChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcc
Q psy4257 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213 (419)
Q Consensus 134 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 213 (419)
..+..|..+++|+.|++++|.+.+.... .+..+++|+.|++++|.+...........+|+.|++++|.+.+..+.
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINS-----RKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccCh-----hhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence 4455555555555555555555443221 23456677777777776653322233456788888888888877788
Q ss_pred cCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccccchhhhhhcccc
Q psy4257 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQ 292 (419)
Q Consensus 214 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 292 (419)
.|..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++ +|..|..+++|+.|+|++|++.+..+..
T Consensus 494 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~------- 566 (968)
T PLN00113 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN------- 566 (968)
T ss_pred hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh-------
Confidence 88888888889999988887777778888889999999998886 5677888889999999999888543332
Q ss_pred eecCCcceeEEecCCccccccc
Q psy4257 293 IFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 293 ~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
+..+.+|+.+++++|++.+...
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred HhcCcccCEEeccCCcceeeCC
Confidence 2247788899999998876543
No 5
>KOG4237|consensus
Probab=99.97 E-value=7.4e-33 Score=246.47 Aligned_cols=321 Identities=21% Similarity=0.297 Sum_probs=224.3
Q ss_pred EecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEEecCC-CCC
Q psy4257 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF-NQI 84 (419)
Q Consensus 8 L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~-n~l 84 (419)
.+.++-.++++|..+. +.-..|+|..|+|+.||+ .|+.+++|+.|||++|.|+.| |.+|.++.+|..|.+-+ |+|
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3445555666665553 356777788888888865 578888888888888888877 57788887777665555 778
Q ss_pred cccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc-----
Q psy4257 85 TMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF----- 158 (419)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----- 158 (419)
+.+..+.|.++..|+.|.+.-|++..++ ..|..+++|..|.+.+|.+..+....|..+..++.+.+..|.+...
T Consensus 129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch
Confidence 8888888888888888888888877664 5677778888888888887776666777777888887777763211
Q ss_pred -cCCCC-CCCcccCcccccEEEcCCCCCcCch-hhh-cCCCCCc-EEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcc
Q psy4257 159 -GTRNE-GKNQVQGVTNIFELKLQHNEIENLD-GAL-MGIHGLS-RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 159 -~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~-~~~-~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 233 (419)
..... ....++......-..+.+.++..++ +.| ..+..+. .+....+.....+...|..+++|++|+|++|+|+.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 00000 0001122222222223333333332 112 1111221 12222223333444568899999999999999999
Q ss_pred cCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257 234 LEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312 (419)
Q Consensus 234 ~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~ 312 (419)
|...+|.+...+++|+|..|+|..+. ..|.++..|+.|+|.+|+|+.+.+..+. .+.++.+|.+-+|||.|+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-------~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-------TLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc-------ccceeeeeehccCcccCc
Confidence 99999999999999999999999887 5688999999999999999988876543 477889999999999999
Q ss_pred cchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257 313 DSMRAVIDAMETINNNTKIHGETICQPDS 341 (419)
Q Consensus 313 ~~~~~~~~~l~~~~~~~~~~~~~~c~~~~ 341 (419)
|.+.|+.+|+++.. +.+.+.|+.+.
T Consensus 362 C~l~wl~~Wlr~~~----~~~~~~Cq~p~ 386 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKS----VVGNPRCQSPG 386 (498)
T ss_pred cchHHHHHHHhhCC----CCCCCCCCCCc
Confidence 99999999999833 66777887543
No 6
>KOG0444|consensus
Probab=99.96 E-value=2.9e-32 Score=255.41 Aligned_cols=276 Identities=25% Similarity=0.367 Sum_probs=173.0
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEec
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 79 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l 79 (419)
+.+|++|.+++|++.++.+.+..++.|+.+++..|++. .||..+.++..|..|||+.|++...|..+...+++-.|+|
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 34566666666666666666666666666666666655 4566666666666666666666666666666666666666
Q ss_pred CCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcccc
Q psy4257 80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159 (419)
Q Consensus 80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (419)
++|+|..|+...|.++..|-.|+|++|++..+|..+..+..|+.|.|++|.+...-...+..+++|+.|.+++.+=+-.
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~- 212 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD- 212 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh-
Confidence 6666666666666666666666666666666666666666666666666665544444444555555555555432111
Q ss_pred CCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc
Q psy4257 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 239 (419)
-.+..+..+.+|..++++.|.+..+|..+..+.+|+.|+|++|+|+.+.. ......+|+.|+||.|+++.++. ++
T Consensus 213 ---N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~-av 287 (1255)
T KOG0444|consen 213 ---NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPD-AV 287 (1255)
T ss_pred ---cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchH-HH
Confidence 02224566778888888888888888888888888888888888877633 23445677777777777776654 34
Q ss_pred cCCCCCceEeCcCCcc--cccCccCCCCCCcCEEecCCCcccccch
Q psy4257 240 TFLPALEELFVSHNSL--TRLDKDFHGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 240 ~~l~~L~~L~L~~N~i--~~l~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (419)
..++.|+.|++.+|++ .+||.+++.+.+|+.+..++|++.-+|.
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence 4456666666666644 2355555555555555555555444443
No 7
>KOG0472|consensus
Probab=99.96 E-value=6.4e-32 Score=240.95 Aligned_cols=199 Identities=26% Similarity=0.445 Sum_probs=148.2
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~ 83 (419)
.+..|++++|++..+|..+..+.+|+.|++++|.+.+++++++.+..|..++..+|.+.++|+.+..+.+|..|++.+|+
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc
Confidence 45567777777777777777788888888888888888888888888888888888888888778888888888888888
Q ss_pred CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 163 (419)
+..++++.+. ++.|++|+...|.++.+|..++.+.+|..||+..|.+...+ .|.++..|.+|+++.|.|.-++..
T Consensus 172 l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~lpae-- 246 (565)
T KOG0472|consen 172 LKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEMLPAE-- 246 (565)
T ss_pred hhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHhhHHH--
Confidence 8888777666 77888888888888888888888888888888888776643 666666666666666666655433
Q ss_pred CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCc
Q psy4257 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210 (419)
Q Consensus 164 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 210 (419)
....+.++..||+.+|+++++|..+.-+.+|++||+++|.|+++
T Consensus 247 ---~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 247 ---HLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred ---HhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC
Confidence 45566666666666666666666666666666666666666654
No 8
>KOG0444|consensus
Probab=99.96 E-value=1e-30 Score=245.06 Aligned_cols=292 Identities=26% Similarity=0.355 Sum_probs=218.3
Q ss_pred CCCCcEEeccccccc--ccccccccccccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257 2 LTDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN 78 (419)
Q Consensus 2 l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~ 78 (419)
++.|+.+++..|++. .+|..++.+..|..|||++|++.++|..+.+.+++-.|+|++|.|..|| ..|.++..|-+||
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLD 156 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence 567888888888876 5778888888999999999999999888888888999999999999888 5677888888899
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccccc-ccChhhhcCCCCccEEEcCCCCCc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLT-EFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
|++|++..++| .+..+..|+.|.|++|.+..+- ..+..+.+|+.|.+++.+-+ ...|..+.++.+|+.+|++.|.+.
T Consensus 157 LS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 99999888876 4677888888888888776431 33445566777777765432 235556777777777788877776
Q ss_pred cccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc--cc
Q psy4257 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT--TL 234 (419)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~ 234 (419)
.++. .+-.+.+|+.|+|++|.|+.+........+|+.|+|++|+++.+ |.++..+++|+.|.+.+|+++ +|
T Consensus 236 ~vPe------cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L-P~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 236 IVPE------CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL-PDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred cchH------HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc-hHHHhhhHHHHHHHhccCcccccCC
Confidence 6543 45567777777888887777765555566777778888877766 677777777777777777654 55
Q ss_pred CchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccc
Q psy4257 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL 310 (419)
Q Consensus 235 ~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~ 310 (419)
+.+ ++.+.+|+.+..++|.+.-+|+++..|..|+.|.|+.|++-.+|..+-. ++.+..|++..||-.
T Consensus 309 PSG-IGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl--------L~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 309 PSG-IGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL--------LPDLKVLDLRENPNL 375 (1255)
T ss_pred ccc-hhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhh--------cCCcceeeccCCcCc
Confidence 543 5667777777777777777777777777788888888877777765432 667777777777743
No 9
>KOG0472|consensus
Probab=99.96 E-value=2.7e-31 Score=236.96 Aligned_cols=295 Identities=25% Similarity=0.360 Sum_probs=222.1
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~ 83 (419)
+|..|++.+|++..++...-+++.|++||+.+|.++.+|..++.+.+|..|++..|+|..+| .|.+|..|++|+++.|+
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH
Confidence 34456666666666655444467777777777777777777777777777788888887777 47777888888888888
Q ss_pred CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC--
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR-- 161 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-- 161 (419)
|..++......+.+|.+|+|.+|+++++|..+.-+.+|.+||+++|.|++. +..++++ +|+.|-+.||.+..+...
T Consensus 240 i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~L-p~sLgnl-hL~~L~leGNPlrTiRr~ii 317 (565)
T KOG0472|consen 240 IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSL-PYSLGNL-HLKFLALEGNPLRTIRREII 317 (565)
T ss_pred HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccC-Ccccccc-eeeehhhcCCchHHHHHHHH
Confidence 888877777788888889999999888888888888888999999888874 5678888 788888888877521000
Q ss_pred ----------------------------CCC---CCcc---------------------------c--CcccccEEEcCC
Q psy4257 162 ----------------------------NEG---KNQV---------------------------Q--GVTNIFELKLQH 181 (419)
Q Consensus 162 ----------------------------~~~---~~~~---------------------------~--~~~~L~~L~l~~ 181 (419)
..+ ...+ . .-.-++.+++++
T Consensus 318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk 397 (565)
T KOG0472|consen 318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK 397 (565)
T ss_pred cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence 000 0000 0 001134556666
Q ss_pred CCCcCc------------------------hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257 182 NEIENL------------------------DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237 (419)
Q Consensus 182 n~l~~~------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 237 (419)
|++.++ |..++.+++|..|+|++|-+..+ |..++.+..|+.||++.|+|..++..
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~L-P~e~~~lv~Lq~LnlS~NrFr~lP~~ 476 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDL-PEEMGSLVRLQTLNLSFNRFRMLPEC 476 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhc-chhhhhhhhhheecccccccccchHH
Confidence 665443 33456788999999999999988 67788888999999999999888653
Q ss_pred hccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 238 ~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
...+..++.+-.++|++..++.. +.++.+|..|||.+|.|..+|+.. ..+.+++++.+.||||.-
T Consensus 477 -~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~L--------gnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 477 -LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPIL--------GNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred -HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhh--------ccccceeEEEecCCccCC
Confidence 33455677777788999999854 999999999999999999999864 358899999999999973
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.93 E-value=5.7e-25 Score=220.69 Aligned_cols=258 Identities=28% Similarity=0.260 Sum_probs=210.9
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~ 83 (419)
+-..|+|+++.++.+|..+. ++|+.|++.+|+|+.+|.. .++|++|++++|+|+.+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 45689999999999988775 4899999999999999853 57899999999999999853 4689999999999
Q ss_pred CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 163 (419)
+..++. . ..+|+.|++++|+++.+|.. .++|+.|++++|.+.++.. . ..+|+.|++++|.+..++..
T Consensus 274 L~~Lp~-l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~-l---p~~L~~L~Ls~N~L~~LP~l-- 340 (788)
T PRK15387 274 LTHLPA-L---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA-L---PSELCKLWAYNNQLTSLPTL-- 340 (788)
T ss_pred hhhhhh-c---hhhcCEEECcCCcccccccc---ccccceeECCCCccccCCC-C---cccccccccccCcccccccc--
Confidence 987753 2 35789999999999998753 4789999999999987532 2 34688899999999876531
Q ss_pred CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC
Q psy4257 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243 (419)
Q Consensus 164 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 243 (419)
..+|+.|+|++|+|..+|.. ..+|+.|++++|.|..+ |.. ..+|+.|+|++|+|..++.. .+
T Consensus 341 -------p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~L-P~l---~~~L~~LdLs~N~Lt~LP~l----~s 402 (788)
T PRK15387 341 -------PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSL-PAL---PSGLKELIVSGNRLTSLPVL----PS 402 (788)
T ss_pred -------ccccceEecCCCccCCCCCC---CcccceehhhccccccC-ccc---ccccceEEecCCcccCCCCc----cc
Confidence 25799999999999998853 35788899999999887 332 35799999999999987643 46
Q ss_pred CCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 244 ~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
+|+.|++++|+|+.+|.. ..+|+.|++++|+|+.+|..+. .+..+..|+|++|++.+
T Consensus 403 ~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~--------~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 403 ELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLI--------HLSSETTVNLEGNPLSE 459 (788)
T ss_pred CCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHh--------hccCCCeEECCCCCCCc
Confidence 899999999999999853 3468889999999999887543 37888999999999864
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.92 E-value=1.9e-24 Score=216.95 Aligned_cols=244 Identities=27% Similarity=0.286 Sum_probs=203.4
Q ss_pred CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 82 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n 82 (419)
++|+.|++.+|+|+.+|.. .++|+.|+|++|+|+.+|.. .++|+.|++++|.+..+|..+ .+|+.|++++|
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N 292 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN 292 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC
Confidence 3689999999999988752 57999999999999999854 468999999999999988643 57889999999
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257 83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162 (419)
Q Consensus 83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (419)
++..++. ..++|+.|++++|+|..+|... .+|+.|++++|.+.+++ . + ..+|+.|+|++|+|..++..
T Consensus 293 ~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP-~-l--p~~Lq~LdLS~N~Ls~LP~l- 360 (788)
T PRK15387 293 QLTSLPV----LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLP-T-L--PSGLQELSVSDNQLASLPTL- 360 (788)
T ss_pred ccccccc----cccccceeECCCCccccCCCCc---ccccccccccCcccccc-c-c--ccccceEecCCCccCCCCCC-
Confidence 9998854 3478999999999999987532 46889999999998753 2 1 25799999999999987532
Q ss_pred CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242 (419)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 242 (419)
..+|+.|++++|.+..+|.. ..+|+.|++++|.|++++. . ..+|+.|++++|+|..++.. +
T Consensus 361 --------p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~LssIP~l----~ 421 (788)
T PRK15387 361 --------PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLTSLPML----P 421 (788)
T ss_pred --------CcccceehhhccccccCccc---ccccceEEecCCcccCCCC-c---ccCCCEEEccCCcCCCCCcc----h
Confidence 35788899999999988853 3579999999999998743 2 36899999999999988742 4
Q ss_pred CCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhh
Q psy4257 243 PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLA 286 (419)
Q Consensus 243 ~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (419)
.+|+.|++++|+|+.+|..+..+++|+.|+|++|+|++.....+
T Consensus 422 ~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 422 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 57899999999999999999999999999999999997655543
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.90 E-value=2.5e-23 Score=210.05 Aligned_cols=251 Identities=26% Similarity=0.352 Sum_probs=144.8
Q ss_pred ccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257 27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 106 (419)
+...|++++++++.+|..+. .+|+.|+|++|.|+.+|..+. .+|+.|++++|++..++.. +. .+|+.|+|++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l~--~~L~~L~Ls~N 251 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPAT-LP--DTIQEMELSIN 251 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChh-hh--ccccEEECcCC
Confidence 34556666666665554432 355666666666666554332 3566666666666555332 21 24666666666
Q ss_pred cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257 107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN 186 (419)
Q Consensus 107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 186 (419)
++..+|..+. .+|+.|++++|.+..+ +..+. .+|+.|++++|++..++.. + ..+|+.|++++|.+..
T Consensus 252 ~L~~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~LP~~------l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 252 RITELPERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIRTLPAH------L--PSGITHLNVQSNSLTA 318 (754)
T ss_pred ccCcCChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCccccCccc------c--hhhHHHHHhcCCcccc
Confidence 6666654443 3566666666666543 22222 3566666666666654321 1 1356666677776666
Q ss_pred chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCC
Q psy4257 187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLP 266 (419)
Q Consensus 187 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~ 266 (419)
+|..+ .++|+.|++++|.++.+ |..+. ++|+.|+|++|+|..++... .++|+.|+|++|+|..+|..+. .
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l~--~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~--~ 388 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTSL-PASLP--PELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTNLPENLP--A 388 (754)
T ss_pred CCccc--cccceeccccCCccccC-Chhhc--CcccEEECCCCCCCcCChhh---cCCcCEEECCCCcCCCCCHhHH--H
Confidence 65433 24677777777777665 33332 56777777777777665432 3567777777777777765443 2
Q ss_pred CcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 267 VLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
.|+.|++++|+|..++..+... ....+.+..+++.+||+..
T Consensus 389 sL~~LdLs~N~L~~LP~sl~~~----~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 389 ALQIMQASRNNLVRLPESLPHF----RGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHhhccCCcccCchhHHHH----hhcCCCccEEEeeCCCccH
Confidence 5777777777777766543221 1124566777778887753
No 13
>KOG0618|consensus
Probab=99.89 E-value=3.1e-25 Score=216.94 Aligned_cols=286 Identities=27% Similarity=0.330 Sum_probs=179.9
Q ss_pred EecccccccccccccccccccceeecccccCccCccc-------------------cccccccceeecccccccCchhhh
Q psy4257 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-------------------IQLFSQLGSLYANNNRITSLDGLL 68 (419)
Q Consensus 8 L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~-------------------~~~~~~L~~L~l~~n~i~~l~~~~ 68 (419)
|+|.+|.+..+ .+..+.+|+.|..+.|++..+-.. -..-.+|++++++.|.+..+|..+
T Consensus 183 ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi 260 (1081)
T KOG0618|consen 183 LDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWI 260 (1081)
T ss_pred eecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHH
Confidence 77777777622 344466666666666665543110 011234444444444444444444
Q ss_pred cCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCC-ccE
Q psy4257 69 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR-LRT 147 (419)
Q Consensus 69 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 147 (419)
..+.+|+.|...+|.+..++ ..+....+|+.|.+..|.+..+|.....+..|+.|+|..|.+...+...|..+.. |+.
T Consensus 261 ~~~~nle~l~~n~N~l~~lp-~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLVALP-LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred HhcccceEecccchhHHhhH-HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence 44444555554444443332 2233344444444444544444444444445555555555544443333332222 444
Q ss_pred EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEc
Q psy4257 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226 (419)
Q Consensus 148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 226 (419)
|+.+.|++...+.. .-..++.|+.|.+.+|.+++- -..+.+...|+.|+|++|++..++...+.++..|++|+|
T Consensus 340 ln~s~n~l~~lp~~-----~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L 414 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSY-----EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL 414 (1081)
T ss_pred Hhhhhccccccccc-----cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence 44444444433311 123456788889999988742 245677889999999999999998888889999999999
Q ss_pred cCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecC
Q psy4257 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEG 306 (419)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 306 (419)
|+|+++.++ .....+..|+.|...+|+|..+| .+..++.|+.+|++.|+|+.+...... ..+.|+++++.|
T Consensus 415 SGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-------p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 415 SGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-------PSPNLKYLDLSG 485 (1081)
T ss_pred ccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhC-------CCcccceeeccC
Confidence 999999988 45667889999999999999999 788999999999999999866544322 247899999999
Q ss_pred Cccc
Q psy4257 307 NPVL 310 (419)
Q Consensus 307 Np~~ 310 (419)
|+|.
T Consensus 486 N~~l 489 (1081)
T KOG0618|consen 486 NTRL 489 (1081)
T ss_pred Cccc
Confidence 9973
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.89 E-value=8.5e-23 Score=206.26 Aligned_cols=248 Identities=24% Similarity=0.384 Sum_probs=205.5
Q ss_pred CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 82 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n 82 (419)
.+...|+++++.++.+|..+. ++|+.|+|++|+|+.+|..+. .+|+.|++++|.+..+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 356789999999999987664 589999999999999987654 589999999999999986554 57999999999
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257 83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162 (419)
Q Consensus 83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (419)
++..++.. +. .+|+.|++++|+|+.+|..+. .+|+.|++++|.+..++ ..+. .+|+.|++++|.+..++..
T Consensus 252 ~L~~LP~~-l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP-~~lp--~sL~~L~Ls~N~Lt~LP~~- 322 (754)
T PRK15370 252 RITELPER-LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLP-AHLP--SGITHLNVQSNSLTALPET- 322 (754)
T ss_pred ccCcCChh-Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCc-ccch--hhHHHHHhcCCccccCCcc-
Confidence 99987554 32 489999999999999987664 58999999999998754 3332 4789999999999876532
Q ss_pred CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242 (419)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 242 (419)
..++|+.|++++|.++.+|..+. ++|+.|++++|+|..+ |..+. ++|+.|+|++|++..++....
T Consensus 323 -------l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~L-P~~lp--~~L~~LdLs~N~Lt~LP~~l~--- 387 (754)
T PRK15370 323 -------LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVL-PETLP--PTITTLDVSRNALTNLPENLP--- 387 (754)
T ss_pred -------ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcC-Chhhc--CCcCEEECCCCcCCCCCHhHH---
Confidence 13689999999999999987654 6899999999999876 44443 689999999999999876542
Q ss_pred CCCceEeCcCCcccccCccC----CCCCCcCEEecCCCcccc
Q psy4257 243 PALEELFVSHNSLTRLDKDF----HGLPVLCKADLAHNNIKA 280 (419)
Q Consensus 243 ~~L~~L~L~~N~i~~l~~~~----~~l~~L~~L~L~~N~l~~ 280 (419)
..|+.|++++|+|..+|..+ ..++.+..|++.+|.|..
T Consensus 388 ~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 47999999999999988543 445889999999999874
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.6e-21 Score=209.59 Aligned_cols=284 Identities=17% Similarity=0.235 Sum_probs=156.8
Q ss_pred CcEEecccccccccccccccccccceeecccccCccCccccccccccceeeccccc-ccCchhhhcCCCCCCEEecCCCC
Q psy4257 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR-ITSLDGLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~-i~~l~~~~~~l~~L~~L~l~~n~ 83 (419)
|+.|.+.++.+..+|..+ ...+|+.|++.+|.+..++.++..+++|+.|+|+++. +..+|. +..+++|+.|++++|.
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC
Confidence 344444444444444332 2345555555555555554444555555555555432 333442 4445555555555544
Q ss_pred CcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (419)
.....+..+.++.+|+.|++++| .+..+|..+ ++++|+.|++++|......+. ...+|+.|++++|.+..++...
T Consensus 669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc
Confidence 33333344555555555555553 344444333 445555555555543222221 1245566666666655443211
Q ss_pred CCC------------------------CcccCcccccEEEcCCCC-CcCchhhhcCCCCCcEEEcCCCC-CCCcCcccCC
Q psy4257 163 EGK------------------------NQVQGVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNK-LRTISPDDFI 216 (419)
Q Consensus 163 ~~~------------------------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~ 216 (419)
... ......++|+.|++++|. +..+|..+.++++|+.|++++|. +..+ |..+
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L-P~~~- 822 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL-PTGI- 822 (1153)
T ss_pred cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee-CCCC-
Confidence 000 001123467777777763 55677777778888888887763 4444 4333
Q ss_pred CCCCCcEEEccCCc-CcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCC-Ccccccchhhhhhccccee
Q psy4257 217 GLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH-NNIKAINIQLALKTQCQIF 294 (419)
Q Consensus 217 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~~~ 294 (419)
.+++|+.|++++|. +..++. ...+|+.|+|++|.|..+|..+..+++|+.|+|++ |++..++... .
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~--------~ 890 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI--------S 890 (1153)
T ss_pred CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc--------c
Confidence 56778888888764 333322 14578889999999998888888899999999988 5677776542 2
Q ss_pred cCCcceeEEecCCc
Q psy4257 295 GLNSTLRIYLEGNP 308 (419)
Q Consensus 295 ~~~~l~~l~l~~Np 308 (419)
.+..|..+++.+|+
T Consensus 891 ~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 891 KLKHLETVDFSDCG 904 (1153)
T ss_pred cccCCCeeecCCCc
Confidence 35666666766654
No 16
>KOG0618|consensus
Probab=99.88 E-value=1.4e-24 Score=212.38 Aligned_cols=265 Identities=27% Similarity=0.416 Sum_probs=174.7
Q ss_pred CcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCC
Q psy4257 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84 (419)
Q Consensus 5 L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l 84 (419)
|++++++.|++..+|.++..+.+|+.|+..+|.++.+|..+....+|+.|.+..|.+..+|....+++.|+.|+|..|+|
T Consensus 243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred ceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cccChhhhcCCCC-CCEEEccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257 85 TMVRRDEFQNLHN-LDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162 (419)
Q Consensus 85 ~~~~~~~~~~~~~-L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (419)
..++...|.-... |+.|..+.|.+...|.. =..++.|+.|++.+|.+++.....+.+..+|+.|+|++|++..++..
T Consensus 323 ~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas- 401 (1081)
T KOG0618|consen 323 PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS- 401 (1081)
T ss_pred cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH-
Confidence 4444433333322 44444444444444310 12345788999999999998888999999999999999999887654
Q ss_pred CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242 (419)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 242 (419)
.++.+..|++|+|++|+++.+|..+..+..|++|...+|.+... | .+..++.|+.+|++.|+++.+.......-
T Consensus 402 ----~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 402 ----KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred ----HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 78889999999999999999999999999999999999999877 5 77889999999999999987654433333
Q ss_pred CCCceEeCcCCcccccC-ccCCCCCCcCEEecCCC
Q psy4257 243 PALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN 276 (419)
Q Consensus 243 ~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N 276 (419)
++|++|||++|.-..++ +.|..+..+...++.-|
T Consensus 476 p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 89999999999754444 34566666666666655
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=7.3e-21 Score=204.49 Aligned_cols=283 Identities=24% Similarity=0.259 Sum_probs=212.0
Q ss_pred CCCCCcEEeccccccc-------ccccccccc-cccceeecccccCccCccccccccccceeecccccccCchhhhcCCC
Q psy4257 1 GLTDLNWLFLNNNRLK-------SLEGQLGTL-SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT 72 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~-------~l~~~~~~~-~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~ 72 (419)
+|++|+.|.+..+... .+++.+..+ .+|+.|++.++.+..+|..| ...+|+.|++.+|.+..++..+..++
T Consensus 556 ~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred cCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCC
Confidence 5788999988766421 355556555 46999999999999999887 46899999999999999988888999
Q ss_pred CCCEEecCCCC-CcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEc
Q psy4257 73 KLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150 (419)
Q Consensus 73 ~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 150 (419)
+|+.|+|+++. +..+ + .+..+++|+.|+|++| .+..+|..+..+++|+.|++++|......+..+ .+++|+.|++
T Consensus 635 ~Lk~L~Ls~~~~l~~i-p-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L 711 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEI-P-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL 711 (1153)
T ss_pred CCCEEECCCCCCcCcC-C-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence 99999999876 4444 3 4888999999999997 577889999999999999999975433344433 6899999999
Q ss_pred CCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh------------------------------cCCCCCcEE
Q psy4257 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL------------------------------MGIHGLSRL 200 (419)
Q Consensus 151 ~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------------------------------~~l~~L~~L 200 (419)
++|......+ ....+|+.|++++|.+..+|..+ ...++|+.|
T Consensus 712 sgc~~L~~~p--------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 712 SGCSRLKSFP--------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred CCCCCccccc--------cccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 9985322111 12357788888888877766432 112467777
Q ss_pred EcCCCCCCCcCcccCCCCCCCcEEEccCCc-CcccCchhccCCCCCceEeCcCC-cccccCccCCCCCCcCEEecCCCcc
Q psy4257 201 DLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHN-SLTRLDKDFHGLPVLCKADLAHNNI 278 (419)
Q Consensus 201 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~l~~~~~~l~~L~~L~L~~N~l 278 (419)
+|++|......|..+.++++|+.|+|++|. +..++... .+++|+.|+|++| .+..+|.. ..+|+.|+|++|.|
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGI 858 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCC
Confidence 888775544447778888888888888864 56665432 5788888888886 44445432 36788999999999
Q ss_pred cccchhhhhhcccceecCCcceeEEecCCc
Q psy4257 279 KAINIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
+.+|..+ ..+++|..+++.+|+
T Consensus 859 ~~iP~si--------~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 859 EEVPWWI--------EKFSNLSFLDMNGCN 880 (1153)
T ss_pred ccChHHH--------hcCCCCCEEECCCCC
Confidence 9888653 347888899988854
No 18
>KOG4237|consensus
Probab=99.87 E-value=2.9e-24 Score=191.84 Aligned_cols=272 Identities=25% Similarity=0.329 Sum_probs=221.7
Q ss_pred CCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeeccc-ccccCch-hhhcCCCCCCEEec
Q psy4257 4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN-NRITSLD-GLLRGLTKLQVFNM 79 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~-n~i~~l~-~~~~~l~~L~~L~l 79 (419)
.-.+|+|..|.|+.+| +.|..+++|++|||++|+|+.| |+.|.++.+|.+|-+.+ |+|+.++ ..|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3468999999999998 6788899999999999999999 67899999998887766 9999998 78999999999999
Q ss_pred CCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccccc------------ChhhhcCCCCcc
Q psy4257 80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEF------------LLDDIRGLKRLR 146 (419)
Q Consensus 80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~ 146 (419)
.-|++.-+..++|..+++|..|.+.+|.+..|+. .|..+..++.+.+..|.+... .+-.+++.....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 9999999999999999999999999999999976 789999999999998884321 222344444444
Q ss_pred EEEcCCCCCccccCCCCCCCcccCcccccEEEcCCC-CCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEE
Q psy4257 147 TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN-EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224 (419)
Q Consensus 147 ~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 224 (419)
-..+.+.++..+....+... +..+..=..+.+ .....| ..|..+++|+.|+|++|+|+.|...+|.++..+++|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~----~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCS----LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred hHHHHHHHhcccchhhhhhh----HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 45555666655543311111 112211112223 233334 568899999999999999999999999999999999
Q ss_pred EccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCccc
Q psy4257 225 DISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIK 279 (419)
Q Consensus 225 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~ 279 (419)
.|..|+|..+....|.++..|+.|+|.+|+|+.+. ..|..+..|..|+|-.|.+.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999999999999999999999999999999975 66889999999999988764
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=1.1e-21 Score=183.79 Aligned_cols=276 Identities=26% Similarity=0.277 Sum_probs=162.6
Q ss_pred EEeccccccc--ccccccccccccceeecccccCc-----cCccccccccccceeecccccccC-------chhhhcCCC
Q psy4257 7 WLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITS-------LDGLLRGLT 72 (419)
Q Consensus 7 ~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-------l~~~~~~l~ 72 (419)
.|+|..+.++ .....+..+.+|+.|+++++.++ .++..+...+.|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666654 22233444666777777777764 244445555667777777666552 223455566
Q ss_pred CCCEEecCCCCCcccChhhhcCCCC---CCEEEccCCcCcc-----ccccccCC-ccCcEEeccccccccc----Chhhh
Q psy4257 73 KLQVFNMDFNQITMVRRDEFQNLHN---LDSISLQNNQITS-----MNSSLSGL-TKLAYLYLSHNQLTEF----LLDDI 139 (419)
Q Consensus 73 ~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~L~~n~l~~-----i~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~ 139 (419)
+|+.|++++|.+....+..+..+.+ |++|++++|++.. +...+..+ ++|+.|++++|.+++. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 6777777776666544444444433 6666666666552 12233444 5566666666655521 12233
Q ss_pred cCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCc----ccC
Q psy4257 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP----DDF 215 (419)
Q Consensus 140 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 215 (419)
..+.+|+.|++++|.+.+.. +..++..+..+++|+.|++++|.+.+... ..+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~------------------------~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~ 217 (319)
T cd00116 162 RANRDLKELNLANNGIGDAG------------------------IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217 (319)
T ss_pred HhCCCcCEEECcCCCCchHH------------------------HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence 44445555555555443210 00123344555678888888887764432 345
Q ss_pred CCCCCCcEEEccCCcCcccCchhcc-----CCCCCceEeCcCCcccc-----cCccCCCCCCcCEEecCCCcccccchhh
Q psy4257 216 IGLDSLKMLDISHNLLTTLEETSKT-----FLPALEELFVSHNSLTR-----LDKDFHGLPVLCKADLAHNNIKAINIQL 285 (419)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~-----l~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (419)
..+++|++|++++|.+.+.....+. ....|+.|++++|.++. +.+.+..+++|+++++++|.++.-+...
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 5677888888888887753222221 24688999999998862 3345666689999999999998776555
Q ss_pred hhhcccceecC-CcceeEEecCCcc
Q psy4257 286 ALKTQCQIFGL-NSTLRIYLEGNPV 309 (419)
Q Consensus 286 ~~~~~~~~~~~-~~l~~l~l~~Np~ 309 (419)
.... +... +.++.+++.+|||
T Consensus 298 ~~~~---~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 298 LAES---LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHH---HhhcCCchhhcccCCCCC
Confidence 4432 2224 6788899999986
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.81 E-value=9.3e-21 Score=177.40 Aligned_cols=252 Identities=21% Similarity=0.215 Sum_probs=159.8
Q ss_pred CCCCcEEeccccccc-----ccccccccccccceeecccccCcc-------CccccccccccceeecccccccC-chhhh
Q psy4257 2 LTDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLEA-------LPSDIQLFSQLGSLYANNNRITS-LDGLL 68 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~-------i~~~~~~~~~L~~L~l~~n~i~~-l~~~~ 68 (419)
+.+|++|+++++.++ .+...+...++|++|+++++.+.. ++..+..+.+|+.|++++|.+.. .+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 356899999999985 344456668889999999998763 23456778899999999999974 33444
Q ss_pred cCC---CCCCEEecCCCCCcccC----hhhhcCC-CCCCEEEccCCcCc-----cccccccCCccCcEEecccccccccC
Q psy4257 69 RGL---TKLQVFNMDFNQITMVR----RDEFQNL-HNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEFL 135 (419)
Q Consensus 69 ~~l---~~L~~L~l~~n~l~~~~----~~~~~~~-~~L~~L~L~~n~l~-----~i~~~l~~l~~L~~L~l~~n~l~~~~ 135 (419)
..+ ++|+.|++++|++.... ...+..+ ++|+.|++++|.++ .+...+..+.+|++|++++|.+.+..
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 444 44999999999987422 2345666 89999999999988 33456777889999999999988532
Q ss_pred ----hhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC
Q psy4257 136 ----LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 211 (419)
Q Consensus 136 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 211 (419)
...+..+++|+.|++++|.+...... .+...+..+++|++|++++|.+++..
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~------------------------~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGAS------------------------ALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHH------------------------HHHHHhcccCCCCEEecCCCcCchHH
Confidence 23445567899999999887643211 11223334445555555555554321
Q ss_pred cccCC-----CCCCCcEEEccCCcCcccCc----hhccCCCCCceEeCcCCcccccC-----ccCCCC-CCcCEEecCCC
Q psy4257 212 PDDFI-----GLDSLKMLDISHNLLTTLEE----TSKTFLPALEELFVSHNSLTRLD-----KDFHGL-PVLCKADLAHN 276 (419)
Q Consensus 212 ~~~~~-----~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~i~~l~-----~~~~~l-~~L~~L~L~~N 276 (419)
...+. ....|++|++++|.+++... ..+..+++|+++++++|.+..-+ ..+... +.++.+++.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 11111 12455555555555542111 12233455666666666555422 223333 45666666555
Q ss_pred c
Q psy4257 277 N 277 (419)
Q Consensus 277 ~ 277 (419)
.
T Consensus 318 ~ 318 (319)
T cd00116 318 S 318 (319)
T ss_pred C
Confidence 4
No 21
>KOG0617|consensus
Probab=99.74 E-value=3.5e-20 Score=147.85 Aligned_cols=160 Identities=26% Similarity=0.437 Sum_probs=106.5
Q ss_pred cccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEE
Q psy4257 22 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSI 101 (419)
Q Consensus 22 ~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 101 (419)
++.+.++..|.|++|+++.+|..+..+.+|+.|++.+|+|..+|..++.+++|+.|+++-|++..+ |..|+.++.|++|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l-prgfgs~p~levl 107 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL-PRGFGSFPALEVL 107 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC-ccccCCCchhhhh
Confidence 455666777777777777777777777777777777777777776677777777777776666544 4456666677777
Q ss_pred EccCCcCc--cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEc
Q psy4257 102 SLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179 (419)
Q Consensus 102 ~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l 179 (419)
+|.+|++. .+|..|..+..|+.|++++|.+.- .|.+++.+++|+.|.+..|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndl------------------------ 162 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDL------------------------ 162 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCch------------------------
Confidence 77666665 456666666666666666666643 344556666665555555554
Q ss_pred CCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCc
Q psy4257 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212 (419)
Q Consensus 180 ~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 212 (419)
-++|..+..+..|++|.+.+|+++.++|
T Consensus 163 -----l~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 163 -----LSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred -----hhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 4456667777777777787777777644
No 22
>KOG0617|consensus
Probab=99.72 E-value=5.5e-20 Score=146.71 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=145.6
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+.++..|.|++|+++.++..+..+.+|+.|++++|+|+++|..++.+++|+.|+++-|++..+|..|+.++.|+.||+.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 45678899999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcc-cChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC
Q psy4257 82 NQITM-VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160 (419)
Q Consensus 82 n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 160 (419)
|++.. ..|..|..+..|+.|+|++|.+.-+|..++.+.+|+.|.+++|.+-. .|..++.+..|+.|.+.+|++..+++
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccceeeecCh
Confidence 99865 34566778999999999999999999999999999999999999887 56789999999999999999987765
Q ss_pred C
Q psy4257 161 R 161 (419)
Q Consensus 161 ~ 161 (419)
.
T Consensus 191 e 191 (264)
T KOG0617|consen 191 E 191 (264)
T ss_pred h
Confidence 3
No 23
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.53 E-value=1.5e-14 Score=139.35 Aligned_cols=199 Identities=30% Similarity=0.411 Sum_probs=141.3
Q ss_pred eeecccccCccCccccccccccceeecccccccCchhhhcCCC-CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257 30 LLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT-KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108 (419)
Q Consensus 30 ~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 108 (419)
.+++..+.+..-...+..++.++.|++.+|.+..++.....+. +|+.|++++|++..+. ..+..+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchh
Confidence 4677777764333344555677888888888887776666663 7888888888877763 3466777888888888888
Q ss_pred ccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch
Q psy4257 109 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD 188 (419)
Q Consensus 109 ~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 188 (419)
..++......++|+.|++++|.+..+. ........|++|.+++|.+.... ..+..+.++..+.+.+|++..++
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~~~~------~~~~~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSIIELL------SSLSNLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcceecc------hhhhhcccccccccCCceeeecc
Confidence 877666557778888888888877653 33344555788888888533322 13566677777778888877766
Q ss_pred hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchh
Q psy4257 189 GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238 (419)
Q Consensus 189 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 238 (419)
..+..+..++.|++++|.++.+.. ++.+.+++.|++++|.+..+....
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 677778888888888888888755 778888888888888887665443
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.50 E-value=4.7e-14 Score=135.94 Aligned_cols=196 Identities=35% Similarity=0.425 Sum_probs=154.7
Q ss_pred eeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCC-CCCEEEccCCcCccccccccCCccCcEEecccccc
Q psy4257 53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH-NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131 (419)
Q Consensus 53 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l 131 (419)
.+++..+.+..-...+..+..++.|++.+|.+..+.+. ...+. +|+.|++++|++..++..+..+++|+.|++++|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 57888888754333455568899999999999888653 34443 89999999999998887888899999999999998
Q ss_pred cccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC
Q psy4257 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 211 (419)
Q Consensus 132 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 211 (419)
..+.+ .....+.|+.|++++|++..++.. ......|.+|.+++|.+..++..+..+.++..+.+.+|++..+
T Consensus 176 ~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~------~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~- 247 (394)
T COG4886 176 SDLPK-LLSNLSNLNNLDLSGNKISDLPPE------IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL- 247 (394)
T ss_pred hhhhh-hhhhhhhhhheeccCCccccCchh------hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-
Confidence 87543 333678899999999999887642 2345568899999997666667778888888888888888765
Q ss_pred cccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259 (419)
Q Consensus 212 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~ 259 (419)
+..+..+.+++.|++++|.++.+.. +..+.+++.|++++|.+..++
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 5667788889999999999998876 677889999999999887654
No 25
>KOG0532|consensus
Probab=99.50 E-value=1.4e-15 Score=142.56 Aligned_cols=213 Identities=22% Similarity=0.325 Sum_probs=174.0
Q ss_pred EEeccccccccccccc--ccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCC
Q psy4257 7 WLFLNNNRLKSLEGQL--GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84 (419)
Q Consensus 7 ~L~l~~n~l~~l~~~~--~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l 84 (419)
+|.|++-++..+|..- ..+..-...||+.|++.++|..+..+..|+.+.|+.|.|..||..+..+..|.+|+|+.|++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence 4667777777776322 23566678999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC
Q psy4257 85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG 164 (419)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 164 (419)
..++.. +..+ -|+.|.+++|+++.+|..++....|..|+.+.|.+..+ +..++++.+|+.|.+..|++..++..
T Consensus 134 S~lp~~-lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~lp~E--- 207 (722)
T KOG0532|consen 134 SHLPDG-LCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLEDLPEE--- 207 (722)
T ss_pred hcCChh-hhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhhCCHH---
Confidence 988654 4444 59999999999999999999999999999999999884 56788899999999999999887643
Q ss_pred CCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCC---CCCCcEEEccCCc
Q psy4257 165 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG---LDSLKMLDISHNL 230 (419)
Q Consensus 165 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~L~~n~ 230 (419)
+. .-.|..||++.|++..||..|..+..|++|-|.+|.+..- |..+.. ..=.++|+..-++
T Consensus 208 ---l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 208 ---LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ---Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhcc
Confidence 11 2347889999999999999999999999999999998764 333322 2234566666663
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.47 E-value=4.8e-14 Score=117.42 Aligned_cols=139 Identities=32% Similarity=0.438 Sum_probs=48.9
Q ss_pred cccccccccccccccccccceeecccccCccCccccc-cccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccC
Q psy4257 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 88 (419)
Q Consensus 10 l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~-~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~ 88 (419)
+..+.|...+. +.+..+++.|+|.+|.|+.| +.++ .+.+|+.|++++|.|..++. +..++.|+.|++++|+|+.+.
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-C
T ss_pred ccccccccccc-cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccc
Confidence 34444544433 34455778888888888877 3454 46788888888888888764 677888888888888888876
Q ss_pred hhhhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEecccccccccC---hhhhcCCCCccEEEcC
Q psy4257 89 RDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDLS 151 (419)
Q Consensus 89 ~~~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~ 151 (419)
......+++|++|++++|+|..+. ..+..+++|+.|++.+|.+.... ...+..+++|+.||-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 533346788888888888887663 35667788888888888877542 1245667777777654
No 27
>KOG1909|consensus
Probab=99.46 E-value=1e-14 Score=129.44 Aligned_cols=165 Identities=22% Similarity=0.213 Sum_probs=79.6
Q ss_pred hhcCCCCCCEEecCCCCCcccChh----hhcCCCCCCEEEccCCcCcccc--------------ccccCCccCcEEeccc
Q psy4257 67 LLRGLTKLQVFNMDFNQITMVRRD----EFQNLHNLDSISLQNNQITSMN--------------SSLSGLTKLAYLYLSH 128 (419)
Q Consensus 67 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~~i~--------------~~l~~l~~L~~L~l~~ 128 (419)
++.++++|+.|+||.|.+..-.+. -+..+..|++|+|.+|.+.... .....-++|+.+....
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 344555666666666655433222 2334556666666666554221 1223345677777777
Q ss_pred ccccccC----hhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC-----chhhhcCCCCCcE
Q psy4257 129 NQLTEFL----LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIHGLSR 199 (419)
Q Consensus 129 n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~ 199 (419)
|++.... ...|...+.|+.+.+..|.|..-.. ......+..+++|+.|+|.+|.++. +...++.++.|+.
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 7766543 2345556677777777776653221 1112223344444444444444431 2233344445555
Q ss_pred EEcCCCCCCCcCcccC-----CCCCCCcEEEccCCcCc
Q psy4257 200 LDLSHNKLRTISPDDF-----IGLDSLKMLDISHNLLT 232 (419)
Q Consensus 200 L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~ 232 (419)
|++++|.+..-...+| ...++|++|.|.+|.|+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 5555554433222221 12344555555555444
No 28
>KOG0532|consensus
Probab=99.44 E-value=6.1e-15 Score=138.38 Aligned_cols=193 Identities=24% Similarity=0.338 Sum_probs=167.3
Q ss_pred CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 82 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n 82 (419)
..-...|++.|++..+|..+..+..|+.+.|..|.|..||..+..+..|..|+|+.|+++.+|..+..++ |+.|.+++|
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 3345678999999999988888999999999999999999999999999999999999999997666664 999999999
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257 83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162 (419)
Q Consensus 83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (419)
+++.++. .++....|..|+.+.|++.++|..+..+.+|+.|.++.|.+..++ ..+..++ |..||++.|++..++.
T Consensus 154 kl~~lp~-~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp-~El~~Lp-Li~lDfScNkis~iPv-- 228 (722)
T KOG0532|consen 154 KLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLP-EELCSLP-LIRLDFSCNKISYLPV-- 228 (722)
T ss_pred ccccCCc-ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCC-HHHhCCc-eeeeecccCceeecch--
Confidence 9998865 577889999999999999999999999999999999999998865 4556666 8999999999998875
Q ss_pred CCCCcccCcccccEEEcCCCCCcCchhhhcC---CCCCcEEEcCCC
Q psy4257 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMG---IHGLSRLDLSHN 205 (419)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---l~~L~~L~Ls~n 205 (419)
.|..|+.|++|.|.+|.+.+-|..+.- ..-.++|+..-+
T Consensus 229 ----~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 229 ----DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ----hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 589999999999999999988765532 223566776665
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.43 E-value=9.3e-14 Score=115.69 Aligned_cols=104 Identities=32% Similarity=0.507 Sum_probs=23.8
Q ss_pred ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257 174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253 (419)
Q Consensus 174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 253 (419)
+++|+|.+|.|..+...-..+.+|+.|+|++|.|+.+. .+..++.|++|++++|+|+++.......+++|++|+|++|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 34444444444443321113444555555555555442 2444555555555555555543322223445555555555
Q ss_pred cccccC--ccCCCCCCcCEEecCCCccc
Q psy4257 254 SLTRLD--KDFHGLPVLCKADLAHNNIK 279 (419)
Q Consensus 254 ~i~~l~--~~~~~l~~L~~L~L~~N~l~ 279 (419)
+|..+. ..+..+++|+.|+|.+|.+.
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 554443 12334444444444444444
No 30
>KOG3207|consensus
Probab=99.43 E-value=3.1e-14 Score=129.74 Aligned_cols=207 Identities=22% Similarity=0.225 Sum_probs=98.8
Q ss_pred CCCCCCEEecCCCCCcccCh-hhhcCCCCCCEEEccCCcCcccc---ccccCCccCcEEecccccccccChh-hhcCCCC
Q psy4257 70 GLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMN---SSLSGLTKLAYLYLSHNQLTEFLLD-DIRGLKR 144 (419)
Q Consensus 70 ~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~---~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 144 (419)
.+.+|+.+.|.++.+..... .....|++++.|+|++|-+..+. .....+++|+.|+|+.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34555556665555444332 23344556666666666554331 2334555666666666655432111 1123455
Q ss_pred ccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC-CcCchhhhcCCCCCcEEEcCCCCCCCcC-cccCCCCCCCc
Q psy4257 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE-IENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLK 222 (419)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~ 222 (419)
|+.|.|+.|.++.... ......+++|..|+|..|. +..-.....-+..|+.|+|++|.+...+ ....+.++.|+
T Consensus 199 lK~L~l~~CGls~k~V----~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDV----QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hheEEeccCCCCHHHH----HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 5556666655543221 1123345555556665553 1111122233445555666655554332 12234455555
Q ss_pred EEEccCCcCcccCchh------ccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccc
Q psy4257 223 MLDISHNLLTTLEETS------KTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKA 280 (419)
Q Consensus 223 ~L~L~~n~l~~~~~~~------~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~ 280 (419)
.|+++.+.+.++.... ...+++|+.|+++.|+|..++ ..+..+.+|++|.+..|.+..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 5555555555542211 123455666666666655544 234445555555555555544
No 31
>KOG0531|consensus
Probab=99.42 E-value=1.9e-14 Score=139.05 Aligned_cols=246 Identities=26% Similarity=0.330 Sum_probs=115.5
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+..++.+.+..|.+..+-..+..+.+|..|++.+|.|..+...+..+.+|++|++++|.|..+. .+..+..|+.|++.
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLS 148 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc--chhhccchhhheec
Confidence 4445555555555554323345555555555555555555544455555555555555555553 24444455555555
Q ss_pred CCcCccccccccCCccCcEEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (419)
+|.|..+ ..+..+..|+.+++++|++..+.. . ...+.+++.+++.+|.+..+.
T Consensus 149 ~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~------------------------ 202 (414)
T KOG0531|consen 149 GNLISDI-SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE------------------------ 202 (414)
T ss_pred cCcchhc-cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc------------------------
Confidence 5555555 334445555555555555554332 1 244445555555555544332
Q ss_pred CcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCC--CCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc
Q psy4257 184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD 261 (419)
Q Consensus 184 l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~ 261 (419)
.+..+..+..+++..|.+..+.+ +..+. .|+.+++++|.+..+. ..+..+..+..|++.+|++..+. .
T Consensus 203 ------~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~-~ 272 (414)
T KOG0531|consen 203 ------GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLE-G 272 (414)
T ss_pred ------chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhhccccccc-c
Confidence 12222333333455555444321 11112 2555555555555442 12333455555566555555443 2
Q ss_pred CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 262 FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
+.....+..+....|.+.......... .....+.+..+++.+||..-
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 273 LERLPKLSELWLNDNKLALSEAISQEY---ITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccchHHHhccCcchhcchhhhhccc---cccccccccccccccCcccc
Confidence 333444445555555544221111100 01224455556666666543
No 32
>KOG1259|consensus
Probab=99.40 E-value=3.8e-14 Score=123.35 Aligned_cols=223 Identities=23% Similarity=0.231 Sum_probs=119.3
Q ss_pred ccccceeeccccc-------Cc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCC
Q psy4257 25 LSKLQLLVIEQNQ-------LE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95 (419)
Q Consensus 25 ~~~L~~L~L~~n~-------l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 95 (419)
+.+|+.|..++.. |. .+|..+.-+++|..+.++.+.-..|-+....-+.|+.+.+.+..+...+. +-..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~--l~pe 258 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS--LLPE 258 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccc--ccch
Confidence 5666666666531 11 23444555666777766666544443322333566666666554443211 1111
Q ss_pred CCCCEEEccCCcCc--cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCccc
Q psy4257 96 HNLDSISLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173 (419)
Q Consensus 96 ~~L~~L~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 173 (419)
..+.......-... .+-..+..+..|+.|||++|.|+.+ .....-++.++.|++++|.|..++ .++.+.+
T Consensus 259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~-------nLa~L~~ 330 (490)
T KOG1259|consen 259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQ-------NLAELPQ 330 (490)
T ss_pred hhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeeeh-------hhhhccc
Confidence 11111111110000 0001223334455555555555442 233344455555555555555443 2444555
Q ss_pred ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc-hhccCCCCCceEeCcC
Q psy4257 174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE-TSKTFLPALEELFVSH 252 (419)
Q Consensus 174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~ 252 (419)
|+.|+|++|.++.+.++-..+.+++.|.|++|.|..+ ..+..+-+|..||+++|+|..+.. ..++.+|-|+.+.|.+
T Consensus 331 L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 331 LQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred ceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 6666666666666666556677777777777777654 235566677788888887776543 3466788888888888
Q ss_pred CcccccC
Q psy4257 253 NSLTRLD 259 (419)
Q Consensus 253 N~i~~l~ 259 (419)
|.+..++
T Consensus 409 NPl~~~v 415 (490)
T KOG1259|consen 409 NPLAGSV 415 (490)
T ss_pred CCccccc
Confidence 8887766
No 33
>KOG0531|consensus
Probab=99.39 E-value=3.1e-14 Score=137.56 Aligned_cols=196 Identities=30% Similarity=0.382 Sum_probs=143.8
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+..++.+.+..|.|..+...+..+.+|+.|++.+|+|..+...+..+.+|++|++++|.|+.+.. +..+..|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheecc
Confidence 34567778888888875556788999999999999999986558889999999999999999865 56677799999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 160 (419)
|.|..+. .|..+..|+.+++++|++..+... ...+.+++.+++.+|.+.... .+..+..+..+++..|.+..+.+
T Consensus 150 N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 150 NLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred Ccchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC
Confidence 9999884 466789999999999999988543 588899999999999987653 34444555666888888876543
Q ss_pred CCCCCCcccCcc--cccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC
Q psy4257 161 RNEGKNQVQGVT--NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209 (419)
Q Consensus 161 ~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 209 (419)
. ..+. +|+.+++++|++..++..+..+..+..|++.+|++..
T Consensus 226 l-------~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~ 269 (414)
T KOG0531|consen 226 L-------NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISN 269 (414)
T ss_pred c-------ccchhHHHHHHhcccCccccccccccccccccccchhhccccc
Confidence 2 1111 2555555555555443333334444444444444433
No 34
>KOG1259|consensus
Probab=99.39 E-value=8.6e-14 Score=121.14 Aligned_cols=133 Identities=28% Similarity=0.309 Sum_probs=77.8
Q ss_pred CCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCC
Q psy4257 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221 (419)
Q Consensus 142 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 221 (419)
++.|+++||++|.|+.++. .+.-.+.++.|++++|.+..+.. +..+++|+.|||++|.++.+ ..+-..+.++
T Consensus 283 Wq~LtelDLS~N~I~~iDE------SvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNI 354 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDE------SVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGNI 354 (490)
T ss_pred Hhhhhhccccccchhhhhh------hhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcCE
Confidence 4456666666666655432 24445566666666666665543 55566666666666666555 3344455566
Q ss_pred cEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccccchh
Q psy4257 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKAINIQ 284 (419)
Q Consensus 222 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (419)
+.|.|+.|.|.++. .+..+-+|..||+++|+|..+. .+++.+|.|+++.|.+|.|..++..
T Consensus 355 KtL~La~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 355 KTLKLAQNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eeeehhhhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 66666666665543 2333446666666666666655 3466666666666666666665543
No 35
>KOG1909|consensus
Probab=99.36 E-value=6.1e-14 Score=124.51 Aligned_cols=243 Identities=20% Similarity=0.189 Sum_probs=128.5
Q ss_pred cccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCccc----C-------hhhhcCCCCCCEEEccCCcCc-
Q psy4257 47 LFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMV----R-------RDEFQNLHNLDSISLQNNQIT- 109 (419)
Q Consensus 47 ~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~----~-------~~~~~~~~~L~~L~L~~n~l~- 109 (419)
.+..++.|+|++|.|.. +...+...++|+..+++.- ++|. . ..++.++++|++|+|++|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 34445555555555542 3334444555555555432 1111 1 124456667777777777665
Q ss_pred -cc---cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257 110 -SM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185 (419)
Q Consensus 110 -~i---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 185 (419)
.+ ...+.++..|++|+|.+|.+.......++. .|..|. .+ .....-..|+.+.+.+|++.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~------------kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN------------KKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH------------hccCCCcceEEEEeeccccc
Confidence 12 234456667777777777765332222111 011000 00 01223345555555555554
Q ss_pred Cc-----hhhhcCCCCCcEEEcCCCCCCCc----CcccCCCCCCCcEEEccCCcCcccC----chhccCCCCCceEeCcC
Q psy4257 186 NL-----DGALMGIHGLSRLDLSHNKLRTI----SPDDFIGLDSLKMLDISHNLLTTLE----ETSKTFLPALEELFVSH 252 (419)
Q Consensus 186 ~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~ 252 (419)
+- ...|...+.|+.+.+..|.|..- ....|..+++|++|||.+|-++.-. ...+..+++|++|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 32 23455566777777777766321 2344566777777777777766432 22344566777777777
Q ss_pred CcccccC-----ccC-CCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257 253 NSLTRLD-----KDF-HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309 (419)
Q Consensus 253 N~i~~l~-----~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~ 309 (419)
|.+..=. ..+ ...++|+.|.+.+|.|+.-...+... .+...+.|..|.|+||.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~---~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAA---CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHH---HHhcchhhHHhcCCcccc
Confidence 7765421 111 33677778888888776433333222 122366777788888877
No 36
>KOG3207|consensus
Probab=99.36 E-value=1.5e-13 Score=125.40 Aligned_cols=204 Identities=21% Similarity=0.288 Sum_probs=115.5
Q ss_pred ccccceeecccccCccCcc--ccccccccceeecccccccCc---hhhhcCCCCCCEEecCCCCCcccChhh-hcCCCCC
Q psy4257 25 LSKLQLLVIEQNQLEALPS--DIQLFSQLGSLYANNNRITSL---DGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNL 98 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~--~~~~~~~L~~L~l~~n~i~~l---~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L 98 (419)
+.+|+.+.|.++.+...+. ....|++++.|+|+.|-+... -.....+++|+.|+++.|++....... -..+..|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 6667777777776665542 456677777777777766653 244556777777777777764332211 1245677
Q ss_pred CEEEccCCcCc--cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccE
Q psy4257 99 DSISLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176 (419)
Q Consensus 99 ~~L~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~ 176 (419)
+.|.|+.|.++ .+...+..+|+|+.|+|..|...........-++.|+.|||++|++...+.. .....++.|+.
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~----~~~~~l~~L~~ 275 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG----YKVGTLPGLNQ 275 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc----cccccccchhh
Confidence 77777777776 3334456667777777777753322223334456677777777776655421 13445556666
Q ss_pred EEcCCCCCcCch--hh-----hcCCCCCcEEEcCCCCCCCcC-cccCCCCCCCcEEEccCCcCc
Q psy4257 177 LKLQHNEIENLD--GA-----LMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLT 232 (419)
Q Consensus 177 L~l~~n~l~~~~--~~-----~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~ 232 (419)
|+++.+.+.++. .. ...+++|++|+++.|+|.... ...+..+.+|+.|.+..|.+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 666666655442 11 133455666666666554321 122233445555555555544
No 37
>KOG1859|consensus
Probab=99.22 E-value=1.8e-13 Score=131.93 Aligned_cols=190 Identities=24% Similarity=0.311 Sum_probs=138.0
Q ss_pred cccccCCccCcEEecccccccccChhhhcCC-CCccEEEcCCCCCccccC----CCCCCCcccCcccccEEEcCCCCCcC
Q psy4257 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL-KRLRTVDLSYNKINKFGT----RNEGKNQVQGVTNIFELKLQHNEIEN 186 (419)
Q Consensus 112 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~----~~~~~~~~~~~~~L~~L~l~~n~l~~ 186 (419)
|-.+..+.+|+.|.++++.+... ..+..+ ..|++| +..|.+..+.. .......--.+..|...+++.|.+..
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~L-IC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKL-ICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhh-hhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh
Confidence 45667788999999999887652 222222 223333 23333322110 00000011124568888999999999
Q ss_pred chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCC
Q psy4257 187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLP 266 (419)
Q Consensus 187 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~ 266 (419)
+...+.-++.|+.|+|++|++..+. .+..+++|++|||++|.+..++...-.++. |..|.|++|.++.+- ++.++.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~-gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLR-GIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhh-hHHhhh
Confidence 9988988999999999999999874 788999999999999999998866555564 999999999999874 678899
Q ss_pred CcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257 267 VLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
+|+.||+++|-|.+...-.. +..+..|+.|+|+|||+.|...
T Consensus 255 sL~~LDlsyNll~~hseL~p------LwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEP------LWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhhccchhHhhhhcchhhhH------HHHHHHHHHHhhcCCccccCHH
Confidence 99999999999876543321 2236778899999999988653
No 38
>KOG4658|consensus
Probab=99.08 E-value=1.3e-10 Score=120.18 Aligned_cols=291 Identities=22% Similarity=0.259 Sum_probs=155.9
Q ss_pred CCCcEEeccccc--ccccccc-cccccccceeecccc-cCccCccccccccccceeecccccccCchhhhcCCCCCCEEe
Q psy4257 3 TDLNWLFLNNNR--LKSLEGQ-LGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN 78 (419)
Q Consensus 3 ~~L~~L~l~~n~--l~~l~~~-~~~~~~L~~L~L~~n-~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~ 78 (419)
++|+.|-+..|. +..++.. |..++.|+.|||++| .+..+|..++.+-+|++|++++..+..+|..++.+..|.+|+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheec
Confidence 456677777775 5555433 444777777777765 456777777777777777777777777777777777777777
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc---ccccCCccCcEEecccccccccChhhhcCCCCcc----EEEcC
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN---SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLS 151 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~ 151 (419)
+..+.-....+.....+.+|++|.+..-....-. ..+..+.+|+.+....... .....+..+..|. .+.+.
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhc
Confidence 7776644444555666777777777655422111 2223344444444432222 1112222333322 22222
Q ss_pred CCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchh-hh-----cC-CCCCcEEEcCCCC-CCCcCcccCCCCCCCcE
Q psy4257 152 YNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-AL-----MG-IHGLSRLDLSHNK-LRTISPDDFIGLDSLKM 223 (419)
Q Consensus 152 ~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~-----~~-l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 223 (419)
++.... ....+..+.+|+.|.+.++.+.++.. .. .. ++++..+...++. .... .+....++|+.
T Consensus 703 ~~~~~~------~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l--~~~~f~~~L~~ 774 (889)
T KOG4658|consen 703 GCSKRT------LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL--TWLLFAPHLTS 774 (889)
T ss_pred ccccce------eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc--chhhccCcccE
Confidence 222111 12245667888888888888764421 11 10 2223222222222 2222 22233488999
Q ss_pred EEccCCcCcccCchhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCccee
Q psy4257 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301 (419)
Q Consensus 224 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 301 (419)
|.+..+....-+......+..+..+.+..+.+..++ ....+++++..+.+.+=.+..+..... ..+..+|.+.+
T Consensus 775 l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~----p~l~~~P~~~~ 850 (889)
T KOG4658|consen 775 LSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEEC----PKLGKLPLLST 850 (889)
T ss_pred EEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcC----cccccCccccc
Confidence 999888765444333444555665566666665553 334555666666665544443332210 01223555555
Q ss_pred EEecCC
Q psy4257 302 IYLEGN 307 (419)
Q Consensus 302 l~l~~N 307 (419)
+.+.++
T Consensus 851 ~~i~~~ 856 (889)
T KOG4658|consen 851 LTIVGC 856 (889)
T ss_pred cceecc
Confidence 555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.1e-10 Score=80.08 Aligned_cols=59 Identities=44% Similarity=0.604 Sum_probs=30.6
Q ss_pred CCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCc
Q psy4257 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS 254 (419)
Q Consensus 196 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 254 (419)
+|++|++++|++..+.+.+|.++++|++|++++|.+..+++..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555555544555555555555555555555555555555555555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=3.3e-10 Score=77.77 Aligned_cols=60 Identities=42% Similarity=0.553 Sum_probs=52.2
Q ss_pred CCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcc
Q psy4257 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNI 278 (419)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l 278 (419)
++|++|++++|++..++...|..+++|++|++++|.|..++ ..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46889999999999998888888999999999999998887 5688899999999988875
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.96 E-value=1.5e-09 Score=109.85 Aligned_cols=111 Identities=23% Similarity=0.226 Sum_probs=90.6
Q ss_pred CcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCC
Q psy4257 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAH 275 (419)
Q Consensus 197 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~ 275 (419)
++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|++|++.+ +|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 7789999999988888889999999999999999987777778889999999999999985 778889999999999999
Q ss_pred CcccccchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257 276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313 (419)
Q Consensus 276 N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 313 (419)
|++++.-+..+... ...+..+++.+|+..|.+
T Consensus 500 N~l~g~iP~~l~~~------~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 500 NSLSGRVPAALGGR------LLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcccccCChHHhhc------cccCceEEecCCccccCC
Confidence 99985443322210 234557889999988864
No 42
>KOG4658|consensus
Probab=98.93 E-value=6.4e-10 Score=115.16 Aligned_cols=130 Identities=21% Similarity=0.294 Sum_probs=105.7
Q ss_pred cccccceeecccccCccCccccccccccceeeccccc--ccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257 24 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR--ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100 (419)
Q Consensus 24 ~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~--i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 100 (419)
.....+++.+.+|.+..++... .++.|++|-+.+|. +..++ +.|..++.|++|||++|.--+-.|..++++-+|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 3567888888888888776554 34479999888886 56664 56888999999999988766666788999999999
Q ss_pred EEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCC
Q psy4257 101 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154 (419)
Q Consensus 101 L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 154 (419)
|++++..+..+|.++.++.+|.+|++..+......+.....+.+|++|.+....
T Consensus 600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999999999999999999887655567777778999999887654
No 43
>KOG1859|consensus
Probab=98.87 E-value=4.5e-11 Score=115.70 Aligned_cols=176 Identities=25% Similarity=0.363 Sum_probs=124.2
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCc-----------cCccccccccccceeecccccccCchhhhcC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE-----------ALPSDIQLFSQLGSLYANNNRITSLDGLLRG 70 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~-----------~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~ 70 (419)
++.|+.|.|.++.|....+-..--..|++|...+. +. ++-.++ .+..|...+++.|.+..+..++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP-VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch-hhhhHhhhhcchhhHHhHHHHHHH
Confidence 45666666666666543332222334444433322 11 111111 124677778888888888888888
Q ss_pred CCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEE
Q psy4257 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 149 (419)
Q Consensus 71 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 149 (419)
++.|+.|+|++|+++.+. .+..+++|++|||+.|.+..+|. ...++ +|..|.|++|.++.+ ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccc
Confidence 999999999999999884 78899999999999999998874 23444 499999999998875 4678889999999
Q ss_pred cCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch
Q psy4257 150 LSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD 188 (419)
Q Consensus 150 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 188 (419)
+++|-|.+...- ..+..+..|+.|.|.+|.+-.-|
T Consensus 261 lsyNll~~hseL----~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 261 LSYNLLSEHSEL----EPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhHhhhhcchhh----hHHHHHHHHHHHhhcCCccccCH
Confidence 999987654321 13456788999999999887544
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=9e-09 Score=104.29 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=88.4
Q ss_pred CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcC
Q psy4257 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151 (419)
Q Consensus 73 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 151 (419)
.++.|+|++|.+.+..+..+..+.+|+.|+|++|.+. .+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999999988889999999999999999997 678889999999999999999999889999999999999999
Q ss_pred CCCCccccCCCCCCCccc-CcccccEEEcCCCC
Q psy4257 152 YNKINKFGTRNEGKNQVQ-GVTNIFELKLQHNE 183 (419)
Q Consensus 152 ~n~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~ 183 (419)
+|++.+..+. .+. ...++..+++.+|.
T Consensus 499 ~N~l~g~iP~-----~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPA-----ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCCh-----HHhhccccCceEEecCCc
Confidence 9988754332 122 23456678888885
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.76 E-value=2.5e-09 Score=92.42 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=78.2
Q ss_pred ccccceeecccccCcc-----CccccccccccceeecccccccC-----------chhhhcCCCCCCEEecCCCCCcccC
Q psy4257 25 LSKLQLLVIEQNQLEA-----LPSDIQLFSQLGSLYANNNRITS-----------LDGLLRGLTKLQVFNMDFNQITMVR 88 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~-----i~~~~~~~~~L~~L~l~~n~i~~-----------l~~~~~~l~~L~~L~l~~n~l~~~~ 88 (419)
+..+..++|++|.|.. +...+..-.+|+..++++-.... +-.++.+|++|+..+||.|.+..-.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5666677777776652 22234444556666555432111 2234567777888888877765443
Q ss_pred h----hhhcCCCCCCEEEccCCcCcccc--------------ccccCCccCcEEecccccccccChhh----hcCCCCcc
Q psy4257 89 R----DEFQNLHNLDSISLQNNQITSMN--------------SSLSGLTKLAYLYLSHNQLTEFLLDD----IRGLKRLR 146 (419)
Q Consensus 89 ~----~~~~~~~~L~~L~L~~n~l~~i~--------------~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~ 146 (419)
+ +.++....|++|.+++|.+.-+. .....-+.|+...+..|++....... +..-.+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 3 34456677788888877766331 11234467888888888876543322 22225778
Q ss_pred EEEcCCCCCcc
Q psy4257 147 TVDLSYNKINK 157 (419)
Q Consensus 147 ~L~l~~n~l~~ 157 (419)
.+.+.+|.|.-
T Consensus 189 ~vki~qNgIrp 199 (388)
T COG5238 189 EVKIQQNGIRP 199 (388)
T ss_pred eEEeeecCcCc
Confidence 88888887753
No 46
>KOG4579|consensus
Probab=98.74 E-value=6.5e-10 Score=86.13 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=99.7
Q ss_pred cccEEEcCCCCCcCchhhh---cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEe
Q psy4257 173 NIFELKLQHNEIENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELF 249 (419)
Q Consensus 173 ~L~~L~l~~n~l~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 249 (419)
.+..++|+.|++..++... .....|+..+|++|.+...++..-..++.++.|+|++|.|.+++.+ +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence 3455667777666555443 4455677788899988887555555567888999999999998877 77889999999
Q ss_pred CcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257 250 VSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 250 L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
++.|.+...|+.+..+.++-.||..+|.+..|+.+.+... . .-.+.+.++||.-.|.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~------~--~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSS------L--PALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccc------c--HHHHHhcCCcccccCc
Confidence 9999999888887778899999999999998888755321 2 2234567888877664
No 47
>KOG2982|consensus
Probab=98.72 E-value=3.4e-09 Score=92.70 Aligned_cols=106 Identities=24% Similarity=0.320 Sum_probs=75.8
Q ss_pred ccceeecccccCccCccc--c-ccccccceeecccccccC---chhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257 27 KLQLLVIEQNQLEALPSD--I-QLFSQLGSLYANNNRITS---LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~~--~-~~~~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 100 (419)
-++.|.+.++.|....+. | ..+..++.|||.+|.|+. |...+.+++.|+.|+++.|++.......-....+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 445666777777655322 3 456788999999998886 5567788999999999999887654322245678899
Q ss_pred EEccCCcCc--cccccccCCccCcEEeccccccc
Q psy4257 101 ISLQNNQIT--SMNSSLSGLTKLAYLYLSHNQLT 132 (419)
Q Consensus 101 L~L~~n~l~--~i~~~l~~l~~L~~L~l~~n~l~ 132 (419)
|.|.+..+. .....+..+|.++.|.++.|.+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 999888665 44456777888888888888544
No 48
>KOG2120|consensus
Probab=98.64 E-value=1.2e-09 Score=95.53 Aligned_cols=174 Identities=18% Similarity=0.111 Sum_probs=87.6
Q ss_pred ccceeecccccCc--cCccccccccccceeecccccccC-chhhhcCCCCCCEEecCCCC-CcccCh-hhhcCCCCCCEE
Q psy4257 27 KLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDFNQ-ITMVRR-DEFQNLHNLDSI 101 (419)
Q Consensus 27 ~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~~~L~~L 101 (419)
+|++|||++..|+ .+-.-++.|.+|+.|.|.++++.. |-..++...+|+.|+++.+. ++.... -.|.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666666666665 232335666666666666666664 44445555666666666543 332211 124556666666
Q ss_pred EccCCcCccc--cccccC-CccCcEEecccccc--ccc-ChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCccccc
Q psy4257 102 SLQNNQITSM--NSSLSG-LTKLAYLYLSHNQL--TEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175 (419)
Q Consensus 102 ~L~~n~l~~i--~~~l~~-l~~L~~L~l~~n~l--~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~ 175 (419)
+|++|.+..- -..+.+ -++|+.|+|+++.- ... ..-....+++|..|||++|..-.-+ ....+..++.|+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~----~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND----CFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch----HHHHHHhcchhe
Confidence 6666654411 001111 13566666665531 111 1112244566666666665332111 112344456666
Q ss_pred EEEcCCCCCcCchh---hhcCCCCCcEEEcCCC
Q psy4257 176 ELKLQHNEIENLDG---ALMGIHGLSRLDLSHN 205 (419)
Q Consensus 176 ~L~l~~n~l~~~~~---~~~~l~~L~~L~Ls~n 205 (419)
+|.++.|..- +|. .+...+.|.+|+..++
T Consensus 342 ~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 6666666432 121 2355677777777664
No 49
>KOG1644|consensus
Probab=98.64 E-value=3.8e-08 Score=81.60 Aligned_cols=125 Identities=26% Similarity=0.329 Sum_probs=89.6
Q ss_pred cceeecccccCccCccccc-cccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257 28 LQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106 (419)
Q Consensus 28 L~~L~L~~n~l~~i~~~~~-~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 106 (419)
=+.++|.+.++..+-. ++ ...+...+||++|.+..++. |.+++.|..|.+.+|+|+.+.+.--..+++|+.|.|.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4566777666664422 22 23467778888888887765 678888888888888888888776666778888888888
Q ss_pred cCcccc--ccccCCccCcEEecccccccccC---hhhhcCCCCccEEEcCCCC
Q psy4257 107 QITSMN--SSLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDLSYNK 154 (419)
Q Consensus 107 ~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~ 154 (419)
.|..+. ..+..+++|++|.+-+|.++... -..+..+++|+.||+.+-.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 887663 35677888888888888876532 2345667888888876643
No 50
>KOG2982|consensus
Probab=98.63 E-value=6.1e-09 Score=91.17 Aligned_cols=197 Identities=21% Similarity=0.281 Sum_probs=111.3
Q ss_pred CCCEEecCCCCCcccChh-hh-cCCCCCCEEEccCCcCccc---cccccCCccCcEEecccccccccChhhhcCCCCccE
Q psy4257 73 KLQVFNMDFNQITMVRRD-EF-QNLHNLDSISLQNNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147 (419)
Q Consensus 73 ~L~~L~l~~n~l~~~~~~-~~-~~~~~L~~L~L~~n~l~~i---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 147 (419)
.++.|.+.++.|..+... .| ..+..++.++|.+|.|+.. ...+.++|.|+.|+|+.|++...+...-..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 344445555555443321 12 2345566666666666633 234456666666666666665432211134456666
Q ss_pred EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc----------hh---hhcCCCCCcEEEcCCCCCCCcCccc
Q psy4257 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL----------DG---ALMGIHGLSRLDLSHNKLRTISPDD 214 (419)
Q Consensus 148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------~~---~~~~l~~L~~L~Ls~n~l~~~~~~~ 214 (419)
|-|.+..+..... ...+..++.+++|+++.|.+..+ .. .+...+.+..++++-|++..+
T Consensus 126 lVLNgT~L~w~~~----~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~---- 197 (418)
T KOG2982|consen 126 LVLNGTGLSWTQS----TSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI---- 197 (418)
T ss_pred EEEcCCCCChhhh----hhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh----
Confidence 6666665543221 12344455556666666543321 10 111222233333333333333
Q ss_pred CCCCCCCcEEEccCCcCcccCc-hhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEecCCCcccc
Q psy4257 215 FIGLDSLKMLDISHNLLTTLEE-TSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNNIKA 280 (419)
Q Consensus 215 ~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~L~~N~l~~ 280 (419)
++++..+.+..|.+.+... ..+..++.+.-|+|+.|+|.++. +.+.+++.|..|.+.+|.+..
T Consensus 198 ---Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 ---FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ---cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4678888888888876543 34556788889999999998876 568889999999999998764
No 51
>KOG1644|consensus
Probab=98.58 E-value=1.1e-07 Score=78.95 Aligned_cols=108 Identities=24% Similarity=0.359 Sum_probs=81.4
Q ss_pred CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC--ccCCCCCCcCEEe
Q psy4257 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKAD 272 (419)
Q Consensus 195 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~--~~~~~l~~L~~L~ 272 (419)
.....+||++|.+..+ ..|..++.|..|.|.+|+|+.|.+.....+++|..|.|.+|.|..+. ..+..++.|+.|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566788888887665 45777888888888888888888777667888888888888888765 3467788888888
Q ss_pred cCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257 273 LAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 273 L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
+-+|.++.-...... .+..+++++.+++.+=.
T Consensus 120 ll~Npv~~k~~YR~y----vl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLY----VLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeE----EEEecCcceEeehhhhh
Confidence 888888765544322 35568888888887643
No 52
>KOG2120|consensus
Probab=98.57 E-value=2.5e-09 Score=93.58 Aligned_cols=176 Identities=23% Similarity=0.191 Sum_probs=101.6
Q ss_pred ccceeecccccccC--chhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCcccc--ccccCCccCcEE
Q psy4257 50 QLGSLYANNNRITS--LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMN--SSLSGLTKLAYL 124 (419)
Q Consensus 50 ~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~--~~l~~l~~L~~L 124 (419)
.|++|||++..|+. +-..+..|.+|+.|.+.++++..-....++...+|+.|+|+.+ .++... -.+.++..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58888888887774 4566777888888888888888777777888888888888876 455332 246777888888
Q ss_pred ecccccccccChh-hhcC-CCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC-CcC-chhhhcCCCCCcEE
Q psy4257 125 YLSHNQLTEFLLD-DIRG-LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE-IEN-LDGALMGIHGLSRL 200 (419)
Q Consensus 125 ~l~~n~l~~~~~~-~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~l~~L~~L 200 (419)
+|++|.+...... .+.+ -++|..|++++++=.-... ......+.+++|.+|||++|. ++. .-..|..++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 8888876543211 1111 2456777777653110000 011123445566666666553 221 12334455555665
Q ss_pred EcCCCCCCCcCccc---CCCCCCCcEEEccCC
Q psy4257 201 DLSHNKLRTISPDD---FIGLDSLKMLDISHN 229 (419)
Q Consensus 201 ~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n 229 (419)
.++.|.. ++|.. |...+.|.+||+.++
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 5555532 22322 233445555554443
No 53
>KOG4579|consensus
Probab=98.52 E-value=5.7e-09 Score=80.97 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=69.8
Q ss_pred ccceeecccccCccCccc---cccccccceeecccccccCchhhhcC-CCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 27 KLQLLVIEQNQLEALPSD---IQLFSQLGSLYANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~~---~~~~~~L~~L~l~~n~i~~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
.+..++|++|++-.+++. +.....|+..+|++|.+..+|..|.. .+.++.|++++|+|..++.+ ++.++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence 455666666666555443 34444555667777777766644433 34667777777777776554 77777777777
Q ss_pred ccCCcCccccccccCCccCcEEecccccccccChh
Q psy4257 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 137 (419)
Q Consensus 103 L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~ 137 (419)
++.|.+...|..+..+.+|..|+..+|.+..+..+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77777776666666677777777777766665444
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.44 E-value=2.8e-08 Score=86.05 Aligned_cols=197 Identities=17% Similarity=0.146 Sum_probs=101.4
Q ss_pred cCCccCcEEecccccccccChh----hhcCCCCccEEEcCCCCCccccCCCCC--------CCcccCcccccEEEcCCCC
Q psy4257 116 SGLTKLAYLYLSHNQLTEFLLD----DIRGLKRLRTVDLSYNKINKFGTRNEG--------KNQVQGVTNIFELKLQHNE 183 (419)
Q Consensus 116 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~n~ 183 (419)
..|++|+.++|++|.+....+. .+.+-..|.+|.+++|.+.-+.+.... ......-+.|+.+.+.+|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4445555555555554432221 223334555555555554433222111 0112334567777777777
Q ss_pred CcCchh-----hhcCCCCCcEEEcCCCCCCCc--Ccc---cCCCCCCCcEEEccCCcCcccCch----hccCCCCCceEe
Q psy4257 184 IENLDG-----ALMGIHGLSRLDLSHNKLRTI--SPD---DFIGLDSLKMLDISHNLLTTLEET----SKTFLPALEELF 249 (419)
Q Consensus 184 l~~~~~-----~~~~l~~L~~L~Ls~n~l~~~--~~~---~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ 249 (419)
+.+.+. .+..-..|+.+.+..|.|..- ..- .+..+.+|++|||.+|-++..... ++...+.|++|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 765542 122234677777877776432 111 123457788888888877654322 333455678888
Q ss_pred CcCCcccccC-----ccC--CCCCCcCEEecCCCcccc-cchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257 250 VSHNSLTRLD-----KDF--HGLPVLCKADLAHNNIKA-INIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313 (419)
Q Consensus 250 L~~N~i~~l~-----~~~--~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 313 (419)
+.+|-++.-. +.| ...++|..|-..+|.+.. +-...+.... .-..++-|..+.+.||.+.-+.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~-e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF-EQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh-hhcccHHHHHHHHccCcchhHH
Confidence 8888765422 112 235677778888876542 1111000000 0112556666778888875443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=4.6e-07 Score=56.95 Aligned_cols=39 Identities=38% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccc
Q psy4257 244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282 (419)
Q Consensus 244 ~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~ 282 (419)
+|++|++++|+|+.++..+..+++|+.|++++|+|+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666555666666666666666666543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=6.2e-07 Score=56.38 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=17.8
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 41 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i 41 (419)
+|++|++++|.|+.++..+..+++|+.|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 44555555555555444444455555555555554443
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=8.7e-06 Score=76.53 Aligned_cols=136 Identities=13% Similarity=0.226 Sum_probs=81.5
Q ss_pred hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccc-cccccChhhhcCCCCc
Q psy4257 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRL 145 (419)
Q Consensus 68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L 145 (419)
+..+.+++.|++++|.+..++ .+ ..+|+.|.++++ .++.+|..+. .+|++|++++| .+..+ ..+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sL-------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGL-------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccc-------cccc
Confidence 445688889999988888775 12 246888988874 6667776553 57888888887 44432 2357
Q ss_pred cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC-C--cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc
Q psy4257 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE-I--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222 (419)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 222 (419)
+.|++..+....+. .-.++|+.|.+.+++ . ..++. .-..+|++|++++|....+ |..+. .+|+
T Consensus 115 e~L~L~~n~~~~L~---------~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~L-P~~LP--~SLk 180 (426)
T PRK15386 115 RSLEIKGSATDSIK---------NVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIIL-PEKLP--ESLQ 180 (426)
T ss_pred ceEEeCCCCCcccc---------cCcchHhheecccccccccccccc--ccCCcccEEEecCCCcccC-ccccc--ccCc
Confidence 77777766543321 112356666664432 1 11111 1124677888877765433 33343 5777
Q ss_pred EEEccCCc
Q psy4257 223 MLDISHNL 230 (419)
Q Consensus 223 ~L~L~~n~ 230 (419)
.|+++.+.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 77777654
No 58
>KOG3665|consensus
Probab=98.12 E-value=1.3e-06 Score=88.60 Aligned_cols=81 Identities=25% Similarity=0.318 Sum_probs=40.2
Q ss_pred ccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcc-cChhhhcCCCCCCEE
Q psy4257 25 LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSI 101 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L 101 (419)
+|.|++|.+++-.+. ++......+++|..||+++..++.+. .++++++|+.|.+.+=.+.. -....+.++++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-HHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 555666655555443 22222345555555555555555552 25555555555555444332 112234455555555
Q ss_pred EccCC
Q psy4257 102 SLQNN 106 (419)
Q Consensus 102 ~L~~n 106 (419)
|++..
T Consensus 226 DIS~~ 230 (699)
T KOG3665|consen 226 DISRD 230 (699)
T ss_pred ecccc
Confidence 55554
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.10 E-value=2.6e-05 Score=73.43 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=90.7
Q ss_pred cccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcE
Q psy4257 45 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAY 123 (419)
Q Consensus 45 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~ 123 (419)
+..+.+++.|++++|.+..+|. + ..+|+.|.+++|.--...++.+ ..+|+.|.+++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4457899999999999998882 2 2479999999854333334434 258999999998 7776654 4777
Q ss_pred EecccccccccChhhhcCC-CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEc
Q psy4257 124 LYLSHNQLTEFLLDDIRGL-KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 202 (419)
Q Consensus 124 L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L 202 (419)
|++..+.... +..+ ++|+.|.+.+++...... . ...-..+|+.|.+++|....+|..+. .+|+.|++
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~---l--p~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQAR---I--DNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccc---c--ccccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence 7777655432 2222 457788875433111000 0 01123689999999998766664443 57999999
Q ss_pred CCCC
Q psy4257 203 SHNK 206 (419)
Q Consensus 203 s~n~ 206 (419)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8764
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.02 E-value=1.9e-05 Score=63.08 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=4.6
Q ss_pred cCCCCCCCcEEEc
Q psy4257 214 DFIGLDSLKMLDI 226 (419)
Q Consensus 214 ~~~~l~~L~~L~L 226 (419)
.|..+.+|+.+++
T Consensus 76 ~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 76 AFSNCTNLKNIDI 88 (129)
T ss_dssp TTTT-TTECEEEE
T ss_pred ccccccccccccc
Confidence 3333333444433
No 61
>KOG2123|consensus
Probab=98.00 E-value=3.2e-07 Score=79.81 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=53.6
Q ss_pred cccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEec
Q psy4257 49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYL 126 (419)
Q Consensus 49 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l 126 (419)
.+.+.|++.+|.+..|.- ...|+.|+.|.|+-|+|+.+.+ |..|.+|++|+|..|.|.++. ..+.++++|+.|+|
T Consensus 19 ~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344445555555554432 3455666666666666665533 555666666666666666553 24566666666666
Q ss_pred ccccccccCh-----hhhcCCCCccEEE
Q psy4257 127 SHNQLTEFLL-----DDIRGLKRLRTVD 149 (419)
Q Consensus 127 ~~n~l~~~~~-----~~~~~l~~L~~L~ 149 (419)
..|.-.+... ..+.-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666544322 2344456665554
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.98 E-value=3.1e-05 Score=61.78 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=12.6
Q ss_pred hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 105 (419)
Q Consensus 68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 105 (419)
|.++.+|+.+.+.. .+..+...+|.++.+|+.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 34444444444442 34444444444444444444433
No 63
>KOG2123|consensus
Probab=97.97 E-value=2.5e-07 Score=80.51 Aligned_cols=105 Identities=24% Similarity=0.276 Sum_probs=81.8
Q ss_pred CCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccC-hhhhcCCCCccEEE
Q psy4257 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVD 149 (419)
Q Consensus 71 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 149 (419)
+.+.+.|++++|.|..|. ....|+.|++|.|+-|.|+++ ..+..+.+|++|+|+.|.|.++. ...+.++++|+.|+
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 567889999999999884 467899999999999999999 67899999999999999998752 24567889999999
Q ss_pred cCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257 150 LSYNKINKFGTRNEGKNQVQGVTNIFELK 178 (419)
Q Consensus 150 l~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 178 (419)
|..|.=.+..+...-...++.+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 99987654433322223445566666654
No 64
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.94 E-value=8.6e-06 Score=91.01 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=46.8
Q ss_pred ecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCC
Q psy4257 272 DLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD 340 (419)
Q Consensus 272 ~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~ 340 (419)
||++|+|+.|+...+. .+.+|+.|+|++|||.|||.+.||..|++.............|..+
T Consensus 1 DLSnN~LstLp~g~F~-------~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP 62 (2740)
T TIGR00864 1 DISNNKISTIEEGICA-------NLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGP 62 (2740)
T ss_pred CCCCCcCCccChHHhc-------cCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCC
Confidence 5788888888887654 4788999999999999999999999999875332222234456443
No 65
>KOG4341|consensus
Probab=97.87 E-value=6.9e-07 Score=82.03 Aligned_cols=112 Identities=21% Similarity=0.073 Sum_probs=54.7
Q ss_pred cCCCCCcEEEcCCCC-CCCcCcccCC-CCCCCcEEEccCCcCcccC--chhccCCCCCceEeCcCCcccc------cCcc
Q psy4257 192 MGIHGLSRLDLSHNK-LRTISPDDFI-GLDSLKMLDISHNLLTTLE--ETSKTFLPALEELFVSHNSLTR------LDKD 261 (419)
Q Consensus 192 ~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~------l~~~ 261 (419)
.+..+|+.|-+++++ ++......++ ++..|+.+++..+...... ...-.+++.|+.|.|+++.... +...
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~ 396 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS 396 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence 345566666666653 3333222222 3456666666665432211 1112346667777777653321 1222
Q ss_pred CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257 262 FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309 (419)
Q Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~ 309 (419)
-..+..|..+.|++.....- ..+. ++...++|+++++.+..-
T Consensus 397 ~c~~~~l~~lEL~n~p~i~d--~~Le----~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 397 SCSLEGLEVLELDNCPLITD--ATLE----HLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccccceeeecCCCCchH--HHHH----HHhhCcccceeeeechhh
Confidence 34455666777776654321 1111 233356777777766543
No 66
>KOG3665|consensus
Probab=97.86 E-value=8.1e-06 Score=82.99 Aligned_cols=136 Identities=20% Similarity=0.183 Sum_probs=80.7
Q ss_pred cccceeecccccccC---chhhhcCCCCCCEEecCCCCCcccC-hhhhcCCCCCCEEEccCCcCccccccccCCccCcEE
Q psy4257 49 SQLGSLYANNNRITS---LDGLLRGLTKLQVFNMDFNQITMVR-RDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124 (419)
Q Consensus 49 ~~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L 124 (419)
.+|++|++++...-. ....-..+|.|+.|.+++-.+..-. ...+.++++|..||+++.+++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 467788887754332 1122345678888887775554332 12345677888888888888877 677788888888
Q ss_pred ecccccccc-cChhhhcCCCCccEEEcCCCCCccccC-CCCCCCcccCcccccEEEcCCCCCc
Q psy4257 125 YLSHNQLTE-FLLDDIRGLKRLRTVDLSYNKINKFGT-RNEGKNQVQGVTNIFELKLQHNEIE 185 (419)
Q Consensus 125 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~ 185 (419)
.+++=.+.. .....+..+++|+.||+|..+...... .....+....+++|+.||+++..+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 877766654 223455667888888887765443220 0000112233555666666655443
No 67
>KOG2739|consensus
Probab=97.74 E-value=9.5e-06 Score=70.43 Aligned_cols=84 Identities=27% Similarity=0.414 Sum_probs=37.4
Q ss_pred ccccceeecccccCccCccccccccccceeecccc--ccc-CchhhhcCCCCCCEEecCCCCCcccCh-hhhcCCCCCCE
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN--RIT-SLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDS 100 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n--~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~ 100 (419)
+..|+.|++.+..++.+ ..|-.+++|+.|.++.| .+. +++.....+++|++|++++|+|..+.. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 44555555555555544 23444455555555555 222 133223334555555555555543211 11233344444
Q ss_pred EEccCCcCc
Q psy4257 101 ISLQNNQIT 109 (419)
Q Consensus 101 L~L~~n~l~ 109 (419)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 444444443
No 68
>KOG2739|consensus
Probab=97.63 E-value=2.6e-05 Score=67.81 Aligned_cols=104 Identities=22% Similarity=0.234 Sum_probs=76.0
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccC--c-cCccccccccccceeecccccccCch--hhhcCCCCCCE
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL--E-ALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQV 76 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l--~-~i~~~~~~~~~L~~L~l~~n~i~~l~--~~~~~l~~L~~ 76 (419)
+..|+.|.+.+..++.+. .+..+++|+.|.++.|.. . .++.....+++|++|++++|+|..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 456778888888887764 477799999999999944 3 44444566799999999999998653 23677788999
Q ss_pred EecCCCCCcccCh---hhhcCCCCCCEEEccCC
Q psy4257 77 FNMDFNQITMVRR---DEFQNLHNLDSISLQNN 106 (419)
Q Consensus 77 L~l~~n~l~~~~~---~~~~~~~~L~~L~L~~n 106 (419)
|++.+|..+.+.. ..|.-+++|++|+-...
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 9999998766433 23555566666655443
No 69
>KOG4341|consensus
Probab=97.60 E-value=9.2e-06 Score=74.84 Aligned_cols=59 Identities=24% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCCCcEEEccCCc-CcccCchhcc-CCCCCceEeCcCCcccc---cCccCCCCCCcCEEecCCC
Q psy4257 218 LDSLKMLDISHNL-LTTLEETSKT-FLPALEELFVSHNSLTR---LDKDFHGLPVLCKADLAHN 276 (419)
Q Consensus 218 l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~i~~---l~~~~~~l~~L~~L~L~~N 276 (419)
..+|++|-++.++ +++.....++ +.+.|+.+++..+.... +...-.+++.|+.+.++++
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 4555555555553 3332222221 24455555555543221 1111234455555555544
No 70
>KOG4308|consensus
Probab=97.31 E-value=2.9e-06 Score=82.56 Aligned_cols=181 Identities=28% Similarity=0.325 Sum_probs=95.9
Q ss_pred CcEEecccccccc-----cccccccccccceeecccccCcc-----Cccccccc-cccceeecccccccC-----chhhh
Q psy4257 5 LNWLFLNNNRLKS-----LEGQLGTLSKLQLLVIEQNQLEA-----LPSDIQLF-SQLGSLYANNNRITS-----LDGLL 68 (419)
Q Consensus 5 L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~L~~n~l~~-----i~~~~~~~-~~L~~L~l~~n~i~~-----l~~~~ 68 (419)
+..|.|.+|.+.. +...+...+.|..|++++|.+.. +-..+... ..|++|++..|.+.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4556666666652 22334446677777777777662 11123332 445666666666654 33445
Q ss_pred cCCCCCCEEecCCCCCcccC----hhh----hcCCCCCCEEEccCCcCccc-----cccccCCcc-CcEEeccccccccc
Q psy4257 69 RGLTKLQVFNMDFNQITMVR----RDE----FQNLHNLDSISLQNNQITSM-----NSSLSGLTK-LAYLYLSHNQLTEF 134 (419)
Q Consensus 69 ~~l~~L~~L~l~~n~l~~~~----~~~----~~~~~~L~~L~L~~n~l~~i-----~~~l~~l~~-L~~L~l~~n~l~~~ 134 (419)
.....++.++++.|.+.... ... +....++++|.+.+|.++.. ...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 55666777777777653211 111 22355667777777766522 233444444 55577777766543
Q ss_pred Ch----hhhcCC-CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257 135 LL----DDIRGL-KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN 186 (419)
Q Consensus 135 ~~----~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 186 (419)
.. ..+..+ ..++.++++.|.|....... ....+..+..++++.+..|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~-L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD-LAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHH-HHHHHhhhHHHHHhhcccCcccc
Confidence 21 223333 45567777777666543221 11223344566666666666653
No 71
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=96.88 E-value=0.0008 Score=43.79 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=24.7
Q ss_pred CccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257 307 NPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS 341 (419)
Q Consensus 307 Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~ 341 (419)
|||.|||.+.||..|++. ...........|..+.
T Consensus 1 NP~~CdC~l~~~~~w~~~-~~~~~~~~~~~C~~P~ 34 (51)
T smart00082 1 NPFICDCELRWLLRWLQA-NEHLQDPVSLRCASPS 34 (51)
T ss_pred CCccCcCCchHHHHHHHh-CCccCCCCCCEeCCcH
Confidence 899999999999999988 2223333456776553
No 72
>KOG1947|consensus
Probab=96.79 E-value=0.00034 Score=69.28 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=16.7
Q ss_pred CceEeCcCCcccccC--ccCCC-CCCcCEEecCCCc
Q psy4257 245 LEELFVSHNSLTRLD--KDFHG-LPVLCKADLAHNN 277 (419)
Q Consensus 245 L~~L~L~~N~i~~l~--~~~~~-l~~L~~L~L~~N~ 277 (419)
++.|+++.+...... ..... +..+..+++.+..
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 667777766544332 11111 4555666666654
No 73
>KOG0473|consensus
Probab=96.48 E-value=0.00013 Score=62.32 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=60.2
Q ss_pred ccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257 21 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100 (419)
Q Consensus 21 ~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 100 (419)
.+..+.+.+.||++.|++..+...|+.+..|..|+++.|.|..+|..++....+..+++..|..... |.++...+.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~-p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQ-PKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhC-CccccccCCcch
Confidence 3455666777777777776666666667777777777777777776677667777777776666555 345677777777
Q ss_pred EEccCCcCc
Q psy4257 101 ISLQNNQIT 109 (419)
Q Consensus 101 L~L~~n~l~ 109 (419)
+++.+|.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777777654
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.30 E-value=0.0015 Score=34.08 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=7.5
Q ss_pred cceeecccccCccCccc
Q psy4257 28 LQLLVIEQNQLEALPSD 44 (419)
Q Consensus 28 L~~L~L~~n~l~~i~~~ 44 (419)
|++|+|++|+|+.||..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444433
No 75
>KOG1947|consensus
Probab=96.25 E-value=0.00078 Score=66.69 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=36.6
Q ss_pred CCCCCCcEEEccCCcCcccC-chhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhccccee
Q psy4257 216 IGLDSLKMLDISHNLLTTLE-ETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF 294 (419)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 294 (419)
..+++++.+.+.++.+.... ...+.+++.|. ..+.. .......++.|++..........-.....
T Consensus 359 ~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~--------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~----- 424 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL--------RLCRSDSLRVLNLSDCRLVTDKGLRCLAD----- 424 (482)
T ss_pred hcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH--------HhccCCccceEecccCccccccchHHHhh-----
Confidence 44566666666665543333 23334444441 11111 11112227788888776543332211100
Q ss_pred cCCcceeEEecCCcccc
Q psy4257 295 GLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 295 ~~~~l~~l~l~~Np~~c 311 (419)
....+..+++.+.+..-
T Consensus 425 ~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 425 SCSNLKDLDLSGCRVIT 441 (482)
T ss_pred hhhccccCCccCccccc
Confidence 03345556666665443
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0033 Score=32.77 Aligned_cols=15 Identities=47% Similarity=0.448 Sum_probs=6.6
Q ss_pred CceEeCcCCcccccC
Q psy4257 245 LEELFVSHNSLTRLD 259 (419)
Q Consensus 245 L~~L~L~~N~i~~l~ 259 (419)
|++|+|++|+|+.+|
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 344444444444444
No 77
>KOG4308|consensus
Probab=95.95 E-value=8.1e-05 Score=72.59 Aligned_cols=181 Identities=24% Similarity=0.269 Sum_probs=102.4
Q ss_pred cceeecccccCcc-----CccccccccccceeecccccccC-----chhhhcCC-CCCCEEecCCCCCcccCh----hhh
Q psy4257 28 LQLLVIEQNQLEA-----LPSDIQLFSQLGSLYANNNRITS-----LDGLLRGL-TKLQVFNMDFNQITMVRR----DEF 92 (419)
Q Consensus 28 L~~L~L~~n~l~~-----i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l-~~L~~L~l~~n~l~~~~~----~~~ 92 (419)
+..|.|.+|.+.. +...+..+..|..|++++|.+.. +-..+... ..++.|++..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777652 22345666777777777777763 11223333 456667777777665443 334
Q ss_pred cCCCCCCEEEccCCcCccc-----cccc----cCCccCcEEecccccccccC----hhhhcCCCC-ccEEEcCCCCCccc
Q psy4257 93 QNLHNLDSISLQNNQITSM-----NSSL----SGLTKLAYLYLSHNQLTEFL----LDDIRGLKR-LRTVDLSYNKINKF 158 (419)
Q Consensus 93 ~~~~~L~~L~L~~n~l~~i-----~~~l----~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~~ 158 (419)
.....++.++++.|.+... +..+ ....++++|.+.+|.++... ...+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4466777777777766421 2222 24566777777777765321 223344444 56677777776654
Q ss_pred cCCCCCCCcccCc-ccccEEEcCCCCCcCc-----hhhhcCCCCCcEEEcCCCCCCC
Q psy4257 159 GTRNEGKNQVQGV-TNIFELKLQHNEIENL-----DGALMGIHGLSRLDLSHNKLRT 209 (419)
Q Consensus 159 ~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~-----~~~~~~l~~L~~L~Ls~n~l~~ 209 (419)
.... ....+..+ ..++.+++..|.++.- ...+..+..++.+.+++|.+..
T Consensus 249 g~~~-L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEK-LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHH-HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2111 01122233 4567777777776632 3444556677777777777643
No 78
>KOG0473|consensus
Probab=95.45 E-value=0.00052 Score=58.72 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=75.5
Q ss_pred ccCcc-ccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccC
Q psy4257 39 EALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117 (419)
Q Consensus 39 ~~i~~-~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~ 117 (419)
+++|. ++..+...+.||++.|++..+...|.-+..|..|+++.|++..++ ..+.....++.+++.+|..+..|.++..
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~-~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP-KDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred cccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh-hhHHHHHHHHHHHhhccchhhCCccccc
Confidence 34543 466677888899999988887777777888889999998887774 4577778888888889999888888888
Q ss_pred CccCcEEecccccccc
Q psy4257 118 LTKLAYLYLSHNQLTE 133 (419)
Q Consensus 118 l~~L~~L~l~~n~l~~ 133 (419)
.+.++++++..+.+..
T Consensus 110 ~~~~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFFR 125 (326)
T ss_pred cCCcchhhhccCcchH
Confidence 9999999988888654
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.20 E-value=0.011 Score=28.62 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=3.6
Q ss_pred cceeecccccCc
Q psy4257 28 LQLLVIEQNQLE 39 (419)
Q Consensus 28 L~~L~L~~n~l~ 39 (419)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 344444444433
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.97 E-value=0.015 Score=28.10 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=3.0
Q ss_pred ceEeCcCCcc
Q psy4257 246 EELFVSHNSL 255 (419)
Q Consensus 246 ~~L~L~~N~i 255 (419)
+.|+|++|++
T Consensus 4 ~~L~l~~n~L 13 (17)
T PF13504_consen 4 RTLDLSNNRL 13 (17)
T ss_dssp SEEEETSS--
T ss_pred CEEECCCCCC
Confidence 3333333333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.94 E-value=0.052 Score=29.44 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=9.3
Q ss_pred CCcEEEccCCcCcccCchhc
Q psy4257 220 SLKMLDISHNLLTTLEETSK 239 (419)
Q Consensus 220 ~L~~L~L~~n~l~~~~~~~~ 239 (419)
+|+.|+|++|+|..++...|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 44444555554444444433
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.94 E-value=0.052 Score=29.44 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=9.3
Q ss_pred CCcEEEccCCcCcccCchhc
Q psy4257 220 SLKMLDISHNLLTTLEETSK 239 (419)
Q Consensus 220 ~L~~L~L~~n~l~~~~~~~~ 239 (419)
+|+.|+|++|+|..++...|
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 44444555554444444433
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.68 E-value=0.069 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=11.3
Q ss_pred CCCCEEecCCCCCcccChhhh
Q psy4257 72 TKLQVFNMDFNQITMVRRDEF 92 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~~~~~~ 92 (419)
++|+.|+|++|+|..+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.68 E-value=0.069 Score=28.93 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=11.3
Q ss_pred CCCCEEecCCCCCcccChhhh
Q psy4257 72 TKLQVFNMDFNQITMVRRDEF 92 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~~~~~~ 92 (419)
++|+.|+|++|+|..+++..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555444
No 85
>KOG3864|consensus
Probab=93.40 E-value=0.017 Score=48.64 Aligned_cols=81 Identities=23% Similarity=0.229 Sum_probs=58.9
Q ss_pred CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc-Ccccc-ccc-cCCccCcEEeccccc-ccccChhhhcCCCCccE
Q psy4257 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-ITSMN-SSL-SGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRT 147 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~i~-~~l-~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 147 (419)
..++.++.+++.|..+.-+.+.+++.++.|.+.+|. +...- +.+ ...++|+.|+|++|. |++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 357888999999988888888888889988888873 33110 111 134688999998874 77666667777888888
Q ss_pred EEcCC
Q psy4257 148 VDLSY 152 (419)
Q Consensus 148 L~l~~ 152 (419)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 87765
No 86
>KOG3864|consensus
Probab=88.65 E-value=0.11 Score=43.82 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=37.8
Q ss_pred ccceeecccccccCch-hhhcCCCCCCEEecCCCCCcc-cChhhhc-CCCCCCEEEccCC-cCcccc-ccccCCccCcEE
Q psy4257 50 QLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM-VRRDEFQ-NLHNLDSISLQNN-QITSMN-SSLSGLTKLAYL 124 (419)
Q Consensus 50 ~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~-~~~~L~~L~L~~n-~l~~i~-~~l~~l~~L~~L 124 (419)
.++.++.++..|.... ..+..++.++.|.+.+|.--+ --.+.++ -.++|+.|+|++| +|++-. ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4555555555555432 334555555555555553211 0001111 2356666666666 555321 334555666666
Q ss_pred eccc
Q psy4257 125 YLSH 128 (419)
Q Consensus 125 ~l~~ 128 (419)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=87.53 E-value=0.46 Score=25.79 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=9.4
Q ss_pred CCCcEEeccccccccc
Q psy4257 3 TDLNWLFLNNNRLKSL 18 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l 18 (419)
++|++|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.80 E-value=0.17 Score=26.80 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=6.7
Q ss_pred CCCCEEecCCCCCccc
Q psy4257 72 TKLQVFNMDFNQITMV 87 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~ 87 (419)
++|+.|+|++|+|...
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555554433
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.50 E-value=0.54 Score=25.41 Aligned_cols=17 Identities=53% Similarity=0.636 Sum_probs=10.8
Q ss_pred CCceEeCcCCcccccCc
Q psy4257 244 ALEELFVSHNSLTRLDK 260 (419)
Q Consensus 244 ~L~~L~L~~N~i~~l~~ 260 (419)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666666666653
No 90
>KOG3763|consensus
Probab=81.34 E-value=0.86 Score=44.54 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=17.3
Q ss_pred CCCcEEEccCCcCcccCch--hccCCCCCceEeCcCC
Q psy4257 219 DSLKMLDISHNLLTTLEET--SKTFLPALEELFVSHN 253 (419)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N 253 (419)
+.+..+.|++|++..+... .-...|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4455556666655544321 1112455566666665
No 91
>KOG3763|consensus
Probab=80.10 E-value=1 Score=44.11 Aligned_cols=60 Identities=25% Similarity=0.316 Sum_probs=32.2
Q ss_pred ccccceeecccccCccCc---cccccccccceeecccc--cccCchh--hhcCCCCCCEEecCCCCCc
Q psy4257 25 LSKLQLLVIEQNQLEALP---SDIQLFSQLGSLYANNN--RITSLDG--LLRGLTKLQVFNMDFNQIT 85 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~---~~~~~~~~L~~L~l~~n--~i~~l~~--~~~~l~~L~~L~l~~n~l~ 85 (419)
.+.+..++|++|++..+. .-....++|+.|+|++| .+...++ .+++ ..|++|-+.||.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 556666666666665441 11244466677777766 3333221 1222 34667777777654
No 92
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=80.00 E-value=2.8 Score=31.05 Aligned_cols=16 Identities=0% Similarity=-0.128 Sum_probs=12.1
Q ss_pred chHHHHHHHHhhcCCc
Q psy4257 314 SMRAVIDAMETINNNT 329 (419)
Q Consensus 314 ~~~~~~~~l~~~~~~~ 329 (419)
++..+.+|+.+....+
T Consensus 4 dIlYLSrWI~qhsgiV 19 (122)
T PF11921_consen 4 DILYLSRWISQHSGIV 19 (122)
T ss_dssp GGHHHHHHHHHTCCCE
T ss_pred ccHHHHHHHHHCCCeE
Confidence 5678899999866555
No 93
>KOG1924|consensus
Probab=68.66 E-value=8.6 Score=39.35 Aligned_cols=9 Identities=33% Similarity=0.172 Sum_probs=3.4
Q ss_pred cCEEecCCC
Q psy4257 268 LCKADLAHN 276 (419)
Q Consensus 268 L~~L~L~~N 276 (419)
|+++-|-+|
T Consensus 408 LQhlllirn 416 (1102)
T KOG1924|consen 408 LQHLLLIRN 416 (1102)
T ss_pred HHHHHHHhh
Confidence 333333333
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=65.31 E-value=4.1 Score=22.38 Aligned_cols=14 Identities=14% Similarity=0.290 Sum_probs=7.5
Q ss_pred CCCEEecCCCCCcc
Q psy4257 73 KLQVFNMDFNQITM 86 (419)
Q Consensus 73 ~L~~L~l~~n~l~~ 86 (419)
+|++|+|++|.|..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555555543
No 95
>KOG4242|consensus
Probab=61.74 E-value=55 Score=31.94 Aligned_cols=233 Identities=14% Similarity=-0.047 Sum_probs=105.3
Q ss_pred CCCEEecCCCCCcccChhhhc---CCCCCCEEEccCCcCcc--c--cccccCCccCcEEeccccccccc--------Chh
Q psy4257 73 KLQVFNMDFNQITMVRRDEFQ---NLHNLDSISLQNNQITS--M--NSSLSGLTKLAYLYLSHNQLTEF--------LLD 137 (419)
Q Consensus 73 ~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~L~~n~l~~--i--~~~l~~l~~L~~L~l~~n~l~~~--------~~~ 137 (419)
.+.+++++.|....-.+..+. .-.-++.++.+...+.. . +-..+.-.+|...+++.|..... ..+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 467777777765544443222 22345566666554431 1 11223334666666666554311 112
Q ss_pred hhcCCCCccEEEcCCCCCccccCCCCC-CCcccCcccccEEEcCCCCCcCc--hhhhcCCCCCcEEEcCCCCCCCcCcc-
Q psy4257 138 DIRGLKRLRTVDLSYNKINKFGTRNEG-KNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPD- 213 (419)
Q Consensus 138 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~- 213 (419)
.|..-.++ +|++.++....-...... ...-..-..=..+++..|....- ...-.+-.++++|.++.|.+.+-...
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 22223444 556555544321100000 00000000112344444433311 11111223477888888777554222
Q ss_pred -cCCCCCCCcEEEccCCcCccc---Cc--h----hccCCCCCceEeCcCCcccccC----ccCCCCCCcCEEecCCCccc
Q psy4257 214 -DFIGLDSLKMLDISHNLLTTL---EE--T----SKTFLPALEELFVSHNSLTRLD----KDFHGLPVLCKADLAHNNIK 279 (419)
Q Consensus 214 -~~~~l~~L~~L~L~~n~l~~~---~~--~----~~~~l~~L~~L~L~~N~i~~l~----~~~~~l~~L~~L~L~~N~l~ 279 (419)
.+..-+..+.+++.+-.-..+ .. . .-....-+..+.++.|.+..-. .....-+.+..|++++|...
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 223345666777665432111 00 0 0011224567777777766532 23455677888899988877
Q ss_pred ccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257 280 AINIQLALKTQCQIFGLNSTLRIYLEGNPV 309 (419)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~ 309 (419)
.....+..+ +......+..+..+.|-.
T Consensus 454 d~gap~lpk---alq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 454 DGGAPPLPK---ALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cCCCCcCcc---ccCCCCccCCCCCCCCCc
Confidence 665544332 222233444455555543
No 96
>KOG4242|consensus
Probab=61.55 E-value=47 Score=32.41 Aligned_cols=224 Identities=20% Similarity=0.083 Sum_probs=110.9
Q ss_pred ccceeecccccCc-cCcccc---ccccccceeecccccccC--c--hhhhcCCCCCCEEecCCCCCc--------ccChh
Q psy4257 27 KLQLLVIEQNQLE-ALPSDI---QLFSQLGSLYANNNRITS--L--DGLLRGLTKLQVFNMDFNQIT--------MVRRD 90 (419)
Q Consensus 27 ~L~~L~L~~n~l~-~i~~~~---~~~~~L~~L~l~~n~i~~--l--~~~~~~l~~L~~L~l~~n~l~--------~~~~~ 90 (419)
.+..++|+.|... .+|..+ ..-.-++.++.+...+.- + +..++.-++|.+.+++.|... +...+
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 4677888887665 444322 222346667776665552 1 233445567777777777542 11223
Q ss_pred hhcCCCCCCEEEccCCcCc--cccccccCC-----ccCcEEecccccccccCh--hhhcCCCCccEEEcCCCCCccccCC
Q psy4257 91 EFQNLHNLDSISLQNNQIT--SMNSSLSGL-----TKLAYLYLSHNQLTEFLL--DDIRGLKRLRTVDLSYNKINKFGTR 161 (419)
Q Consensus 91 ~~~~~~~L~~L~L~~n~l~--~i~~~l~~l-----~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (419)
.|+.-.++ +|++.++... .++..+-.+ ..=.+++++.|...+... ..+.+ ..+++|.+..|.+.+-...
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g-~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFG-QRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccc-eeeeEeecccccccccccc
Confidence 44445566 6777666443 121111110 111345555555443211 11112 3477888887776543322
Q ss_pred CCCCCcccCcccccEEEcCCCCCcCc--hh----hh----cCCCCCcEEEcCCCCCCCcCc---ccCCCCCCCcEEEccC
Q psy4257 162 NEGKNQVQGVTNIFELKLQHNEIENL--DG----AL----MGIHGLSRLDLSHNKLRTISP---DDFIGLDSLKMLDISH 228 (419)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~l~~~--~~----~~----~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~ 228 (419)
.. .....+..+.+++.+-....+ +. .+ ....-+..+.++.+.+..-.. ..+..-+.+..|++++
T Consensus 373 vg---k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisg 449 (553)
T KOG4242|consen 373 VG---KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISG 449 (553)
T ss_pred cc---ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccC
Confidence 11 233344555555554432111 00 01 112236677888877654311 2234457888999999
Q ss_pred CcCcccCchhc----cCCCCCceEeCcCCcc
Q psy4257 229 NLLTTLEETSK----TFLPALEELFVSHNSL 255 (419)
Q Consensus 229 n~l~~~~~~~~----~~l~~L~~L~L~~N~i 255 (419)
|.........+ ....+++....+.|..
T Consensus 450 n~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 450 NGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred CCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 98776543322 2233455555555543
No 97
>PRK13042 superantigen-like protein; Reviewed
Probab=54.24 E-value=16 Score=32.75 Aligned_cols=6 Identities=50% Similarity=0.628 Sum_probs=2.2
Q ss_pred CCcccc
Q psy4257 396 PQPVET 401 (419)
Q Consensus 396 ~~~~~~ 401 (419)
|+.+|+
T Consensus 87 pq~~~~ 92 (291)
T PRK13042 87 PQSPTT 92 (291)
T ss_pred CCCCch
Confidence 333333
No 98
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.07 E-value=18 Score=43.01 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=27.7
Q ss_pred EcCCCCCCCcCcccCCCCCCCcEEEccCCcCc
Q psy4257 201 DLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232 (419)
Q Consensus 201 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 232 (419)
||++|+|+.+....|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57889999988888888889999999988765
No 99
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=32.30 E-value=2e+02 Score=23.14 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=13.9
Q ss_pred EEecCC-ccccccchHHHHHHHHh
Q psy4257 302 IYLEGN-PVLCDDSMRAVIDAMET 324 (419)
Q Consensus 302 l~l~~N-p~~c~~~~~~~~~~l~~ 324 (419)
|...|| .+-+.|++..++..+-.
T Consensus 33 LR~~Gny~Lp~~aD~NeVLkALc~ 56 (150)
T PF05687_consen 33 LRAHGNYKLPKHADNNEVLKALCR 56 (150)
T ss_pred HHHhcCCCCCCcCCHHHHHHHHHH
Confidence 445677 56666776666655544
No 100
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.04 E-value=38 Score=17.93 Aligned_cols=11 Identities=36% Similarity=0.419 Sum_probs=6.4
Q ss_pred CCcCEEecCCC
Q psy4257 266 PVLCKADLAHN 276 (419)
Q Consensus 266 ~~L~~L~L~~N 276 (419)
++|++|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45666666655
Done!