Query psy4257
Match_columns 419
No_of_seqs 464 out of 4302
Neff 10.1
Searched_HMMs 29240
Date Fri Aug 16 20:46:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 100.0 1.6E-40 5.6E-45 327.0 25.1 309 3-323 32-346 (477)
2 3v47_A TOLL-like receptor 5B a 100.0 2.1E-40 7.3E-45 324.2 25.7 329 3-340 30-437 (455)
3 3t6q_A CD180 antigen; protein- 100.0 1.7E-39 6E-44 329.0 27.4 326 4-341 255-591 (606)
4 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-39 7.2E-44 329.9 27.7 333 4-343 53-613 (635)
5 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-39 2.6E-43 318.5 27.4 320 3-340 21-510 (520)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-39 1.6E-43 325.9 25.6 217 117-341 348-589 (606)
7 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-38 1.7E-42 315.3 27.4 306 3-326 52-527 (562)
8 3o6n_A APL1; leucine-rich repe 100.0 1.2E-37 4.2E-42 298.5 24.4 305 2-321 44-363 (390)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-37 5.5E-42 318.8 24.7 332 4-341 249-655 (680)
10 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-37 1.5E-41 307.8 26.9 327 3-340 26-539 (549)
11 2z63_A TOLL-like receptor 4, v 100.0 7.4E-37 2.5E-41 307.5 26.7 164 168-340 392-560 (570)
12 3oja_B Anopheles plasmodium-re 100.0 2.4E-36 8.1E-41 305.0 24.5 304 2-320 50-368 (597)
13 3j0a_A TOLL-like receptor 5; m 100.0 2.6E-36 8.9E-41 316.3 21.5 102 239-340 476-591 (844)
14 4eco_A Uncharacterized protein 100.0 5.5E-36 1.9E-40 304.1 19.2 281 17-310 197-526 (636)
15 3zyj_A Leucine-rich repeat-con 100.0 8.1E-35 2.8E-39 283.2 26.2 259 28-325 45-307 (440)
16 2id5_A Lingo-1, leucine rich r 100.0 3.6E-35 1.2E-39 288.8 23.7 302 1-315 54-361 (477)
17 4fmz_A Internalin; leucine ric 100.0 3.6E-34 1.2E-38 270.0 28.8 286 2-314 43-328 (347)
18 3rgz_A Protein brassinosteroid 100.0 3.4E-35 1.2E-39 304.8 22.7 297 2-310 342-717 (768)
19 4fmz_A Internalin; leucine ric 100.0 5.1E-34 1.7E-38 269.0 28.5 280 2-309 65-345 (347)
20 3t6q_A CD180 antigen; protein- 100.0 2.2E-34 7.4E-39 291.7 27.1 300 3-309 33-412 (606)
21 3rgz_A Protein brassinosteroid 100.0 7.3E-35 2.5E-39 302.4 23.4 226 2-232 317-551 (768)
22 4eco_A Uncharacterized protein 100.0 5.2E-35 1.8E-39 297.0 21.5 292 1-308 204-547 (636)
23 3zyi_A Leucine-rich repeat-con 100.0 7.4E-34 2.5E-38 277.4 28.2 259 51-325 56-318 (452)
24 2z80_A TOLL-like receptor 2, v 100.0 3E-35 1E-39 278.0 17.6 300 25-340 30-343 (353)
25 2z66_A Variable lymphocyte rec 100.0 2E-34 6.7E-39 267.0 22.7 276 29-341 10-292 (306)
26 1xku_A Decorin; proteoglycan, 100.0 6.6E-34 2.2E-38 266.4 26.1 277 26-312 31-308 (330)
27 2ft3_A Biglycan; proteoglycan, 100.0 2.8E-34 9.5E-39 269.1 23.3 290 12-312 13-309 (332)
28 4ecn_A Leucine-rich repeat pro 100.0 1.7E-34 5.8E-39 298.9 23.9 292 1-308 446-787 (876)
29 3v47_A TOLL-like receptor 5B a 100.0 5E-34 1.7E-38 279.0 23.3 277 1-282 52-411 (455)
30 4ecn_A Leucine-rich repeat pro 100.0 8.1E-34 2.8E-38 293.8 25.0 271 2-275 490-785 (876)
31 3vq2_A TLR4, TOLL-like recepto 100.0 4E-34 1.4E-38 289.7 21.8 135 3-137 32-171 (606)
32 1o6v_A Internalin A; bacterial 100.0 4E-33 1.4E-37 273.3 27.1 259 3-281 46-324 (466)
33 1xku_A Decorin; proteoglycan, 100.0 1.1E-32 3.9E-37 257.9 27.3 284 4-308 32-330 (330)
34 1o6v_A Internalin A; bacterial 100.0 1.3E-32 4.3E-37 269.8 28.1 281 2-310 67-366 (466)
35 2ft3_A Biglycan; proteoglycan, 100.0 5.2E-33 1.8E-37 260.5 23.3 283 4-308 34-331 (332)
36 3o6n_A APL1; leucine-rich repe 100.0 1.2E-32 4E-37 263.9 23.8 274 25-310 44-331 (390)
37 1ziw_A TOLL-like receptor 3; i 100.0 3.3E-32 1.1E-36 279.3 28.5 303 2-311 221-598 (680)
38 2z63_A TOLL-like receptor 4, v 100.0 7E-33 2.4E-37 278.5 22.1 301 4-311 29-508 (570)
39 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-33 9.3E-38 280.3 18.5 279 4-284 6-428 (549)
40 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-32 5.5E-37 272.9 23.3 142 6-155 3-150 (520)
41 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-32 7.7E-37 274.3 24.1 292 4-311 32-487 (562)
42 1ozn_A Reticulon 4 receptor; N 100.0 9E-32 3.1E-36 246.5 25.0 238 52-326 14-254 (285)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-31 4.7E-36 260.9 27.5 275 2-311 41-353 (457)
44 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-32 1.3E-36 284.7 23.9 281 2-282 23-378 (844)
45 1p9a_G Platelet glycoprotein I 100.0 3.6E-31 1.2E-35 242.7 24.9 222 91-329 5-227 (290)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-32 4.1E-37 255.6 14.9 249 50-313 51-307 (313)
47 3oja_B Anopheles plasmodium-re 100.0 1.4E-31 4.9E-36 270.0 23.9 275 25-311 50-338 (597)
48 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-32 1.3E-36 252.2 15.7 248 26-281 50-307 (313)
49 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-30 4.2E-35 254.2 25.6 255 2-282 63-355 (457)
50 2z80_A TOLL-like receptor 2, v 100.0 3.5E-31 1.2E-35 250.2 20.1 273 4-283 32-318 (353)
51 2z62_A TOLL-like receptor 4, v 100.0 1.5E-30 5.2E-35 237.2 21.6 248 54-340 12-266 (276)
52 3zyi_A Leucine-rich repeat-con 100.0 2.5E-30 8.6E-35 252.4 24.5 246 27-280 55-304 (452)
53 3zyj_A Leucine-rich repeat-con 100.0 5.3E-30 1.8E-34 249.3 23.9 244 4-279 44-292 (440)
54 3g06_A SSPH2 (leucine-rich rep 100.0 1.6E-29 5.3E-34 253.7 27.9 258 4-311 41-298 (622)
55 2z66_A Variable lymphocyte rec 100.0 5.1E-30 1.8E-34 237.3 21.1 246 6-281 10-263 (306)
56 1jl5_A Outer protein YOPM; leu 100.0 4.4E-29 1.5E-33 243.0 25.8 161 26-209 131-291 (454)
57 3g06_A SSPH2 (leucine-rich rep 100.0 1.9E-29 6.7E-34 253.0 23.9 245 3-287 61-305 (622)
58 1jl5_A Outer protein YOPM; leu 100.0 8.9E-30 3.1E-34 247.9 20.4 249 2-281 10-272 (454)
59 2o6q_A Variable lymphocyte rec 100.0 4.2E-29 1.4E-33 226.9 23.5 215 98-326 18-235 (270)
60 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-29 1.8E-33 253.3 26.8 151 7-159 35-189 (635)
61 4fcg_A Uncharacterized protein 100.0 1.1E-29 3.6E-34 237.2 18.7 227 25-282 80-317 (328)
62 1wwl_A Monocyte differentiatio 100.0 1.5E-30 5.3E-35 241.4 12.7 252 22-281 39-311 (312)
63 1ozn_A Reticulon 4 receptor; N 100.0 8.8E-30 3E-34 233.3 17.1 221 29-256 14-238 (285)
64 3o53_A Protein LRIM1, AGAP0063 100.0 5.6E-30 1.9E-34 238.1 15.8 228 68-319 30-259 (317)
65 3o53_A Protein LRIM1, AGAP0063 100.0 1.2E-29 4E-34 236.0 13.0 255 27-305 11-270 (317)
66 4fcg_A Uncharacterized protein 100.0 4.6E-29 1.6E-33 232.8 16.8 232 49-310 81-314 (328)
67 1wwl_A Monocyte differentiatio 100.0 8.9E-30 3E-34 236.2 6.6 245 3-258 43-311 (312)
68 3oja_A Leucine-rich immune mol 100.0 4E-28 1.4E-32 238.4 18.4 218 50-314 35-254 (487)
69 3oja_A Leucine-rich immune mol 100.0 2.7E-28 9.2E-33 239.7 16.8 243 25-314 33-286 (487)
70 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-29 7.3E-34 246.5 6.2 14 296-309 397-410 (461)
71 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-29 7.4E-34 246.5 4.3 318 2-324 27-396 (461)
72 2z62_A TOLL-like receptor 4, v 99.9 1.5E-26 5.2E-31 210.7 18.7 203 50-257 29-238 (276)
73 1p9a_G Platelet glycoprotein I 99.9 4.5E-26 1.6E-30 208.7 21.2 204 45-280 6-209 (290)
74 3m19_A Variable lymphocyte rec 99.9 9.5E-26 3.3E-30 202.4 22.4 194 97-327 15-210 (251)
75 2o6q_A Variable lymphocyte rec 99.9 1.5E-25 5E-30 203.4 21.2 199 51-279 18-218 (270)
76 1h6u_A Internalin H; cell adhe 99.9 3.3E-26 1.1E-30 211.6 13.8 216 25-259 18-233 (308)
77 3rfs_A Internalin B, repeat mo 99.9 5E-26 1.7E-30 206.7 14.1 217 25-257 18-236 (272)
78 1h6u_A Internalin H; cell adhe 99.9 1.4E-25 4.6E-30 207.5 16.5 212 53-283 23-234 (308)
79 2xwt_C Thyrotropin receptor; s 99.9 1.2E-25 4.3E-30 200.1 14.9 203 38-253 23-236 (239)
80 2xwt_C Thyrotropin receptor; s 99.9 1.8E-25 6.1E-30 199.1 14.6 199 54-283 16-222 (239)
81 3goz_A Leucine-rich repeat-con 99.9 4.4E-26 1.5E-30 215.8 10.3 269 31-324 3-310 (362)
82 4ay9_X Follicle-stimulating ho 99.9 6.2E-25 2.1E-29 206.9 16.4 236 29-274 12-254 (350)
83 3rfs_A Internalin B, repeat mo 99.9 3.4E-25 1.1E-29 201.3 13.7 218 48-280 18-236 (272)
84 2xot_A Amphoterin-induced prot 99.9 9.7E-25 3.3E-29 206.4 16.5 189 99-324 21-217 (361)
85 4glp_A Monocyte differentiatio 99.9 1.1E-24 3.8E-29 201.8 14.3 227 49-280 64-308 (310)
86 4ay9_X Follicle-stimulating ho 99.9 6.8E-25 2.3E-29 206.7 12.7 243 52-314 12-262 (350)
87 2ca6_A RAN GTPase-activating p 99.9 8.1E-26 2.8E-30 216.0 5.8 114 170-283 185-320 (386)
88 2ca6_A RAN GTPase-activating p 99.9 3.7E-25 1.3E-29 211.4 9.7 263 32-326 15-333 (386)
89 2v9t_B SLIT homolog 2 protein 99.9 7E-24 2.4E-28 186.1 17.0 164 146-324 14-179 (220)
90 3goz_A Leucine-rich repeat-con 99.9 4.4E-25 1.5E-29 209.0 9.0 258 7-281 2-299 (362)
91 3e6j_A Variable lymphocyte rec 99.9 4.5E-23 1.5E-27 182.2 20.6 169 145-328 21-191 (229)
92 2v70_A SLIT-2, SLIT homolog 2 99.9 1.9E-23 6.5E-28 183.4 17.0 177 146-340 14-193 (220)
93 3cvr_A Invasion plasmid antige 99.9 7.5E-24 2.6E-28 210.1 14.8 220 73-323 60-293 (571)
94 4glp_A Monocyte differentiatio 99.9 9.4E-24 3.2E-28 195.5 14.5 225 26-257 64-308 (310)
95 3m19_A Variable lymphocyte rec 99.9 7.7E-23 2.6E-27 183.4 18.9 104 51-156 16-120 (251)
96 2ast_B S-phase kinase-associat 99.9 2.8E-24 9.5E-29 201.3 9.4 247 5-283 49-310 (336)
97 2ast_B S-phase kinase-associat 99.9 2.8E-24 9.7E-29 201.3 6.3 245 50-311 48-307 (336)
98 1h6t_A Internalin B; cell adhe 99.9 1.8E-22 6.3E-27 184.9 12.8 193 25-258 23-215 (291)
99 3ogk_B Coronatine-insensitive 99.9 1.6E-23 5.4E-28 211.3 5.2 177 46-227 217-411 (592)
100 3cvr_A Invasion plasmid antige 99.9 6.2E-22 2.1E-26 196.3 16.3 185 27-240 60-251 (571)
101 2wfh_A SLIT homolog 2 protein 99.9 7.9E-22 2.7E-26 169.3 14.3 141 175-325 13-154 (193)
102 1h6t_A Internalin B; cell adhe 99.9 6.3E-22 2.2E-26 181.3 14.1 195 49-284 24-218 (291)
103 1m9s_A Internalin B; cell inva 99.9 1.5E-21 5.3E-26 195.5 15.4 197 25-238 20-216 (605)
104 3ogk_B Coronatine-insensitive 99.9 4.7E-23 1.6E-27 207.8 3.9 299 2-311 191-527 (592)
105 1m9s_A Internalin B; cell inva 99.9 3.7E-21 1.3E-25 192.7 14.7 194 48-259 20-213 (605)
106 1w8a_A SLIT protein; signaling 99.9 1.1E-20 3.8E-25 162.1 15.5 155 175-341 11-167 (192)
107 1xeu_A Internalin C; cellular 99.8 2.8E-21 9.7E-26 174.2 9.8 172 25-236 18-189 (263)
108 2o6s_A Variable lymphocyte rec 99.8 1.4E-20 4.7E-25 163.7 13.7 126 30-157 11-138 (208)
109 2o6s_A Variable lymphocyte rec 99.8 2.8E-20 9.6E-25 161.8 15.6 178 52-266 10-189 (208)
110 2xot_A Amphoterin-induced prot 99.8 2.3E-20 7.8E-25 176.4 14.5 103 53-157 22-126 (361)
111 2p1m_B Transport inhibitor res 99.8 9.6E-22 3.3E-26 198.3 4.5 299 2-309 129-518 (594)
112 3e6j_A Variable lymphocyte rec 99.8 5.8E-20 2E-24 162.2 15.0 149 6-156 22-172 (229)
113 3sb4_A Hypothetical leucine ri 99.8 2.1E-20 7.2E-25 174.4 12.0 220 71-304 100-328 (329)
114 2v9t_B SLIT homolog 2 protein 99.8 1.2E-19 4.2E-24 159.0 16.1 151 99-279 14-165 (220)
115 4ezg_A Putative uncharacterize 99.8 2.9E-20 9.8E-25 160.2 11.7 153 23-186 41-195 (197)
116 2v70_A SLIT-2, SLIT homolog 2 99.8 9.5E-20 3.2E-24 159.7 14.5 149 6-156 14-166 (220)
117 1xeu_A Internalin C; cellular 99.8 1.5E-20 5.2E-25 169.5 9.6 171 48-259 18-188 (263)
118 2o6r_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 150.6 16.6 155 174-339 9-165 (177)
119 1dce_A Protein (RAB geranylger 99.8 4.2E-22 1.4E-26 198.4 -3.9 189 46-259 346-549 (567)
120 2p1m_B Transport inhibitor res 99.8 2.1E-21 7.2E-26 195.8 -0.3 294 2-307 183-541 (594)
121 3sb4_A Hypothetical leucine ri 99.8 2.7E-19 9.1E-24 166.9 13.9 226 40-273 83-328 (329)
122 4ezg_A Putative uncharacterize 99.8 4.2E-19 1.4E-23 152.9 13.2 154 45-233 40-195 (197)
123 1dce_A Protein (RAB geranylger 99.8 8.1E-22 2.8E-26 196.3 -7.2 203 93-303 346-566 (567)
124 4fdw_A Leucine rich hypothetic 99.8 1.2E-17 4.1E-22 159.3 21.2 260 25-308 112-381 (401)
125 4fdw_A Leucine rich hypothetic 99.8 9.8E-18 3.3E-22 159.9 19.2 235 27-277 136-381 (401)
126 3g39_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 142.1 14.4 123 197-329 11-135 (170)
127 2r9u_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 137.9 15.5 121 198-328 15-137 (174)
128 2ell_A Acidic leucine-rich nuc 99.7 6.8E-18 2.3E-22 141.4 11.1 135 25-160 23-164 (168)
129 2ell_A Acidic leucine-rich nuc 99.7 8.1E-18 2.8E-22 140.9 11.0 133 2-135 23-163 (168)
130 4b8c_D Glucose-repressible alc 99.7 1.7E-18 5.9E-23 177.6 4.7 153 4-158 174-331 (727)
131 1w8a_A SLIT protein; signaling 99.7 3.7E-17 1.3E-21 140.0 12.2 126 29-156 11-139 (192)
132 4b8c_D Glucose-repressible alc 99.7 2.3E-18 8E-23 176.6 5.3 217 25-255 172-403 (727)
133 2wfh_A SLIT homolog 2 protein 99.7 5.1E-17 1.8E-21 139.1 12.9 126 29-156 13-139 (193)
134 2je0_A Acidic leucine-rich nuc 99.7 2.6E-17 8.9E-22 134.9 10.3 127 25-152 16-149 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.7 2.4E-17 8.3E-22 139.1 8.2 135 21-157 14-154 (176)
136 2je0_A Acidic leucine-rich nuc 99.7 3.9E-17 1.4E-21 133.8 9.2 125 3-128 17-149 (149)
137 1a9n_A U2A', U2A'; complex (nu 99.7 1.1E-16 3.6E-21 135.1 7.8 130 2-133 18-154 (176)
138 2o6r_A Variable lymphocyte rec 99.7 2.2E-15 7.5E-20 127.1 14.7 88 194-281 51-139 (177)
139 2ifg_A High affinity nerve gro 99.6 1.5E-15 5.3E-20 142.4 13.9 131 200-341 13-146 (347)
140 1ds9_A Outer arm dynein; leuci 99.6 9.8E-18 3.3E-22 144.4 -2.6 111 21-134 43-155 (198)
141 4fs7_A Uncharacterized protein 99.6 4.2E-14 1.4E-18 135.0 20.4 270 21-307 66-376 (394)
142 3g39_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 121.0 12.6 109 173-283 10-119 (170)
143 4fs7_A Uncharacterized protein 99.6 1.8E-13 6.2E-18 130.6 20.0 278 1-302 69-393 (394)
144 4gt6_A Cell surface protein; l 99.5 6.6E-13 2.2E-17 126.7 22.1 287 5-308 66-368 (394)
145 1ds9_A Outer arm dynein; leuci 99.5 7.1E-16 2.4E-20 132.7 0.1 122 2-125 47-180 (198)
146 2r9u_A Variable lymphocyte rec 99.5 7.8E-14 2.7E-18 117.1 10.7 102 29-132 15-118 (174)
147 4gt6_A Cell surface protein; l 99.5 4.1E-12 1.4E-16 121.2 21.2 284 1-307 85-388 (394)
148 3un9_A NLR family member X1; l 99.4 1.5E-14 5.1E-19 136.6 0.4 162 72-257 72-253 (372)
149 3un9_A NLR family member X1; l 99.4 1.1E-14 3.9E-19 137.3 -0.5 132 25-158 46-198 (372)
150 2ifg_A High affinity nerve gro 99.3 4.7E-12 1.6E-16 118.6 10.2 103 30-133 12-117 (347)
151 4h09_A Hypothetical leucine ri 99.3 2E-10 6.9E-15 108.8 21.3 264 23-305 43-341 (379)
152 4h09_A Hypothetical leucine ri 99.3 2.8E-10 9.7E-15 107.8 22.2 266 4-287 47-353 (379)
153 3rfe_A Platelet glycoprotein I 99.2 8.8E-11 3E-15 92.9 9.2 86 247-342 12-99 (130)
154 2ra8_A Uncharacterized protein 99.1 6E-11 2.1E-15 111.0 3.7 110 45-157 135-266 (362)
155 2ra8_A Uncharacterized protein 99.0 4.9E-10 1.7E-14 104.8 7.4 101 50-152 108-228 (362)
156 1io0_A Tropomodulin; LRR prote 98.8 2E-09 6.7E-14 91.0 3.9 113 45-157 32-165 (185)
157 1io0_A Tropomodulin; LRR prote 98.8 3E-09 1E-13 89.9 4.1 114 20-133 30-165 (185)
158 3rw6_A Nuclear RNA export fact 98.5 6.8E-08 2.3E-12 85.8 4.1 103 46-149 138-257 (267)
159 3rw6_A Nuclear RNA export fact 98.4 1E-07 3.6E-12 84.6 2.7 101 25-126 140-258 (267)
160 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.8E-11 72.4 3.4 83 72-154 61-150 (176)
161 3e4g_A ATP synthase subunit S, 98.0 1.2E-06 4.2E-11 72.2 1.8 86 195-280 61-154 (176)
162 1pgv_A TMD-1, tropomodulin TMD 98.0 1.2E-05 4.1E-10 67.5 6.4 110 23-132 38-170 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.9 7E-06 2.4E-10 69.0 4.4 112 45-156 37-170 (197)
164 3rfe_A Platelet glycoprotein I 97.5 0.0002 6.9E-09 56.0 6.6 54 199-255 12-67 (130)
165 2lz0_A Uncharacterized protein 86.3 1.1 3.6E-05 32.7 4.8 49 204-253 5-53 (100)
166 2lz0_A Uncharacterized protein 76.7 6.1 0.00021 28.6 5.9 46 184-230 8-54 (100)
167 3ghp_A Cellulosomal scaffoldin 64.2 4.1 0.00014 33.3 2.7 8 302-309 153-160 (227)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=326.97 Aligned_cols=309 Identities=23% Similarity=0.337 Sum_probs=279.0
Q ss_pred CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCch-hhhcCCCCCCEEec
Q psy4257 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNM 79 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l 79 (419)
++|++|+|++|.|+.++ ..|..+++|+.|+|++|.++.+ |..|..+++|++|+|++|.+..++ ..|.++++|+.|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 47899999999999875 5788899999999999999977 678999999999999999999987 46789999999999
Q ss_pred CCCCCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257 80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
++|++.++.+..|.++++|++|++++|.+..+ +..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+..+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 99999999999999999999999999999977 45789999999999999999998888899999999999999999887
Q ss_pred cCCCCCCCcccCcccccEEEcCCCCC-cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257 159 GTRNEGKNQVQGVTNIFELKLQHNEI-ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 237 (419)
... .+..+++|+.|++++|.. ..++..+....+|+.|++++|.++.+.+..|..+++|+.|+|++|.+..++..
T Consensus 192 ~~~-----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 192 RDY-----SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CTT-----CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred Chh-----hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 543 677889999999999864 45665555666999999999999999878899999999999999999999998
Q ss_pred hccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchH
Q psy4257 238 SKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMR 316 (419)
Q Consensus 238 ~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~ 316 (419)
.|..+++|+.|+|++|++..++ ..|..+++|+.|+|++|+|+.++...+ ..+++|+.|++++|||.|+|.+.
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF-------HSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB-------SCGGGCCEEECCSSCEECSGGGH
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc-------CCCcccCEEEccCCCccCccchH
Confidence 9999999999999999999974 679999999999999999999987653 34789999999999999999999
Q ss_pred HHHHHHH
Q psy4257 317 AVIDAME 323 (419)
Q Consensus 317 ~~~~~l~ 323 (419)
|+.+|..
T Consensus 340 ~~~~~~~ 346 (477)
T 2id5_A 340 WVFRRRW 346 (477)
T ss_dssp HHHTTTT
T ss_pred hHHhhhh
Confidence 9987653
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-40 Score=324.20 Aligned_cols=329 Identities=24% Similarity=0.361 Sum_probs=268.7
Q ss_pred CCCcEEeccccccccc-ccccccccccceeecccccCc-cC-ccccccccccceeecccccccCc-hhhhcCCCCCCEEe
Q psy4257 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLE-AL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFN 78 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~-~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~ 78 (419)
++|++|+|++|.++.+ +..+..+++|++|+|++|.+. .+ +..|..+++|++|++++|.+..+ +..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5689999999999877 567888999999999999887 55 45688999999999999999886 67889999999999
Q ss_pred cCCCCCcccChh--hhcCCCCCCEEEccCCcCccc-ccc-ccCCccCcEEecccccccccChhhhcCC------------
Q psy4257 79 MDFNQITMVRRD--EFQNLHNLDSISLQNNQITSM-NSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGL------------ 142 (419)
Q Consensus 79 l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~i-~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l------------ 142 (419)
+++|++.+..+. .|.++++|++|++++|++..+ |.. +..+++|++|++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 999999874444 388899999999999999877 444 7889999999999999888766555443
Q ss_pred ----------------------CCccEEEcCCCCCccccCCC--------------------------------CCCCcc
Q psy4257 143 ----------------------KRLRTVDLSYNKINKFGTRN--------------------------------EGKNQV 168 (419)
Q Consensus 143 ----------------------~~L~~L~l~~n~l~~~~~~~--------------------------------~~~~~~ 168 (419)
++|+.|++++|++....+.. .....+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 56777777777664311000 000001
Q ss_pred c--CcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCC
Q psy4257 169 Q--GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL 245 (419)
Q Consensus 169 ~--~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 245 (419)
. ...+|+.|++++|.+..+ +..+..+++|++|++++|.+.++.+..|.++++|++|+|++|.+.++.+..|..+++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 1 125788899999988866 5667889999999999999999989999999999999999999999988899999999
Q ss_pred ceEeCcCCccccc-CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHH
Q psy4257 246 EELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAME 323 (419)
Q Consensus 246 ~~L~L~~N~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~ 323 (419)
++|+|++|++..+ +..|..+++|++|++++|+|+.++...+. .+++|+.+++++|+|.|+|. +.|+..|++
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD-------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc-------cCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence 9999999999997 57899999999999999999998876543 48899999999999999997 789999998
Q ss_pred hhcCCceeccccCCCCC
Q psy4257 324 TINNNTKIHGETICQPD 340 (419)
Q Consensus 324 ~~~~~~~~~~~~~c~~~ 340 (419)
. ......+...|..+
T Consensus 423 ~--~~~~~~~~~~c~~~ 437 (455)
T 3v47_A 423 K--NSQKEQGSAKCSGS 437 (455)
T ss_dssp H--TTTTEESCCBBTTT
T ss_pred h--CccceeeeeeecCC
Confidence 7 34445556677653
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-39 Score=329.05 Aligned_cols=326 Identities=21% Similarity=0.278 Sum_probs=286.8
Q ss_pred CCcEEeccccccccccc-ccccccccceeecccccCccCccccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~ 81 (419)
+|++|++++|.++.++. .+..+++|+.|++++|.++.+|..+..+++|++|++++|.+..+ +..+..+++|+.|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 68899999999998864 47889999999999999999999999999999999999999987 56889999999999999
Q ss_pred CCCc-ccChhhhcCCCCCCEEEccCCcCccc---cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 82 NQIT-MVRRDEFQNLHNLDSISLQNNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 82 n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~i---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
|.+. .++...|.++++|++|++++|.+..+ +..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 9988 45556799999999999999999976 4678999999999999999999888999999999999999999986
Q ss_pred ccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCc---CcccCCCCCCCcEEEccCCcCcc
Q psy4257 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~ 233 (419)
... ...+..+++|+.|++++|.+... +..+..+++|++|++++|.+.+. .+..+..+++|++|+|++|++.+
T Consensus 415 ~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 415 KDA----QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CTT----CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred ccc----chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 542 22477889999999999999876 46688899999999999999763 23568889999999999999999
Q ss_pred cCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257 234 LEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312 (419)
Q Consensus 234 ~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~ 312 (419)
+.+..|..+++|++|+|++|++++++ ..+..++.| .|++++|+++.+++..+. .+++++.+++++|||.|+
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP-------ILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH-------HHHTSSEEECTTCCEECS
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc-------cCCCCCEEeCCCCCcccc
Confidence 99889999999999999999999864 689999999 999999999998877543 378899999999999999
Q ss_pred cchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257 313 DSMRAVIDAMETINNNTKIHGETICQPDS 341 (419)
Q Consensus 313 ~~~~~~~~~l~~~~~~~~~~~~~~c~~~~ 341 (419)
|...|+..|++.............|..+.
T Consensus 563 c~~~~~~~w~~~~~~~~~~~~~~~C~~p~ 591 (606)
T 3t6q_A 563 CSNIYFLEWYKENMQKLEDTEDTLCENPP 591 (606)
T ss_dssp GGGHHHHHHHHHCGGGEECGGGCBEEESG
T ss_pred CCcHHHHHHHHhCcccccCCCCCeeCCch
Confidence 99999999999754444445566776543
No 4
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-39 Score=329.86 Aligned_cols=333 Identities=25% Similarity=0.297 Sum_probs=253.4
Q ss_pred CCcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257 4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD 80 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~ 80 (419)
++++|+|++|.|+.++ ..|..+++|++|+|++|+|+.++. .|.++++|++|+|++|+|+.++ ..|.++.+|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 6899999999999987 568889999999999999999865 6899999999999999999986 578999999999999
Q ss_pred CCCCcccChhhhcCCCCCCEEEccCCcCccc--cccccCCccCcEEecccccccccChhhhcCCCCc----cEEEcCCCC
Q psy4257 81 FNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL----RTVDLSYNK 154 (419)
Q Consensus 81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~ 154 (419)
+|+++++++..|+++++|++|+|++|.+..+ |..+..+++|++|++++|.+.+..+..|..+.++ ..++++.|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 9999999988899999999999999999864 6778889999999999998876654443222111 122222222
Q ss_pred Ccccc---------------------------------------------------------------------------
Q psy4257 155 INKFG--------------------------------------------------------------------------- 159 (419)
Q Consensus 155 l~~~~--------------------------------------------------------------------------- 159 (419)
+..++
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 11000
Q ss_pred ----------------------------------------------------CCCC--------------CCCcccCccc
Q psy4257 160 ----------------------------------------------------TRNE--------------GKNQVQGVTN 173 (419)
Q Consensus 160 ----------------------------------------------------~~~~--------------~~~~~~~~~~ 173 (419)
.... .......+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 0000 0000001223
Q ss_pred ccEEEcCCCC----------------------------------------------------------------------
Q psy4257 174 IFELKLQHNE---------------------------------------------------------------------- 183 (419)
Q Consensus 174 L~~L~l~~n~---------------------------------------------------------------------- 183 (419)
|+.+++++|.
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 3333333332
Q ss_pred ----CcCc-hhhhcCCCCCcEEEcCCCCC-CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257 184 ----IENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 184 ----l~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 257 (419)
+..+ +..+..++.|+.|++++|.+ ..+.+..|..+++|++|+|++|+++++++..|.++++|++|+|++|+|++
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~ 532 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 532 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB
T ss_pred cccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC
Confidence 2221 12334456677777777753 44567788899999999999999999999999999999999999999999
Q ss_pred cC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecC-CcceeEEecCCccccccchHHHHHHHHhhcCCceecccc
Q psy4257 258 LD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL-NSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGET 335 (419)
Q Consensus 258 l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~ 335 (419)
++ ..|..+++|+.|+|++|+|+++++..+. .+ .+|+.|++++|||.|||.+.||.+|++............
T Consensus 533 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~ 605 (635)
T 4g8a_A 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 605 (635)
T ss_dssp CCCGGGTTCTTCCEEECTTSCCCBCCSSCTT-------CCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGC
T ss_pred CChhHHhCCCCCCEEECCCCcCCCCCHHHHH-------hhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCc
Confidence 87 4689999999999999999999876543 24 579999999999999999999999999865555555667
Q ss_pred CCCCCCCC
Q psy4257 336 ICQPDSNE 343 (419)
Q Consensus 336 ~c~~~~~~ 343 (419)
.|..+..-
T Consensus 606 ~C~~P~~~ 613 (635)
T 4g8a_A 606 ECATPSDK 613 (635)
T ss_dssp BBCSSTTT
T ss_pred eeCCchHH
Confidence 88765543
No 5
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-39 Score=318.46 Aligned_cols=320 Identities=22% Similarity=0.277 Sum_probs=222.7
Q ss_pred CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCchhhhcCCCCCCEEecC
Q psy4257 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD 80 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~ 80 (419)
++|++|++++|.++.++ ..|..+++|++|+|++|+++.+ |..|..+++|++|++++|.|..+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 35777777777776654 4566677777777777777765 45677777777777777777776654 66777777777
Q ss_pred CCCCccc-ChhhhcCCCCCCEEEccCCcCccc--------------------------cccccCC---------------
Q psy4257 81 FNQITMV-RRDEFQNLHNLDSISLQNNQITSM--------------------------NSSLSGL--------------- 118 (419)
Q Consensus 81 ~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~i--------------------------~~~l~~l--------------- 118 (419)
+|++.++ .+..|+++++|++|++++|.+... |..+..+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 7777664 345667777777777766665421 1111110
Q ss_pred --------------------------------------------------------------------ccCcEEeccccc
Q psy4257 119 --------------------------------------------------------------------TKLAYLYLSHNQ 130 (419)
Q Consensus 119 --------------------------------------------------------------------~~L~~L~l~~n~ 130 (419)
++|++|++++|.
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 144455555555
Q ss_pred ccccChhhh-----------------------------------------------------cCCCCccEEEcCCCCCcc
Q psy4257 131 LTEFLLDDI-----------------------------------------------------RGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 131 l~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~n~l~~ 157 (419)
+.+..+..+ ..+++|++|++++|++.+
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccCh
Confidence 443222222 345566666666666654
Q ss_pred ccCCCCCCCcccCcccccEEEcCCCCCcCc---hhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcc
Q psy4257 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 233 (419)
..+ ..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+.+ +....|..+++|++|++++|++++
T Consensus 339 ~~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 339 TVF-----ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp TTT-----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred hhh-----hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 322 2456677888888888888754 3557778888888888888877 655557778888888888888876
Q ss_pred cCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257 234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313 (419)
Q Consensus 234 ~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 313 (419)
..+..+ .++|+.|++++|+|+.+|..+..+++|++|++++|+|+.++... +..+++|+.+++++|||.|+|
T Consensus 414 ~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-------~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 414 TIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI-------FDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp GGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTT-------TTTCTTCCEEECCSSCBCCCH
T ss_pred chhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHH-------hccCCcccEEECcCCCCcccC
Confidence 544333 26899999999999999988789999999999999999988763 234889999999999999999
Q ss_pred chHHH-HHHHHhhcCCceeccccCCCCC
Q psy4257 314 SMRAV-IDAMETINNNTKIHGETICQPD 340 (419)
Q Consensus 314 ~~~~~-~~~l~~~~~~~~~~~~~~c~~~ 340 (419)
.+.|+ ..|++... ........|..+
T Consensus 485 ~~~~~~~~~~~~~~--~~~~~~~~C~~p 510 (520)
T 2z7x_B 485 PRIDYLSRWLNKNS--QKEQGSAKCSGS 510 (520)
T ss_dssp HHHHHHHHHHHHTT--TTEESCCBBTTT
T ss_pred CchHHHHHHHHhcc--ccCCCCCCcCCc
Confidence 99999 99998843 335566778665
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-39 Score=325.91 Aligned_cols=217 Identities=22% Similarity=0.250 Sum_probs=157.8
Q ss_pred CCccCcEEecccccccccC--hhhhcCCCCccEEEcCCCCCccccCCC-------------------CCCCcccCccccc
Q psy4257 117 GLTKLAYLYLSHNQLTEFL--LDDIRGLKRLRTVDLSYNKINKFGTRN-------------------EGKNQVQGVTNIF 175 (419)
Q Consensus 117 ~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------~~~~~~~~~~~L~ 175 (419)
.+++|++|++++|.+.+.. +..+..+++|+.|++++|.+..++... .....+..+++|+
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 3456677777777766552 566777777888888777766544110 0012455666777
Q ss_pred EEEcCCCCCcC-chhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257 176 ELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253 (419)
Q Consensus 176 ~L~l~~n~l~~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 253 (419)
+|++++|.+.. .+..+..+++|++|++++|.+.+ +.+..|..+++|++|+|++|+++++.+..+..+++|++|+|++|
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 77777777665 34566777788888888887776 35777888888888888888888887777888888888888888
Q ss_pred ccccc-CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCC-cceeEEecCCccccccchHHHHHHHHhhcCCcee
Q psy4257 254 SLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN-STLRIYLEGNPVLCDDSMRAVIDAMETINNNTKI 331 (419)
Q Consensus 254 ~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~-~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~ 331 (419)
++.++ |..|..+++|+.|++++|+|+.++..+ ..++ +++.+++++|||.|+|.+.|+.+|++........
T Consensus 508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~--------~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~ 579 (606)
T 3vq2_A 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL--------QHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVN 579 (606)
T ss_dssp CCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG--------GGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSS
T ss_pred cCCCcCHHHccCCCcCCEEECCCCcCcccCHhH--------hhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccC
Confidence 88886 567888888889999988888887652 2355 5999999999999999999999999875444444
Q ss_pred ccccCCCCCC
Q psy4257 332 HGETICQPDS 341 (419)
Q Consensus 332 ~~~~~c~~~~ 341 (419)
.....|..+.
T Consensus 580 ~~~~~C~~p~ 589 (606)
T 3vq2_A 580 VEQMTCATPV 589 (606)
T ss_dssp GGGCCCC---
T ss_pred CccceeCCCh
Confidence 5566786543
No 7
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.1e-38 Score=315.32 Aligned_cols=306 Identities=21% Similarity=0.268 Sum_probs=227.7
Q ss_pred CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCchhhhcCCCCCCEEecC
Q psy4257 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD 80 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~ 80 (419)
++|++|++++|.|+.++ ..|..+++|++|+|++|.++.+ |..|..+++|++|++++|.|..+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 46888999999888776 5678888899999999988877 56688888899999998888888765 78888888888
Q ss_pred CCCCcccC-hhhhcCCCCCCEEEccCCcCccccccccCCc----------------------------------------
Q psy4257 81 FNQITMVR-RDEFQNLHNLDSISLQNNQITSMNSSLSGLT---------------------------------------- 119 (419)
Q Consensus 81 ~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~---------------------------------------- 119 (419)
+|++.++. +..|+++++|++|++++|++... .+..++
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 88888865 46788888888888888877532 122222
Q ss_pred ---------------------------------------------------------------------cCcEEeccccc
Q psy4257 120 ---------------------------------------------------------------------KLAYLYLSHNQ 130 (419)
Q Consensus 120 ---------------------------------------------------------------------~L~~L~l~~n~ 130 (419)
+|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 33444444444
Q ss_pred ccccChhhh-----------------------------------------------------cCCCCccEEEcCCCCCcc
Q psy4257 131 LTEFLLDDI-----------------------------------------------------RGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 131 l~~~~~~~~-----------------------------------------------------~~l~~L~~L~l~~n~l~~ 157 (419)
+.+..+..+ ..+++|++|++++|++.+
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 443222221 445566666666666655
Q ss_pred ccCCCCCCCcccCcccccEEEcCCCCCcCch---hhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcc
Q psy4257 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 158 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 233 (419)
..+ ..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.+ +....|..+++|++|++++|++++
T Consensus 368 ~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 368 SVF-----QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp TTT-----TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred chh-----hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 322 24566777888888888777543 456777788888888888877 655567777888888888888765
Q ss_pred cCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257 234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313 (419)
Q Consensus 234 ~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 313 (419)
..+..+. ++|+.|+|++|+|+.+|..+..+++|+.|+|++|+|+.++... +..+++++.+++++|||.|+|
T Consensus 443 ~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-------~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 443 SVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV-------FDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp GGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTS-------TTTCTTCCCEECCSCCBCCCH
T ss_pred chhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHH-------HhcCCCCCEEEecCCCcCCCc
Confidence 4332221 6899999999999999988779999999999999999988763 234789999999999999999
Q ss_pred chHHHHH-HHHhhc
Q psy4257 314 SMRAVID-AMETIN 326 (419)
Q Consensus 314 ~~~~~~~-~l~~~~ 326 (419)
.+.|+.. |++...
T Consensus 514 ~~~~~~~~~~~~~~ 527 (562)
T 3a79_B 514 PGIRYLSEWINKHS 527 (562)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHhcC
Confidence 9999976 877643
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-37 Score=298.48 Aligned_cols=305 Identities=24% Similarity=0.336 Sum_probs=239.6
Q ss_pred CCCCcEEecccccccccccc-cccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN 78 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~ 78 (419)
+++|++|+++++.++.++.. +..+++|+.|+|++|.++.++. .|..+++|++|++++|.+..++ ..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46788999999999888754 4668899999999999987754 6888899999999999998874 5678889999999
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
+++|++..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+.. +..+++|+.|++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 9999999888877888999999999999988774 46888899999999999888763 3445566666666665554
Q ss_pred ccCCCCCC-----------CcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEc
Q psy4257 158 FGTRNEGK-----------NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226 (419)
Q Consensus 158 ~~~~~~~~-----------~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 226 (419)
+....... .......+|+.|++++|.+..++ .+..+++|++|++++|.+.++.+..|..+++|++|+|
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 32110000 00112357888888888888763 5777888999999999988888888888899999999
Q ss_pred cCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecC
Q psy4257 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEG 306 (419)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 306 (419)
++|++.+++.. +..+++|++|+|++|++..++..+..+++|+.|++++|.|+.++. ..+++|+.|++++
T Consensus 280 ~~n~l~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~----------~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 280 SNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL----------STHHTLKNLTLSH 348 (390)
T ss_dssp CSSCCCEEECS-SSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC----------CTTCCCSEEECCS
T ss_pred CCCcCcccCcc-cCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCc----------hhhccCCEEEcCC
Confidence 99988887543 456888999999999998888777888889999999999887752 2478899999999
Q ss_pred CccccccchHHHHHH
Q psy4257 307 NPVLCDDSMRAVIDA 321 (419)
Q Consensus 307 Np~~c~~~~~~~~~~ 321 (419)
|+|.|+|...|+..|
T Consensus 349 N~~~~~~~~~~~~~~ 363 (390)
T 3o6n_A 349 NDWDCNSLRALFRNV 363 (390)
T ss_dssp SCEEHHHHHHHTTTC
T ss_pred CCccchhHHHHHHHH
Confidence 999999866555443
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-37 Score=318.83 Aligned_cols=332 Identities=23% Similarity=0.303 Sum_probs=215.6
Q ss_pred CCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeeccccccc------Cch----hhhcCC
Q psy4257 4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRIT------SLD----GLLRGL 71 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~------~l~----~~~~~l 71 (419)
+|++|++++|.++.++ ..+..+++|+.|++++|.+..+ +..|..+.+|+.|++++|... .+| ..|..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 4788888888877654 4566778888888888877754 334555555666655544322 111 134445
Q ss_pred CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC----------------------------cCccc-cccccCCccCc
Q psy4257 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN----------------------------QITSM-NSSLSGLTKLA 122 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n----------------------------~l~~i-~~~l~~l~~L~ 122 (419)
++|+.|++++|.+.++.+..|.++++|++|++++| ++..+ +..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 55555555555555554444444444444444333 23322 23455566666
Q ss_pred EEeccccccccc-ChhhhcCCCCccEEEcCCCCCccccCC---------------------CCCCCcccCcccccEEEcC
Q psy4257 123 YLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTR---------------------NEGKNQVQGVTNIFELKLQ 180 (419)
Q Consensus 123 ~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~~~~~~~~~L~~L~l~ 180 (419)
.|++++|.+.+. ....|.++++|++|++++|++..+... ...+..+..+++|+.|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 666666666543 224555666666666666655443221 1123356778888888998
Q ss_pred CCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCc--------ccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCc
Q psy4257 181 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISP--------DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS 251 (419)
Q Consensus 181 ~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 251 (419)
+|.++.++ ..+.++++|++|++++|.++++.. ..|.++++|++|+|++|++..++...|..+++|+.|+|+
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 88888776 457788889999999988876532 236778899999999999998888888889999999999
Q ss_pred CCcccccCcc-CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccch-HHHHHHHHhhcCCc
Q psy4257 252 HNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSM-RAVIDAMETINNNT 329 (419)
Q Consensus 252 ~N~i~~l~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~-~~~~~~l~~~~~~~ 329 (419)
+|+++.++.. |..+++|+.|+|++|+|++++...+.. .+++++.+++++|||.|+|.. .||..|++.....+
T Consensus 569 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~ 642 (680)
T 1ziw_A 569 LNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP------AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHH------HHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----
T ss_pred CCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcc------cccccCEEEccCCCcccCCccHHHHHHHHHhcCccc
Confidence 9999998854 678899999999999999988875431 267899999999999999996 99999976532222
Q ss_pred ee-ccccCCCCCC
Q psy4257 330 KI-HGETICQPDS 341 (419)
Q Consensus 330 ~~-~~~~~c~~~~ 341 (419)
.. .....|..+.
T Consensus 643 ~~~~~~~~C~~p~ 655 (680)
T 1ziw_A 643 PELSSHYLCNTPP 655 (680)
T ss_dssp -------------
T ss_pred ccccCCcEECCch
Confidence 22 2345776554
No 10
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-37 Score=307.85 Aligned_cols=327 Identities=22% Similarity=0.363 Sum_probs=207.6
Q ss_pred CCCcEEecccccccccc-cccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEec
Q psy4257 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNM 79 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l 79 (419)
++|++|++++|.++.++ ..+..+++|++|+|++|.++.++ ..|..+++|++|++++|.+.+++ ..|.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46788888888877663 56777888888888888887664 46777888888888888888765 44777888888888
Q ss_pred CCCCCcccC-hhhhcCCCCCCEEEccCCc-Ccccc-ccccCCccCcEEecccccccccChhhhc----------------
Q psy4257 80 DFNQITMVR-RDEFQNLHNLDSISLQNNQ-ITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIR---------------- 140 (419)
Q Consensus 80 ~~n~l~~~~-~~~~~~~~~L~~L~L~~n~-l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~---------------- 140 (419)
++|.+.++. +..|.++++|++|++++|. +..++ ..+..+++|++|++++|.+.+..+..+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 888877643 3467777777777777776 55554 3566666666666666666654443332
Q ss_pred --------CCCCccEEEcCCCCCccccCCC--------------------------------------------------
Q psy4257 141 --------GLKRLRTVDLSYNKINKFGTRN-------------------------------------------------- 162 (419)
Q Consensus 141 --------~l~~L~~L~l~~n~l~~~~~~~-------------------------------------------------- 162 (419)
.+++|++|++++|++.+.....
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 2445555555555544321000
Q ss_pred -----------------------------------------------------------CC-------------------
Q psy4257 163 -----------------------------------------------------------EG------------------- 164 (419)
Q Consensus 163 -----------------------------------------------------------~~------------------- 164 (419)
..
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 00
Q ss_pred --------CCcccCcccccEEEcCCCCCcCch---hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcc
Q psy4257 165 --------KNQVQGVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 165 --------~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 233 (419)
...+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+..
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~ 424 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRV 424 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSC
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCccc
Confidence 001223344444444444444443 2345556666666666666654 4445555566666666665554
Q ss_pred cCchhc-----------------cCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecC
Q psy4257 234 LEETSK-----------------TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL 296 (419)
Q Consensus 234 ~~~~~~-----------------~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~ 296 (419)
++.... ..+++|++|+|++|+|+.+|. ...+++|+.|+|++|+++++++..+ ..+
T Consensus 425 l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~-------~~l 496 (549)
T 2z81_A 425 VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIF-------DRL 496 (549)
T ss_dssp CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGG-------GGC
T ss_pred ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHH-------hcC
Confidence 432211 245667777777777776664 3456777777777777777666533 347
Q ss_pred CcceeEEecCCccccccc-hHHHHHHHHhhcCCceeccccCCCCC
Q psy4257 297 NSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTKIHGETICQPD 340 (419)
Q Consensus 297 ~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~~~~~~~c~~~ 340 (419)
++++.+++++|||.|+|. +.|+..|++.. .....+...|..+
T Consensus 497 ~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~--~~~~~~~~~C~~~ 539 (549)
T 2z81_A 497 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKN--SQKEQGSAKCSGS 539 (549)
T ss_dssp TTCCEEECCSSCBCCCHHHHHHHHHHHHHC--TTTEESCCBBTTT
T ss_pred cccCEEEecCCCccCCCccHHHHHHHHHhc--ccccCCCCeECCC
Confidence 899999999999999998 57888899873 3445667778654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-37 Score=307.51 Aligned_cols=164 Identities=24% Similarity=0.339 Sum_probs=131.1
Q ss_pred ccCcccccEEEcCCCCCcCch--hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc-ccCchhccCCCC
Q psy4257 168 VQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFLPA 244 (419)
Q Consensus 168 ~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 244 (419)
+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+.++.+..|.++++|++|++++|.+. +..+..+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 556677788888888777653 35677888888888888888877888888889999999999887 334456788899
Q ss_pred CceEeCcCCccccc-CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHH-HHH
Q psy4257 245 LEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVI-DAM 322 (419)
Q Consensus 245 L~~L~L~~N~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~-~~l 322 (419)
|+.|++++|+++++ +..|..+++|+.|++++|++++++...+ ..+++|+.+++++|+|.|+|...|+. .|+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl 544 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF-------DRLTSLQKIWLHTNPWDCSCPRIDYLSRWL 544 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT-------TTCTTCCEEECCSSCBCCCTTTTHHHHHHH
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh-------hcccCCcEEEecCCcccCCCcchHHHHHHH
Confidence 99999999999887 5678889999999999999998876543 34789999999999999999988888 999
Q ss_pred HhhcCCceeccccCCCCC
Q psy4257 323 ETINNNTKIHGETICQPD 340 (419)
Q Consensus 323 ~~~~~~~~~~~~~~c~~~ 340 (419)
+.. ...+.+...|..+
T Consensus 545 ~~~--~~~~~~~~~C~~~ 560 (570)
T 2z63_A 545 NKN--SQKEQGSAKCSGS 560 (570)
T ss_dssp HHT--GGGEESCCBBTTT
T ss_pred Hhc--cccCCCchhhCCC
Confidence 883 3444455588654
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-36 Score=305.03 Aligned_cols=304 Identities=24% Similarity=0.338 Sum_probs=233.4
Q ss_pred CCCCcEEecccccccccccc-cccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN 78 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~ 78 (419)
+.+++.|++++|.+..++.. +..+++|+.|+|++|.++.++. .|..+++|+.|+|++|.|..++ ..|.++++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45778888888888887754 4558888888888888887754 6888888888888888888875 4578888888888
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
+++|.+.++++..|.++++|++|+|++|.+..++ ..+..+++|+.|++++|.+.+.. +..+++|+.|++++|.+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 8888888888877888888888888888888764 46788888888888888887763 3345556666666665544
Q ss_pred ccCCCCCC-----------CcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEc
Q psy4257 158 FGTRNEGK-----------NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226 (419)
Q Consensus 158 ~~~~~~~~-----------~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 226 (419)
+....... .......+|+.|+|++|.+..+ ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|
T Consensus 207 l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 32110000 0001135688888888888775 45778888999999999998888888888899999999
Q ss_pred cCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecC
Q psy4257 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEG 306 (419)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 306 (419)
++|.+.+++. .+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.|..++. ..++.|+.|++++
T Consensus 286 s~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~L~~L~l~~ 354 (597)
T 3oja_B 286 SNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL----------STHHTLKNLTLSH 354 (597)
T ss_dssp TTSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC----------CTTCCCSEEECCS
T ss_pred CCCCCCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh----------hhcCCCCEEEeeC
Confidence 9999888754 3456889999999999998888878888899999999999887753 2478899999999
Q ss_pred CccccccchHHHHH
Q psy4257 307 NPVLCDDSMRAVID 320 (419)
Q Consensus 307 Np~~c~~~~~~~~~ 320 (419)
|||.|+|...|+..
T Consensus 355 N~~~~~~~~~~~~~ 368 (597)
T 3oja_B 355 NDWDCNSLRALFRN 368 (597)
T ss_dssp SCEEHHHHHHHTTT
T ss_pred CCCCChhHHHHHHH
Confidence 99999986555443
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=316.29 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred ccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcc-------c-----ceecCCcceeEEec
Q psy4257 239 KTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQ-------C-----QIFGLNSTLRIYLE 305 (419)
Q Consensus 239 ~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-------~-----~~~~~~~l~~l~l~ 305 (419)
|..+++|+.|+|++|+|++++ ..|..+++|+.|+|++|+|+.++...+...- . ....+.++..++++
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~ 555 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDIT 555 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEE
T ss_pred hcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEec
Confidence 555677888888888888776 3477788888888888888777655432100 0 01124578899999
Q ss_pred CCccccccchHHHHHHHHhhcCCc-eeccccCCCCC
Q psy4257 306 GNPVLCDDSMRAVIDAMETINNNT-KIHGETICQPD 340 (419)
Q Consensus 306 ~Np~~c~~~~~~~~~~l~~~~~~~-~~~~~~~c~~~ 340 (419)
+|||.|+|.+.||..|+....... .......|..+
T Consensus 556 ~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 556 HNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp EECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred CCCcccccccHHHHHHHHhcCcccccccccCccCCc
Confidence 999999999999999997632222 11233466543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.5e-36 Score=304.13 Aligned_cols=281 Identities=21% Similarity=0.271 Sum_probs=177.4
Q ss_pred ccccccccccccceeecccccCcc------------------Cccccc--cccccceeecccccccC-chhhhcCCCCCC
Q psy4257 17 SLEGQLGTLSKLQLLVIEQNQLEA------------------LPSDIQ--LFSQLGSLYANNNRITS-LDGLLRGLTKLQ 75 (419)
Q Consensus 17 ~l~~~~~~~~~L~~L~L~~n~l~~------------------i~~~~~--~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~ 75 (419)
.+|..+..+++|+.|+|++|.++. +|..++ ++++|++|++++|.+.+ +|..|.++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 355556667777777777777776 777666 77777777777776554 566677777777
Q ss_pred EEecCCCC-Ccc-cChhhhcCC------CCCCEEEccCCcCccccc--cccCCccCcEEecccccccccChhhhcCCCCc
Q psy4257 76 VFNMDFNQ-ITM-VRRDEFQNL------HNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 145 (419)
Q Consensus 76 ~L~l~~n~-l~~-~~~~~~~~~------~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 145 (419)
.|++++|+ +++ ..|..+..+ ++|++|++++|+++.+|. .+..+++|++|++++|.+.+..+ .|..+++|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 77777776 666 445555554 677777777777777766 67777777777777777775455 66666777
Q ss_pred cEEEcCCCCCccccCCCCCCCcccCccc-ccEEEcCCCCCcCchhhhcCCC--CCcEEEcCCCCCCCcCcccCC------
Q psy4257 146 RTVDLSYNKINKFGTRNEGKNQVQGVTN-IFELKLQHNEIENLDGALMGIH--GLSRLDLSHNKLRTISPDDFI------ 216 (419)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~------ 216 (419)
+.|++++|++..++. .+..+++ |++|++++|.+..+|..+.... +|++|++++|.+.+..|..|.
T Consensus 356 ~~L~L~~N~l~~lp~------~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 356 ASLNLAYNQITEIPA------NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp SEEECCSSEEEECCT------TSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CEEECCCCccccccH------hhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 777777777664432 3555666 7777777777666665554433 566666666666665555555
Q ss_pred -CCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCC-CC-------CCcCEEecCCCcccccchhhhh
Q psy4257 217 -GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFH-GL-------PVLCKADLAHNNIKAINIQLAL 287 (419)
Q Consensus 217 -~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~-~l-------~~L~~L~L~~N~l~~~~~~~~~ 287 (419)
.+.+|++|+|++|.+..++...+..+++|++|+|++|+++.+|..+. .. ++|+.|+|++|+|+.++..+..
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 55566666666666666665555556666666666666666553322 11 2566666666666655543220
Q ss_pred hcccceecCCcceeEEecCCccc
Q psy4257 288 KTQCQIFGLNSTLRIYLEGNPVL 310 (419)
Q Consensus 288 ~~~~~~~~~~~l~~l~l~~Np~~ 310 (419)
..+++|+.|++++|.+.
T Consensus 510 ------~~l~~L~~L~Ls~N~l~ 526 (636)
T 4eco_A 510 ------TTLPYLVGIDLSYNSFS 526 (636)
T ss_dssp ------TTCTTCCEEECCSSCCS
T ss_pred ------ccCCCcCEEECCCCCCC
Confidence 02455555555555543
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=100.00 E-value=8.1e-35 Score=283.23 Aligned_cols=259 Identities=24% Similarity=0.383 Sum_probs=167.1
Q ss_pred cceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257 28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106 (419)
Q Consensus 28 L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 106 (419)
...++.++..++.+|..+. .+++.|+|++|.|..++ ..|.++++|+.|+|++|+|..+.+..|.++++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 3445555555555554432 34555555555555443 34455555555555555555555555555555555555555
Q ss_pred cCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257 107 QITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185 (419)
Q Consensus 107 ~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 185 (419)
+|+.++. .|..+++|++|+|++|.+..+....|..+++|+.|++++| +.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~----------------------------~~l~ 174 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL----------------------------KRLS 174 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC----------------------------TTCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC----------------------------CCcc
Confidence 5554432 3444555555555555554444444444445555554442 2333
Q ss_pred Cch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCC
Q psy4257 186 NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFH 263 (419)
Q Consensus 186 ~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~ 263 (419)
.++ ..+.++++|++|++++|.++.+. .+..+++|++|+|++|.+.++.+..|..+++|+.|+|++|+|..++ ..|.
T Consensus 175 ~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 252 (440)
T 3zyj_A 175 YISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD 252 (440)
T ss_dssp EECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST
T ss_pred eeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc
Confidence 333 34666777778888887777663 4677788888888888888887777888888888888888888875 4677
Q ss_pred CCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257 264 GLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI 325 (419)
Q Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~ 325 (419)
.+++|+.|+|++|+|+.++...+. .+++|+.|++++|||.|||.+.|+..|++..
T Consensus 253 ~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~ 307 (440)
T 3zyj_A 253 NLQSLVEINLAHNNLTLLPHDLFT-------PLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307 (440)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTS-------SCTTCCEEECCSSCEECSSTTHHHHHHHHTT
T ss_pred CCCCCCEEECCCCCCCccChhHhc-------cccCCCEEEcCCCCccCCCCchHHHHHHHhc
Confidence 888888888888888888776443 4788999999999999999999999999874
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-35 Score=288.82 Aligned_cols=302 Identities=24% Similarity=0.269 Sum_probs=263.0
Q ss_pred CCCCCcEEeccccccccc-ccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEE
Q psy4257 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF 77 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L 77 (419)
++++|++|+|++|.++.+ +..|..+++|+.|+|++|.++.+|. .|..+++|++|++++|.+..+ +..|..+++|+.|
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 478999999999999977 5678889999999999999999976 479999999999999999986 5689999999999
Q ss_pred ecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 78 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
++++|.+.++.+..|.++++|+.|++++|+++.++ ..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 99999999999999999999999999999999886 46889999999999999999988889999999999999998764
Q ss_pred cccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccC
Q psy4257 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235 (419)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 235 (419)
..... ......+|+.|++++|.++.++ ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|++|++.++.
T Consensus 214 ~~~~~-----~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (477)
T 2id5_A 214 DTMTP-----NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288 (477)
T ss_dssp CEECT-----TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred cccCc-----ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence 43221 1223448999999999999998 56789999999999999999999999999999999999999999999
Q ss_pred chhccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257 236 ETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 236 ~~~~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
+..|..+++|+.|+|++|+|+.++. .|..+++|+.|+|++|.+..--...+. ......+.+.++.+.|.+.
T Consensus 289 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~--------~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV--------FRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH--------HTTTTSSCCTTCCCBEEES
T ss_pred HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH--------HhhhhccccCccCceeCCc
Confidence 9999999999999999999999984 578999999999999999743322221 1222345677888889775
Q ss_pred h
Q psy4257 315 M 315 (419)
Q Consensus 315 ~ 315 (419)
.
T Consensus 361 ~ 361 (477)
T 2id5_A 361 E 361 (477)
T ss_dssp G
T ss_pred h
Confidence 3
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.6e-34 Score=270.02 Aligned_cols=286 Identities=23% Similarity=0.396 Sum_probs=237.2
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+++|++|+++++.+..+++ +..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence 5689999999999988865 7889999999999999998876 889999999999999999987 488999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 161 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (419)
|.+.++.+ +..+++|++|++++|........+..+++|++|++++|.+.+... +..+++|+.|++++|.+..++.
T Consensus 120 n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 194 (347)
T 4fmz_A 120 DNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP- 194 (347)
T ss_dssp SCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-
T ss_pred CcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-
Confidence 99998855 889999999999999544433558889999999999999887643 7888999999999998876542
Q ss_pred CCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccC
Q psy4257 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241 (419)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 241 (419)
+..+++|+.|++++|.+..++. +..+++|++|++++|.++++.+ +..+++|++|++++|.+.+++ .+..
T Consensus 195 ------~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~ 263 (347)
T 4fmz_A 195 ------LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKD 263 (347)
T ss_dssp ------GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTT
T ss_pred ------ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhc
Confidence 5677888888888888887765 7778888888888888887744 778888888888888888763 4677
Q ss_pred CCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc
Q psy4257 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 242 l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
+++|++|++++|++..++ .+..+++|+.|++++|.++..+...+. .+++|+.+++++|++.....
T Consensus 264 l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG-------GLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH-------TCTTCSEEECCSSSCCCCGG
T ss_pred CCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh-------ccccCCEEEccCCccccccC
Confidence 888888888888888874 577888888888888888877765443 37788888888888766443
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-35 Score=304.79 Aligned_cols=297 Identities=24% Similarity=0.274 Sum_probs=159.2
Q ss_pred CCCCcEEeccccccc-cccccccccc-ccceeecccccCc-cCcccccc--ccccceeecccccccC-chhhhcCCCCCC
Q psy4257 2 LTDLNWLFLNNNRLK-SLEGQLGTLS-KLQLLVIEQNQLE-ALPSDIQL--FSQLGSLYANNNRITS-LDGLLRGLTKLQ 75 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-~l~~~~~~~~-~L~~L~L~~n~l~-~i~~~~~~--~~~L~~L~l~~n~i~~-l~~~~~~l~~L~ 75 (419)
+++|++|++++|.++ .++..+..++ +|+.|++++|.++ .++..+.. +++|++|++++|.+.+ +|..+..+++|+
T Consensus 342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 421 (768)
T 3rgz_A 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421 (768)
T ss_dssp CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence 566777777777776 5555555554 6666666666655 33333333 4555555555555553 445555555555
Q ss_pred EEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCC
Q psy4257 76 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154 (419)
Q Consensus 76 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 154 (419)
.|++++|++.+..+..|.++++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~ 501 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence 5555555555555555555555555555555555 345555555555555555555555555555555555555555555
Q ss_pred CccccCCCCCCCcccCcccccEEEcCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcc--------------------
Q psy4257 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPD-------------------- 213 (419)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------------- 213 (419)
+.+..+ ..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|.
T Consensus 502 l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~ 576 (768)
T 3rgz_A 502 LTGEIP-----KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYV 576 (768)
T ss_dssp CCSCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEE
T ss_pred cCCcCC-----hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccc
Confidence 543321 13444555555555555554 3444555555555555555544322221
Q ss_pred --------------------------------------------------cCCCCCCCcEEEccCCcCcccCchhccCCC
Q psy4257 214 --------------------------------------------------DFIGLDSLKMLDISHNLLTTLEETSKTFLP 243 (419)
Q Consensus 214 --------------------------------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 243 (419)
.|..+++|+.|||++|++++..+..++.++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 656 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT
T ss_pred ccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc
Confidence 122234555555555555555555555555
Q ss_pred CCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccc
Q psy4257 244 ALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL 310 (419)
Q Consensus 244 ~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~ 310 (419)
+|+.|+|++|++++ +|..|..+++|+.|||++|++++..+..+ ..+..|+.+++++|++.
T Consensus 657 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l-------~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-------SALTMLTEIDLSNNNLS 717 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG-------GGCCCCSEEECCSSEEE
T ss_pred cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH-------hCCCCCCEEECcCCccc
Confidence 55555555555553 45555555555555555555553333221 22455555555555543
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.1e-34 Score=268.98 Aligned_cols=280 Identities=26% Similarity=0.396 Sum_probs=249.0
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|+.|++++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence 6799999999999998876 888999999999999999985 68999999999999999999987 88999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 161 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (419)
|......+ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.+... +..+++|+.|++++|.+.....
T Consensus 142 n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 142 NHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp CTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence 96555433 48999999999999999998855 8899999999999999988643 8889999999999999987642
Q ss_pred CCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccC
Q psy4257 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241 (419)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 241 (419)
+..+++|++|++++|.+..++. +..+++|++|++++|.++++ ..+..+++|++|++++|.+.+++ .+..
T Consensus 217 ------~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~~~~ 285 (347)
T 4fmz_A 217 ------VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS--VLNN 285 (347)
T ss_dssp ------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGG
T ss_pred ------hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh--hhcC
Confidence 6788999999999999999887 88899999999999999987 46889999999999999999984 5778
Q ss_pred CCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257 242 LPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309 (419)
Q Consensus 242 l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~ 309 (419)
+++|+.|++++|++..++ ..+..+++|+.|++++|+++++++ +..+++|+.+++++|++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---------LASLSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---------GGGCTTCSEESSSCC--
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---------hhhhhccceeehhhhcc
Confidence 999999999999999865 568899999999999999998876 12388999999999986
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-34 Score=291.67 Aligned_cols=300 Identities=20% Similarity=0.225 Sum_probs=222.1
Q ss_pred CCCcEEeccccccccc-ccccccccccceeecccccCccC-ccccccccccceeecccccccCc-hhhhcCCCCCCEEec
Q psy4257 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM 79 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l 79 (419)
+.+++|++++|.|+.+ +..|..+++|++|+|++|.+..+ |..|.++++|++|++++|.+..+ +..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 3689999999999987 46788899999999999999876 66799999999999999999886 678999999999999
Q ss_pred CCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCcc--EEEcCCCCCc
Q psy4257 80 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR--TVDLSYNKIN 156 (419)
Q Consensus 80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~l~ 156 (419)
++|++.++.+..|.++++|++|++++|++..++ ..+..+++|++|++++|.+.+..+..|..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 999999988888999999999999999999763 3445589999999999999998888899999998 8899999887
Q ss_pred cccCCCCC----------------------------------------------------------------------CC
Q psy4257 157 KFGTRNEG----------------------------------------------------------------------KN 166 (419)
Q Consensus 157 ~~~~~~~~----------------------------------------------------------------------~~ 166 (419)
.+.+..+. ..
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 65533211 11
Q ss_pred cccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc-ccCchhccCCCCC
Q psy4257 167 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFLPAL 245 (419)
Q Consensus 167 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 245 (419)
.+..+++|++|++++|.++.+|..+..+++|++|++++|.+.++.+..+..+++|++|++++|.+. .++...+..+++|
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 244556677777777777766666666677777777777776665666666666666666666655 3444445666666
Q ss_pred ceEeCcCCccccc---CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257 246 EELFVSHNSLTRL---DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309 (419)
Q Consensus 246 ~~L~L~~N~i~~l---~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~ 309 (419)
++|++++|.+..+ +..+..+++|+.|++++|.+..+.+..+. .+++|+.+++++|.+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-------ECPQLELLDLAFTRL 412 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-------TCTTCSEEECTTCCE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-------CCccCCeEECCCCcC
Confidence 6666666666654 34466666666666666666655443321 234444455544443
No 21
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.3e-35 Score=302.37 Aligned_cols=226 Identities=25% Similarity=0.267 Sum_probs=108.4
Q ss_pred CCCCcEEeccccccc-ccccc-cccccccceeecccccCc-cCcccccccc-ccceeecccccccC-chhhhcC--CCCC
Q psy4257 2 LTDLNWLFLNNNRLK-SLEGQ-LGTLSKLQLLVIEQNQLE-ALPSDIQLFS-QLGSLYANNNRITS-LDGLLRG--LTKL 74 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-~l~~~-~~~~~~L~~L~L~~n~l~-~i~~~~~~~~-~L~~L~l~~n~i~~-l~~~~~~--l~~L 74 (419)
+++|++|++++|.+. .++.. +..+++|+.|++++|.++ .+|..+..+. +|+.|++++|.+.+ ++..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 344555555555544 34322 444555555555555544 4444444444 45555555554443 2222222 4445
Q ss_pred CEEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCC
Q psy4257 75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153 (419)
Q Consensus 75 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 153 (419)
+.|++++|++.+..+..|.++++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 55555555555444444555555555555555544 33444455555555555555555444444555555555555555
Q ss_pred CCccccCCCCCCCcccCcccccEEEcCCCCCc-CchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc
Q psy4257 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232 (419)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 232 (419)
++.+..+ ..+..+++|++|++++|++. .+|.++..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 477 ~l~~~~p-----~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 477 DLTGEIP-----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCCSCCC-----GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cccCcCC-----HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 4443221 13444455555555555544 33444444555555555555554444444555555555555555443
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-35 Score=296.97 Aligned_cols=292 Identities=21% Similarity=0.296 Sum_probs=214.3
Q ss_pred CCCCCcEEecccccccc------------------cccccc--cccccceeecccccCc-cCccccccccccceeecccc
Q psy4257 1 GLTDLNWLFLNNNRLKS------------------LEGQLG--TLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 59 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~~------------------l~~~~~--~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n 59 (419)
++++|++|+|++|.++. +|..+. .+++|++|+|++|.+. .+|..|..+++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 36889999999999998 888888 8999999999999877 67888999999999999999
Q ss_pred c-ccC--chhhhcCC------CCCCEEecCCCCCcccCh-hhhcCCCCCCEEEccCCcCc-cccccccCCccCcEEeccc
Q psy4257 60 R-ITS--LDGLLRGL------TKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSH 128 (419)
Q Consensus 60 ~-i~~--l~~~~~~l------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L~l~~ 128 (419)
. +++ +|..+..+ ++|+.|++++|++..++. ..|.++++|++|++++|++. .+| .+..+++|++|++++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 8 885 78777665 899999999999996654 37999999999999999999 888 888889999999999
Q ss_pred ccccccChhhhcCCCC-ccEEEcCCCCCccccCCCCCCCcccC--cccccEEEcCCCCCcCc-hhhhc-------CCCCC
Q psy4257 129 NQLTEFLLDDIRGLKR-LRTVDLSYNKINKFGTRNEGKNQVQG--VTNIFELKLQHNEIENL-DGALM-------GIHGL 197 (419)
Q Consensus 129 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~-~~~~~-------~l~~L 197 (419)
|.+.. .+..+..+++ |+.|++++|++..++.. +.. +.+|+.|++++|.+... |..+. .+.+|
T Consensus 363 N~l~~-lp~~l~~l~~~L~~L~Ls~N~l~~lp~~------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 363 NQITE-IPANFCGFTEQVENLSFAHNKLKYIPNI------FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp SEEEE-CCTTSEEECTTCCEEECCSSCCSSCCSC------CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred Ccccc-ccHhhhhhcccCcEEEccCCcCcccchh------hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 99884 5566888888 99999999988865432 222 23666677777666542 33343 45566
Q ss_pred cEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC-------CCceEeCcCCcccccCccCC--CCCCc
Q psy4257 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP-------ALEELFVSHNSLTRLDKDFH--GLPVL 268 (419)
Q Consensus 198 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~l~~~~~--~l~~L 268 (419)
++|++++|.++.+....+..+++|++|+|++|+++.++...+.... +|+.|+|++|+|+.+|..+. .+++|
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L 515 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTC
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCc
Confidence 6666666666666555555566666666666666666555444332 66666666666666665554 66666
Q ss_pred CEEecCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257 269 CKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 269 ~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
+.|+|++|+|++++..+. .+++|+.|++++|+
T Consensus 516 ~~L~Ls~N~l~~ip~~~~--------~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 516 VGIDLSYNSFSKFPTQPL--------NSSTLKGFGIRNQR 547 (636)
T ss_dssp CEEECCSSCCSSCCCGGG--------GCSSCCEEECCSCB
T ss_pred CEEECCCCCCCCcChhhh--------cCCCCCEEECCCCc
Confidence 666666666666554322 25555666664443
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=100.00 E-value=7.4e-34 Score=277.43 Aligned_cols=259 Identities=24% Similarity=0.377 Sum_probs=195.2
Q ss_pred cceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccc
Q psy4257 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN 129 (419)
Q Consensus 51 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n 129 (419)
...+++++..+..+|..+. ++|+.|+|++|+|.++.+..|.++++|++|+|++|.|..++ ..|..+++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4556666666666664332 46666777777766666666666677777777777666653 45666667777777777
Q ss_pred cccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCC-CCCcCch-hhhcCCCCCcEEEcCCCCC
Q psy4257 130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-NEIENLD-GALMGIHGLSRLDLSHNKL 207 (419)
Q Consensus 130 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~-~~~~~l~~L~~L~Ls~n~l 207 (419)
.+.++.+..|..+++|++|++++|++..++.. .+..+++|+.|++++ +.+..++ ..+..+++|++|+|++|.+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSY-----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTT-----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHh-----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 76666666666667777777777766655432 455666777777776 4555554 3577788899999999988
Q ss_pred CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhh
Q psy4257 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLA 286 (419)
Q Consensus 208 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (419)
+++. .+..+++|++|+|++|.+.++.+..|..+++|+.|+|++|++..++ ..|..+++|+.|+|++|+|+.++...+
T Consensus 209 ~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 209 KDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp SSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 8773 4778889999999999999988888889999999999999998875 568889999999999999998887654
Q ss_pred hhcccceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257 287 LKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI 325 (419)
Q Consensus 287 ~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~ 325 (419)
. .+++|+.|++++|||.|||.+.|+..|++..
T Consensus 287 ~-------~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~ 318 (452)
T 3zyi_A 287 T-------PLRYLVELHLHHNPWNCDCDILWLAWWLREY 318 (452)
T ss_dssp T-------TCTTCCEEECCSSCEECSTTTHHHHHHHHHH
T ss_pred c-------cccCCCEEEccCCCcCCCCCchHHHHHHHHh
Confidence 3 4788999999999999999999999999875
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=278.04 Aligned_cols=300 Identities=19% Similarity=0.263 Sum_probs=180.9
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 103 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 103 (419)
|+.....+++++.++.+|..+. ++|++|++++|.+..++. .|.++++|+.|++++|++.++.+..|.++++|++|++
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 4444445555555555554432 355555555555555542 4555555555555555555555555555555555555
Q ss_pred cCCcCcccccc-ccCCccCcEEecccccccccCh-hhhcCCCCccEEEcCCC-CCccccCCCCCCCcccCcccccEEEcC
Q psy4257 104 QNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYN-KINKFGTRNEGKNQVQGVTNIFELKLQ 180 (419)
Q Consensus 104 ~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~~L~l~ 180 (419)
++|+++.++.. +..+++|++|++++|.+.++.. ..|..+++|++|++++| .+..++.. .+..+++|++|+++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK-----DFAGLTFLEELEID 182 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT-----TTTTCCEEEEEEEE
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH-----HccCCCCCCEEECC
Confidence 55555555433 4555555555555555555433 34555555555555555 24433221 34455555566666
Q ss_pred CCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc---cCCCCCceEeCcCCccc
Q psy4257 181 HNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK---TFLPALEELFVSHNSLT 256 (419)
Q Consensus 181 ~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~N~i~ 256 (419)
+|.+..+ +..+..+++|++|++++|.+..+....+..+++|+.|++++|.+.++....+ .....++.++|+++.+.
T Consensus 183 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp ETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred CCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence 5555544 3455556666666666666655543334445666666666666665443222 12445666666666554
Q ss_pred c-----cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCce
Q psy4257 257 R-----LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTK 330 (419)
Q Consensus 257 ~-----l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~ 330 (419)
+ +|..+..+++|+.|++++|+|+.++..++. .+++|+++++++|+|.|+|. +.|+..|++.....
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~-------~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~-- 333 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFD-------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-- 333 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTT-------TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTT--
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHh-------cCCCCCEEEeeCCCccCcCCCcHHHHHHHHhcccc--
Confidence 4 666788889999999999999988876432 47889999999999999996 88999999985443
Q ss_pred eccccCCCCC
Q psy4257 331 IHGETICQPD 340 (419)
Q Consensus 331 ~~~~~~c~~~ 340 (419)
+.....|..+
T Consensus 334 ~~~~~~C~~p 343 (353)
T 2z80_A 334 EQGSAKCSGS 343 (353)
T ss_dssp EESCCBBTTT
T ss_pred CCCCcccCCC
Confidence 3556778764
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=100.00 E-value=2e-34 Score=267.01 Aligned_cols=276 Identities=23% Similarity=0.282 Sum_probs=181.2
Q ss_pred ceeecccccCccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccC--hhhhcCCCCCCEEEccC
Q psy4257 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVR--RDEFQNLHNLDSISLQN 105 (419)
Q Consensus 29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~L~~ 105 (419)
+.++++++.++.+|..+. ++|++|++++|.+..++. .|.++++|+.|++++|++..+. +..+.++++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 456677777777765442 567777777777777653 4667777777777777776543 34566677777777777
Q ss_pred CcCccccccccCCccCcEEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 106 n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
|.+..++..+..+++|++|++++|.+.+... ..+..+++|++|++++|.+.....
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------ 143 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------------------------ 143 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST------------------------
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch------------------------
Confidence 7777777667777777777777777776544 456667777777777776654322
Q ss_pred cCchhhhcCCCCCcEEEcCCCCCCC-cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-cC
Q psy4257 185 ENLDGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DF 262 (419)
Q Consensus 185 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~~ 262 (419)
..+..+++|++|++++|.+.+ ..+..|..+++|++|+|++|.+.++.+..+..+++|+.|+|++|++++++. .+
T Consensus 144 ----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 144 ----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ----hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 233445555555555555544 334555556666666666666666555555556666666666666666543 45
Q ss_pred CCCCCcCEEecCCCcccccchhhhhhcccceecC-CcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257 263 HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL-NSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS 341 (419)
Q Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~ 341 (419)
..+++|+.|++++|++.+..+..+ ..+ ++++.+++++|+|.|+|.+.|+..|++.............|..+.
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~-------~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQEL-------QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSC-------CCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred cCcccCCEeECCCCCCcccCHHHH-------HhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 666667777777776666554322 224 478899999999999999999999999865444444556675543
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6.6e-34 Score=266.35 Aligned_cols=277 Identities=23% Similarity=0.332 Sum_probs=242.8
Q ss_pred cccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 26 ~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
.+|+.++++++.++.+|..+. ++|+.|++++|.+..++ ..|..+++|++|++++|++.++.+..|.++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 379999999999999987654 68999999999999986 478999999999999999999999999999999999999
Q ss_pred CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
+|+++.+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+..... ....+..+++|+.|++++|.+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI---ENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB---CTTGGGGCTTCCEEECCSSCC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc---ChhhccCCCCcCEEECCCCcc
Confidence 999999987665 799999999999999988899999999999999999875321 223577899999999999999
Q ss_pred cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCC
Q psy4257 185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHG 264 (419)
Q Consensus 185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~ 264 (419)
..+|..+. ++|++|++++|.++++.+..|..+++|++|+|++|.+.++....+..+++|++|+|++|++..+|..+..
T Consensus 184 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 184 TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 99886554 7899999999999999889999999999999999999999888888899999999999999999999999
Q ss_pred CCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257 265 LPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312 (419)
Q Consensus 265 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~ 312 (419)
+++|++|++++|+|+.++...+..... ......+..+++.+||+.+.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~-~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSC-CTTSCCCSEEECCSSSSCGG
T ss_pred CCCcCEEECCCCcCCccChhhcCCccc-ccccccccceEeecCccccc
Confidence 999999999999999998876532111 11246788999999998653
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.8e-34 Score=269.11 Aligned_cols=290 Identities=23% Similarity=0.347 Sum_probs=242.6
Q ss_pred ccccccccccccc-c-----cccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCC
Q psy4257 12 NNRLKSLEGQLGT-L-----SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI 84 (419)
Q Consensus 12 ~n~l~~l~~~~~~-~-----~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l 84 (419)
.+.+..+|..+.. | .+|+.++++++.++.+|..+. ++|+.|++++|.+..++ ..|.++++|++|++++|++
T Consensus 13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 90 (332)
T 2ft3_A 13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90 (332)
T ss_dssp ------------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCcc
Confidence 3445556543332 2 379999999999999987663 68999999999999985 5799999999999999999
Q ss_pred cccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC
Q psy4257 85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG 164 (419)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 164 (419)
.++.+..|.++++|++|++++|+++.+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|.+..... .
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~ 165 (332)
T 2ft3_A 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF---E 165 (332)
T ss_dssp CEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS---C
T ss_pred CccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC---C
Confidence 99999999999999999999999999987665 899999999999999888889999999999999999975322 1
Q ss_pred CCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCC
Q psy4257 165 KNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPA 244 (419)
Q Consensus 165 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 244 (419)
...+..+ +|+.|++++|.+..+|..+. ++|++|++++|.+.++.+..|..+++|++|+|++|.+.++.+..+..+++
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred cccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 2245555 89999999999999886554 78999999999999998899999999999999999999999888999999
Q ss_pred CceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc
Q psy4257 245 LEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312 (419)
Q Consensus 245 L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~ 312 (419)
|++|+|++|+++.+|..+..+++|+.|++++|+|+.++...+..... ......+..+++.+||+.+.
T Consensus 243 L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 243 LRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-GVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-CSSSCCBSEEECCSSSSCGG
T ss_pred CCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccccc-ccccccccceEeecCccccc
Confidence 99999999999999998999999999999999999998775532110 01146688999999998753
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-34 Score=298.92 Aligned_cols=292 Identities=21% Similarity=0.264 Sum_probs=211.3
Q ss_pred CCCCCcEEecccccccc------------------cccccc--cccccceeecccccCc-cCccccccccccceeecccc
Q psy4257 1 GLTDLNWLFLNNNRLKS------------------LEGQLG--TLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 59 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~~------------------l~~~~~--~~~~L~~L~L~~n~l~-~i~~~~~~~~~L~~L~l~~n 59 (419)
++++|++|+|++|.++. +|..+. .+++|+.|+|++|.+. .+|..|..+++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 36899999999999998 888877 8999999999999866 67888999999999999999
Q ss_pred c-ccC--chhhhcCC-------CCCCEEecCCCCCcccCh-hhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257 60 R-ITS--LDGLLRGL-------TKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 128 (419)
Q Consensus 60 ~-i~~--l~~~~~~l-------~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~ 128 (419)
. +++ +|..+..+ ++|+.|++++|++..++. ..|.++++|+.|+|++|+++.+| .+..+++|+.|+|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence 8 886 77655544 499999999999996654 37999999999999999999998 889999999999999
Q ss_pred ccccccChhhhcCCCC-ccEEEcCCCCCccccCCCCCCCcccCc--ccccEEEcCCCCCcCchhh----hc--CCCCCcE
Q psy4257 129 NQLTEFLLDDIRGLKR-LRTVDLSYNKINKFGTRNEGKNQVQGV--TNIFELKLQHNEIENLDGA----LM--GIHGLSR 199 (419)
Q Consensus 129 n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~----~~--~l~~L~~ 199 (419)
|.+.. .+..+..+++ |+.|++++|++..++. .+..+ .+|+.|++++|.+...... +. .+.+|+.
T Consensus 605 N~l~~-lp~~l~~l~~~L~~L~Ls~N~L~~lp~------~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 605 NQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPN------IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp SCCSC-CCTTSCEECTTCCEEECCSSCCCSCCS------CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred Ccccc-chHHHhhccccCCEEECcCCCCCcCch------hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 99984 5667888888 9999999999886543 22222 2366666666666432211 11 2335666
Q ss_pred EEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC-------CCceEeCcCCcccccCccCC--CCCCcCE
Q psy4257 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP-------ALEELFVSHNSLTRLDKDFH--GLPVLCK 270 (419)
Q Consensus 200 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------~L~~L~L~~N~i~~l~~~~~--~l~~L~~ 270 (419)
|+|++|.+..++...+..+++|+.|+|++|++..++...+.... +|+.|+|++|+|+.+|..+. .+++|+.
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCE
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCE
Confidence 66666666665444444566666666666666665555444322 66666666666666665554 6666666
Q ss_pred EecCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257 271 ADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 271 L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
|+|++|+|++++..+. .+++|+.|+|++|+
T Consensus 758 L~Ls~N~L~~lp~~l~--------~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 758 MDVSYNCFSSFPTQPL--------NSSQLKAFGIRHQR 787 (876)
T ss_dssp EECCSSCCSSCCCGGG--------GCTTCCEEECCCCB
T ss_pred EEeCCCCCCccchhhh--------cCCCCCEEECCCCC
Confidence 6666666666544322 35556666665554
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5e-34 Score=278.96 Aligned_cols=277 Identities=27% Similarity=0.345 Sum_probs=237.1
Q ss_pred CCCCCcEEeccccccc-ccc-cccccccccceeecccccCccC-ccccccccccceeecccccccC-chh--hhcCCCCC
Q psy4257 1 GLTDLNWLFLNNNRLK-SLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITS-LDG--LLRGLTKL 74 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~-~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~-l~~--~~~~l~~L 74 (419)
++++|++|++++|.+. .++ ..|..+++|++|+|++|.++.+ |..|..+++|++|++++|.+.+ ++. .|..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 4789999999999986 553 5678899999999999999976 6789999999999999999987 333 38899999
Q ss_pred CEEecCCCCCcccChhh-hcCCCCCCEEEccCCcCccc-ccccc----------------------------------CC
Q psy4257 75 QVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSM-NSSLS----------------------------------GL 118 (419)
Q Consensus 75 ~~L~l~~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~i-~~~l~----------------------------------~l 118 (419)
++|++++|++.++.+.. |.++++|++|++++|.+..+ +..+. .+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999987765 89999999999999998865 23332 33
Q ss_pred ccCcEEecccccccccChhhhcC---------------------------------------CCCccEEEcCCCCCcccc
Q psy4257 119 TKLAYLYLSHNQLTEFLLDDIRG---------------------------------------LKRLRTVDLSYNKINKFG 159 (419)
Q Consensus 119 ~~L~~L~l~~n~l~~~~~~~~~~---------------------------------------l~~L~~L~l~~n~l~~~~ 159 (419)
++|++|++++|.+.+..+..+.. .++|+.|++++|.+....
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 67999999999887654443321 257888999999888764
Q ss_pred CCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchh
Q psy4257 160 TRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238 (419)
Q Consensus 160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 238 (419)
+. .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+.++.+..|..+++|++|+|++|++.++.+..
T Consensus 292 ~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 292 KS-----VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp TT-----TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred hh-----hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 43 678899999999999999987 467889999999999999999999999999999999999999999998888
Q ss_pred ccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCCCcccccc
Q psy4257 239 KTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAIN 282 (419)
Q Consensus 239 ~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~ 282 (419)
|..+++|++|+|++|+|++++. .|..+++|+.|++++|++..-.
T Consensus 367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 9999999999999999999885 5789999999999999998643
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.1e-34 Score=293.84 Aligned_cols=271 Identities=25% Similarity=0.285 Sum_probs=187.5
Q ss_pred CCCCcEEeccccccc-ccccccccccccceeeccccc-Ccc--Ccccccccc-------ccceeecccccccCchh--hh
Q psy4257 2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQ-LEA--LPSDIQLFS-------QLGSLYANNNRITSLDG--LL 68 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~n~-l~~--i~~~~~~~~-------~L~~L~l~~n~i~~l~~--~~ 68 (419)
+++|++|+|++|.+. .+|..+..+++|+.|+|++|+ ++. +|..+..+. +|+.|++++|.+..+|. .|
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 688999999999854 678888899999999999998 874 787777666 99999999999999987 89
Q ss_pred cCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCcc-CcEEecccccccccChhhhcCCCC--c
Q psy4257 69 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK-LAYLYLSHNQLTEFLLDDIRGLKR--L 145 (419)
Q Consensus 69 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L 145 (419)
..+++|+.|++++|++..++ .|..+++|+.|+|++|++..+|..+..+++ |+.|+|++|.+.. .+..+..+.. |
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-CchhhhccccCCC
Confidence 99999999999999999665 789999999999999999999888999998 9999999999885 4566665543 8
Q ss_pred cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh-cCCCCCcEEEcCCCCCCCcCcccCCCC------
Q psy4257 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGL------ 218 (419)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l------ 218 (419)
+.|++++|++.+..+............+|+.|++++|.+..+|..+ ..+++|+.|+|++|.+..++...+...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 8888888888654322110000112235666666666666555433 245555555555555555433333322
Q ss_pred -CCCcEEEccCCcCcccCchhc-cCCCCCceEeCcCCcccccCccCCCCCCcCEEecCC
Q psy4257 219 -DSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275 (419)
Q Consensus 219 -~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~ 275 (419)
++|+.|+|++|+++.++...+ ..+++|+.|+|++|+|.++|..+..+++|+.|+|++
T Consensus 727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence 155555555555554443322 245555555555555555554444555555555543
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-34 Score=289.70 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=108.3
Q ss_pred CCCcEEecccccccccc-cccccccccceeecccccCccC-ccccccccccceeecccccccCc-hhhhcCCCCCCEEec
Q psy4257 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM 79 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l 79 (419)
++|++|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|.++++|++|++++|.+..+ |..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46888888888888775 3677788888888888888876 45688888888888888888887 677888888888888
Q ss_pred CCCCCcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEecccccccccChh
Q psy4257 80 DFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLD 137 (419)
Q Consensus 80 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~~~~~ 137 (419)
++|++.++.+..|+++.+|++|++++|.+.. +|..+..+++|++|++++|.+.+..+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 8888888877778888888888888888874 577788888888888888877765443
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4e-33 Score=273.33 Aligned_cols=259 Identities=27% Similarity=0.423 Sum_probs=134.6
Q ss_pred CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 82 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n 82 (419)
++|+.|+++++.+..+++ +..+++|++|+|++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122 (466)
T ss_dssp HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence 345556666665555543 4445566666666665555543 5555556666666665555544 555555666666555
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcCccccc--------------------cccCCccCcEEecccccccccChhhhcCC
Q psy4257 83 QITMVRRDEFQNLHNLDSISLQNNQITSMNS--------------------SLSGLTKLAYLYLSHNQLTEFLLDDIRGL 142 (419)
Q Consensus 83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 142 (419)
.+.++.+ +.++++|++|++++|.+..++. .+..+++|++|++++|.+.+. ..+..+
T Consensus 123 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l 198 (466)
T 1o6v_A 123 QITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKL 198 (466)
T ss_dssp CCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred CCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccC
Confidence 5555532 5555555555555555443321 244556666666666666554 235566
Q ss_pred CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc
Q psy4257 143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222 (419)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 222 (419)
++|+.|++++|.+....+ +..+++|++|++++|.+..++ .+..+++|+.|++++|.+.++.+ +..+++|+
T Consensus 199 ~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP-------LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp TTCSEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred CCCCEEEecCCccccccc-------ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 666666666666654431 233445555555555554442 24444555555555555544422 44444555
Q ss_pred EEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281 (419)
Q Consensus 223 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~ 281 (419)
+|++++|.+.+++. +..+++|+.|++++|++.+++. +..+++|+.|++++|+++++
T Consensus 269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 55555554444433 3344444444444444444432 34444444444444444443
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-32 Score=257.93 Aligned_cols=284 Identities=19% Similarity=0.308 Sum_probs=242.8
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~ 81 (419)
+++.++++++.++.+|..+. ++|+.|+|++|.++.++. .|..+++|++|++++|.+..+ +..|..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 68999999999999887654 689999999999998865 699999999999999999998 77899999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccc--cChhhhcCCCCccEEEcCCCCCccc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTE--FLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
|++..++...+ ++|++|++++|.+..++ ..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..+
T Consensus 110 n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 99998865543 79999999999999885 468899999999999999864 6677899999999999999999877
Q ss_pred cCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257 159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 237 (419)
+.. ..++|++|++++|.+..+ +..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+..++.
T Consensus 187 ~~~--------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~- 257 (330)
T 1xku_A 187 PQG--------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG- 257 (330)
T ss_dssp CSS--------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-
T ss_pred Ccc--------ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-
Confidence 543 127899999999999987 4678899999999999999999988889999999999999999998865
Q ss_pred hccCCCCCceEeCcCCcccccCc-cCC------CCCCcCEEecCCCcccc--cchhhhhhcccceecCCcceeEEecCCc
Q psy4257 238 SKTFLPALEELFVSHNSLTRLDK-DFH------GLPVLCKADLAHNNIKA--INIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 238 ~~~~l~~L~~L~L~~N~i~~l~~-~~~------~l~~L~~L~L~~N~l~~--~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
.+..+++|++|++++|+|+.++. .|. ....++.|++++|.+.. +++. .+..+..++.+++++|.
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-------~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-------TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-------GGTTCCCGGGEEC----
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc-------ccccccceeEEEecccC
Confidence 46779999999999999999873 343 24789999999999875 3333 23347788899999884
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-32 Score=269.78 Aligned_cols=281 Identities=26% Similarity=0.419 Sum_probs=196.7
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence 5778888888888887765 7778888888888888887765 7788888888888888887765 77778888888887
Q ss_pred CCCcccCh-------------------hhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCC
Q psy4257 82 NQITMVRR-------------------DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 142 (419)
Q Consensus 82 n~l~~~~~-------------------~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 142 (419)
|.+.++.. ..+.++++|++|++++|.+..++ .+..+++|++|++++|.+.+..+ +..+
T Consensus 144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l 220 (466)
T 1o6v_A 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGIL 220 (466)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGC
T ss_pred CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--cccc
Confidence 77665421 23566778888888888888774 47778888888888888877543 6667
Q ss_pred CCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc
Q psy4257 143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222 (419)
Q Consensus 143 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 222 (419)
++|+.|++++|++..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+.++.+ +..+++|+
T Consensus 221 ~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 290 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIG-------TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALT 290 (466)
T ss_dssp TTCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred CCCCEEECCCCCcccch-------hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence 78888888888776542 34566677777777777766654 5666677777777777766533 56666777
Q ss_pred EEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeE
Q psy4257 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRI 302 (419)
Q Consensus 223 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l 302 (419)
+|++++|++.++++ +..+++|+.|++++|++.+++. +..+++|+.|++++|++++++. +..+++|+.+
T Consensus 291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---------l~~l~~L~~L 358 (466)
T 1o6v_A 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS---------LANLTNINWL 358 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG---------GTTCTTCCEE
T ss_pred eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchh---------hccCCCCCEE
Confidence 77777776666544 4556666666666666666543 5566666666666666665521 2235556666
Q ss_pred EecCCccc
Q psy4257 303 YLEGNPVL 310 (419)
Q Consensus 303 ~l~~Np~~ 310 (419)
++++|++.
T Consensus 359 ~l~~n~l~ 366 (466)
T 1o6v_A 359 SAGHNQIS 366 (466)
T ss_dssp ECCSSCCC
T ss_pred eCCCCccC
Confidence 66666554
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.2e-33 Score=260.47 Aligned_cols=283 Identities=22% Similarity=0.323 Sum_probs=242.6
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~ 81 (419)
+++.++++++.++.+|..+. ++|+.|+|++|.++.++ ..|..+++|++|++++|.+..+ +..|.++++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 58999999999999987664 69999999999999885 4799999999999999999997 67899999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEecccccccc--cChhhhcCCCCccEEEcCCCCCccc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE--FLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
|++..++...+ ++|++|++++|++..++. .+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|++..+
T Consensus 112 n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 99998876544 799999999999998865 58999999999999999964 667778887 999999999999887
Q ss_pred cCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch
Q psy4257 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 237 (419)
+.. ..++|++|++++|.+..++ ..+..+++|++|++++|.+.++.+..|..+++|++|+|++|++..++..
T Consensus 188 ~~~--------~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 188 PKD--------LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp CSS--------SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred Ccc--------ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 543 1268999999999999886 6788999999999999999999888999999999999999999988764
Q ss_pred hccCCCCCceEeCcCCcccccCc-cCCC------CCCcCEEecCCCccc--ccchhhhhhcccceecCCcceeEEecCCc
Q psy4257 238 SKTFLPALEELFVSHNSLTRLDK-DFHG------LPVLCKADLAHNNIK--AINIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 238 ~~~~l~~L~~L~L~~N~i~~l~~-~~~~------l~~L~~L~L~~N~l~--~~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
+..+++|+.|++++|+|+.++. .|.. ...|+.|++++|.+. .+.+.. +..++.++.+++++|.
T Consensus 260 -l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~-------~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 -LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT-------FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG-------GTTBCCSTTEEC----
T ss_pred -hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc-------ccccchhhhhhccccc
Confidence 7779999999999999999873 3433 467999999999988 444443 3347888999998874
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=263.89 Aligned_cols=274 Identities=24% Similarity=0.329 Sum_probs=235.9
Q ss_pred ccccceeecccccCccCccc-cccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 25 LSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~-~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
+.+|+.|++++|.++.+|.. |..+++|++|++++|.+..++ ..|..+++|++|++++|.+.++.+..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 68999999999999999875 789999999999999999986 5899999999999999999999999999999999999
Q ss_pred ccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC-----------CCcccC
Q psy4257 103 LQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG 170 (419)
Q Consensus 103 L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~~~~~~ 170 (419)
+++|+++.+|.. |..+++|++|++++|.+.+..+..|..+++|+.|++++|++..++..... ...+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 999999999865 68999999999999999998888899999999999999999876422100 001122
Q ss_pred cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeC
Q psy4257 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV 250 (419)
Q Consensus 171 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 250 (419)
..+|++|++++|.+..++.. ..++|+.|++++|.+++. ..+..+++|++|+|++|.+.++.+..|..+++|+.|+|
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 34566677777777666543 246899999999999876 47888999999999999999998888999999999999
Q ss_pred cCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccc
Q psy4257 251 SHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL 310 (419)
Q Consensus 251 ~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~ 310 (419)
++|+++.++..+..+++|+.|++++|+++.++.... .+++|+.|++++|++.
T Consensus 280 ~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--------QFDRLENLYLDHNSIV 331 (390)
T ss_dssp CSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--------HHTTCSEEECCSSCCC
T ss_pred CCCcCcccCcccCCCCCCCEEECCCCcceecCcccc--------ccCcCCEEECCCCccc
Confidence 999999999888889999999999999998876543 3788999999999874
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.3e-32 Score=279.28 Aligned_cols=303 Identities=25% Similarity=0.327 Sum_probs=236.9
Q ss_pred CCCCcEEecccccccccc-cccccccc--cceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCE
Q psy4257 2 LTDLNWLFLNNNRLKSLE-GQLGTLSK--LQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQV 76 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~-~~~~~~~~--L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~ 76 (419)
.++|+.|++++|.+..+. ..+..++. |+.|+|++|.++.++ ..|..+++|++|++++|.+.++ +..|.++++|+.
T Consensus 221 ~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 300 (680)
T 1ziw_A 221 NTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCE
T ss_pred hccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccE
Confidence 378999999999998654 55666654 999999999999774 5789999999999999999986 568999999999
Q ss_pred EecCCCCCc---------ccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecc-------------------
Q psy4257 77 FNMDFNQIT---------MVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLS------------------- 127 (419)
Q Consensus 77 L~l~~n~l~---------~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~------------------- 127 (419)
|++++|... .+....|..+++|++|++++|.+..++ ..|..+++|++|+++
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 999987543 344457889999999999999998764 446666666665554
Q ss_pred ---------cccccccChhhhcCCCCccEEEcCCCCCccc-cCCC-------------------CCCCcccCcccccEEE
Q psy4257 128 ---------HNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-GTRN-------------------EGKNQVQGVTNIFELK 178 (419)
Q Consensus 128 ---------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~-------------------~~~~~~~~~~~L~~L~ 178 (419)
+|.+.+..+..|..+++|+.|++++|.+.+. +... .....+..+++|+.|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 4556666677888999999999999998742 2110 0111233344455555
Q ss_pred cCCCCCc---CchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCch--------hccCCCCCce
Q psy4257 179 LQHNEIE---NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET--------SKTFLPALEE 247 (419)
Q Consensus 179 l~~n~l~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------~~~~l~~L~~ 247 (419)
+++|.+. .+|..+..+++|+.|++++|.++++.+..|.++++|++|+|++|+++.+... .|..+++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 5555443 3456677888899999999999998888889999999999999998876432 3677889999
Q ss_pred EeCcCCcccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 248 LFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 248 L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
|+|++|+++.+|. .|.++++|+.|+|++|+|+.++...+. .+++|+.+++++|.+..
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-------~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN-------NQVSLKSLNLQKNLITS 598 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-------TCTTCCEEECTTSCCCB
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC-------CCCCCCEEECCCCcCCc
Confidence 9999999999885 588999999999999999998876543 47899999999998754
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=278.49 Aligned_cols=301 Identities=25% Similarity=0.294 Sum_probs=197.1
Q ss_pred CCcEEecccccccccc-cccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257 4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD 80 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~ 80 (419)
++++|++++|.++.++ ..|..+++|++|+|++|.++.++ ..|..+++|++|++++|.+..++ ..|.++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 5778888888887664 45677888888888888887764 45777888888888888887764 567778888888888
Q ss_pred CCCCcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEecccccccccChhhhcCCCCc----cEEEcCCCC
Q psy4257 81 FNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL----RTVDLSYNK 154 (419)
Q Consensus 81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~n~ 154 (419)
+|++..+....|+++.+|++|++++|.+.. +|..+..+++|++|++++|.+.+..+..+..+.+| +.|++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 888877776667778888888888887775 46777777788888877777665544444333333 333333333
Q ss_pred --------------------------------------------------------------------------------
Q psy4257 155 -------------------------------------------------------------------------------- 154 (419)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (419)
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence
Q ss_pred -------------------------CccccCCCCC-----------------CC-------------------cccCccc
Q psy4257 155 -------------------------INKFGTRNEG-----------------KN-------------------QVQGVTN 173 (419)
Q Consensus 155 -------------------------l~~~~~~~~~-----------------~~-------------------~~~~~~~ 173 (419)
+..++..... .. ....+++
T Consensus 269 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (570)
T 2z63_A 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348 (570)
T ss_dssp EEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred hhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCC
Confidence 2222110000 00 0023455
Q ss_pred ccEEEcCCCCCcCc---hhhhcCCCC-----------------------CcEEEcCCCCCCCcCc-ccCCCCCCCcEEEc
Q psy4257 174 IFELKLQHNEIENL---DGALMGIHG-----------------------LSRLDLSHNKLRTISP-DDFIGLDSLKMLDI 226 (419)
Q Consensus 174 L~~L~l~~n~l~~~---~~~~~~l~~-----------------------L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 226 (419)
|++|++++|.+..+ +..+..+++ |++|++++|.+.++.+ ..|..+++|++|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 56666666655543 233444444 4455555554444433 35666677777777
Q ss_pred cCCcCcccCchhccCCCCCceEeCcCCccc--ccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEe
Q psy4257 227 SHNLLTTLEETSKTFLPALEELFVSHNSLT--RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYL 304 (419)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~--~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l 304 (419)
++|.+.++.+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|+++++.+..+ ..+++|+.|++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-------~~l~~L~~L~l 501 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-------NSLSSLQVLNM 501 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-------TTCTTCCEEEC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh-------hcccCCCEEeC
Confidence 777777766666777778888888888776 367777788888888888888877755432 24778888888
Q ss_pred cCCcccc
Q psy4257 305 EGNPVLC 311 (419)
Q Consensus 305 ~~Np~~c 311 (419)
++|.+..
T Consensus 502 ~~n~l~~ 508 (570)
T 2z63_A 502 ASNQLKS 508 (570)
T ss_dssp CSSCCSC
T ss_pred CCCcCCC
Confidence 8887654
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-33 Score=280.26 Aligned_cols=279 Identities=17% Similarity=0.220 Sum_probs=215.6
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccC-ccccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~ 81 (419)
.....+++++.++.+|..+. ++|++|+|++|.++.+ |..|..+++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 6 ~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 6 ASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 34457888999999987664 7999999999999977 567999999999999999999975 6899999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccc--cccccCCccCcEEeccccc-ccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
|++.++.+..|+++++|++|++++|.++.+ +..+..+++|++|++++|. +....+..|..+++|++|++++|++...
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999999999999999999999999999954 5789999999999999998 5666667899999999999999998865
Q ss_pred cCCCCCCC-------------------cccCcccccEEEcCCCCCc----------------------------------
Q psy4257 159 GTRNEGKN-------------------QVQGVTNIFELKLQHNEIE---------------------------------- 185 (419)
Q Consensus 159 ~~~~~~~~-------------------~~~~~~~L~~L~l~~n~l~---------------------------------- 185 (419)
.+.....- .+..+++|+.|++++|.+.
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 33211000 0012334444444444333
Q ss_pred --------------------------------------------------------------------------------
Q psy4257 186 -------------------------------------------------------------------------------- 185 (419)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (419)
T Consensus 244 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred HHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence
Q ss_pred Cchhhh-cCCCCCcEEEcCCCCCCCcCc---ccCCCCCCCcEEEccCCcCcccCc--hhccCCCCCceEeCcCCcccccC
Q psy4257 186 NLDGAL-MGIHGLSRLDLSHNKLRTISP---DDFIGLDSLKMLDISHNLLTTLEE--TSKTFLPALEELFVSHNSLTRLD 259 (419)
Q Consensus 186 ~~~~~~-~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~i~~l~ 259 (419)
.+|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|+|++|++++++. ..+..+++|++|++++|+++.+|
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCC
Confidence 233222 346677777777777766432 336667788888888888877653 45677888888888888888888
Q ss_pred ccCCCCCCcCEEecCCCcccccchh
Q psy4257 260 KDFHGLPVLCKADLAHNNIKAINIQ 284 (419)
Q Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (419)
..+..+++|++|++++|+|+.++..
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~ 428 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTC 428 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTT
T ss_pred hhhcccccccEEECCCCCcccccch
Confidence 7777788888888888888766543
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=272.86 Aligned_cols=142 Identities=23% Similarity=0.288 Sum_probs=122.4
Q ss_pred cEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCEEecCCCC
Q psy4257 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~n~ 83 (419)
++|++++|.++.+|..+. ++|++|+|++|.++.++ ..|..+++|++|++++|.+.++ |..|.++++|++|++++|+
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 589999999999997666 89999999999999886 5799999999999999999997 6789999999999999999
Q ss_pred CcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEecccccccccChhhhcCCCCc--cEEEcCCCCC
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL--RTVDLSYNKI 155 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l 155 (419)
+..++.. .+++|++|++++|+++. +|..+..+++|++|++++|.+.+. .+..+++| +.|++++|.+
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeecccc
Confidence 9988654 79999999999999996 468899999999999999998762 34444555 6666666655
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-32 Score=274.26 Aligned_cols=292 Identities=21% Similarity=0.229 Sum_probs=205.3
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCc-hhhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~ 81 (419)
..+++++++|.++.+|..+. ++|+.|+|++|.|+.++ ..|..+++|++|++++|.|.++ +..|.++++|++|++++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 44789999999999987664 79999999999999886 5799999999999999999998 57899999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCC--cc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI--NK 157 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~ 157 (419)
|++..++.. .+++|++|++++|+++.++ ..+..+++|++|++++|.+.+.....+..+ +|+.|++++|++ ..
T Consensus 110 N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 110 NRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKG 185 (562)
T ss_dssp SCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCS
T ss_pred CcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccc
Confidence 999988765 7999999999999999874 689999999999999999876433333332 236666666655 11
Q ss_pred ccCCC---------------------------------------------------------------------------
Q psy4257 158 FGTRN--------------------------------------------------------------------------- 162 (419)
Q Consensus 158 ~~~~~--------------------------------------------------------------------------- 162 (419)
..+..
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 11000
Q ss_pred -------------------------CCCCcc-------------------------------------------------
Q psy4257 163 -------------------------EGKNQV------------------------------------------------- 168 (419)
Q Consensus 163 -------------------------~~~~~~------------------------------------------------- 168 (419)
..+..+
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~ 345 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccc
Confidence 000000
Q ss_pred ----cCcccccEEEcCCCCCcC-chhhhcCCCCCcEEEcCCCCCCCcC--cccCCCCCCCcEEEccCCcCcc-cCchhcc
Q psy4257 169 ----QGVTNIFELKLQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSLKMLDISHNLLTT-LEETSKT 240 (419)
Q Consensus 169 ----~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~ 240 (419)
..+++|++|++++|.+.. ++..+..+++|++|++++|+++++. +..|..+++|++|++++|.+.+ ++...+.
T Consensus 346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 344555666666665554 3445555666666666666665543 2345566666666666666655 5555555
Q ss_pred CCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 241 FLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 241 ~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
.+++|++|++++|++++ ++..+. ++|+.|++++|+|+.++..+. .+++|+.+++++|.+..
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~--------~l~~L~~L~L~~N~l~~ 487 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVT--------HLQALQELNVASNQLKS 487 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTT--------SSCCCSEEECCSSCCCC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhc--------CCCCCCEEECCCCCCCC
Confidence 56666666666666643 222221 567777777777777665433 47888999999998763
No 42
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=100.00 E-value=9e-32 Score=246.52 Aligned_cols=238 Identities=24% Similarity=0.323 Sum_probs=177.1
Q ss_pred ceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcEEeccccc
Q psy4257 52 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 130 (419)
Q Consensus 52 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~l~~n~ 130 (419)
+.++++++.+..+|..+ .++|+.|++++|.+.++.+..|.++++|++|++++|.++.+ +..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 45566666666665322 35677777777777776666666677777777777766665 4556666667777777665
Q ss_pred -ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC
Q psy4257 131 -LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209 (419)
Q Consensus 131 -l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 209 (419)
+....+..|..+++|++|++++|++..+. +..+..+++|++|++++|.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------------~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------------PGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCC----------------------------TTTTTTCTTCCEEECCSSCCCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEEC----------------------------HhHhhCCcCCCEEECCCCcccc
Confidence 65555566666666666666666655432 2345667778888888888887
Q ss_pred cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc-CccCCCCCCcCEEecCCCcccccchhhhhh
Q psy4257 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALK 288 (419)
Q Consensus 210 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (419)
+.+..|..+++|++|+|++|++++++...|..+++|+.|+|++|.+.++ +..|..+++|+.|++++|+++.++...+.
T Consensus 144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~- 222 (285)
T 1ozn_A 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA- 222 (285)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-
T ss_pred cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc-
Confidence 7777788888888888888888888877788888888888888888886 56788889999999999999988876443
Q ss_pred cccceecCCcceeEEecCCccccccchHHHHHHHHhhc
Q psy4257 289 TQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETIN 326 (419)
Q Consensus 289 ~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~ 326 (419)
.+++|+.+++++|||.|+|.+.|+..|++...
T Consensus 223 ------~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~ 254 (285)
T 1ozn_A 223 ------PLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254 (285)
T ss_dssp ------TCTTCCEEECCSSCEECSGGGHHHHHHHHHCC
T ss_pred ------cCcccCEEeccCCCccCCCCcHHHHHHHHhcc
Confidence 47889999999999999999999999999854
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-31 Score=260.89 Aligned_cols=275 Identities=27% Similarity=0.302 Sum_probs=197.9
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+++|++|++++|.++.++ .+..+++|++|+|++|.++.++ ++.+++|++|++++|.+.+++ +..+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 578999999999998886 5788999999999999999885 788899999999999999886 78899999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCC
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 161 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 161 (419)
|++.+++ +..+++|++|++++|+++.++ +..+++|++|++++|...+.. .+..+++|+.|++++|++..++
T Consensus 116 N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~-- 186 (457)
T 3bz5_A 116 NKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD-- 186 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--
T ss_pred CcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--
Confidence 9998873 788899999999999998874 677788888888888543333 4666777888888887777643
Q ss_pred CCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc--
Q psy4257 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-- 239 (419)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-- 239 (419)
+..+++|+.|++++|.++.++ +..+++|++|++++|++++++ +..+++|+.|++++|++++++...+
T Consensus 187 ------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 187 ------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp ------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTT
T ss_pred ------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCC
Confidence 344556666666666666552 455566666666666666542 4555666666666666555543222
Q ss_pred ---------------------------cCCCCCceEeCcCCcccc-cCc--------cCCCCCCcCEEecCCCcccccch
Q psy4257 240 ---------------------------TFLPALEELFVSHNSLTR-LDK--------DFHGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 240 ---------------------------~~l~~L~~L~L~~N~i~~-l~~--------~~~~l~~L~~L~L~~N~l~~~~~ 283 (419)
..+++|+.|++++|...+ +|. .+..+++|+.|++++|+|++++
T Consensus 256 L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~- 334 (457)
T 3bz5_A 256 LTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD- 334 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-
T ss_pred CCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-
Confidence 234556666666664221 221 2556678888888888888764
Q ss_pred hhhhhcccceecCCcceeEEecCCcccc
Q psy4257 284 QLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
+..+++|+.+++++|.+..
T Consensus 335 ---------l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 335 ---------VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp ---------CTTCTTCSEEECCSSCCCB
T ss_pred ---------cccCCcCcEEECCCCCCCC
Confidence 2237788888888888764
No 44
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-32 Score=284.69 Aligned_cols=281 Identities=25% Similarity=0.334 Sum_probs=198.6
Q ss_pred CCCCcEEeccccccccc-ccccccccccceeeccccc-CccC-ccccccccccceeecccccccCc-hhhhcCCCCCCEE
Q psy4257 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ-LEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF 77 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~-l~~i-~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L 77 (419)
.++|++|+|++|.|+.+ +..|..+++|+.|+|++|. +..+ |..|.++++|++|+|++|.|..+ |..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 36789999999999876 4678889999999999984 4466 56788999999999999999886 6788899999999
Q ss_pred ecCCCCCcccChh--hhcCCCCCCEEEccCCcCcccc--ccccCCccCcEEecccccccccChhhhcCC--CCccEEEcC
Q psy4257 78 NMDFNQITMVRRD--EFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLS 151 (419)
Q Consensus 78 ~l~~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~ 151 (419)
++++|.+.+..+. .|.++++|++|+|++|.+..++ ..|..+++|++|++++|.+.+..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 9999998874443 4888999999999999888763 468889999999999998887666665544 455555555
Q ss_pred CCCCccccCCC------------------------------CC-------------------------------CCcccC
Q psy4257 152 YNKINKFGTRN------------------------------EG-------------------------------KNQVQG 170 (419)
Q Consensus 152 ~n~l~~~~~~~------------------------------~~-------------------------------~~~~~~ 170 (419)
+|.+....... .. ...+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 55443321110 00 000111
Q ss_pred --cccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCce
Q psy4257 171 --VTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247 (419)
Q Consensus 171 --~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 247 (419)
..+|+.|++++|.+..++ ..+..+++|+.|+|++|.+.++.+..|.++++|++|+|++|.+..+.+..|..+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 145666666666666543 44566667777777777777666666777777777777777776666666666777777
Q ss_pred EeCcCCcccccC-ccCCCCCCcCEEecCCCcccccc
Q psy4257 248 LFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAIN 282 (419)
Q Consensus 248 L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~ 282 (419)
|++++|++..++ ..|..+++|+.|+|++|.++.++
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 777777776665 34666777777777777766554
No 45
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=100.00 E-value=3.6e-31 Score=242.68 Aligned_cols=222 Identities=25% Similarity=0.309 Sum_probs=193.7
Q ss_pred hhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccC
Q psy4257 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQG 170 (419)
Q Consensus 91 ~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 170 (419)
.+.++++++.++++++.++.+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+..++. ...
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~ 75 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------DGT 75 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-------CSC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-------CCC
Confidence 35677788888888888888876654 678888888888888877888888889999999988887653 256
Q ss_pred cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeC
Q psy4257 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV 250 (419)
Q Consensus 171 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 250 (419)
+++|+.|++++|.+..+|..+..+++|++|++++|+++++.+..|.++++|++|+|++|++..++...|..+++|+.|+|
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 78899999999999989888889999999999999999998899999999999999999999999988999999999999
Q ss_pred cCCcccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCc
Q psy4257 251 SHNSLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNT 329 (419)
Q Consensus 251 ~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~ 329 (419)
++|+|+.++. .|..+++|+.|+|++|+|+.++..++ ....++.+++.+|||.|+|.+.|+..|++.....+
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~--------~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~~~~ 227 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF--------GSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 227 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--------TTCCCSEEECCSCCBCCSGGGHHHHHHHHHTGGGB
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc--------ccccCCeEEeCCCCccCcCccHHHHHHHHhCcccc
Confidence 9999999985 46889999999999999999987654 35689999999999999999999999999854433
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-32 Score=255.62 Aligned_cols=249 Identities=17% Similarity=0.177 Sum_probs=159.3
Q ss_pred ccceeecccccccC---chhhhcCCCCCCEEecCC-CCCcccChhhhcCCCCCCEEEccCCcCc-cccccccCCccCcEE
Q psy4257 50 QLGSLYANNNRITS---LDGLLRGLTKLQVFNMDF-NQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYL 124 (419)
Q Consensus 50 ~L~~L~l~~n~i~~---l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~~~l~~l~~L~~L 124 (419)
+++.|++++|.+.+ +|..|..+++|++|++++ |.+.+..+..|.++++|++|++++|.++ .+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44445555554442 344445555555555552 4444444444555555555555555554 344445555555555
Q ss_pred ecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcc-cccEEEcCCCCCc-CchhhhcCCCCCcEEEc
Q psy4257 125 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT-NIFELKLQHNEIE-NLDGALMGIHGLSRLDL 202 (419)
Q Consensus 125 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~L 202 (419)
++++|.+.+..+..+..+++|++|++++|++.+..+ ..+..+. +|++|++++|.+. .+|..+..+. |++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-----~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-----DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-----GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-----HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 555555554444455555555555555555542211 1233333 5555555555554 3455666665 999999
Q ss_pred CCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc-ccCccCCCCCCcCEEecCCCccccc
Q psy4257 203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNIKAI 281 (419)
Q Consensus 203 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~l~~~~~~l~~L~~L~L~~N~l~~~ 281 (419)
++|.+.+..+..|..+++|++|+|++|.+.+..+. +..+++|++|+|++|+|. .+|..|..+++|+.|+|++|++++.
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99998888888889999999999999998876554 677889999999999998 4778888999999999999999854
Q ss_pred chhhhhhcccceecCCcceeEEecCCcccccc
Q psy4257 282 NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313 (419)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 313 (419)
.+.. ..+++++.+++.+|++.|+.
T Consensus 284 ip~~--------~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 284 IPQG--------GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCCS--------TTGGGSCGGGTCSSSEEEST
T ss_pred CCCC--------ccccccChHHhcCCCCccCC
Confidence 3322 23778889999999999974
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-31 Score=270.04 Aligned_cols=275 Identities=24% Similarity=0.334 Sum_probs=236.9
Q ss_pred ccccceeecccccCccCccc-cccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 25 LSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~-~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
+.+++.|++++|.+..+|.. |..+++|+.|+|++|.|..++ ..|..+++|+.|+|++|.+.++++..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 67899999999999999865 788999999999999999986 5899999999999999999999999999999999999
Q ss_pred ccCCcCcccccc-ccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCC-----------CCcccC
Q psy4257 103 LQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG-----------KNQVQG 170 (419)
Q Consensus 103 L~~n~l~~i~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~~~~~~ 170 (419)
|++|.|+.+|.. |..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+..++..... ...+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 999999999765 68999999999999999999888999999999999999999876422110 001123
Q ss_pred cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeC
Q psy4257 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV 250 (419)
Q Consensus 171 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 250 (419)
..+|+.|++++|.+..++..+ ..+|+.|+|++|.+++. ..+..+++|+.|+|++|.+.++.+..|..+++|+.|+|
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 285 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence 345666677777666665433 36799999999999875 67888999999999999999998889999999999999
Q ss_pred cCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 251 SHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 251 ~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
++|.+++++..+..+++|+.|+|++|.+..++..+. .+++|+.|++++|++..
T Consensus 286 s~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~--------~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--------QFDRLENLYLDHNSIVT 338 (597)
T ss_dssp TTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHH--------HHTTCSEEECCSSCCCC
T ss_pred CCCCCCCCCcccccCCCCcEEECCCCCCCccCcccc--------cCCCCCEEECCCCCCCC
Confidence 999999999888889999999999999999887543 37889999999998743
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=3.9e-32 Score=252.18 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=200.4
Q ss_pred cccceeecccccCc---cCccccccccccceeeccc-cccc-CchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257 26 SKLQLLVIEQNQLE---ALPSDIQLFSQLGSLYANN-NRIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100 (419)
Q Consensus 26 ~~L~~L~L~~n~l~---~i~~~~~~~~~L~~L~l~~-n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 100 (419)
.+++.|+|++|.+. .+|..+..+++|++|++++ |.+. .+|..|..+++|++|++++|++.+..+..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 4677888888888888884 7776 46777888888888888888888777778888888888
Q ss_pred EEccCCcCc-cccccccCCccCcEEecccccccccChhhhcCCC-CccEEEcCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257 101 ISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-RLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178 (419)
Q Consensus 101 L~L~~n~l~-~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 178 (419)
|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+. +|+.|++++|++.+..+. .+..+. |+.|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-----~~~~l~-L~~L~ 203 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-----TFANLN-LAFVD 203 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-----GGGGCC-CSEEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-----HHhCCc-ccEEE
Confidence 888888888 5677788888888888888888877777888887 888888888888754332 344555 88888
Q ss_pred cCCCCCcC-chhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257 179 LQHNEIEN-LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 179 l~~n~l~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 257 (419)
+++|.+.. ++..+..+++|+.|++++|.+++..+. +..+++|++|+|++|.+.+..+..+..+++|++|+|++|++++
T Consensus 204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 88888874 456778889999999999999877554 7888999999999999987777788889999999999999985
Q ss_pred -cCccCCCCCCcCEEecCCCc-cccc
Q psy4257 258 -LDKDFHGLPVLCKADLAHNN-IKAI 281 (419)
Q Consensus 258 -l~~~~~~l~~L~~L~L~~N~-l~~~ 281 (419)
+|. ...+++|+.+++++|. +.+.
T Consensus 283 ~ip~-~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 283 EIPQ-GGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp ECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred cCCC-CccccccChHHhcCCCCccCC
Confidence 554 4788999999999997 4443
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.2e-30 Score=254.18 Aligned_cols=255 Identities=24% Similarity=0.333 Sum_probs=191.3
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+++|++|++++|.++.++ +..+++|+.|++++|.++.++ ++.+++|++|++++|.+.+++ +..+++|+.|++++
T Consensus 63 l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~ 136 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCAR 136 (457)
T ss_dssp CTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTT
T ss_pred cCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCC
Confidence 678999999999998874 777899999999999998874 788899999999999998886 78889999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCC-cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 160 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 160 (419)
|+++++. ++++++|++|++++| .+..+ .+..+++|++|++++|.++++. +..+++|+.|++++|++..+
T Consensus 137 N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 137 NTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC--
T ss_pred Cccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee--
Confidence 9988873 677778888888877 44454 4566777777777777777742 66667777777777777654
Q ss_pred CCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCC------------------------
Q psy4257 161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI------------------------ 216 (419)
Q Consensus 161 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------------------ 216 (419)
.+..+++|+.|++++|+++.+| +..+++|++|++++|.++++.+..+.
T Consensus 207 ------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 207 ------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp ------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 1455666777777777776665 55666677777777666665433332
Q ss_pred -----CCCCCcEEEccCCcCcc--------cCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccc
Q psy4257 217 -----GLDSLKMLDISHNLLTT--------LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282 (419)
Q Consensus 217 -----~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~ 282 (419)
.+++|+.|++++|...+ +....+..+++|++|++++|++++++ +..+++|+.|++++|+|++++
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCT
T ss_pred cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCcc
Confidence 34566666666664322 11123566789999999999999984 899999999999999999864
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.5e-31 Score=250.16 Aligned_cols=273 Identities=19% Similarity=0.235 Sum_probs=237.5
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~ 81 (419)
.....+++++.++.+|..+. ++|+.|++++|.++.++. .|..+++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 44567889999999987664 599999999999998876 7999999999999999999974 6799999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccc--cccCCccCcEEecccc-cccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
|++.++++..|.++++|++|++++|+++.++. .+..+++|++|++++| .+.+..+..|..+++|+.|++++|++...
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 99999999889999999999999999999976 7889999999999999 57887788999999999999999999877
Q ss_pred cCCCCCCCcccCcccccEEEcCCCCCcCchhhh-cCCCCCcEEEcCCCCCCCcCcccCC---CCCCCcEEEccCCcCccc
Q psy4257 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFI---GLDSLKMLDISHNLLTTL 234 (419)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~ 234 (419)
.+. .+..+++|++|++++|.+..++..+ ..+++|+.|++++|.++++.+..+. ....++.++|+++.+.+.
T Consensus 190 ~~~-----~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 190 EPK-----SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp CTT-----TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CHH-----HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 443 6778899999999999999888654 4589999999999999987655443 357789999999988763
Q ss_pred ----CchhccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEecCCCcccccch
Q psy4257 235 ----EETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 235 ----~~~~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~L~~N~l~~~~~ 283 (419)
.+..+..+++|+.|+|++|+++.+|.. |..+++|++|++++|.+..-.+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 234567899999999999999999976 5899999999999999986543
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.97 E-value=1.5e-30 Score=237.18 Aligned_cols=248 Identities=19% Similarity=0.282 Sum_probs=162.6
Q ss_pred eecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccc
Q psy4257 54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLT 132 (419)
Q Consensus 54 L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~ 132 (419)
++..+..+..+|..+. ++|+.|++++|++.++.+..|.++++|++|++++|++..++. .+..+++|++|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 3444444555554332 456666777776666666666666677777777776666543 5666666777777777766
Q ss_pred ccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC-
Q psy4257 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS- 211 (419)
Q Consensus 133 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~- 211 (419)
+..+..|..+++|++|++++|++..+... .+..+++|++|++++|.+.++.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------------~~~~l~~L~~L~l~~n~l~~~~l 141 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENF----------------------------PIGHLKTLKELNVAHNLIQSFKL 141 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTC----------------------------CCTTCTTCCEEECCSSCCCCCCC
T ss_pred ccChhhhcCCccccEEECCCCCccccCch----------------------------hcccCCCCCEEECcCCccceecC
Confidence 66666666667777777777666544321 2344555666666666665542
Q ss_pred cccCCCCCCCcEEEccCCcCcccCchhccCCCCCc----eEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhh
Q psy4257 212 PDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALE----ELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL 287 (419)
Q Consensus 212 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (419)
+..|..+++|++|+|++|++++++...+..+.+|+ .|++++|.+..++.......+|+.|++++|+++.++...+.
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc
Confidence 55566666666666666666666555555444454 67778888877775555556788888888888887765432
Q ss_pred hcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCceeccccCCCCC
Q psy4257 288 KTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTKIHGETICQPD 340 (419)
Q Consensus 288 ~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~~~~~~~c~~~ 340 (419)
.+++|+.+++++|||.|+|. +.|+..|++.. .....+...|..+
T Consensus 222 -------~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~--~~~~~~~~~C~~~ 266 (276)
T 2z62_A 222 -------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN--SQKEQGSAKCSGS 266 (276)
T ss_dssp -------TCCSCCEEECCSSCBCCCTTTTHHHHHHHHHT--GGGBCSCCBBTTT
T ss_pred -------ccccccEEEccCCcccccCCchHHHHHHHHhc--ccccCCCceeeCC
Confidence 37889999999999999995 88999999874 3344555677654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=2.5e-30 Score=252.44 Aligned_cols=246 Identities=27% Similarity=0.382 Sum_probs=221.6
Q ss_pred ccceeecccccCccCccccccccccceeecccccccCc-hhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257 27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 105 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 105 (419)
....++.++..++.+|..+. .+|+.|+|++|.|..+ +..|.++++|+.|+|++|+|.++.+..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 35788999999999987664 6899999999999987 57799999999999999999999999999999999999999
Q ss_pred CcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCC-CCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257 106 NQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY-NKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183 (419)
Q Consensus 106 n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (419)
|+|+.++. .|..+++|++|+|++|.+..+....|..+++|+.|++++ +.+..++.. .+..+++|+.|++++|.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-----~~~~l~~L~~L~L~~n~ 207 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-----AFEGLFNLKYLNLGMCN 207 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----TTTTCTTCCEEECTTSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-----hccCCCCCCEEECCCCc
Confidence 99998865 588899999999999999998888999999999999998 556555433 57788999999999999
Q ss_pred CcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccC
Q psy4257 184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDF 262 (419)
Q Consensus 184 l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~ 262 (419)
+..++ .+..+++|+.|+|++|.+.++.+..|.++++|+.|+|++|++..+.+..|..+++|+.|+|++|+|+.++ ..|
T Consensus 208 l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 208 IKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred ccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 99886 4778899999999999999999999999999999999999999999999999999999999999999988 457
Q ss_pred CCCCCcCEEecCCCcccc
Q psy4257 263 HGLPVLCKADLAHNNIKA 280 (419)
Q Consensus 263 ~~l~~L~~L~L~~N~l~~ 280 (419)
..+++|+.|+|++|.+..
T Consensus 287 ~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred ccccCCCEEEccCCCcCC
Confidence 889999999999998863
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=5.3e-30 Score=249.26 Aligned_cols=244 Identities=25% Similarity=0.390 Sum_probs=186.0
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCc-cccccccccceeecccccccCch-hhhcCCCCCCEEecCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 81 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~ 81 (419)
....++.++..++.+|..+. ++++.|+|++|+|+.++ ..|..+++|+.|+|++|.|..++ ..|.++++|+.|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 35678899999999987665 68999999999999885 57999999999999999999985 7899999999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccc-ccccccChhhhcCCCCccEEEcCCCCCcccc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (419)
|+++.+.+..|.++++|++|+|++|.|..++. .|..+++|++|++++ +.+..+....|.++++|+.|++++|++..++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99999999999999999999999999998864 789999999999999 4566666667888889999999888887553
Q ss_pred CCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc
Q psy4257 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 239 (419)
.+ ..+++|+.|+|++|.++++.+..|.++++|+.|+|++|++..+....|
T Consensus 202 -------~~-----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 202 -------NL-----------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp -------CC-----------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSS
T ss_pred -------cc-----------------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhh
Confidence 12 334455555555555555555555555555555555555555555555
Q ss_pred cCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCccc
Q psy4257 240 TFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIK 279 (419)
Q Consensus 240 ~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~ 279 (419)
..+++|+.|+|++|+|+.++ ..|..+++|+.|+|++|.+.
T Consensus 252 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55555555555555555554 23455556666666666553
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=1.6e-29 Score=253.73 Aligned_cols=258 Identities=27% Similarity=0.251 Sum_probs=224.9
Q ss_pred CCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCC
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~ 83 (419)
+++.|++++|.++.+|..+. ++|+.|+|++|.|+.+|. .+++|++|+|++|.|+.+|. .+++|++|++++|+
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 58899999999999987665 799999999999999987 57899999999999999986 77999999999999
Q ss_pred CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCC
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 163 (419)
+.+++. .+.+|+.|++++|+|+.+|.. +++|++|++++|.+.++.. .+.+|+.|++++|.+..++
T Consensus 113 l~~l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~---- 177 (622)
T 3g06_A 113 LTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP---- 177 (622)
T ss_dssp CCCCCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred CCCCCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc----
Confidence 999865 578999999999999999864 4899999999999987532 3578999999999998765
Q ss_pred CCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCC
Q psy4257 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243 (419)
Q Consensus 164 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 243 (419)
..+++|+.|++++|.+..++.. +++|+.|++++|.++.+.. .+++|+.|+|++|.|++++ ..++
T Consensus 178 -----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~ 241 (622)
T 3g06_A 178 -----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPS 241 (622)
T ss_dssp -----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred -----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCC
Confidence 3468899999999999988753 5789999999999998742 2478999999999999987 4478
Q ss_pred CCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 244 ~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
+|+.|+|++|+|+.+|. .+++|+.|+|++|+|+.++..+ ..+++|+.|++++|++..
T Consensus 242 ~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l--------~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL--------IHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG--------GGSCTTCEEECCSCCCCH
T ss_pred cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH--------hhccccCEEEecCCCCCC
Confidence 99999999999999986 6789999999999999887643 348899999999999864
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.1e-30 Score=237.29 Aligned_cols=246 Identities=25% Similarity=0.364 Sum_probs=204.2
Q ss_pred cEEecccccccccccccccccccceeecccccCccCccc-cccccccceeecccccccCc---hhhhcCCCCCCEEecCC
Q psy4257 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL---DGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~-~~~~~~L~~L~l~~n~i~~l---~~~~~~l~~L~~L~l~~ 81 (419)
+.++++++.++.+|..+. ++|+.|+|++|.++.+|.. |..+++|++|++++|.+..+ +..+.++++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 578999999999987554 6999999999999999865 79999999999999999865 56777899999999999
Q ss_pred CCCcccChhhhcCCCCCCEEEccCCcCccccc--cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcccc
Q psy4257 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159 (419)
Q Consensus 82 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (419)
|.+..++. .|.++++|++|++++|++..++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 88 n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99998754 58899999999999999998864 7899999999999999999888888999999999999999876410
Q ss_pred CCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhc
Q psy4257 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239 (419)
Q Consensus 160 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 239 (419)
++..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+.+++...+
T Consensus 167 ---------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 167 ---------------------------LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ---------------------------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ---------------------------chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 12345566777777777777777777777778888888888888887777777
Q ss_pred cCCCCCceEeCcCCcccccC-ccCCCCC-CcCEEecCCCccccc
Q psy4257 240 TFLPALEELFVSHNSLTRLD-KDFHGLP-VLCKADLAHNNIKAI 281 (419)
Q Consensus 240 ~~l~~L~~L~L~~N~i~~l~-~~~~~l~-~L~~L~L~~N~l~~~ 281 (419)
..+++|+.|+|++|++.+++ ..+..++ +|+.|+|++|.+..-
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 77888888888888887754 4566664 788888888888753
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=4.4e-29 Score=243.01 Aligned_cols=161 Identities=26% Similarity=0.312 Sum_probs=84.3
Q ss_pred cccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccC
Q psy4257 26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 105 (419)
Q Consensus 26 ~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 105 (419)
++|+.|++++|+++.+| .|+.+++|++|++++|.+.++|.. ..+|++|++++|++.+++ .|+++++|++|++++
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCc--cccCCCCCCEEECCC
Confidence 35555555555555554 355555555555555555555432 235555555555555543 355555666666666
Q ss_pred CcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257 106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185 (419)
Q Consensus 106 n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 185 (419)
|+++.+|... ++|++|++++|.+..+. .+..+++|+.|++++|++..++. .+.+|+.|++++|.+.
T Consensus 205 N~l~~l~~~~---~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~l~~---------~~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 205 NSLKKLPDLP---LSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPD---------LPPSLEALNVRDNYLT 270 (454)
T ss_dssp SCCSSCCCCC---TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCS---------CCTTCCEEECCSSCCS
T ss_pred CcCCcCCCCc---CcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCcccc---------cccccCEEECCCCccc
Confidence 6555554322 35556666666555432 35566666666666666654432 1244555555555555
Q ss_pred CchhhhcCCCCCcEEEcCCCCCCC
Q psy4257 186 NLDGALMGIHGLSRLDLSHNKLRT 209 (419)
Q Consensus 186 ~~~~~~~~l~~L~~L~Ls~n~l~~ 209 (419)
.+|.. +++|++|++++|.+++
T Consensus 271 ~l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 271 DLPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCCCC---CTTCCEEECCSSCCSE
T ss_pred ccCcc---cCcCCEEECcCCccCc
Confidence 54432 2445555555555544
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.97 E-value=1.9e-29 Score=253.02 Aligned_cols=245 Identities=27% Similarity=0.274 Sum_probs=216.1
Q ss_pred CCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCC
Q psy4257 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 82 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n 82 (419)
++|++|++++|.|+.++. .+++|+.|+|++|+|+.+|. .+++|++|++++|.|..++. .+.+|+.|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 579999999999998876 47899999999999999986 67899999999999999986 6789999999999
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCC
Q psy4257 83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162 (419)
Q Consensus 83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 162 (419)
+++.++. .+++|++|++++|+++.+|. .+.+|+.|++++|.+.++. ..+++|+.|++++|.+..++.
T Consensus 132 ~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~-- 198 (622)
T 3g06_A 132 QLTSLPV----LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT-- 198 (622)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred CCCcCCC----CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC--
Confidence 9999864 35899999999999999875 3468999999999999864 457899999999999987653
Q ss_pred CCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCC
Q psy4257 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242 (419)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 242 (419)
.+++|+.|++++|.+..++.. +++|+.|++++|.|+++. ..+++|+.|+|++|.|+.++. .+
T Consensus 199 -------~~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~----~~ 260 (622)
T 3g06_A 199 -------LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM----LP 260 (622)
T ss_dssp -------CCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CC
T ss_pred -------ccchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc----cc
Confidence 247899999999999988853 578999999999999874 456899999999999999876 47
Q ss_pred CCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhh
Q psy4257 243 PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL 287 (419)
Q Consensus 243 ~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (419)
++|+.|+|++|+|+.+|..+..+++|+.|+|++|.+++..+..+.
T Consensus 261 ~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 261 SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 899999999999999999999999999999999999987666543
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=8.9e-30 Score=247.87 Aligned_cols=249 Identities=21% Similarity=0.246 Sum_probs=139.3
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCc-cCcccccccccc-------------ceeecccccccCchhh
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQL-------------GSLYANNNRITSLDGL 67 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~-~i~~~~~~~~~L-------------~~L~l~~n~i~~l~~~ 67 (419)
.+.|++|++++|.++.+|..++.+++|++|++++|.+. .+|..++.+.+| ++|++++|.++++|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 35789999999999999988999999999999999887 678877777664 8888888888887752
Q ss_pred hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccE
Q psy4257 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147 (419)
Q Consensus 68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 147 (419)
.++|+.|++++|.+.+++. .+.+|++|++++|+++.++... ++|++|++++|.+.+++ .|..+++|++
T Consensus 90 ---~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp--~~~~l~~L~~ 157 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLP--ELQNSSFLKI 157 (454)
T ss_dssp ---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCC--CCTTCTTCCE
T ss_pred ---cCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCc--ccCCCCCCCE
Confidence 3678888888888887642 2367777777777777664321 56777777777777633 4677777777
Q ss_pred EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEcc
Q psy4257 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227 (419)
Q Consensus 148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 227 (419)
|++++|++..++.. ..+|++|++++|.+..+| .+..+++|++|++++|.++++. .. ..+|++|+++
T Consensus 158 L~l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~-~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 158 IDVDNNSLKKLPDL---------PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DL---PLSLESIVAG 223 (454)
T ss_dssp EECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCC-CC---CTTCCEEECC
T ss_pred EECCCCcCcccCCC---------cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCC-CC---cCcccEEECc
Confidence 77777776654321 135666666666666555 3555555666666666555542 11 1345555555
Q ss_pred CCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281 (419)
Q Consensus 228 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~ 281 (419)
+|.+..++. +..+++|++|++++|+++++|.. +++|+.|++++|+++++
T Consensus 224 ~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l 272 (454)
T 1jl5_A 224 NNILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDL 272 (454)
T ss_dssp SSCCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCC
T ss_pred CCcCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccccc
Confidence 555554442 44455555555555555554431 23444444444444443
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.97 E-value=4.2e-29 Score=226.87 Aligned_cols=215 Identities=23% Similarity=0.316 Sum_probs=159.6
Q ss_pred CCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEE
Q psy4257 98 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177 (419)
Q Consensus 98 L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L 177 (419)
.+.++++++.++.+|..+. ++|+.|++++|.+.++.+..|..+++|++|++++|++..++.. .+..+++|++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~-----~~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG-----IFKELKNLETL 90 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT-----TTSSCTTCCEE
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh-----hhcCCCCCCEE
Confidence 4455555555555544332 3455555555555555544555555555555555555544322 34455566666
Q ss_pred EcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257 178 KLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256 (419)
Q Consensus 178 ~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 256 (419)
++++|.+..++ ..+..+++|++|++++|.++++.+..|..+++|++|+|++|.+..++...|..+++|+.|+|++|+++
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 66666666555 34577888999999999999988888899999999999999999998888888999999999999999
Q ss_pred ccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhc
Q psy4257 257 RLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETIN 326 (419)
Q Consensus 257 ~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~ 326 (419)
.++. .|..+++|++|+|++|+|+.++...+. .+++|+.+++++|||.|+|. +.|+..|++...
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~ 235 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFD-------SLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKA 235 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHH
T ss_pred EeChhHhccCCCcCEEECCCCcCCcCCHHHhc-------cccCCCEEEecCCCeeCCCccHHHHHHHHHhhc
Confidence 9874 588899999999999999988876443 47889999999999999997 789999988754
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=5.1e-29 Score=253.28 Aligned_cols=151 Identities=23% Similarity=0.290 Sum_probs=135.6
Q ss_pred EEecccccccccccccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCC
Q psy4257 7 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI 84 (419)
Q Consensus 7 ~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l 84 (419)
..+.++-+++.+|..+. +++++|+|++|+|+.++. .|.++++|++|+|++|.|+.++ .+|.++++|++|+|++|+|
T Consensus 35 ~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 45677777888887664 489999999999999964 6999999999999999999986 5799999999999999999
Q ss_pred cccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccccccc-ChhhhcCCCCccEEEcCCCCCcccc
Q psy4257 85 TMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFG 159 (419)
Q Consensus 85 ~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 159 (419)
+++++..|.++.+|++|+|++|+++.++. .|.++++|++|++++|.+.+. .+..+..+++|++|++++|++..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 99999999999999999999999999964 689999999999999999875 4677888999999999999998654
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.1e-29 Score=237.18 Aligned_cols=227 Identities=18% Similarity=0.211 Sum_probs=152.1
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
..+++.|+|++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|++++|.+..+ +..|.++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEECC
Confidence 466777777777777777767777777777777777777776677777777777777777755 4457777777777777
Q ss_pred CCc-Ccccccccc---------CCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccc
Q psy4257 105 NNQ-ITSMNSSLS---------GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174 (419)
Q Consensus 105 ~n~-l~~i~~~l~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L 174 (419)
+|+ +..+|..+. .+++|++|++++|.+.. .+..+..+++|+.|++++|++..+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l---------------- 221 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSAL---------------- 221 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCC----------------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcC----------------
Confidence 754 335555443 37788888888888874 455677778888888877776543
Q ss_pred cEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCc
Q psy4257 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS 254 (419)
Q Consensus 175 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 254 (419)
+..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.
T Consensus 222 -------------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 222 -------------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp -------------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred -------------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 2334555666666666666666556666666666777776666655555556666677777777655
Q ss_pred ccc-cCccCCCCCCcCEEecCCCcccccc
Q psy4257 255 LTR-LDKDFHGLPVLCKADLAHNNIKAIN 282 (419)
Q Consensus 255 i~~-l~~~~~~l~~L~~L~L~~N~l~~~~ 282 (419)
+.+ +|..+..+++|+.+++..+.+..+.
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred chhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 433 6666667777777777766655544
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.97 E-value=1.5e-30 Score=241.37 Aligned_cols=252 Identities=20% Similarity=0.168 Sum_probs=199.0
Q ss_pred cccccccceeecccccCccCccccccccccceeecccccccC--chhhhc-------CCCCCCEEecCCCCCcccChhhh
Q psy4257 22 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS--LDGLLR-------GLTKLQVFNMDFNQITMVRRDEF 92 (419)
Q Consensus 22 ~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~--l~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~ 92 (419)
+....+|+.|++++|.+ .+|..+... |+.|++++|.+.. ++..+. ++++|++|++++|++.+..+..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34477899999999999 888766554 9999999999865 454444 78999999999999998767665
Q ss_pred --cCCCCCCEEEccCCcCccccccccCC-----ccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCC
Q psy4257 93 --QNLHNLDSISLQNNQITSMNSSLSGL-----TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165 (419)
Q Consensus 93 --~~~~~L~~L~L~~n~l~~i~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 165 (419)
..+++|++|++++|+++.+|..+..+ ++|++|++++|.+.+..+..|..+++|++|++++|++.+.... ...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL-ISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH-HHH
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH-HHH
Confidence 88999999999999999887777666 8999999999999998888999999999999999986542100 000
Q ss_pred CcccCcccccEEEcCCCCCcCch----hhhcCCCCCcEEEcCCCCCCCcCc-ccCCCCCCCcEEEccCCcCcccCchhcc
Q psy4257 166 NQVQGVTNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISP-DDFIGLDSLKMLDISHNLLTTLEETSKT 240 (419)
Q Consensus 166 ~~~~~~~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 240 (419)
..+..+++|++|++++|.+..++ ..+..+++|++|++++|.+.+..+ ..+..+++|++|+|++|+|+.++...+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~- 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP- 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-
Confidence 12367788999999999888554 233567889999999998888653 456667888888888888887765443
Q ss_pred CCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281 (419)
Q Consensus 241 ~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~ 281 (419)
++|++|+|++|+|+++|. +..+++|+.|++++|.|++.
T Consensus 274 --~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 688888888888888865 78888888888888887753
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=8.8e-30 Score=233.27 Aligned_cols=221 Identities=25% Similarity=0.356 Sum_probs=146.9
Q ss_pred ceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc
Q psy4257 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107 (419)
Q Consensus 29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 107 (419)
+.++++++.++.+|..+ .++|++|++++|.+..++ ..|..+++|+.|++++|.+.++.+..|.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56777777777777544 357788888888887765 467778888888888888888877788888888888888886
Q ss_pred -Cccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCc
Q psy4257 108 -ITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185 (419)
Q Consensus 108 -l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 185 (419)
+..+ +..+..+++|++|++++|.+.+..+..|..+++|++|++++|++..++.. .+..+++|+.|++++|.++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-----TFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-----HhccCCCccEEECCCCccc
Confidence 7776 56677888888888888888887777788888888888888877655432 2344444555555555444
Q ss_pred Cchh-hhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257 186 NLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256 (419)
Q Consensus 186 ~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 256 (419)
.++. .+..+++|++|++++|.+.++.+..|..+++|+.|++++|.+.+++...+..+++|+.|+|++|.+.
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4432 2444555555555555555555555555555555555555555555444555555555555555444
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=5.6e-30 Score=238.13 Aligned_cols=228 Identities=18% Similarity=0.220 Sum_probs=133.5
Q ss_pred hcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccE
Q psy4257 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147 (419)
Q Consensus 68 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 147 (419)
+..+++|+.|++++|++.++.+..|.++++|++|+|++|.++.++. +..+++|++|++++|.+.+.. ..++|+.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 3344455555555555555555555555555555555555554432 455555555555555554432 1245555
Q ss_pred EEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCC-CCCCCcEEE
Q psy4257 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLD 225 (419)
Q Consensus 148 L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~ 225 (419)
|++++|++..++. ..+++|++|++++|.+..++ ..+..+++|++|++++|.+.++.+..+. .+++|++|+
T Consensus 104 L~l~~n~l~~~~~--------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 104 LHAANNNISRVSC--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp EECCSSCCSEEEE--------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred EECCCCccCCcCc--------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 5555555554432 12345666666666666553 2455566777777777777666555543 566777777
Q ss_pred ccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEec
Q psy4257 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE 305 (419)
Q Consensus 226 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~ 305 (419)
|++|.++.++.. ..+++|++|+|++|+|+.++..+..+++|+.|++++|+|+.++.. +..+++++.++++
T Consensus 176 L~~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~--------~~~l~~L~~L~l~ 245 (317)
T 3o53_A 176 LQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA--------LRFSQNLEHFDLR 245 (317)
T ss_dssp CTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT--------CCCCTTCCEEECT
T ss_pred CCCCcCcccccc--cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhH--------hhcCCCCCEEEcc
Confidence 777777666432 236677777777777777766666777777777777777766543 2235677777777
Q ss_pred CCccccccchHHHH
Q psy4257 306 GNPVLCDDSMRAVI 319 (419)
Q Consensus 306 ~Np~~c~~~~~~~~ 319 (419)
+|++.|++...|+.
T Consensus 246 ~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 246 GNGFHCGTLRDFFS 259 (317)
T ss_dssp TCCCBHHHHHHHHH
T ss_pred CCCccCcCHHHHHh
Confidence 77777766544443
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.2e-29 Score=236.00 Aligned_cols=255 Identities=18% Similarity=0.183 Sum_probs=187.6
Q ss_pred ccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 27 KLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+++.++++++.+..++. .+..+++|++|++++|.+..++ ..|..+++|+.|++++|++.++.+ |..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666654433 3455667777777777777764 567777888888888887776654 7777788888888
Q ss_pred CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
+|+++.++. .++|++|++++|.+.+..+. .+++|+.|++++|++..+... .+..+++|++|++++|.+
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~-----~~~~l~~L~~L~Ls~N~l 156 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL-----DEGCRSRVQYLDLKLNEI 156 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB-----CTGGGSSEEEEECTTSCC
T ss_pred CCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch-----hhhccCCCCEEECCCCCC
Confidence 887776642 36788888888887776433 356788888888887766433 456677888888888888
Q ss_pred cCch-hhh-cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccC
Q psy4257 185 ENLD-GAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF 262 (419)
Q Consensus 185 ~~~~-~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~ 262 (419)
..++ ..+ ..+++|++|++++|.++++.. ...+++|++|+|++|++++++.. +..+++|+.|+|++|+|+.+|..+
T Consensus 157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp CEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred CcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhHh
Confidence 7654 334 468899999999999988732 33588999999999999998776 777899999999999999999889
Q ss_pred CCCCCcCEEecCCCccc-ccchhhhhhcccceecCCcceeEEec
Q psy4257 263 HGLPVLCKADLAHNNIK-AINIQLALKTQCQIFGLNSTLRIYLE 305 (419)
Q Consensus 263 ~~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~~~~~~~l~~l~l~ 305 (419)
..+++|+.|++++|.+. ......+ ..++.++.+++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~-------~~~~~L~~l~l~ 270 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFF-------SKNQRVQTVAKQ 270 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHH-------HTCHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHH-------hccccceEEECC
Confidence 99999999999999998 3332222 235556666665
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=4.6e-29 Score=232.85 Aligned_cols=232 Identities=19% Similarity=0.202 Sum_probs=158.7
Q ss_pred cccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257 49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 128 (419)
Q Consensus 49 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~ 128 (419)
.+++.|++++|.+..+|..+..+++|++|++++|.+..+ +..|.++++|++|+|++|.+..+|..+..+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 345555555555555544444455555555555555422 2344445555555555555554444444555555555555
Q ss_pred ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCC
Q psy4257 129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 208 (419)
Q Consensus 129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~ 208 (419)
|.+.+..+..+.. .. ....+..+++|++|++++|.++.+|..+..+++|++|++++|.+.
T Consensus 160 n~~~~~~p~~~~~------~~--------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 160 CPELTELPEPLAS------TD--------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp ETTCCCCCSCSEE------EC---------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCccccChhHhh------cc--------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC
Confidence 4443333322211 00 011245688899999999999989988999999999999999999
Q ss_pred CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCCCcCEEecCCCcccc-cchhhh
Q psy4257 209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLPVLCKADLAHNNIKA-INIQLA 286 (419)
Q Consensus 209 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~~L~~L~L~~N~l~~-~~~~~~ 286 (419)
++ +..|..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++|++.+ +|..
T Consensus 220 ~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-- 296 (328)
T 4fcg_A 220 AL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-- 296 (328)
T ss_dssp CC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG--
T ss_pred cC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH--
Confidence 87 4568999999999999999988888889999999999999986655 78889999999999999988664 5543
Q ss_pred hhcccceecCCcceeEEecCCccc
Q psy4257 287 LKTQCQIFGLNSTLRIYLEGNPVL 310 (419)
Q Consensus 287 ~~~~~~~~~~~~l~~l~l~~Np~~ 310 (419)
+..+++++.+++..|.+.
T Consensus 297 ------l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 ------IAQLPANCIILVPPHLQA 314 (328)
T ss_dssp ------GGGSCTTCEEECCGGGSC
T ss_pred ------HhhccCceEEeCCHHHHH
Confidence 334888999998877653
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=8.9e-30 Score=236.24 Aligned_cols=245 Identities=20% Similarity=0.217 Sum_probs=202.0
Q ss_pred CCCcEEecccccccccccccccccccceeecccccCcc--Cccccc-------cccccceeecccccccC-chhhh--cC
Q psy4257 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA--LPSDIQ-------LFSQLGSLYANNNRITS-LDGLL--RG 70 (419)
Q Consensus 3 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~--i~~~~~-------~~~~L~~L~l~~n~i~~-l~~~~--~~ 70 (419)
++|++|++++|.+ .+|..+... |+.|+|++|.+.. ++..+. .+++|++|++++|.+.+ +|..+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4688899999999 777666554 9999999999964 555554 68999999999999985 66554 88
Q ss_pred CCCCCEEecCCCCCcccChhhhcCC-----CCCCEEEccCCcCcccc-ccccCCccCcEEeccccccccc--Chhhh--c
Q psy4257 71 LTKLQVFNMDFNQITMVRRDEFQNL-----HNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF--LLDDI--R 140 (419)
Q Consensus 71 l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~--~~~~~--~ 140 (419)
+++|++|++++|++.++ +..|..+ ++|++|++++|++..++ ..+..+++|++|++++|.+.+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999999998 6677766 89999999999999886 7899999999999999997764 22333 7
Q ss_pred CCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch--hhhcCCCCCcEEEcCCCCCCCcCcccCCCC
Q psy4257 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGL 218 (419)
Q Consensus 141 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 218 (419)
.+++|++|++++|++..++.. ....+..+++|++|++++|.+...+ ..+..+++|++|++++|.++.+ |..+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGV--CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHH--HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred cCCCCCEEECCCCcCcchHHH--HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 899999999999999854321 1123456789999999999998765 4456689999999999999977 44554
Q ss_pred CCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258 (419)
Q Consensus 219 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l 258 (419)
++|++|+|++|+|++++. +..+++|++|+|++|.|++.
T Consensus 274 ~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 899999999999999954 78899999999999998764
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=4e-28 Score=238.43 Aligned_cols=218 Identities=19% Similarity=0.254 Sum_probs=106.4
Q ss_pred ccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257 50 QLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 128 (419)
Q Consensus 50 ~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~ 128 (419)
+|+.|+|++|.+..++ ..|..+++|+.|+|++|.+.++.+ |..+++|++|+|++|.|+.++.. ++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcC
Confidence 4555555555555542 345555555555555555554433 45555555555555555444321 4455555555
Q ss_pred ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCC
Q psy4257 129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 208 (419)
Q Consensus 129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~ 208 (419)
|.+.+..+. .+++|+.|++++|.+..+. +..+..+++|+.|+|++|.++
T Consensus 109 N~l~~~~~~---~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 109 NNISRVSCS---RGQGKKNIYLANNKITMLR----------------------------DLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp SCCCCEEEC---CCSSCEEEECCSSCCCSGG----------------------------GBCGGGGSSEEEEECTTSCCC
T ss_pred CcCCCCCcc---ccCCCCEEECCCCCCCCCC----------------------------chhhcCCCCCCEEECCCCCCC
Confidence 555443322 2344455555555444432 223444555555555555555
Q ss_pred CcCcccCC-CCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhh
Q psy4257 209 TISPDDFI-GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL 287 (419)
Q Consensus 209 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (419)
++.+..|. .+++|+.|+|++|.+++++.. ..+++|+.|+|++|.|++++..+..+++|+.|+|++|.|++++..
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--- 232 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA--- 232 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT---
T ss_pred CcChHHHhhhCCcccEEecCCCcccccccc--ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh---
Confidence 54444443 445555555555555544322 224555555555555555554455555555555555555554432
Q ss_pred hcccceecCCcceeEEecCCccccccc
Q psy4257 288 KTQCQIFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 288 ~~~~~~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
+..++++..+++++|++.|++.
T Consensus 233 -----l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 233 -----LRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp -----CCCCTTCCEEECTTCCBCHHHH
T ss_pred -----hccCCCCCEEEcCCCCCcCcch
Confidence 1124455555555555555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-28 Score=239.67 Aligned_cols=243 Identities=19% Similarity=0.216 Sum_probs=191.0
Q ss_pred ccccceeecccccCccCc-cccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEc
Q psy4257 25 LSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 103 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~-~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 103 (419)
+++|+.|+|++|.++.++ ..|..+++|++|+|++|.+.+++. +..+++|+.|++++|.|.++++ .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 459999999999999875 579999999999999999998765 8999999999999999988753 389999999
Q ss_pred cCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257 104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183 (419)
Q Consensus 104 ~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (419)
++|.|..++. ..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+..+
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----------------------- 161 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----------------------- 161 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-----------------------
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-----------------------
Confidence 9999998854 346899999999999999888888889999999999998876532
Q ss_pred CcCchhhhc-CCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccC
Q psy4257 184 IENLDGALM-GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF 262 (419)
Q Consensus 184 l~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~ 262 (419)
..+. .+++|+.|+|++|.++++.+ +..+++|+.|+|++|.++++++. +..+++|+.|+|++|.|+++|..+
T Consensus 162 -----~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 162 -----AELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp -----GGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTC
T ss_pred -----HHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhh
Confidence 2332 56777777777777776622 33477788888888888877665 666778888888888888888777
Q ss_pred CCCCCcCEEecCCCccc--ccchhhhhhcccceecCCcceeEEec-------CCccccccc
Q psy4257 263 HGLPVLCKADLAHNNIK--AINIQLALKTQCQIFGLNSTLRIYLE-------GNPVLCDDS 314 (419)
Q Consensus 263 ~~l~~L~~L~L~~N~l~--~~~~~~~~~~~~~~~~~~~l~~l~l~-------~Np~~c~~~ 314 (419)
..+++|+.|++++|.+. .++.. +..++.+..+++. +|++.|.|.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~--------~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDF--------FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHH--------HTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred ccCCCCCEEEcCCCCCcCcchHHH--------HHhCCCCcEEeccccccccCCCcccccCC
Confidence 78888888888888877 22221 1124455555554 777777764
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.1e-29 Score=246.52 Aligned_cols=14 Identities=21% Similarity=0.107 Sum_probs=7.5
Q ss_pred CCcceeEEecCCcc
Q psy4257 296 LNSTLRIYLEGNPV 309 (419)
Q Consensus 296 ~~~l~~l~l~~Np~ 309 (419)
+++|+++++++|++
T Consensus 397 ~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 397 NHSLRELDLSNNCL 410 (461)
T ss_dssp CCCCCEEECCSSSC
T ss_pred CCCccEEECCCCCC
Confidence 45555555555554
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=2.2e-29 Score=246.49 Aligned_cols=318 Identities=18% Similarity=0.155 Sum_probs=203.8
Q ss_pred CCCCcEEeccccccc-----ccccccccccccceeecccccCccC-ccc-ccccc----ccceeecccccccC-----ch
Q psy4257 2 LTDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLEAL-PSD-IQLFS----QLGSLYANNNRITS-----LD 65 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~i-~~~-~~~~~----~L~~L~l~~n~i~~-----l~ 65 (419)
+++|++|++++|.++ .++..+..+++|+.|+|++|.+... +.. +..+. +|++|++++|.+.. ++
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 467888888888877 3345566678888888888887742 222 23344 68888888888873 46
Q ss_pred hhhcCCCCCCEEecCCCCCcccChhhhc-----CCCCCCEEEccCCcCcc-----ccccccCCccCcEEecccccccccC
Q psy4257 66 GLLRGLTKLQVFNMDFNQITMVRRDEFQ-----NLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFL 135 (419)
Q Consensus 66 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~~~ 135 (419)
..+..+++|+.|++++|.+.......+. ...+|++|++++|+++. ++..+..+++|++|++++|.+.+..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 6778888888888888887765444332 24578888888888774 3455666778888888888876644
Q ss_pred hhhhc-----CCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch------hhhcCCCCCcEEEcCC
Q psy4257 136 LDDIR-----GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD------GALMGIHGLSRLDLSH 204 (419)
Q Consensus 136 ~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~------~~~~~l~~L~~L~Ls~ 204 (419)
...+. ..++|+.|++++|.+...... .....+..+++|++|++++|.+.... ..+..+++|++|++++
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 43332 255788888888877653110 01113445677788888888776431 2223467788888888
Q ss_pred CCCCCcC----cccCCCCCCCcEEEccCCcCcccCchhcc-----CCCCCceEeCcCCccccc-----CccCCCCCCcCE
Q psy4257 205 NKLRTIS----PDDFIGLDSLKMLDISHNLLTTLEETSKT-----FLPALEELFVSHNSLTRL-----DKDFHGLPVLCK 270 (419)
Q Consensus 205 n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~l-----~~~~~~l~~L~~ 270 (419)
|.++... +..+..+++|++|+|++|.+.+.....+. ..++|++|++++|.++.. +..+..+++|+.
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 8776631 44455577788888888877654332222 235778888888877653 344566677888
Q ss_pred EecCCCcccccchhhhhhccccee-cCCcceeEEecCCccccccchHHHHHHHHh
Q psy4257 271 ADLAHNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCDDSMRAVIDAMET 324 (419)
Q Consensus 271 L~L~~N~l~~~~~~~~~~~~~~~~-~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~ 324 (419)
|++++|.++......+... +. ..+.|++|++++|.+. +.....+..++..
T Consensus 346 L~Ls~n~i~~~~~~~l~~~---l~~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQG---LGQPGSVLRVLWLADCDVS-DSSCSSLAATLLA 396 (461)
T ss_dssp EECCSSBCHHHHHHHHHHH---HTSTTCCCCEEECTTSCCC-HHHHHHHHHHHHH
T ss_pred EEccCCccccccHHHHHHH---HcCCCCceEEEECCCCCCC-hhhHHHHHHHHHh
Confidence 8888887776544433211 11 1456777888777653 2233445555544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.95 E-value=1.5e-26 Score=210.66 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=114.8
Q ss_pred ccceeecccccccCchh-hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecc
Q psy4257 50 QLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLS 127 (419)
Q Consensus 50 ~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~ 127 (419)
+|++|++++|.+..++. .|.++++|++|++++|++.++.+..|.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444444432 3444444555555555444444444444445555555555444442 334444455555555
Q ss_pred cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCc----EEEc
Q psy4257 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLS----RLDL 202 (419)
Q Consensus 128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~----~L~L 202 (419)
+|.+.+.....+..+++|++|++++|++..+. ....+..+++|++|++++|.+..++ ..+..+.+|+ .|++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceec----CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 55544444334444555555555555544321 0113444455555555555555443 3344444444 7888
Q ss_pred CCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257 203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 203 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 257 (419)
++|.+.++.+..+.. .+|+.|+|++|++++++...|..+++|+.|+|++|.+..
T Consensus 185 s~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 185 SLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 888888886666554 478888888888888888778888888899998888774
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.94 E-value=4.5e-26 Score=208.75 Aligned_cols=204 Identities=25% Similarity=0.297 Sum_probs=139.8
Q ss_pred cccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEE
Q psy4257 45 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124 (419)
Q Consensus 45 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L 124 (419)
++.++++++++++++.++.+|..+. ++++.|++++|.+.++.+..|.++++|++|+|++|.|+.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3444555555555555555553332 4566666666666666666666666666666666666665432 455566666
Q ss_pred ecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCC
Q psy4257 125 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 204 (419)
Q Consensus 125 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~ 204 (419)
++++|.+..+ +..+..+++|+.|++++|++..++ +..|..+++|++|+|++
T Consensus 83 ~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~----------------------------~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLP----------------------------LGALRGLGELQELYLKG 133 (290)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCC----------------------------SSTTTTCTTCCEEECTT
T ss_pred ECCCCcCCcC-chhhccCCCCCEEECCCCcCcccC----------------------------HHHHcCCCCCCEEECCC
Confidence 6666655542 234444555555555555544332 13466677888888888
Q ss_pred CCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccc
Q psy4257 205 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKA 280 (419)
Q Consensus 205 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~ 280 (419)
|+++++.+..|..+++|+.|+|++|+++.++...|..+++|+.|+|++|+|+.+|..+..+.+|+.|+|++|.+..
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 8888887777888888888888888888888888888889999999999999888888888899999999998864
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.94 E-value=9.5e-26 Score=202.42 Aligned_cols=194 Identities=23% Similarity=0.292 Sum_probs=151.6
Q ss_pred CCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccE
Q psy4257 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176 (419)
Q Consensus 97 ~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~ 176 (419)
..++++++++.++.+|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+..+.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------- 75 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS----------------- 75 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-----------------
Confidence 45677777777777776554 57777788777777777667777777777777777766543
Q ss_pred EEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256 (419)
Q Consensus 177 L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 256 (419)
+..+..+++|++|+|++|.++++.+..|..+++|++|+|++|+|+.++...|..+++|++|+|++|+|+
T Consensus 76 -----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 76 -----------AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp -----------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 234566777888888888888777777888888888888888888888777778888888888888888
Q ss_pred ccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccc-cchHHHHHHHHhhcC
Q psy4257 257 RLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD-DSMRAVIDAMETINN 327 (419)
Q Consensus 257 ~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~-~~~~~~~~~l~~~~~ 327 (419)
.++. .|..+++|++|+|++|+|+.++...+ ..+++|+.|++++|+|.|+ |.+.|+..|++....
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~ 210 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF-------DRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSN 210 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-------TTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGG
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCHHHH-------hCCCCCCEEEeeCCceeCCccccHHHHHHHHhccc
Confidence 8875 57888888888888888888876543 2478899999999999999 999999999987443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-25 Score=203.43 Aligned_cols=199 Identities=21% Similarity=0.336 Sum_probs=107.0
Q ss_pred cceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccccc-ccCCccCcEEecccc
Q psy4257 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHN 129 (419)
Q Consensus 51 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~-l~~l~~L~~L~l~~n 129 (419)
++.++++++.++.+|..+. .+|+.|++++|++.++.+..|.++++|++|++++|.++.++.. |..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 3344444444444443221 3455555555555555555555555555555555555555432 344555555555555
Q ss_pred cccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCC
Q psy4257 130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRT 209 (419)
Q Consensus 130 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~ 209 (419)
.+.+..+..|..+++|++|++++|++..++. ..+..+++|++|++++|.+.+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----------------------------~~~~~l~~L~~L~Ls~n~l~~ 147 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPP----------------------------RVFDSLTKLTYLSLGYNELQS 147 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCH----------------------------HHhCcCcCCCEEECCCCcCCc
Confidence 5555544455555555555555555544321 223445555555555555555
Q ss_pred cCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCCCccc
Q psy4257 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIK 279 (419)
Q Consensus 210 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~N~l~ 279 (419)
+.+..|..+++|++|+|++|.+..++...|..+++|+.|+|++|+++.++. .|..+++|+.|+|++|.+.
T Consensus 148 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 555555555666666666666666555555556666666666666666553 3555666666666666654
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.93 E-value=3.3e-26 Score=211.63 Aligned_cols=216 Identities=20% Similarity=0.334 Sum_probs=143.9
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+.++..+.+..+.+..+ ..+..+++|++|++++|.+..++ .+..+++|+.|++++|++.++.+ +..+++|++|+++
T Consensus 18 l~~~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 18 LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS 93 (308)
T ss_dssp HHHHHHHHTTCSSTTSE-ECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred HHHHHHHHhCCCCcCce-ecHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEcc
Confidence 34455556666666654 23456778888888888888876 46778888888888888887755 7788888888888
Q ss_pred CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
+|.++.++ .+..+++|++|++++|.+.+.. .+..+++|+.|++++|++..++. +..+++|+.|++++|.+
T Consensus 94 ~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 94 GNPLKNVS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-------LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp SCCCSCCG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-------GGGCTTCCEEECCSSCC
T ss_pred CCcCCCch-hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-------ccCCCCccEEEccCCcC
Confidence 88888774 5777788888888888877643 37777777777777777765432 44555666666666666
Q ss_pred cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257 185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259 (419)
Q Consensus 185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~ 259 (419)
..++. +..+++|+.|++++|.++++.+ +..+++|++|+|++|++.++.+ +..+++|+.|+|++|.++..|
T Consensus 164 ~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 164 SDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred CCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 65554 5555666666666666655532 4555666666666666655542 455556666666666655544
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=5e-26 Score=206.73 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=146.1
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+..+..+++.++.+..+ ..+..+.+|+.|++++|.+..++. +..+++|+.|++++|.+.++ ..+..+++|++|+++
T Consensus 18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 45666777777777655 245677888888888888887764 67788888888888888876 367888888888888
Q ss_pred CCcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257 105 NNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183 (419)
Q Consensus 105 ~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (419)
+|.++.++. .+..+++|++|++++|.+.+..+..|..+++|++|++++|++..++.. .+..+++|+.|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-----VFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH-----HhccCccCCEEECCCCC
Confidence 888887754 467888888888888888887777788888888888888888765432 33444455555555555
Q ss_pred CcCchh-hhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257 184 IENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 184 l~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 257 (419)
++.++. .+..+++|++|++++|.++++.+..|..+++|+.|++++|.+.. .+++|+.|+++.|.+.+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence 544432 23445555555555555555555555555555555555554432 24455555555555543
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.93 E-value=1.4e-25 Score=207.53 Aligned_cols=212 Identities=25% Similarity=0.393 Sum_probs=119.4
Q ss_pred eeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccccccc
Q psy4257 53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132 (419)
Q Consensus 53 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~ 132 (419)
.+.+..+.+..+.. +..+++|+.|++++|.+..+. .+..+++|++|++++|.+..++. +..+++|++|++++|.+.
T Consensus 23 ~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 23 KIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HHHTTCSSTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS
T ss_pred HHHhCCCCcCceec-HHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC
Confidence 33444444444211 233455666666666665543 35556666666666666665544 555666666666666655
Q ss_pred ccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCc
Q psy4257 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212 (419)
Q Consensus 133 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 212 (419)
+. ..+..+++|+.|++++|++..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++++.+
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDVT-------PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCCG-------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCch-------hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh
Confidence 53 24555666666666666655432 24555566666666666665544 5555666666666666655533
Q ss_pred ccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccch
Q psy4257 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 213 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (419)
+..+++|+.|++++|.+++++. +..+++|++|+|++|++.+++ .+..+++|+.|++++|.++..+.
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred --hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 5556666666666666655543 445566666666666666555 25556666666666666655444
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=1.2e-25 Score=200.14 Aligned_cols=203 Identities=22% Similarity=0.356 Sum_probs=114.3
Q ss_pred CccCccccccccccceeecccccccCchh-hhcCCCCCCEEecCCCC-CcccChhhhcCCCCCCEEEccC-CcCcccc-c
Q psy4257 38 LEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQN-NQITSMN-S 113 (419)
Q Consensus 38 l~~i~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~-n~l~~i~-~ 113 (419)
++.+|. +. .+|++|++++|.++.++. .|.++++|+.|++++|+ +..+.+..|.++++|++|++++ |+++.++ .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555554 32 356666666666666543 56666666666666665 6666666666666666666666 6666664 3
Q ss_pred cccCCccCcEEecccccccccChhhhcCCCCcc---EEEcCCC-CCccccCCCCCCCcccCccccc-EEEcCCCCCcCch
Q psy4257 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR---TVDLSYN-KINKFGTRNEGKNQVQGVTNIF-ELKLQHNEIENLD 188 (419)
Q Consensus 114 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~ 188 (419)
.|..+++|++|++++|.+.+++ . |..+++|+ .|++++| ++..++.. .+..+++|+ .|++++|.+..++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-----~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVN-----AFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTT-----TTTTTBSSEEEEECCSCCCCEEC
T ss_pred HhCCCCCCCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcc-----cccchhcceeEEEcCCCCCcccC
Confidence 4566666666666666666633 2 55666666 7777776 66555432 233444444 4444444444444
Q ss_pred hhhcCCCCCcEEEcCCCC-CCCcCcccCCCC-CCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257 189 GALMGIHGLSRLDLSHNK-LRTISPDDFIGL-DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253 (419)
Q Consensus 189 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 253 (419)
.......+|+.|++++|+ ++.+.+..|.++ ++|+.|++++|+++.++.. .+++|+.|+++++
T Consensus 173 ~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 322222455556666553 555555555555 5555555555555555443 2445555555443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=1.8e-25 Score=199.15 Aligned_cols=199 Identities=19% Similarity=0.279 Sum_probs=129.5
Q ss_pred eecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc-Cccccc-cccCCccCcEEeccc-cc
Q psy4257 54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-ITSMNS-SLSGLTKLAYLYLSH-NQ 130 (419)
Q Consensus 54 L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~i~~-~l~~l~~L~~L~l~~-n~ 130 (419)
+++..+.++.+|. +. .+|+.|++++|+++++++..|.++++|++|++++|. ++.++. .|..+++|++|++++ |.
T Consensus 16 ~~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 16 FRVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TEEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred ceeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 3333334777876 33 489999999999999998889999999999999996 888864 688899999999998 89
Q ss_pred ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCC-CCCC
Q psy4257 131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN-KLRT 209 (419)
Q Consensus 131 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n-~l~~ 209 (419)
+.++.+..|.++++|+.|++++|++..++. +..+.+|+ .|++|++++| .+++
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-------~~~l~~L~--------------------~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPD-------LTKVYSTD--------------------IFFILEITDNPYMTS 145 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCSCCC-------CTTCCBCC--------------------SEEEEEEESCTTCCE
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCccccc-------cccccccc--------------------cccEEECCCCcchhh
Confidence 988887888888899999999888876532 23333333 1114444444 4444
Q ss_pred cCcccCCCCCCCc-EEEccCCcCcccCchhccCCCCCceEeCcCCc-ccccC-ccCCCC-CCcCEEecCCCcccccch
Q psy4257 210 ISPDDFIGLDSLK-MLDISHNLLTTLEETSKTFLPALEELFVSHNS-LTRLD-KDFHGL-PVLCKADLAHNNIKAINI 283 (419)
Q Consensus 210 ~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~l~-~~~~~l-~~L~~L~L~~N~l~~~~~ 283 (419)
+.+..|.++++|+ +|++++|+++.++...|.. ++|+.|+|++|+ ++.++ ..|..+ ++|+.|++++|+|+.++.
T Consensus 146 i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp ECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred cCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 4444444455555 5555555555444444443 455555555552 55443 234444 555555555555554443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.93 E-value=4.4e-26 Score=215.84 Aligned_cols=269 Identities=15% Similarity=0.146 Sum_probs=145.8
Q ss_pred eecccccCccC-ccccccccccceeecccccccCch-----hhhcCCC-CCCEEecCCCCCcccChhhhcCC-----CCC
Q psy4257 31 LVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-----GLLRGLT-KLQVFNMDFNQITMVRRDEFQNL-----HNL 98 (419)
Q Consensus 31 L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~-----~~L 98 (419)
++++.|.++.. |..+....+|++|++++|.+..++ ..+..++ +|+.|++++|++.+..+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666643 333444444677777766666543 4555666 66666666666666665555543 666
Q ss_pred CEEEccCCcCcccc-c----cccCC-ccCcEEecccccccccChhhh----cC-CCCccEEEcCCCCCccccCCCCCCCc
Q psy4257 99 DSISLQNNQITSMN-S----SLSGL-TKLAYLYLSHNQLTEFLLDDI----RG-LKRLRTVDLSYNKINKFGTRNEGKNQ 167 (419)
Q Consensus 99 ~~L~L~~n~l~~i~-~----~l~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~~~ 167 (419)
++|+|++|.++... . .+..+ ++|++|++++|.+.+.....+ .. ..+|++|++++|.+......
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------ 156 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD------ 156 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH------
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH------
Confidence 66666666666432 1 23333 566666666666655544333 22 23566666666655432110
Q ss_pred ccCcccccEEEcCCCCCcCchhhhcCCC-CCcEEEcCCCCCCCcCcccC----CCC-CCCcEEEccCCcCcccCch----
Q psy4257 168 VQGVTNIFELKLQHNEIENLDGALMGIH-GLSRLDLSHNKLRTISPDDF----IGL-DSLKMLDISHNLLTTLEET---- 237 (419)
Q Consensus 168 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~---- 237 (419)
.++..+..++ +|++|+|++|.+++..+..+ ..+ ++|++|+|++|.|.+....
T Consensus 157 ------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~ 218 (362)
T 3goz_A 157 ------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY 218 (362)
T ss_dssp ------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence 2233334443 66666666666655544322 223 3666666666666652211
Q ss_pred hccC-CCCCceEeCcCCcccccC-----ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 238 SKTF-LPALEELFVSHNSLTRLD-----KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 238 ~~~~-l~~L~~L~L~~N~i~~l~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
.+.. .++|++|+|++|.|...+ ..+..+++|+.|+|++|.+..+...........+..++.++.+++++|++..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 1222 346666666666666543 2345666677777777766655554333322334456666777777777655
Q ss_pred ccchHHHHHHHHh
Q psy4257 312 DDSMRAVIDAMET 324 (419)
Q Consensus 312 ~~~~~~~~~~l~~ 324 (419)
.. ...+..+++.
T Consensus 299 ~~-~~~~~~~l~~ 310 (362)
T 3goz_A 299 SH-SIPISNLIRE 310 (362)
T ss_dssp GG-CHHHHHHHHH
T ss_pred cc-hHHHHHHHHH
Confidence 42 2344445444
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=6.2e-25 Score=206.91 Aligned_cols=236 Identities=21% Similarity=0.293 Sum_probs=125.5
Q ss_pred ceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcc-cChhhhcCCCCCCE-EEccC
Q psy4257 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDS-ISLQN 105 (419)
Q Consensus 29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~-L~L~~ 105 (419)
+.++.+++++++||..+ ..++++|+|++|+|+.|+ .+|.++++|++|+|++|++.+ ++..+|.++++++. +.+..
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 44566666666666544 245666666666666665 346666666666666666533 44555666666554 34445
Q ss_pred CcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCC-CCCccccCCCCCCCcccCc-ccccEEEcCCC
Q psy4257 106 NQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY-NKINKFGTRNEGKNQVQGV-TNIFELKLQHN 182 (419)
Q Consensus 106 n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n 182 (419)
|++..++ ..|..+++|++|++++|.+.......+....++..|++.+ +++..++.. .+..+ ..++.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~-----~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN-----SFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT-----SSTTSBSSCEEEECCSS
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc-----chhhcchhhhhhccccc
Confidence 6666653 4556666666666666666655554554555555666643 445444322 22222 23455555555
Q ss_pred CCcCchhhhcCCCCCcEEEcC-CCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc
Q psy4257 183 EIENLDGALMGIHGLSRLDLS-HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD 261 (419)
Q Consensus 183 ~l~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~ 261 (419)
+|+.++.......+|++|+++ +|.++.+.+++|.++++|++|||++|+|+.++...|..+.+|+.+++ +.++.+| .
T Consensus 165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP-~ 241 (350)
T 4ay9_X 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP-T 241 (350)
T ss_dssp CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCC-C
T ss_pred cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCC-C
Confidence 555555444444556666664 34555555555666666666666666666655544333222222221 2344444 2
Q ss_pred CCCCCCcCEEecC
Q psy4257 262 FHGLPVLCKADLA 274 (419)
Q Consensus 262 ~~~l~~L~~L~L~ 274 (419)
+..+++|+.+++.
T Consensus 242 l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 LEKLVALMEASLT 254 (350)
T ss_dssp TTTCCSCCEEECS
T ss_pred chhCcChhhCcCC
Confidence 4444444444443
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=3.4e-25 Score=201.27 Aligned_cols=218 Identities=23% Similarity=0.292 Sum_probs=165.5
Q ss_pred ccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecc
Q psy4257 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127 (419)
Q Consensus 48 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~ 127 (419)
+.++..+++.++.+..+.. +..+++|+.|++++|.+..+. .+..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 18 ~~~l~~l~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSCTTSEEC-HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcccccccc-cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence 4456677787777776532 456788999999999988764 5888999999999999998874 78888999999999
Q ss_pred cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchh-hhcCCCCCcEEEcCCCC
Q psy4257 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNK 206 (419)
Q Consensus 128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~n~ 206 (419)
+|.+.+..+..|..+++|++|++++|++..++.. .+..+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG-----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHH-----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 9999988877788899999999999988866543 45667777777777777776653 34667777777777777
Q ss_pred CCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccc
Q psy4257 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKA 280 (419)
Q Consensus 207 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~ 280 (419)
++++.+..|..+++|++|++++|++.++++..+..+++|+.|++++|.+.. .+++|+.+++..|.+.+
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSG 236 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGG
T ss_pred cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCC
Confidence 777766667777777777777777777777667777777777777776542 34566667777766654
No 84
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.92 E-value=9.7e-25 Score=206.43 Aligned_cols=189 Identities=27% Similarity=0.383 Sum_probs=137.3
Q ss_pred CEEEccCCcCccccccccCCccCcEEecccccccccChhhhc-CCCCccEEEcCCCCCccccCCCCCCCcccCcccccEE
Q psy4257 99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR-GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177 (419)
Q Consensus 99 ~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L 177 (419)
+.+++++++++.+|..+. ..++.|+|++|.++++.+..|. .+++|+.|+|++|+|..++.
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~----------------- 81 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS----------------- 81 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-----------------
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-----------------
Confidence 466666777766665443 3466677777776666555555 66666666666666654432
Q ss_pred EcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 178 ~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 257 (419)
..|..+++|++|+|++|+|+.+.+..|.++++|++|+|++|+|..+.+..|..+++|+.|+|++|+|+.
T Consensus 82 -----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 150 (361)
T 2xot_A 82 -----------EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150 (361)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred -----------hhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe
Confidence 345667778888888888877777778888888888888888888877778888888888888888888
Q ss_pred cCcc-C---CCCCCcCEEecCCCcccccchhhhhhcccceecCCc--ceeEEecCCccccccchHHH-HHHHHh
Q psy4257 258 LDKD-F---HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNS--TLRIYLEGNPVLCDDSMRAV-IDAMET 324 (419)
Q Consensus 258 l~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~--l~~l~l~~Np~~c~~~~~~~-~~~l~~ 324 (419)
++.. | ..+++|+.|+|++|+|+.++...+.. ++. ++.|++.+|||.|+|.+.|+ ..|+..
T Consensus 151 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-------l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~ 217 (361)
T 2xot_A 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK-------LPAWVKNGLYLHNNPLECDCKLYQLFSHWQYR 217 (361)
T ss_dssp CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH-------SCHHHHTTEECCSSCEECCHHHHHHHHHHHHT
T ss_pred eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh-------ccHhhcceEEecCCCccCCcCcHHHHHHHHHh
Confidence 8754 3 56889999999999999888765432 454 47799999999999999986 567754
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=201.77 Aligned_cols=227 Identities=20% Similarity=0.151 Sum_probs=175.8
Q ss_pred cccceeecccccccC--chh--hhcCCCCCCEEecCCCCCcccChhhh--cCCCCCCEEEccCCcCccc-c----ccccC
Q psy4257 49 SQLGSLYANNNRITS--LDG--LLRGLTKLQVFNMDFNQITMVRRDEF--QNLHNLDSISLQNNQITSM-N----SSLSG 117 (419)
Q Consensus 49 ~~L~~L~l~~n~i~~--l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~l~~i-~----~~l~~ 117 (419)
..++.|.+.++.+.. +.. .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+... + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346777777777653 111 12234679999999999998888777 8899999999999998852 1 34457
Q ss_pred CccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhh----hcC
Q psy4257 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGA----LMG 193 (419)
Q Consensus 118 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~ 193 (419)
+++|++|++++|.+.+..+..|..+++|++|++++|++...... .....+..+++|++|++++|.++.++.. +..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL-MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH-HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh-hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 88999999999999988888899999999999999987542100 0011345678899999999999877652 467
Q ss_pred CCCCcEEEcCCCCCCCcCcccCCCC---CCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCE
Q psy4257 194 IHGLSRLDLSHNKLRTISPDDFIGL---DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270 (419)
Q Consensus 194 l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~ 270 (419)
+++|++|+|++|.+.++.|..+..+ ++|++|+|++|+|+.++... .++|+.|+|++|+|+++|. +..+++|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 7899999999999988877666665 68999999999998876544 3688999999999888864 677888888
Q ss_pred EecCCCcccc
Q psy4257 271 ADLAHNNIKA 280 (419)
Q Consensus 271 L~L~~N~l~~ 280 (419)
|+|++|+|+.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 8888888764
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=6.8e-25 Score=206.67 Aligned_cols=243 Identities=18% Similarity=0.216 Sum_probs=197.7
Q ss_pred ceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCc-ccc-ccccCCccCcE-Eeccc
Q psy4257 52 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMN-SSLSGLTKLAY-LYLSH 128 (419)
Q Consensus 52 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~i~-~~l~~l~~L~~-L~l~~ 128 (419)
+++++++++++.||..+ .++++.|+|++|+|+.+++++|.++++|++|+|++|++. .++ ..|.+++++.+ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 67889999999999655 368999999999999999999999999999999999985 465 46788888775 66677
Q ss_pred ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCC-CCCcCchh-hhcCCC-CCcEEEcCCC
Q psy4257 129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-NEIENLDG-ALMGIH-GLSRLDLSHN 205 (419)
Q Consensus 129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~-~~~~l~-~L~~L~Ls~n 205 (419)
|.+..+.+..|..+++|++|++++|++..++.. .+....++..+++.+ +.+..++. .|..+. .++.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-----~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-----HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-----TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred CcccccCchhhhhccccccccccccccccCCch-----hhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 999999899999999999999999999877643 344556677888855 67887763 455554 6899999999
Q ss_pred CCCCcCcccCCCCCCCcEEEcc-CCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCC-Ccccccch
Q psy4257 206 KLRTISPDDFIGLDSLKMLDIS-HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH-NNIKAINI 283 (419)
Q Consensus 206 ~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~-N~l~~~~~ 283 (419)
+|+.+.+..|. ..+|+.|+++ +|.++.++...|..+++|++|+|++|+|+.+|.. .+.+|+.|.+.+ +.++.++.
T Consensus 165 ~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 165 GIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred cccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 99999777765 4689999997 5789999999999999999999999999999853 345666666544 45777763
Q ss_pred hhhhhcccceecCCcceeEEecCCccccccc
Q psy4257 284 QLALKTQCQIFGLNSTLRIYLEGNPVLCDDS 314 (419)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 314 (419)
+..+++|+.+++. +++.|.|.
T Consensus 242 ---------l~~l~~L~~l~l~-~~~~c~~~ 262 (350)
T 4ay9_X 242 ---------LEKLVALMEASLT-YPSHCCAF 262 (350)
T ss_dssp ---------TTTCCSCCEEECS-CHHHHHHH
T ss_pred ---------chhCcChhhCcCC-CCccccch
Confidence 2347889999884 78888653
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.92 E-value=8.1e-26 Score=216.00 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=76.8
Q ss_pred CcccccEEEcCCCCCcC------chhhhcCCCCCcEEEcCCCCCC----CcCcccCCCCCCCcEEEccCCcCcccC----
Q psy4257 170 GVTNIFELKLQHNEIEN------LDGALMGIHGLSRLDLSHNKLR----TISPDDFIGLDSLKMLDISHNLLTTLE---- 235 (419)
Q Consensus 170 ~~~~L~~L~l~~n~l~~------~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~---- 235 (419)
.+++|+.|++++|.+.. ++..+..+++|++|+|++|.++ ...+..+..+++|++|+|++|.+.+..
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 34455555555555541 1225566777888888887774 223556677778888888888877652
Q ss_pred chhc--cCCCCCceEeCcCCcccc-----cCccC-CCCCCcCEEecCCCcccccch
Q psy4257 236 ETSK--TFLPALEELFVSHNSLTR-----LDKDF-HGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 236 ~~~~--~~l~~L~~L~L~~N~i~~-----l~~~~-~~l~~L~~L~L~~N~l~~~~~ 283 (419)
+..+ ..+++|+.|+|++|.|.. ++..+ ..+++|++|++++|.++....
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 2233 337788888888888887 66655 557888899999998887663
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=3.7e-25 Score=211.43 Aligned_cols=263 Identities=17% Similarity=0.172 Sum_probs=165.3
Q ss_pred ecccccCccCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCc---ccChhh-------hcCCC
Q psy4257 32 VIEQNQLEALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQIT---MVRRDE-------FQNLH 96 (419)
Q Consensus 32 ~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~---~~~~~~-------~~~~~ 96 (419)
.+....+..++..+..+++|++|+|++|.|.. +...+..+++|+.|+|++|.+. +..+.. |..++
T Consensus 15 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~ 94 (386)
T 2ca6_A 15 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP 94 (386)
T ss_dssp SCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred CCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCC
Confidence 33333444455555556666666666665554 2233455666666666664332 222222 24555
Q ss_pred CCCEEEccCCcCcc-----ccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCc
Q psy4257 97 NLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171 (419)
Q Consensus 97 ~L~~L~L~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 171 (419)
+|++|+|++|.+.. ++..+..+++|++|+|++|.+....+..+... +..+
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~-------------------------l~~l 149 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA-------------------------LQEL 149 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH-------------------------HHHH
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH-------------------------HHHH
Confidence 55555555555553 34444555555555555555543222222111 1111
Q ss_pred ---------ccccEEEcCCCCCc--Cch---hhhcCCCCCcEEEcCCCCCCC-----cCcccCCCCCCCcEEEccCCcCc
Q psy4257 172 ---------TNIFELKLQHNEIE--NLD---GALMGIHGLSRLDLSHNKLRT-----ISPDDFIGLDSLKMLDISHNLLT 232 (419)
Q Consensus 172 ---------~~L~~L~l~~n~l~--~~~---~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~ 232 (419)
++|++|++++|.+. .++ ..+..+++|++|+|++|.++. +.+..+..+++|++|+|++|.++
T Consensus 150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 44555555555554 233 456788999999999999973 33447788999999999999995
Q ss_pred ----ccCchhccCCCCCceEeCcCCccccc-----CccC--CCCCCcCEEecCCCcccc-----cchhhhhhcccceecC
Q psy4257 233 ----TLEETSKTFLPALEELFVSHNSLTRL-----DKDF--HGLPVLCKADLAHNNIKA-----INIQLALKTQCQIFGL 296 (419)
Q Consensus 233 ----~~~~~~~~~l~~L~~L~L~~N~i~~l-----~~~~--~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~~~~~~~ 296 (419)
...+..+..+++|+.|+|++|.|... +..+ ..+++|+.|+|++|.|+. ++..+. ..+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~-------~~l 302 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID-------EKM 302 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH-------HHC
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH-------hcC
Confidence 22334677899999999999999874 4555 448999999999999998 444332 236
Q ss_pred CcceeEEecCCccccccc-hHHHHHHHHhhc
Q psy4257 297 NSTLRIYLEGNPVLCDDS-MRAVIDAMETIN 326 (419)
Q Consensus 297 ~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~ 326 (419)
++|+.|++++|++.+... +.++...+....
T Consensus 303 ~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 303 PDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp TTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred CCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 899999999999987765 566666666643
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.91 E-value=7e-24 Score=186.12 Aligned_cols=164 Identities=27% Similarity=0.363 Sum_probs=140.2
Q ss_pred cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchh-hhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEE
Q psy4257 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG-ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224 (419)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 224 (419)
+.++++++.+..++.. ...+|+.|++++|.+..++. .|..+++|++|+|++|.++++.+..|.++++|++|
T Consensus 14 ~~v~c~~~~l~~iP~~--------l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN--------LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp TEEECTTSCCSSCCSS--------CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred CEEEcCCCCcCcCCCc--------cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 4667777777665432 12567778888888777764 67888999999999999999989999999999999
Q ss_pred EccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEE
Q psy4257 225 DISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIY 303 (419)
Q Consensus 225 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~ 303 (419)
+|++|.|+.++...|..+++|+.|+|++|+|+.++ ..|..+++|+.|+|++|+|+.++...+. .+++++.++
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~ 158 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS-------PLRAIQTMH 158 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh-------CCCCCCEEE
Confidence 99999999999888899999999999999999985 6788999999999999999998876433 478899999
Q ss_pred ecCCccccccchHHHHHHHHh
Q psy4257 304 LEGNPVLCDDSMRAVIDAMET 324 (419)
Q Consensus 304 l~~Np~~c~~~~~~~~~~l~~ 324 (419)
+++|||.|+|.+.|+..|++.
T Consensus 159 L~~N~~~c~c~l~~l~~~l~~ 179 (220)
T 2v9t_B 159 LAQNPFICDCHLKWLADYLHT 179 (220)
T ss_dssp CCSSCEECSGGGHHHHHHHHH
T ss_pred eCCCCcCCCCccHHHHHHHHh
Confidence 999999999999999999987
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=4.4e-25 Score=208.98 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=166.7
Q ss_pred EEeccccccccc-ccccccccccceeecccccCccCc-----ccccccc-ccceeecccccccCc-hhhhcC----C-CC
Q psy4257 7 WLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALP-----SDIQLFS-QLGSLYANNNRITSL-DGLLRG----L-TK 73 (419)
Q Consensus 7 ~L~l~~n~l~~l-~~~~~~~~~L~~L~L~~n~l~~i~-----~~~~~~~-~L~~L~l~~n~i~~l-~~~~~~----l-~~ 73 (419)
.+.++.|.++.. +..+....+|+.|+|++|.++.++ ..+..++ +|++|+|++|.|... +..+.. . ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467889998854 444444566999999999999775 4577888 899999999999975 333444 3 89
Q ss_pred CCEEecCCCCCcccChhhhc----CC-CCCCEEEccCCcCccccc-----cccC-CccCcEEecccccccccChh----h
Q psy4257 74 LQVFNMDFNQITMVRRDEFQ----NL-HNLDSISLQNNQITSMNS-----SLSG-LTKLAYLYLSHNQLTEFLLD----D 138 (419)
Q Consensus 74 L~~L~l~~n~l~~~~~~~~~----~~-~~L~~L~L~~n~l~~i~~-----~l~~-l~~L~~L~l~~n~l~~~~~~----~ 138 (419)
|+.|++++|++.+..+..+. .+ ++|++|++++|.++..+. .+.. ..+|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999988877544 44 899999999999987642 2444 36999999999999865443 3
Q ss_pred hcCCC-CccEEEcCCCCCccccCCCCCCCcccCc-ccccEEEcCCCCCcC-----chhhhcC-CCCCcEEEcCCCCCCCc
Q psy4257 139 IRGLK-RLRTVDLSYNKINKFGTRNEGKNQVQGV-TNIFELKLQHNEIEN-----LDGALMG-IHGLSRLDLSHNKLRTI 210 (419)
Q Consensus 139 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~-----~~~~~~~-l~~L~~L~Ls~n~l~~~ 210 (419)
+..++ +|++|++++|++....... ....+... ++|++|+|++|.+.. ++..+.. .++|++|+|++|.++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAE-LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHH-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHH-HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 45555 8999999999887653210 00112222 355566666665554 3333333 23555555555555544
Q ss_pred Cc----ccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCccccc
Q psy4257 211 SP----DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281 (419)
Q Consensus 211 ~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~ 281 (419)
.+ ..+..+++|++|+|++|.+..+.... +..+...+..+++|+.||+++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~----------------~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQ----------------CKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHH----------------HHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHH----------------HHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 22333444555555555433332211 112223455666677777777776654
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.91 E-value=4.5e-23 Score=182.18 Aligned_cols=169 Identities=28% Similarity=0.301 Sum_probs=145.1
Q ss_pred ccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcE
Q psy4257 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223 (419)
Q Consensus 145 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 223 (419)
.+.++.+++++..++.. ..++|+.|+|++|.+..+ +..+..+++|++|+|++|.|..+.+..|..+++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~--------~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG--------IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92 (229)
T ss_dssp TTEEECTTSCCSSCCSC--------CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEeEccCCCcCccCCC--------CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCE
Confidence 45677777777666532 126778888888888776 466788999999999999999998888999999999
Q ss_pred EEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEE
Q psy4257 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIY 303 (419)
Q Consensus 224 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~ 303 (419)
|+|++|+|+.++...|..+++|++|+|++|+|+.+|..+..+++|+.|+|++|+|+.++...+ ..+++|+.|+
T Consensus 93 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~ 165 (229)
T 3e6j_A 93 LDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF-------DRLSSLTHAY 165 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTT-------TTCTTCCEEE
T ss_pred EECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHH-------hCCCCCCEEE
Confidence 999999999999888999999999999999999999999999999999999999999887543 3478999999
Q ss_pred ecCCccccccc-hHHHHHHHHhhcCC
Q psy4257 304 LEGNPVLCDDS-MRAVIDAMETINNN 328 (419)
Q Consensus 304 l~~Np~~c~~~-~~~~~~~l~~~~~~ 328 (419)
+.+|||.|+|. +.|+..|+......
T Consensus 166 l~~N~~~c~c~~~~~l~~~~~~~~~~ 191 (229)
T 3e6j_A 166 LFGNPWDCECRDIMYLRNWVADHTSI 191 (229)
T ss_dssp CTTSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred eeCCCccCCcchhHHHHHHHHhCccc
Confidence 99999999995 99999999874433
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.91 E-value=1.9e-23 Score=183.38 Aligned_cols=177 Identities=24% Similarity=0.323 Sum_probs=143.4
Q ss_pred cEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch--hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcE
Q psy4257 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223 (419)
Q Consensus 146 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 223 (419)
+.+++++|.+..++.. ....+++|++++|.+..++ ..+..+++|++|+|++|.|+++.+..|.++++|++
T Consensus 14 ~~l~~s~n~l~~iP~~--------~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH--------IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp TEEECCSSCCSSCCSC--------CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CEeEeCCCCcccCccC--------CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 4666777766665432 1234567777777777663 34788999999999999999998889999999999
Q ss_pred EEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeE
Q psy4257 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRI 302 (419)
Q Consensus 224 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l 302 (419)
|+|++|.++.++...|..+++|++|+|++|+|..++ ..|..+++|+.|+|++|+|+.+++..+ ..+++|+.|
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L 158 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF-------DTLHSLSTL 158 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT-------TTCTTCCEE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh-------cCCCCCCEE
Confidence 999999999999888999999999999999999984 678999999999999999999876543 348899999
Q ss_pred EecCCccccccchHHHHHHHHhhcCCceeccccCCCCC
Q psy4257 303 YLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPD 340 (419)
Q Consensus 303 ~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~ 340 (419)
++++|+|.|+|.+.|+..|++... ...+...|..+
T Consensus 159 ~L~~N~l~c~c~l~~l~~~~~~~~---~~~~~~~C~~P 193 (220)
T 2v70_A 159 NLLANPFNCNCYLAWLGEWLRKKR---IVTGNPRCQKP 193 (220)
T ss_dssp ECCSCCEECSGGGHHHHHHHHHSC---CBCCCCEEEES
T ss_pred EecCcCCcCCCchHHHHHHHHhcC---ccccCCccCCC
Confidence 999999999999999999998632 22345566544
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.90 E-value=7.5e-24 Score=210.08 Aligned_cols=220 Identities=16% Similarity=0.204 Sum_probs=147.6
Q ss_pred CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCC
Q psy4257 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152 (419)
Q Consensus 73 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 152 (419)
+|+.|++++|++.+++... .++|++|+|++|.|+.+| ..+++|+.|++++|.+++++ . +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEECCC
Confidence 6777777777777754432 256777777777777776 34567777777777777643 3 443 777777777
Q ss_pred CCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCc
Q psy4257 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232 (419)
Q Consensus 153 n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 232 (419)
|++..++. .+++|+.|++++|.++.+|. .+++|+.|+|++|.|++++. |. ++|+.|+|++|+|+
T Consensus 130 N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 130 NQLTMLPE---------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCSCCCC---------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CcCCCCCC---------cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCC
Confidence 77766432 35677788888888777765 56788899999998888644 55 88999999999988
Q ss_pred ccCchhccCCCCC-------ceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEec
Q psy4257 233 TLEETSKTFLPAL-------EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE 305 (419)
Q Consensus 233 ~~~~~~~~~l~~L-------~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~ 305 (419)
.++. +.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|.|++..+..+...............++++
T Consensus 194 ~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~ 269 (571)
T 3cvr_A 194 SLPA--VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269 (571)
T ss_dssp SCCC--CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC-
T ss_pred chhh--HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeec
Confidence 8776 432 66 999999999999998888899999999999999876555443211100000111223333
Q ss_pred C-------CccccccchHHHHHHHH
Q psy4257 306 G-------NPVLCDDSMRAVIDAME 323 (419)
Q Consensus 306 ~-------Np~~c~~~~~~~~~~l~ 323 (419)
+ +| .|+|...|+.++.+
T Consensus 270 ~~~~~~~~~p-~~~~~~~Wl~~~~~ 293 (571)
T 3cvr_A 270 DGQQNTLHRP-LADAVTAWFPENKQ 293 (571)
T ss_dssp ---------C-CSHHHHTTCC----
T ss_pred cccccccccc-chhhHHHHhhhhcc
Confidence 3 55 79999888866543
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=9.4e-24 Score=195.47 Aligned_cols=225 Identities=18% Similarity=0.180 Sum_probs=144.0
Q ss_pred cccceeecccccCcc--Ccc--ccccccccceeecccccccCc-hhhh--cCCCCCCEEecCCCCCcccCh----hhhcC
Q psy4257 26 SKLQLLVIEQNQLEA--LPS--DIQLFSQLGSLYANNNRITSL-DGLL--RGLTKLQVFNMDFNQITMVRR----DEFQN 94 (419)
Q Consensus 26 ~~L~~L~L~~n~l~~--i~~--~~~~~~~L~~L~l~~n~i~~l-~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~ 94 (419)
..++.|.+.++.+.. +.. .+..+.+|++|++++|.+.+. +..+ ..+++|+.|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 345666666665541 111 122345577777777777653 4444 667777777777777765322 34456
Q ss_pred CCCCCEEEccCCcCcccc-ccccCCccCcEEeccccccccc---C-hhhhcCCCCccEEEcCCCCCccccCCCCCCCccc
Q psy4257 95 LHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF---L-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169 (419)
Q Consensus 95 ~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~---~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 169 (419)
+++|++|+|++|++..++ ..+..+++|++|++++|.+.+. . ...+..+++|++|++++|++..++.. ....+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV--CAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH--HHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH--HHHHHh
Confidence 777777777777776654 4566777777777777776542 1 12235667777777777777543321 000134
Q ss_pred CcccccEEEcCCCCCcCc-hhhhcCC---CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCC
Q psy4257 170 GVTNIFELKLQHNEIENL-DGALMGI---HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL 245 (419)
Q Consensus 170 ~~~~L~~L~l~~n~l~~~-~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 245 (419)
.+++|++|+|++|.+..+ |..+..+ ++|++|+|++|+++.+ |..+. ++|++|+|++|++++++. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSCCC--TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCCch--hhhCCCc
Confidence 556777777777777765 5444444 6888888888888876 44443 688888888888888743 5667888
Q ss_pred ceEeCcCCcccc
Q psy4257 246 EELFVSHNSLTR 257 (419)
Q Consensus 246 ~~L~L~~N~i~~ 257 (419)
+.|+|++|.|+.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 888888888764
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=7.7e-23 Score=183.42 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=51.5
Q ss_pred cceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccc
Q psy4257 51 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN 129 (419)
Q Consensus 51 L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n 129 (419)
.++++++++.+..+|..+. ++++.|++++|++.++.+..|.++++|++|+|++|.|+.++ ..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445555555555443222 35556666666665555555555555555555555555442 22444445555555555
Q ss_pred cccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 130 QLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 130 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
.+.+..+..|..+++|++|++++|++.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 120 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLK 120 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCC
Confidence 444444344444444444444444443
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.8e-24 Score=201.34 Aligned_cols=247 Identities=18% Similarity=0.191 Sum_probs=130.0
Q ss_pred CcEEecccccccccccccccc--cccceeecccccCccCccccccccccceeecccccccC--chhhhcCCCCCCEEecC
Q psy4257 5 LNWLFLNNNRLKSLEGQLGTL--SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS--LDGLLRGLTKLQVFNMD 80 (419)
Q Consensus 5 L~~L~l~~n~l~~l~~~~~~~--~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~--l~~~~~~l~~L~~L~l~ 80 (419)
++.|+++++.+. +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.+.. ++..+..+++|+.|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455666666554 2223333 56666666666666554444556666666666666553 45555666666666666
Q ss_pred CCCCcccChhhhcCCCCCCEEEccCC-cCcc--ccccccCCccCcEEecccc-ccccc-ChhhhcCCC-CccEEEcCCCC
Q psy4257 81 FNQITMVRRDEFQNLHNLDSISLQNN-QITS--MNSSLSGLTKLAYLYLSHN-QLTEF-LLDDIRGLK-RLRTVDLSYNK 154 (419)
Q Consensus 81 ~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~--i~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~ 154 (419)
+|.+.+..+..|+.+++|++|++++| .++. ++..+..+++|++|++++| .+++. .+..+..++ +|++|++++|.
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 66665555555666666666666666 4552 4444555566666666666 55542 233445555 56666665553
Q ss_pred CccccCCCCCCCcccCcccccEEEcCCCCC--cCchhhhcCCCCCcEEEcCCCC-CCCcCcccCCCCCCCcEEEccCCc-
Q psy4257 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSLKMLDISHNL- 230 (419)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~- 230 (419)
+ .+ ..++..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 207 ~---------------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 207 K---------------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp G---------------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred c---------------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 2 11 1233444455566666666665 444444455555666666666653
Q ss_pred CcccCchhccCCCCCceEeCcCCcccccCccCCCC-CCcCEEecCCCcccccch
Q psy4257 231 LTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGL-PVLCKADLAHNNIKAINI 283 (419)
Q Consensus 231 l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l-~~L~~L~L~~N~l~~~~~ 283 (419)
+.......+..+++|+.|++++| +.. ..+..+ ..+..|++++|+++++.+
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIAR 310 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence 22222223445566666666655 221 112222 124444556666665443
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.8e-24 Score=201.28 Aligned_cols=245 Identities=16% Similarity=0.146 Sum_probs=185.1
Q ss_pred ccceeecccccccCchhhhcCC--CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcc--ccccccCCccCcEEe
Q psy4257 50 QLGSLYANNNRITSLDGLLRGL--TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLY 125 (419)
Q Consensus 50 ~L~~L~l~~n~i~~l~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--i~~~l~~l~~L~~L~ 125 (419)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.. ++..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4788888888776 4445555 7889999999988887665 4568899999999998873 667788889999999
Q ss_pred cccccccccChhhhcCCCCccEEEcCCC-CCccccCCCCCCCcccCcccccEEEcCCC-CCcC--chhhhcCCC-CCcEE
Q psy4257 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYN-KINKFGTRNEGKNQVQGVTNIFELKLQHN-EIEN--LDGALMGIH-GLSRL 200 (419)
Q Consensus 126 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~--~~~~~~~l~-~L~~L 200 (419)
+++|.+.+..+..+..+++|++|++++| .+.... ....+..+++|++|++++| .++. ++..+..++ +|++|
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 9999888777778888899999999998 565321 1123567788999999999 8875 567778899 99999
Q ss_pred EcCCC--CCC-CcCcccCCCCCCCcEEEccCCc-CcccCchhccCCCCCceEeCcCCc-ccccC-ccCCCCCCcCEEecC
Q psy4257 201 DLSHN--KLR-TISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHNS-LTRLD-KDFHGLPVLCKADLA 274 (419)
Q Consensus 201 ~Ls~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~l~-~~~~~l~~L~~L~L~ 274 (419)
++++| .++ ...+..+..+++|++|++++|. +++.....+..+++|+.|++++|. +.... ..+..+++|+.|+++
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 99999 454 2225566778999999999999 776666677889999999999995 32211 257889999999999
Q ss_pred CCcccccchhhhhhcccceecCCcceeEEecCCcccc
Q psy4257 275 HNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 275 ~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
+| +..-....+ ...+..|++++|.+..
T Consensus 281 ~~-i~~~~~~~l---------~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 281 GI-VPDGTLQLL---------KEALPHLQINCSHFTT 307 (336)
T ss_dssp TS-SCTTCHHHH---------HHHSTTSEESCCCSCC
T ss_pred Cc-cCHHHHHHH---------HhhCcceEEecccCcc
Confidence 99 443222211 1234556688887654
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=1.8e-22 Score=184.86 Aligned_cols=193 Identities=24% Similarity=0.362 Sum_probs=111.9
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+.++..+.+.++.+..+ ..+..+++|+.|++++|.+..++. +..+++|+.|++++|++.++.+ +.++++|++|+++
T Consensus 23 l~~~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 23 FAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHHHTTCSCTTSE-ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHHHhcCCCcccc-cchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 34455555666655544 234556667777777777766654 5666777777777777766644 6667777777777
Q ss_pred CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
+|.++.++. +..+++|++|++++|.+.+. ..+..+++|+.|++++|++..+
T Consensus 99 ~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-------------------------- 149 (291)
T 1h6t_A 99 ENKVKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-------------------------- 149 (291)
T ss_dssp SSCCCCGGG-GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------
T ss_pred CCcCCCChh-hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------------------------
Confidence 777666543 66666666666666666653 3455566666666666655543
Q ss_pred cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257 185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258 (419)
Q Consensus 185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l 258 (419)
..+..+++|+.|++++|.++++.+ +..+++|+.|+|++|.+++++ .+..+++|+.|++++|.+...
T Consensus 150 ----~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 150 ----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ----GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECC
T ss_pred ----hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCC
Confidence 233444555555555555554432 445555555555555555543 244455555555555555443
No 99
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.6e-23 Score=211.34 Aligned_cols=177 Identities=15% Similarity=0.068 Sum_probs=81.3
Q ss_pred ccccccceeecccccccCchhhhcCCCCCCEEecCCCCCc---ccChhhhcCCCCCCEEEccCCcCccccccccCCccCc
Q psy4257 46 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT---MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA 122 (419)
Q Consensus 46 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~ 122 (419)
..+++|+.|++++|.+.+++..+..+++|+.|+++..... ......+..+.+|+.|+++++....++..+..+++|+
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 3444444444444444444444444444444444421111 0011123334444444444444444555566677777
Q ss_pred EEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCC-----------CCCcC--ch
Q psy4257 123 YLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-----------NEIEN--LD 188 (419)
Q Consensus 123 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~--~~ 188 (419)
+|++++|.+.+... ..+..+++|+.|+++ +.+.... .......+++|++|++++ +.++. +.
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~----l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRG----LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHH----HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHH----HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 77777777554322 234666777777766 3222111 011123345566666662 33332 12
Q ss_pred hhhcCCCCCcEEEcCCCCCCCcCcccCCC-CCCCcEEEcc
Q psy4257 189 GALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDIS 227 (419)
Q Consensus 189 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~ 227 (419)
..+..+++|++|+++.|.+++.....+.. +++|+.|+++
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 22234555555555555554433333332 4555555553
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=6.2e-22 Score=196.32 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=138.4
Q ss_pred ccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257 27 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 106 (419)
+|+.|+|++|.|+.+|..+ +++|+.|+|++|.|..+| ..+++|+.|++++|+|++++. |.+ +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCC
Confidence 7888888888888877655 367888888888888777 456788888888888888654 544 7888888888
Q ss_pred cCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcC
Q psy4257 107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN 186 (419)
Q Consensus 107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 186 (419)
+|+.+|. .+++|+.|++++|.+++++. .+++|+.|++++|++..++. +. ++|+.|+|++|.|+.
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-------l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-------LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-------CC--TTCCEEECCSSCCSS
T ss_pred cCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-------hh--CCCCEEECcCCCCCc
Confidence 8888766 56788888888888877433 46788888888888877543 22 778888888888888
Q ss_pred chhhhcCCCCC-------cEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhcc
Q psy4257 187 LDGALMGIHGL-------SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240 (419)
Q Consensus 187 ~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 240 (419)
+|. +.. +| +.|+|++|.|+.+ |..+..+++|+.|+|++|.+++..+..+.
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 776 443 66 8888888888887 44555688888899988888876555444
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.87 E-value=7.9e-22 Score=169.26 Aligned_cols=141 Identities=22% Similarity=0.342 Sum_probs=105.8
Q ss_pred cEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCc
Q psy4257 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS 254 (419)
Q Consensus 175 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 254 (419)
+.+++++|.+..+|..+. .+|++|++++|.|+.+ +..|..+++|+.|+|++|.|+.++...|..+++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666666666664332 4677777777777766 3667777777777777777777777777777777777777777
Q ss_pred ccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhh
Q psy4257 255 LTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETI 325 (419)
Q Consensus 255 i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~ 325 (419)
|+.++ ..|..+++|+.|+|++|.|+.++...+. .+++|+.+++++|||.|+|.+.||..|++..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~ 154 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN-------DLSALSHLAIGANPLYCDCNMQWLSDWVKSE 154 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-------TCTTCCEEECCSSCEECSGGGHHHHHHHHHS
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh-------cCccccEEEeCCCCeecCCcCHHHHHHHHhc
Confidence 77776 3577778888888888888877765432 3788899999999999999999999999873
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=6.3e-22 Score=181.32 Aligned_cols=195 Identities=23% Similarity=0.361 Sum_probs=144.6
Q ss_pred cccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEeccc
Q psy4257 49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 128 (419)
Q Consensus 49 ~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~ 128 (419)
..+..+.+..+.+..+.. +..+++|+.|++++|.+..+. .+..+++|++|++++|+++.++. +..+++|++|++++
T Consensus 24 ~~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred HHHHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence 344455566666655432 234566777777777777663 36667777777777777776654 66666677777776
Q ss_pred ccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCC
Q psy4257 129 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 208 (419)
Q Consensus 129 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~ 208 (419)
|.+.+. ..+..+++|+.|++++|++ ..++ .+..+++|+.|++++|.++
T Consensus 100 n~l~~~--~~l~~l~~L~~L~L~~n~i-----------------------------~~~~-~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 100 NKVKDL--SSLKDLKKLKSLSLEHNGI-----------------------------SDIN-GLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp SCCCCG--GGGTTCTTCCEEECTTSCC-----------------------------CCCG-GGGGCTTCCEEECCSSCCC
T ss_pred CcCCCC--hhhccCCCCCEEECCCCcC-----------------------------CCCh-hhcCCCCCCEEEccCCcCC
Confidence 666653 2355555555555555554 4442 4667889999999999999
Q ss_pred CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCccCCCCCCcCEEecCCCcccccchh
Q psy4257 209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQ 284 (419)
Q Consensus 209 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (419)
++ ..+..+++|++|++++|.+.++.+ +..+++|+.|++++|.|+.++. +..+++|+.|++++|++...+..
T Consensus 148 ~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 148 DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCEE
T ss_pred cc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCccc
Confidence 87 578899999999999999999876 7889999999999999999974 89999999999999999876654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.86 E-value=1.5e-21 Score=195.50 Aligned_cols=197 Identities=24% Similarity=0.368 Sum_probs=145.5
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+..+..+.+.++.+..+. .+..+.+|+.|++++|.|..++. +..+++|+.|+|++|++.++.+ |..+++|+.|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 455666677777776553 35667778888888888887764 6778888888888888887755 7778888888888
Q ss_pred CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
+|.|..++ .+..+++|+.|+|++|.+.++ ..+..+++|+.|+|++|++..+. .+..+++|+.|+|++|.+
T Consensus 96 ~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~-------~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 96 ENKIKDLS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT-------VLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp SSCCCCCT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------GGGSCTTCSEEECCSSCC
T ss_pred CCCCCCCh-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCch-------hhcccCCCCEEECcCCcC
Confidence 88887774 677778888888888887764 35777788888888888777652 456677777777777777
Q ss_pred cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchh
Q psy4257 185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238 (419)
Q Consensus 185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 238 (419)
..++. +..+++|+.|+|++|.|+++ ..|..+++|+.|+|++|.+...+...
T Consensus 166 ~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 166 SDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 77655 77777888888888887776 34777788888888888777654433
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=4.7e-23 Score=207.82 Aligned_cols=299 Identities=14% Similarity=0.085 Sum_probs=205.8
Q ss_pred CCCCcEEeccccccc-----ccccccccccccceeecccccCccCccccccccccceeeccccccc----CchhhhcCCC
Q psy4257 2 LTDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT----SLDGLLRGLT 72 (419)
Q Consensus 2 l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~----~l~~~~~~l~ 72 (419)
+++|++|++++|.++ .++..+..+++|+.|++++|.+..++..+..+++|++|+++..... .....+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 455666666666654 2223344589999999999999888888899999999999853222 2234567788
Q ss_pred CCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccc--cccccCCccCcEEecccccccccChhhhcCCCCccEEEc
Q psy4257 73 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150 (419)
Q Consensus 73 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 150 (419)
+|+.|+++++....+ +..+..+++|++|+|++|.++.. ...+..+++|+.|+++++...+.....+..+++|+.|++
T Consensus 271 ~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 999999988654444 45677888999999999987632 344678899999999843322223334466788999999
Q ss_pred CC-----------CCCccccCCCCCCCcccCcccccEEEcCCCCCcCc-hhhhc-CCCCCcEEEcC----CCCCCCcC--
Q psy4257 151 SY-----------NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALM-GIHGLSRLDLS----HNKLRTIS-- 211 (419)
Q Consensus 151 ~~-----------n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~l~~L~~L~Ls----~n~l~~~~-- 211 (419)
++ +.+..... ......+++|++|++..|.++.. ...+. .+++|+.|+++ .|.+++..
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGL----IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHH----HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred ecCccccccccccCccCHHHH----HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 83 44443211 11234578899999988887743 23333 47889999996 66777642
Q ss_pred ---cccCCCCCCCcEEEccCCc--CcccCchhc-cCCCCCceEeCcCCcccc--cCccCCCCCCcCEEecCCCcccccch
Q psy4257 212 ---PDDFIGLDSLKMLDISHNL--LTTLEETSK-TFLPALEELFVSHNSLTR--LDKDFHGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 212 ---~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~N~i~~--l~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (419)
+..+.++++|+.|++++|. +++.....+ ..+++|+.|+|++|++++ ++..+..+++|++|+|++|.++....
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 2235568899999997644 554333322 347889999999999875 44456788999999999999764332
Q ss_pred hhhhhcccceecCCcceeEEecCCcccc
Q psy4257 284 QLALKTQCQIFGLNSTLRIYLEGNPVLC 311 (419)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~l~l~~Np~~c 311 (419)
..+ ...+++|+.|++++|.+..
T Consensus 506 ~~~------~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 506 AAA------VTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHH------HHHCSSCCEEEEESCBCCT
T ss_pred HHH------HHhcCccCeeECcCCcCCH
Confidence 222 1237889999999998543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=3.7e-21 Score=192.72 Aligned_cols=194 Identities=23% Similarity=0.356 Sum_probs=168.1
Q ss_pred ccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecc
Q psy4257 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127 (419)
Q Consensus 48 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~ 127 (419)
+..+..+.+..+.+..+.. +..+.+|+.|++++|.+..+. .|..+++|+.|+|++|+|..++. +..+++|+.|+|+
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence 4456777888888887643 456789999999999999885 58999999999999999999865 8899999999999
Q ss_pred cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCC
Q psy4257 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207 (419)
Q Consensus 128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l 207 (419)
+|.+.+.. .+..+++|+.|+|++|++..++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+
T Consensus 96 ~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~-------~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 96 ENKIKDLS--SLKDLKKLKSLSLEHNGISDIN-------GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp SSCCCCCT--TSTTCTTCCEEECTTSCCCCCG-------GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC
T ss_pred CCCCCCCh--hhccCCCCCEEEecCCCCCCCc-------cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC
Confidence 99998853 7889999999999999998753 467889999999999999988 5688899999999999999
Q ss_pred CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259 (419)
Q Consensus 208 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~ 259 (419)
.++.+ +..+++|+.|+|++|.|.+++ .+..+++|+.|+|++|.+...|
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCc
Confidence 98865 888999999999999999874 5778999999999999988765
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=1.1e-20 Score=162.06 Aligned_cols=155 Identities=23% Similarity=0.252 Sum_probs=122.9
Q ss_pred cEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcc-cCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD-DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253 (419)
Q Consensus 175 ~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 253 (419)
+.+++++|.++.+|..+. .+|++|++++|.++++.+. .|..+++|++|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 567777777777776443 3788888888888888664 4788888999999999988888888888889999999999
Q ss_pred cccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceec
Q psy4257 254 SLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIH 332 (419)
Q Consensus 254 ~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~ 332 (419)
+|++++. .|..+++|++|+|++|+|+++.+..+ ..+++|+.+++++|+|.|+|.+.|+..|++.... ..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-------~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~---~~ 158 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF-------EHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL---NG 158 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS-------TTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCC---SG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh-------hcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCC---CC
Confidence 9988764 48888999999999999988766533 3478899999999999999999999999987422 22
Q ss_pred cccCCCCCC
Q psy4257 333 GETICQPDS 341 (419)
Q Consensus 333 ~~~~c~~~~ 341 (419)
....|..+.
T Consensus 159 ~~~~C~~P~ 167 (192)
T 1w8a_A 159 GAARCGAPS 167 (192)
T ss_dssp GGCBBCSST
T ss_pred CCCCCCCCh
Confidence 345675543
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.84 E-value=2.8e-21 Score=174.24 Aligned_cols=172 Identities=22% Similarity=0.325 Sum_probs=111.5
Q ss_pred ccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+.++..++++++.++.++ .+..+++|+.|++++|.|..++ .+..+++|+.|++++|++.++.+ |.++++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 556667777777777665 5666777777777777777766 46666777777777777776654 6667777777777
Q ss_pred CCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCC
Q psy4257 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184 (419)
Q Consensus 105 ~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 184 (419)
+|+++.++.... ++|+.|++++|.+.+. ..+..+++|+.|++++|++.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~---------------------------- 141 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK---------------------------- 141 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC----------------------------
T ss_pred CCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC----------------------------
Confidence 777766643222 5666666666666553 23555555555555555544
Q ss_pred cCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257 185 ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 236 (419)
Q Consensus 185 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 236 (419)
.++ .+..+++|+.|++++|.++++ ..+..+++|+.|++++|.+...+.
T Consensus 142 -~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 142 -SIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp -BCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred -CCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 333 355667777777777777766 456677777777777777766543
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.4e-20 Score=163.72 Aligned_cols=126 Identities=25% Similarity=0.320 Sum_probs=62.2
Q ss_pred eeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257 30 LLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108 (419)
Q Consensus 30 ~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 108 (419)
.++++++.++.+|..+ .++|++|++++|.+..++ ..|..+++|++|++++|++.++.+..|.++++|++|++++|++
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4444455555444332 234555555555555443 2344555555555555555555444455555555555555555
Q ss_pred ccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 109 TSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 109 ~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
+.++. .+..+++|++|++++|.+.+..+..|..+++|+.|++++|++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 54432 23445555555555555554444444455555555555554443
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.8e-20 Score=161.76 Aligned_cols=178 Identities=21% Similarity=0.284 Sum_probs=124.1
Q ss_pred ceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccc-cccCCccCcEEeccccc
Q psy4257 52 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQ 130 (419)
Q Consensus 52 ~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~ 130 (419)
+.++++++.+..+|..+ .++|++|++++|++.++.+..|.++++|++|++++|+++.++. .|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56777777777777433 3578888888888888777777778888888888887777754 35667777777777777
Q ss_pred ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCc
Q psy4257 131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210 (419)
Q Consensus 131 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~ 210 (419)
+.+..+..|..+++|++|++++|++..++. ..+..+++|++|++++|.++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------------------~~~~~l~~L~~L~l~~N~l~~~ 139 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPD----------------------------GVFDKLTQLKDLRLYQNQLKSV 139 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------------------TTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCH----------------------------hHhccCCcCCEEECCCCcccee
Confidence 776665556666666666666666654321 2345667777777877777777
Q ss_pred CcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc-cCccCCCCC
Q psy4257 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR-LDKDFHGLP 266 (419)
Q Consensus 211 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-l~~~~~~l~ 266 (419)
.+..|..+++|++|++++|.+.. .+++|+.|+++.|++++ +|..+..++
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 66667777888888888876543 35677777777777774 565555443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=2.3e-20 Score=176.38 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=53.0
Q ss_pred eeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhc-CCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc
Q psy4257 53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQ-NLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ 130 (419)
Q Consensus 53 ~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~ 130 (419)
.++++++.+..+|..+. ..++.|+|++|+|.++.+..|. ++.+|+.|+|++|+|+.++ ..|..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 44555555555443222 2355555555555555555554 5555555555555555543 235555555555555555
Q ss_pred ccccChhhhcCCCCccEEEcCCCCCcc
Q psy4257 131 LTEFLLDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 131 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
+..+.+..|..+++|+.|+|++|+|..
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~ 126 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVV 126 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccE
Confidence 555444445555555555555555443
No 111
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=9.6e-22 Score=198.32 Aligned_cols=299 Identities=14% Similarity=0.136 Sum_probs=165.2
Q ss_pred CCCCcEEecccc-cccc--cccccccccccceeecccccCccC-----ccccccccccceeeccccc--cc--Cchhhhc
Q psy4257 2 LTDLNWLFLNNN-RLKS--LEGQLGTLSKLQLLVIEQNQLEAL-----PSDIQLFSQLGSLYANNNR--IT--SLDGLLR 69 (419)
Q Consensus 2 l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~n~l~~i-----~~~~~~~~~L~~L~l~~n~--i~--~l~~~~~ 69 (419)
+++|++|++++| .++. ++..+..+++|+.|+|++|.++.. +.....+++|++|++++|. +. .+...+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 567888888877 4543 333334577888888888876632 2223356678888887775 22 1333344
Q ss_pred CCCCCCEEecCCC-CCcccChhhhcCCCCCCEEEccCCc-------------------------------CccccccccC
Q psy4257 70 GLTKLQVFNMDFN-QITMVRRDEFQNLHNLDSISLQNNQ-------------------------------ITSMNSSLSG 117 (419)
Q Consensus 70 ~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~-------------------------------l~~i~~~l~~ 117 (419)
.+++|+.|++++| .+.+ .+..+..+++|+.|++..+. ...++..+..
T Consensus 209 ~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred hCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 5677777777776 2222 22333444444444432221 1112222224
Q ss_pred CccCcEEecccccccccCh-hhhcCCCCccEEEcCCCCCccccCC--------------------------C----CCCC
Q psy4257 118 LTKLAYLYLSHNQLTEFLL-DDIRGLKRLRTVDLSYNKINKFGTR--------------------------N----EGKN 166 (419)
Q Consensus 118 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~--------------------------~----~~~~ 166 (419)
+++|+.|++++|.+.+... ..+..+++|+.|++++| +...... . ....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 4556666666665443211 12334555555555544 2110000 0 0000
Q ss_pred cccCcccccEEEcCCCCCcCch-hhh-cCCCCCcEEEcC--C----CCCCCcCc-----ccCCCCCCCcEEEccCCcCcc
Q psy4257 167 QVQGVTNIFELKLQHNEIENLD-GAL-MGIHGLSRLDLS--H----NKLRTISP-----DDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 167 ~~~~~~~L~~L~l~~n~l~~~~-~~~-~~l~~L~~L~Ls--~----n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~ 233 (419)
....+++|+.|.+..|.++... ..+ ..+++|+.|+++ + +.++.... ..+..+++|+.|+|++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 1123556666666666665322 222 346778888887 3 45553221 1245567888888876 5555
Q ss_pred cCchhccC-CCCCceEeCcCCcccccC-cc-CCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCcc
Q psy4257 234 LEETSKTF-LPALEELFVSHNSLTRLD-KD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309 (419)
Q Consensus 234 ~~~~~~~~-l~~L~~L~L~~N~i~~l~-~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~ 309 (419)
.....+.. +++|+.|+|++|.+++.. .. ...+++|+.|+|++|.++....... ...+++|+.|++++|+.
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~------~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN------ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT------GGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH------HHhCCCCCEEeeeCCCC
Confidence 43333333 788999999999886532 22 2568899999999999854443322 12368899999999987
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=5.8e-20 Score=162.16 Aligned_cols=149 Identities=26% Similarity=0.363 Sum_probs=100.8
Q ss_pred cEEecccccccccccccccccccceeecccccCccC-ccccccccccceeecccccccCch-hhhcCCCCCCEEecCCCC
Q psy4257 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQ 83 (419)
Q Consensus 6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i-~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~ 83 (419)
+.++++++.++.+|..+. ++|+.|+|++|.|+.+ +..|..+++|++|+|++|.|..++ ..|..+++|+.|+|++|+
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456666777766665443 5677777777777765 445666777777777777776665 445667777777777777
Q ss_pred CcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 84 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 84 l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
|+++.+..|..+++|++|+|++|+|+.+|..+..+++|++|+|++|.+.++.+..|..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 7777666666777777777777777777666666677777777777776666566666666777777666654
No 113
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.1e-20 Score=174.38 Aligned_cols=220 Identities=15% Similarity=0.104 Sum_probs=139.3
Q ss_pred CCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc----ccccChhhhcCCCCc
Q psy4257 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ----LTEFLLDDIRGLKRL 145 (419)
Q Consensus 71 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~----l~~~~~~~~~~l~~L 145 (419)
+.+|+.|++.+ .++.+...+|.++.+|+.|++.+|.+..|+ ..|..+.++..+.+..+. ...+....|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66777777766 666666666777777777777766666653 345555555555544421 112222334444444
Q ss_pred c-EEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh-cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcE
Q psy4257 146 R-TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL-MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223 (419)
Q Consensus 146 ~-~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 223 (419)
+ .+.+..... ++.. .........++..+.+.++-...-...+ ..+++|+.|+|++|.++.+...+|.++.+|+.
T Consensus 179 ~~~i~~~~~~~--l~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMGK--LEDE--IMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTCC--HHHH--HHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCCc--HHHH--HhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 4 333322110 0000 0000012334445555443211111111 23788999999998899998888999999999
Q ss_pred EEccCCcCcccCchhccCCCCCc-eEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCccee
Q psy4257 224 LDISHNLLTTLEETSKTFLPALE-ELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301 (419)
Q Consensus 224 L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~ 301 (419)
|+|.+| +..++..+|.++.+|+ .+++.+ .++.|+ .+|.+|++|+.+++++|+++.|+...+ .++++|+.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF-------~~~~~L~~ 325 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF-------GNGVPSKL 325 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT-------CTTCCCCE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh-------cCCcchhh
Confidence 999887 8888888999999998 999988 788886 678899999999999999998887754 34777777
Q ss_pred EEe
Q psy4257 302 IYL 304 (419)
Q Consensus 302 l~l 304 (419)
|+.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 763
No 114
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=1.2e-19 Score=158.98 Aligned_cols=151 Identities=25% Similarity=0.346 Sum_probs=89.7
Q ss_pred CEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEE
Q psy4257 99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178 (419)
Q Consensus 99 ~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~ 178 (419)
+.++++++.++.+|..+. ++|+.|++++|.+.++.+..|..+++|+.|+|++|++..+.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~------------------- 72 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA------------------- 72 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-------------------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-------------------
Confidence 456666666666665443 46666666666666665556666666666666666665442
Q ss_pred cCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccccc
Q psy4257 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258 (419)
Q Consensus 179 l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l 258 (419)
+..|.++++|++|+|++|.|+.+.+..|.++++|++|+|++|+|..+.+..|..+++|+.|+|++|+|+.+
T Consensus 73 ---------~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 73 ---------PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143 (220)
T ss_dssp ---------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEE
Confidence 23344555555555555555555555555556666666666666665555555566666666666666665
Q ss_pred Cc-cCCCCCCcCEEecCCCccc
Q psy4257 259 DK-DFHGLPVLCKADLAHNNIK 279 (419)
Q Consensus 259 ~~-~~~~l~~L~~L~L~~N~l~ 279 (419)
+. .|..+++|+.|+|++|.+.
T Consensus 144 ~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 144 AKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCEE
T ss_pred CHHHHhCCCCCCEEEeCCCCcC
Confidence 53 3555666666666666654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=2.9e-20 Score=160.22 Aligned_cols=153 Identities=15% Similarity=0.315 Sum_probs=116.9
Q ss_pred ccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 23 ~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
..+++|+.|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|++.+..+..|..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 44778888888888888777 6788888888888888777765 477788888888888888876667788888888888
Q ss_pred ccCCcCcc-ccccccCCccCcEEeccccc-ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcC
Q psy4257 103 LQNNQITS-MNSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180 (419)
Q Consensus 103 L~~n~l~~-i~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~ 180 (419)
+++|.++. .+..+..+++|++|++++|. +... + .+..+++|+.|++++|++..++ .+..+++|+.|+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-------~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-------GIEDFPKLNQLYAF 189 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-------TGGGCSSCCEEEEC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-------HhccCCCCCEEEee
Confidence 88888875 45667788888888888887 6554 2 6777888888888888887653 35677888888888
Q ss_pred CCCCcC
Q psy4257 181 HNEIEN 186 (419)
Q Consensus 181 ~n~l~~ 186 (419)
+|++..
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 887653
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=159.73 Aligned_cols=149 Identities=25% Similarity=0.375 Sum_probs=90.7
Q ss_pred cEEecccccccccccccccccccceeecccccCccCc--cccccccccceeecccccccCch-hhhcCCCCCCEEecCCC
Q psy4257 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFN 82 (419)
Q Consensus 6 ~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~--~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n 82 (419)
+.+++++|.++.+|..+. ..++.|+|++|.|+.++ ..|..+++|+.|++++|.|..++ ..|.++++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 356666666666655442 24566666666666552 23566666666666666666654 35666666666666666
Q ss_pred CCcccChhhhcCCCCCCEEEccCCcCccc-cccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 83 QITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 83 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~i-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
++.++.+..|.++++|++|+|++|+|+.+ |..|..+++|++|+|++|.+.+..+..|..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66666666666666666666666666655 345566666666666666666655566666666666666666554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=1.5e-20 Score=169.46 Aligned_cols=171 Identities=25% Similarity=0.309 Sum_probs=103.5
Q ss_pred ccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecc
Q psy4257 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127 (419)
Q Consensus 48 ~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~ 127 (419)
+.++..++++++.+..++ .+..+++|+.|++++|++..+. .+..+++|++|++++|+|+.++. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L- 92 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV- 92 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC-
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC-
Confidence 445555566666665554 2445555666666666555543 35555555555555555555433 444444444444
Q ss_pred cccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCC
Q psy4257 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207 (419)
Q Consensus 128 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l 207 (419)
++|++..++.. .. .+|+.|++++|.++.++ .+..+++|+.|++++|++
T Consensus 93 -----------------------~~N~l~~l~~~-------~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 93 -----------------------NRNRLKNLNGI-------PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL 140 (263)
T ss_dssp -----------------------CSSCCSCCTTC-------CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC
T ss_pred -----------------------CCCccCCcCcc-------cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC
Confidence 44444433211 11 44555555555555554 366778888888888888
Q ss_pred CCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC
Q psy4257 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259 (419)
Q Consensus 208 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~ 259 (419)
+++. .+..+++|+.|+|++|.+.++ ..+..+++|+.|++++|.+...+
T Consensus 141 ~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 141 KSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 7762 577778888888888888777 45667778888888888777665
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.82 E-value=3.6e-19 Score=150.57 Aligned_cols=155 Identities=23% Similarity=0.320 Sum_probs=130.5
Q ss_pred ccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257 174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253 (419)
Q Consensus 174 L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 253 (419)
.+.++++++.+..+|..+ .++|++|++++|.+.++.+..|..+++|++|++++|.++.++...|..+++|++|+|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 467777888887777543 368999999999999988888899999999999999999998888888999999999999
Q ss_pred cccccCc-cCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCcee
Q psy4257 254 SLTRLDK-DFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNTKI 331 (419)
Q Consensus 254 ~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~~~ 331 (419)
+|++++. .|..+++|+.|++++|+|+.++...+. .+++|+.+++++|+|.|+|. +.|+..|+... ....
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-------~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~--~~~~ 157 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFD-------RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN--SQKE 157 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT-------TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT--GGGE
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhc-------CCcccCEEEecCCCeeccCccHHHHHHHHhhC--cccc
Confidence 9999875 478899999999999999988876432 37889999999999999997 88999998874 3344
Q ss_pred ccccCCCC
Q psy4257 332 HGETICQP 339 (419)
Q Consensus 332 ~~~~~c~~ 339 (419)
.+...|..
T Consensus 158 ~~~~~C~~ 165 (177)
T 2o6r_A 158 QGSAKCSG 165 (177)
T ss_dssp ESCCBBTT
T ss_pred ccCcEeCC
Confidence 56677765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.81 E-value=4.2e-22 Score=198.38 Aligned_cols=189 Identities=18% Similarity=0.161 Sum_probs=87.9
Q ss_pred ccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEe
Q psy4257 46 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 125 (419)
Q Consensus 46 ~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~ 125 (419)
..+++|+.|+|++|.+..||..++.+++|+.|++++|......+..+. ..+....+|..+..+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~----------~~~~~~~~~~~l~~l~~L~~L~ 415 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR----------ALDPLLYEKETLQYFSTLKAVD 415 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------HHCTGGGHHHHHHHHHHHHHHC
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH----------hcccccCCHHHHHHHHhcccCc
Confidence 345667777777777777776677777777777655431000000000 0011112234444445555554
Q ss_pred -cccc-------------cccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhh
Q psy4257 126 -LSHN-------------QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL 191 (419)
Q Consensus 126 -l~~n-------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 191 (419)
++.| .+..+.+ ..|+.|++++|.+..++ .+..+++|+.|+|++|.+..+|..+
T Consensus 416 ~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-------~~~~l~~L~~L~Ls~N~l~~lp~~~ 482 (567)
T 1dce_A 416 PMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-------HLEQLLLVTHLDLSHNRLRALPPAL 482 (567)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-------CGGGGTTCCEEECCSSCCCCCCGGG
T ss_pred chhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCCCc-------CccccccCcEeecCcccccccchhh
Confidence 3333 3322211 12455555555554432 1334444444444444444444444
Q ss_pred cCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccC-chhccCCCCCceEeCcCCcccccC
Q psy4257 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE-ETSKTFLPALEELFVSHNSLTRLD 259 (419)
Q Consensus 192 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~l~ 259 (419)
..+++|+.|+|++|.|+++ | .|..+++|+.|+|++|+|+++. +..+..+++|+.|+|++|.+++++
T Consensus 483 ~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 483 AALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 4445555555555555443 2 3444444555555555444443 334444444444444444444443
No 120
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=2.1e-21 Score=195.83 Aligned_cols=294 Identities=15% Similarity=0.089 Sum_probs=193.4
Q ss_pred CCCCcEEeccccc--cc--ccccccccccccceeecccc-cCccCccccccccccceeeccccc----------------
Q psy4257 2 LTDLNWLFLNNNR--LK--SLEGQLGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNNR---------------- 60 (419)
Q Consensus 2 l~~L~~L~l~~n~--l~--~l~~~~~~~~~L~~L~L~~n-~l~~i~~~~~~~~~L~~L~l~~n~---------------- 60 (419)
+++|++|++++|. +. .+...+..+++|+.|++++| .+..++..+..+++|+.|++..+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 5689999999987 32 22222344799999999988 455666667777788888754432
Q ss_pred ---------------ccCchhhhcCCCCCCEEecCCCCCcccChh-hhcCCCCCCEEEccCCcCc--cccccccCCccCc
Q psy4257 61 ---------------ITSLDGLLRGLTKLQVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQIT--SMNSSLSGLTKLA 122 (419)
Q Consensus 61 ---------------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~--~i~~~l~~l~~L~ 122 (419)
...++..+..+++|+.|++++|.+.+.... .+..+++|+.|++++| +. .++.....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 112333334567888888888886543322 2457788888888877 43 1222234577888
Q ss_pred EEeccc---------ccccccChhhh-cCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcC--C----CCCcC
Q psy4257 123 YLYLSH---------NQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ--H----NEIEN 186 (419)
Q Consensus 123 ~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~--~----n~l~~ 186 (419)
.|++.+ +.+++.....+ .++++|+.|.+..|.+...... .....+++|+.|+++ + +.++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~----~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI----TIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH----HHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH----HHHhhCCCcceeEeecccCCCcccccC
Confidence 888733 44544333333 3478888888877777653211 112357899999998 4 56663
Q ss_pred c------hhhhcCCCCCcEEEcCCCCCCCcCcccCCC-CCCCcEEEccCCcCcccCchhc-cCCCCCceEeCcCCccccc
Q psy4257 187 L------DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258 (419)
Q Consensus 187 ~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~i~~l 258 (419)
. +..+..+++|+.|++++ .++......+.. +++|+.|+|++|.+++.....+ ..+++|+.|+|++|.++..
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 3 23356789999999987 666554444544 7899999999999876544444 5589999999999999653
Q ss_pred C--ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCC
Q psy4257 259 D--KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN 307 (419)
Q Consensus 259 ~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~N 307 (419)
. ..+..+++|+.|++++|+++.-....+. ..++.+....+.++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~------~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVSFGACKLLG------QKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCBHHHHHHHH------HHCTTEEEEEECSS
T ss_pred HHHHHHHhCCCCCEEeeeCCCCCHHHHHHHH------HhCCCCEEEEecCC
Confidence 2 3456689999999999998543333221 23566655555544
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=2.7e-19 Score=166.91 Aligned_cols=226 Identities=13% Similarity=0.112 Sum_probs=166.3
Q ss_pred cCcc-cccc--------ccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc--
Q psy4257 40 ALPS-DIQL--------FSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-- 107 (419)
Q Consensus 40 ~i~~-~~~~--------~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-- 107 (419)
.||. .|.+ +.+|+.|+|.+ .+..|+ .+|.+|.+|+.|++.+|.+..+.+.+|.++.++..+.+..+.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 4443 4777 99999999999 899886 689999999999999999999999999998888877776632
Q ss_pred --Cccc-cccccCCccCc-EEeccccc-ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCC
Q psy4257 108 --ITSM-NSSLSGLTKLA-YLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182 (419)
Q Consensus 108 --l~~i-~~~l~~l~~L~-~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 182 (419)
...+ ...|..+..|+ .+.+.... +............++..+.+.++-.. ... ......+++|+.|+|++|
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~----~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADF----KLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHH----HHHHHHCTTCCEEECTTB
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHH----HHHHHhcCCCeEEECCCC
Confidence 2223 23455666666 44443322 11111111112455666666554211 100 001123678889999988
Q ss_pred CCcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCc-EEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-
Q psy4257 183 EIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK-MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD- 259 (419)
Q Consensus 183 ~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~- 259 (419)
.++.++ .+|.++.+|+.|++.+| +..+...+|.++.+|+ .|++.+ .++.+...+|.++.+|+.|++++|+++.|+
T Consensus 237 ~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 237 NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 888887 56788999999999987 8889899999999999 999988 889999999999999999999999999988
Q ss_pred ccCCCCCCcCEEec
Q psy4257 260 KDFHGLPVLCKADL 273 (419)
Q Consensus 260 ~~~~~l~~L~~L~L 273 (419)
..|.++++|+.++.
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 46899999998864
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=4.2e-19 Score=152.87 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=102.9
Q ss_pred cccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcc-ccccccCCccCcE
Q psy4257 45 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAY 123 (419)
Q Consensus 45 ~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-i~~~l~~l~~L~~ 123 (419)
...+++|+.|++++|.|..++ .+..+++|+.|++++|.+..+ ..+..+++|++|++++|.++. .+..+..+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 356677788888888777777 467777788888887766555 357777777777777777775 4566777777777
Q ss_pred EecccccccccChhhhcCCCCccEEEcCCCC-CccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEc
Q psy4257 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK-INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDL 202 (419)
Q Consensus 124 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L 202 (419)
|++++|.+.+..+..+..+++|+.|++++|+ +.. ++ .+..+++|++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-----------------------------~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-----------------------------IM-PLKTLPELKSLNI 166 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-----------------------------CG-GGGGCSSCCEEEC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-----------------------------cH-hhcCCCCCCEEEC
Confidence 7777777776666667777777777777775 443 33 3455666666666
Q ss_pred CCCCCCCcCcccCCCCCCCcEEEccCCcCcc
Q psy4257 203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233 (419)
Q Consensus 203 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 233 (419)
++|.++++. .+..+++|++|++++|+|.+
T Consensus 167 ~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 167 QFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred CCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 666666553 45566666666666666543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=8.1e-22 Score=196.34 Aligned_cols=203 Identities=23% Similarity=0.252 Sum_probs=157.1
Q ss_pred cCCCCCCEEEccCCcCccccccccCCccCcEEeccccc-------------ccccChhhhcCCCCccEEE-cCCCCCccc
Q psy4257 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ-------------LTEFLLDDIRGLKRLRTVD-LSYNKINKF 158 (419)
Q Consensus 93 ~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~ 158 (419)
..+++|+.|+|++|++..+|..++.+++|+.|++++|. +.+..+..+..+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56788999999999999999999999999999987765 4555667778888888888 666654432
Q ss_pred cCCCCCCCcccC--cccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCc
Q psy4257 159 GTRNEGKNQVQG--VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEE 236 (419)
Q Consensus 159 ~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 236 (419)
.........+.. ...|+.|+|++|.++.+|. +..+++|+.|+|++|.|+.+ |..|..+++|+.|+|++|.|++++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc-
Confidence 210000000000 1258899999999999987 88899999999999999976 678899999999999999999976
Q ss_pred hhccCCCCCceEeCcCCccccc--CccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEE
Q psy4257 237 TSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIY 303 (419)
Q Consensus 237 ~~~~~l~~L~~L~L~~N~i~~l--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~ 303 (419)
.+..+++|+.|+|++|+|+++ |..+..+++|+.|+|++|.|+++++..... +..+++|+.|+
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l----~~~lp~L~~L~ 566 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL----AEMLPSVSSIL 566 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH----HHHCTTCSEEE
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH----HHHCcccCccC
Confidence 688899999999999999998 788999999999999999999887643211 12266777664
No 124
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.78 E-value=1.2e-17 Score=159.29 Aligned_cols=260 Identities=15% Similarity=0.224 Sum_probs=208.9
Q ss_pred ccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 25 LSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
+..++.+.+.+ .++.|+. .|.++ +|+.+.+.++ +..|+ .+|.++ +|+.+.+.. .+..+...+|.+|.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 56788887764 4666754 57765 7999999876 77775 567774 799999986 78899999999999999999
Q ss_pred ccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCC
Q psy4257 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182 (419)
Q Consensus 103 L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 182 (419)
+.+|.++.|+.....+.+|+.+.+..+ +..+...+|.++.+|+.+++..+ +..++.. .|.. .+|+.+.+ .+
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~-----aF~~-~~L~~i~l-p~ 257 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQE-----AFRE-SGITTVKL-PN 257 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTT-----TTTT-CCCSEEEE-ET
T ss_pred cCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccc-----cccc-CCccEEEe-CC
Confidence 999999999765545789999999854 77888889999999999999875 5555443 4555 68999999 45
Q ss_pred CCcCch-hhhcCCCCCcEEEcCCCCCC-----CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCccc
Q psy4257 183 EIENLD-GALMGIHGLSRLDLSHNKLR-----TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256 (419)
Q Consensus 183 ~l~~~~-~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 256 (419)
.+..++ .+|.++.+|+.+++.+|.+. .+...+|.+|.+|+.++|. +.+..+...+|.++.+|+.+.|.+| ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 577774 67889999999999888765 6788899999999999999 5699999999999999999999655 77
Q ss_pred ccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecC-CcceeEEecCCc
Q psy4257 257 RLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL-NSTLRIYLEGNP 308 (419)
Q Consensus 257 ~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~~l~~l~l~~Np 308 (419)
.|+ .+|.++ +|+.+++.+|.+..+....+ .++ ..+..|++..+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F-------~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVW-------YGFPDDITVIRVPAES 381 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSC-------CCSCTTCCEEEECGGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccc-------cCCCCCccEEEeCHHH
Confidence 876 568899 99999999999888776543 334 356788887664
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=9.8e-18 Score=159.89 Aligned_cols=235 Identities=14% Similarity=0.225 Sum_probs=109.9
Q ss_pred ccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEcc
Q psy4257 27 KLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104 (419)
Q Consensus 27 ~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~ 104 (419)
+|+.+.|.++ ++.|+. +|.++ +|+.+.+.+ .+..|+ .+|.+|.+|+.+++.+|++..+...+|. +.+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555433 444432 23332 355555543 344443 3455555555555555555555555554 3455555554
Q ss_pred CCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCC
Q psy4257 105 NNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183 (419)
Q Consensus 105 ~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (419)
.+ +..|+ ..|.++.+|+.+++..+ +..+...+|.+ .+|+.+.+. +.+..++.. .|..+.+|+.+.+.++.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~-----aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR-----AFYYCPELAEVTTYGST 282 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT-----TTTTCTTCCEEEEESSC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChh-----HhhCCCCCCEEEeCCcc
Confidence 22 44442 34445555555555442 34444444444 445555552 233333222 44455555555554444
Q ss_pred Cc-----Cch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccc
Q psy4257 184 IE-----NLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 184 l~-----~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~ 257 (419)
+. .++ .+|.++.+|+.+++. +.+..+...+|.+|.+|+.++|..+ ++.+...+|.++ +|+.+++.+|.+..
T Consensus 283 ~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 283 FNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp CCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred ccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence 33 222 344455555555555 2344555555555555555555332 445555555555 55555555555544
Q ss_pred cC-ccCCCCC-CcCEEecCCCc
Q psy4257 258 LD-KDFHGLP-VLCKADLAHNN 277 (419)
Q Consensus 258 l~-~~~~~l~-~L~~L~L~~N~ 277 (419)
++ ..|.+++ .++.|.+..+.
T Consensus 360 l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 360 VFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCCSSCCCSCTTCCEEEECGGG
T ss_pred cccccccCCCCCccEEEeCHHH
Confidence 43 2344442 44455554443
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.77 E-value=5.6e-18 Score=142.11 Aligned_cols=123 Identities=24% Similarity=0.229 Sum_probs=80.9
Q ss_pred CcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCc-cCCCCCCcCEEecCC
Q psy4257 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAH 275 (419)
Q Consensus 197 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~-~~~~l~~L~~L~L~~ 275 (419)
.+.+++++|.++.++ ..+. .+|++|+|++|+|+++.+..|..+++|++|+|++|+|+.++. .|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip-~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccC-ccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345556666555552 2222 556666666666666655556666666666666666666653 345666666666666
Q ss_pred CcccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCCc
Q psy4257 276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNNT 329 (419)
Q Consensus 276 N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~~ 329 (419)
|+|+.++...+ ..+++|+.|++++|||.|+|. +.|+..|++......
T Consensus 88 N~l~~~~~~~~-------~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 88 NQLKSIPRGAF-------DNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp SCCCCCCTTTT-------TTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred CccCEeCHHHh-------cCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 66666665432 237788899999999999995 999999999855444
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.74 E-value=3.3e-17 Score=137.87 Aligned_cols=121 Identities=23% Similarity=0.295 Sum_probs=78.4
Q ss_pred cEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEecCCC
Q psy4257 198 SRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHN 276 (419)
Q Consensus 198 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~L~~N 276 (419)
+.+++++|.+..++ ..+. .+|++|+|++|+|.++++..|..+++|+.|+|++|+|+.++.. |..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~~iP-~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVP-AGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCC-SCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccC-CCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45555555555542 2222 4556666666666666555555666666666666666666533 456666666666666
Q ss_pred cccccchhhhhhcccceecCCcceeEEecCCccccccc-hHHHHHHHHhhcCC
Q psy4257 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDS-MRAVIDAMETINNN 328 (419)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~-~~~~~~~l~~~~~~ 328 (419)
+|+.++...+ ..+++|+.|++++|+|.|+|. +.|+..|++.....
T Consensus 92 ~l~~l~~~~~-------~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~ 137 (174)
T 2r9u_A 92 HLKSIPRGAF-------DNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSI 137 (174)
T ss_dssp CCCCCCTTTT-------TTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGG
T ss_pred ccceeCHHHh-------ccccCCCEEEeCCCCcccccccHHHHHHHHHhcccc
Confidence 6666665432 237788889999999999995 99999999875443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=6.8e-18 Score=141.36 Aligned_cols=135 Identities=20% Similarity=0.151 Sum_probs=117.8
Q ss_pred ccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 25 LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|++.+..+..+.++++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 578999999999998 8888888999999999999999988 6788899999999999999987677788899999999
Q ss_pred ccCCcCcccc--ccccCCccCcEEecccccccccCh---hhhcCCCCccEEEcCCCCCccccC
Q psy4257 103 LQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL---DDIRGLKRLRTVDLSYNKINKFGT 160 (419)
Q Consensus 103 L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~ 160 (419)
+++|.++.++ ..+..+++|++|++++|.+.+... ..+..+++|+.|++++|.+..++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999999876 678889999999999999988765 578889999999999998876653
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=8.1e-18 Score=140.93 Aligned_cols=133 Identities=25% Similarity=0.326 Sum_probs=121.7
Q ss_pred CCCCcEEeccccccc--ccccccccccccceeecccccCccCccccccccccceeecccccccC-chhhhcCCCCCCEEe
Q psy4257 2 LTDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFN 78 (419)
Q Consensus 2 l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~ 78 (419)
.++|++|++++|.++ .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. ++..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 367999999999998 8888788899999999999999988 778999999999999999998 788888899999999
Q ss_pred cCCCCCcccCh-hhhcCCCCCCEEEccCCcCccccc----cccCCccCcEEecccccccccC
Q psy4257 79 MDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNS----SLSGLTKLAYLYLSHNQLTEFL 135 (419)
Q Consensus 79 l~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~----~l~~l~~L~~L~l~~n~l~~~~ 135 (419)
+++|.+.++.. ..|..+++|++|++++|.++.++. .+..+++|++|++++|.+....
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 99999999854 789999999999999999998876 7899999999999999987653
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.7e-18 Score=177.56 Aligned_cols=153 Identities=20% Similarity=0.158 Sum_probs=77.1
Q ss_pred CCcEEeccccccccccccccccccccee-----ecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEe
Q psy4257 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLL-----VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN 78 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L-----~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~ 78 (419)
.++.|+|.+|.+...+..+.....|..+ ++..|.+...+..+..+..|+.|+|++|.+..++..+..+++|+.|+
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~ 253 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLY 253 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCB
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEE
Confidence 3566667666666544333222222222 22233333334556667777777777777777765566677777777
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
|++|.|..+ +..|.++++|++|+|++|.|+.+|..+..+++|++|+|++|.+..+ +..|..+++|+.|+|++|.+.+.
T Consensus 254 Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 254 LNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp CTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSH
T ss_pred eeCCcCccc-ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCC
Confidence 777777744 3556777777777777777777777777777777777777777653 44477777777777777776643
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=3.7e-17 Score=139.97 Aligned_cols=126 Identities=24% Similarity=0.396 Sum_probs=87.0
Q ss_pred ceeecccccCccCccccccccccceeecccccccCchh--hhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG--LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106 (419)
Q Consensus 29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 106 (419)
+.|++++++++.+|..+.. +|++|++++|.|..++. .|..+++|+.|++++|+|+++.+..|.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5667777777766654432 66777777777766653 3667777777777777777777777777777777777777
Q ss_pred cCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 107 QITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 107 ~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
+|+.++ ..|..+++|++|+|++|.+++..+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 777664 34666777777777777777766667777777777777777664
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=2.3e-18 Score=176.59 Aligned_cols=217 Identities=18% Similarity=0.139 Sum_probs=110.6
Q ss_pred ccccceeecccccCccCcccccccccccee-----ecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCC
Q psy4257 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSL-----YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 99 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L-----~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 99 (419)
.++++.|+|.+|.+..++..+.....|+.+ ++..|.+...+..|..+..|+.|+|++|.+..++... .++++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGG-GGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCC
Confidence 466888999999888776554333333333 3344555545677888999999999999999876654 4889999
Q ss_pred EEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEc
Q psy4257 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179 (419)
Q Consensus 100 ~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l 179 (419)
+|+|++|.|+.+|..|..+++|++|+|++|.++. ++..|..+++|++|+|++|.|..++. .+..+++|+.|+|
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~lp~------~~~~l~~L~~L~L 323 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLPW------EFGNLCNLQFLGV 323 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCCCS------STTSCTTCCCEEC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCccCh------hhhcCCCccEEeC
Confidence 9999999999999889999999999999999985 47788999999999999999886643 3778899999999
Q ss_pred CCCCCcCc-hhhhcCCC-CCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCC--------cCcccCchhccCCCCCceEe
Q psy4257 180 QHNEIENL-DGALMGIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN--------LLTTLEETSKTFLPALEELF 249 (419)
Q Consensus 180 ~~n~l~~~-~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--------~l~~~~~~~~~~l~~L~~L~ 249 (419)
++|.+... |..+..+. .+..|+|++|.+++..|. .|+.|+++.| .+.......+..+..+....
T Consensus 324 ~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 397 (727)
T 4b8c_D 324 EGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTV 397 (727)
T ss_dssp TTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-------------------------------------
T ss_pred CCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceee
Confidence 99999855 34443221 123467777877765543 3455556655 22222222333344445555
Q ss_pred CcCCcc
Q psy4257 250 VSHNSL 255 (419)
Q Consensus 250 L~~N~i 255 (419)
+++|-+
T Consensus 398 ls~Nil 403 (727)
T 4b8c_D 398 LSYNTL 403 (727)
T ss_dssp ----CC
T ss_pred eecccc
Confidence 555544
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=5.1e-17 Score=139.15 Aligned_cols=126 Identities=21% Similarity=0.364 Sum_probs=84.0
Q ss_pred ceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcC
Q psy4257 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108 (419)
Q Consensus 29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 108 (419)
+.++++++.++.+|..+. .+|++|++++|.|..+|..|.++++|+.|++++|+|+++.+..|.++++|++|+|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665442 466667777776666666666667777777777777776666677777777777777777
Q ss_pred cccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 109 TSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 109 ~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
+.++ ..|..+++|++|+|++|.+..+.+..|..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6664 34666667777777777766666556666667777777766654
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=2.6e-17 Score=134.90 Aligned_cols=127 Identities=23% Similarity=0.224 Sum_probs=106.1
Q ss_pred ccccceeecccccCc--cCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEE
Q psy4257 25 LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 102 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~--~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 102 (419)
.++|+.|++++|.++ .+|..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 578889999999888 7777788888899999998888888 6688888899999999998887677777888899999
Q ss_pred ccCCcCcccc--ccccCCccCcEEecccccccccCh---hhhcCCCCccEEEcCC
Q psy4257 103 LQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL---DDIRGLKRLRTVDLSY 152 (419)
Q Consensus 103 L~~n~l~~i~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~ 152 (419)
+++|.++.++ ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999888765 678888889999999888887765 5678888888888763
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=2.4e-17 Score=139.12 Aligned_cols=135 Identities=20% Similarity=0.261 Sum_probs=111.5
Q ss_pred ccccccccceeecccccCccCcccccccc-ccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCC
Q psy4257 21 QLGTLSKLQLLVIEQNQLEALPSDIQLFS-QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 99 (419)
Q Consensus 21 ~~~~~~~L~~L~L~~n~l~~i~~~~~~~~-~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 99 (419)
.+..+.+|+.|++++|+++.++. +..+. +|+.|++++|.|..+ ..+..+++|+.|++++|+|.++++..|..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 35568889999999999998854 44444 899999999999888 5688889999999999999988877778899999
Q ss_pred EEEccCCcCccccc--cccCCccCcEEecccccccccChh---hhcCCCCccEEEcCCCCCcc
Q psy4257 100 SISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLD---DIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 100 ~L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~ 157 (419)
+|++++|+|..+|. .+..+++|+.|++++|.+...... .+..+++|+.|++++|.+..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999999988876 788888999999999998865433 47788888888888887654
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=3.9e-17 Score=133.81 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=114.2
Q ss_pred CCCcEEeccccccc--ccccccccccccceeecccccCccCccccccccccceeecccccccC-chhhhcCCCCCCEEec
Q psy4257 3 TDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNM 79 (419)
Q Consensus 3 ~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~-l~~~~~~l~~L~~L~l 79 (419)
++|++|++++|.++ .++..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 57999999999998 7888788899999999999999988 778999999999999999998 8888888999999999
Q ss_pred CCCCCcccC-hhhhcCCCCCCEEEccCCcCccccc----cccCCccCcEEeccc
Q psy4257 80 DFNQITMVR-RDEFQNLHNLDSISLQNNQITSMNS----SLSGLTKLAYLYLSH 128 (419)
Q Consensus 80 ~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~i~~----~l~~l~~L~~L~l~~ 128 (419)
++|++.++. +..+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999874 4789999999999999999998865 688899999999864
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.1e-16 Score=135.15 Aligned_cols=130 Identities=22% Similarity=0.339 Sum_probs=115.7
Q ss_pred CCCCcEEecccccccccccccccc-cccceeecccccCccCccccccccccceeecccccccCch-hhhcCCCCCCEEec
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTL-SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNM 79 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~-~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l 79 (419)
+.+|++|++++|.++.++. +..+ ++|+.|++++|.|+.+ ..+..+++|+.|++++|.|..++ ..|..+++|+.|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 5789999999999998865 5554 4999999999999988 67899999999999999999987 45589999999999
Q ss_pred CCCCCcccCh-hhhcCCCCCCEEEccCCcCcccccc----ccCCccCcEEecccccccc
Q psy4257 80 DFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSS----LSGLTKLAYLYLSHNQLTE 133 (419)
Q Consensus 80 ~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~~----l~~l~~L~~L~l~~n~l~~ 133 (419)
++|+|..++. ..+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.+..
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999988764 4789999999999999999998764 8899999999999998765
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=2.2e-15 Score=127.14 Aligned_cols=88 Identities=27% Similarity=0.342 Sum_probs=44.3
Q ss_pred CCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccCcc-CCCCCCcCEEe
Q psy4257 194 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKAD 272 (419)
Q Consensus 194 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~~~-~~~l~~L~~L~ 272 (419)
+++|++|++++|.++++.+..|..+++|++|+|++|++++++...|..+++|+.|+|++|+++.++.. |..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 34444444444444444444444455555555555555555444444455555555555555555432 34555566666
Q ss_pred cCCCccccc
Q psy4257 273 LAHNNIKAI 281 (419)
Q Consensus 273 L~~N~l~~~ 281 (419)
+++|.+...
T Consensus 131 l~~N~~~~~ 139 (177)
T 2o6r_A 131 LHTNPWDCS 139 (177)
T ss_dssp CCSSCBCCC
T ss_pred ecCCCeecc
Confidence 666655543
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.64 E-value=1.5e-15 Score=142.43 Aligned_cols=131 Identities=22% Similarity=0.320 Sum_probs=77.3
Q ss_pred EEcCCC-CCCCcCcccCCCCCCCcEEEccC-CcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCC
Q psy4257 200 LDLSHN-KLRTISPDDFIGLDSLKMLDISH-NLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN 276 (419)
Q Consensus 200 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N 276 (419)
++++++ .++.+ |. |..+.+|+.|+|++ |.|..+++..|..+++|+.|+|++|+|++++ ..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 45544 22 55555555555553 5555555555555555555555555555544 23455556666666666
Q ss_pred cccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHhhcCCceeccccCCCCCC
Q psy4257 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDS 341 (419)
Q Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~~~~~~~~~~~~~c~~~~ 341 (419)
+|+.++...+. .+. |+.|+|.+|+|.|+|.+.||..|++...... ..+...|..+.
T Consensus 91 ~l~~~~~~~~~-------~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l-~~~~~~C~~~~ 146 (347)
T 2ifg_A 91 ALESLSWKTVQ-------GLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGV-PEQKLQCHGQG 146 (347)
T ss_dssp CCSCCCSTTTC-------SCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSC-GGGCCCCSSSS
T ss_pred ccceeCHHHcc-------cCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccc-cccCCCCCCCh
Confidence 66655544332 123 7889999999999999999999998742221 23555675443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=9.8e-18 Score=144.41 Aligned_cols=111 Identities=27% Similarity=0.354 Sum_probs=68.0
Q ss_pred ccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257 21 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100 (419)
Q Consensus 21 ~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 100 (419)
.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|..+..+++|+.|++++|++.+++ .+..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--ccccCCCCCE
Confidence 4555666666666666666665 566666666666666666666655555566666666666666542 4555666666
Q ss_pred EEccCCcCccccc--cccCCccCcEEeccccccccc
Q psy4257 101 ISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEF 134 (419)
Q Consensus 101 L~L~~n~l~~i~~--~l~~l~~L~~L~l~~n~l~~~ 134 (419)
|++++|+++.++. .+..+++|++|++++|.+.+.
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 6666666665542 455666666666666665543
No 141
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=4.2e-14 Score=134.98 Aligned_cols=270 Identities=14% Similarity=0.206 Sum_probs=142.1
Q ss_pred ccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCC----------------
Q psy4257 21 QLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFN---------------- 82 (419)
Q Consensus 21 ~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n---------------- 82 (419)
+|..|.+|+.+.|.. .++.|.. +|.++.+|+.+++.++ +..|+ .+|.++.+|+.+.+..+
T Consensus 66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 344455555555542 2444432 3555555555555433 33332 34444444444433221
Q ss_pred -----CCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCc
Q psy4257 83 -----QITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 83 -----~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
.+..+...+|.++.+|+.+.+.++ +..++ ..|.++.+|+.+.+..+ +..+....|.++..|+.+.+..+...
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 223344455666666666666543 23332 34556666666666554 34444455555555555555433211
Q ss_pred cccC----------------CCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCC
Q psy4257 157 KFGT----------------RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 220 (419)
Q Consensus 157 ~~~~----------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 220 (419)
.-.. .......+..+..++.+.+..+...--...|..+..++.+.+..+. +...+|..+.+
T Consensus 222 i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~ 298 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSS 298 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTT
T ss_pred eehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccccccccc
Confidence 0000 0001123444555555555544322112334445555555544432 23345666777
Q ss_pred CcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcc
Q psy4257 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST 299 (419)
Q Consensus 221 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l 299 (419)
|+.+.+..+ +..+...+|.++.+|+.++|.++ ++.|+ .+|.++.+|+.+++..+ ++.|+... +.++.+|
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-------F~~C~~L 368 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA-------FQGCINL 368 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT-------BTTCTTC
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH-------hhCCCCC
Confidence 777777644 66777777777777887777643 66665 45777777887777665 66666553 3446777
Q ss_pred eeEEecCC
Q psy4257 300 LRIYLEGN 307 (419)
Q Consensus 300 ~~l~l~~N 307 (419)
+.+.+..+
T Consensus 369 ~~i~lp~~ 376 (394)
T 4fs7_A 369 KKVELPKR 376 (394)
T ss_dssp CEEEEEGG
T ss_pred CEEEECCC
Confidence 77777543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1.5e-14 Score=121.03 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=96.4
Q ss_pred cccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcC
Q psy4257 173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSH 252 (419)
Q Consensus 173 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 252 (419)
..+.|++++|.++.+|..+ ..+|++|+|++|.|+++.+..|.++++|++|+|++|+|+.++...|..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3567888888888887655 37899999999999999999999999999999999999999998899999999999999
Q ss_pred CcccccCc-cCCCCCCcCEEecCCCcccccch
Q psy4257 253 NSLTRLDK-DFHGLPVLCKADLAHNNIKAINI 283 (419)
Q Consensus 253 N~i~~l~~-~~~~l~~L~~L~L~~N~l~~~~~ 283 (419)
|+|+.++. .|..+++|+.|+|++|.+.....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 99999985 58899999999999999986543
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.56 E-value=1.8e-13 Score=130.60 Aligned_cols=278 Identities=15% Similarity=0.214 Sum_probs=197.4
Q ss_pred CCCCCcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeeccccc------------------
Q psy4257 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNR------------------ 60 (419)
Q Consensus 1 ~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~------------------ 60 (419)
++.+|+.+.+.. .++.+. ..|..|.+|+.++|.++ ++.|+. .|.++.+|+.+.+..+-
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 467899999974 477775 46777999999999754 666644 57788888877665331
Q ss_pred ---ccCc-hhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc-----
Q psy4257 61 ---ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ----- 130 (419)
Q Consensus 61 ---i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~----- 130 (419)
+..+ ..+|.++.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+. ..|..+..|+.+.+..+.
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~ 224 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGD 224 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECT
T ss_pred CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeeh
Confidence 1112 246788899999999754 56788888999999999988765 55443 345566666665554432
Q ss_pred ----------------ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCC
Q psy4257 131 ----------------LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGI 194 (419)
Q Consensus 131 ----------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l 194 (419)
+..+....|..+..|+.+.+..+... +. ...+..+..++.+.+....+. ...+..+
T Consensus 225 ~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~-----~~~F~~~~~l~~~~~~~~~i~--~~~F~~~ 296 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IG-----GSLFYNCSGLKKVIYGSVIVP--EKTFYGC 296 (394)
T ss_dssp TTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-EC-----SCTTTTCTTCCEEEECSSEEC--TTTTTTC
T ss_pred hhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-ee-----ccccccccccceeccCceeec--ccccccc
Confidence 12223345566667777777655332 22 235677788888877765433 2467788
Q ss_pred CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEec
Q psy4257 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADL 273 (419)
Q Consensus 195 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L 273 (419)
.+|+.+.+..+ +..+...+|.++.+|+.++|.. .++.+...+|.++.+|+.+.+..+ ++.|+ .+|.+|.+|+.+++
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 99999999765 8888889999999999999975 488999999999999999999877 88887 57999999999999
Q ss_pred CCCcccccchhhhhhcccceecCCcceeE
Q psy4257 274 AHNNIKAINIQLALKTQCQIFGLNSTLRI 302 (419)
Q Consensus 274 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~l 302 (419)
..+ ++.+.. .+.++.+|+.+
T Consensus 374 p~~-~~~~~~--------~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR-LEQYRY--------DFEDTTKFKWI 393 (394)
T ss_dssp EGG-GGGGGG--------GBCTTCEEEEE
T ss_pred CCC-CEEhhh--------eecCCCCCcEE
Confidence 754 443321 24445666554
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=6.6e-13 Score=126.70 Aligned_cols=287 Identities=14% Similarity=0.176 Sum_probs=146.0
Q ss_pred CcEEecccccccccc-cccccccccceeeccccc---CccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEe
Q psy4257 5 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQ---LEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFN 78 (419)
Q Consensus 5 L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~---l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~ 78 (419)
|+.+.+..+ ++.+. ..|..|.+|+.+.+..+. ++.|.. .|..+.+|+.+.+.++ +..++ .+|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555432 44443 344556666666665543 444432 3555666666555433 33343 4556666666666
Q ss_pred cCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccc
Q psy4257 79 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 79 l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
+.. .+..+...+|.++..|+.+.+.++ +..|........+|+.+.+..+. .......|..+..+.......+.....
T Consensus 144 lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPE-GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred ccc-eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcc-cccccchhhhccccceecccccccccc
Confidence 643 345555566666666666666543 44443322223456666655432 233444555666666655544433222
Q ss_pred cCCCCCCC--------cccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCC
Q psy4257 159 GTRNEGKN--------QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229 (419)
Q Consensus 159 ~~~~~~~~--------~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 229 (419)
........ .+.....+..+.+.. .+..+ ..+|.++..|+.+.+..+ +..+...+|.++..|+.+.+. +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~ 297 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-S 297 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-T
T ss_pred cceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-C
Confidence 11000000 000111122222211 11122 134556666666666543 334555666666677776664 4
Q ss_pred cCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCc
Q psy4257 230 LLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308 (419)
Q Consensus 230 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np 308 (419)
.+..+...+|.++.+|+.+.|.++ ++.|. .+|.+|.+|+.+.|..+ ++.|....+ .++.+|+.+++.++.
T Consensus 298 ~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF-------~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 298 RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF-------SNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG-------TTCTTCCEEEESSCH
T ss_pred cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh-------hCCCCCCEEEECCce
Confidence 566666666666667777766643 55554 45666677777766433 566655433 345666666666654
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=7.1e-16 Score=132.69 Aligned_cols=122 Identities=24% Similarity=0.340 Sum_probs=106.9
Q ss_pred CCCCcEEecccccccccccccccccccceeecccccCccCccccccccccceeecccccccCchhhhcCCCCCCEEecCC
Q psy4257 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 81 (419)
Q Consensus 2 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l~~~~~~l~~L~~L~l~~ 81 (419)
+++|++|++++|.++.++ .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..++ .+..+++|+.|++++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCC
Confidence 678999999999999988 788899999999999999999988888899999999999999998 588899999999999
Q ss_pred CCCcccCh-hhhcCCCCCCEEEccCCcCccccc-----------cccCCccCcEEe
Q psy4257 82 NQITMVRR-DEFQNLHNLDSISLQNNQITSMNS-----------SLSGLTKLAYLY 125 (419)
Q Consensus 82 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~i~~-----------~l~~l~~L~~L~ 125 (419)
|++..+.. ..+..+++|++|++++|.+..... .+..+++|+.|+
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99998765 678999999999999999875522 255566666665
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=7.8e-14 Score=117.12 Aligned_cols=102 Identities=27% Similarity=0.485 Sum_probs=51.8
Q ss_pred ceeecccccCccCccccccccccceeecccccccCc-hhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCc
Q psy4257 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107 (419)
Q Consensus 29 ~~L~L~~n~l~~i~~~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 107 (419)
+.+++++|+++.+|..+. .+|+.|+|++|.|.++ +..|.++++|+.|+|++|+|.++++..|.++++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555554432 4455555555555554 3344555555555555555555554445555555555555555
Q ss_pred Ccccccc-ccCCccCcEEeccccccc
Q psy4257 108 ITSMNSS-LSGLTKLAYLYLSHNQLT 132 (419)
Q Consensus 108 l~~i~~~-l~~l~~L~~L~l~~n~l~ 132 (419)
|+.++.. |..+++|++|+|++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 5544432 444555555555555444
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.47 E-value=4.1e-12 Score=121.20 Aligned_cols=284 Identities=14% Similarity=0.196 Sum_probs=194.1
Q ss_pred CCCCCcEEeccccc---ccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCc-hhhhcCCCCC
Q psy4257 1 GLTDLNWLFLNNNR---LKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKL 74 (419)
Q Consensus 1 ~l~~L~~L~l~~n~---l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l-~~~~~~l~~L 74 (419)
++.+|+.+.+..+. ++.+. ..|..+.+|+.+.+.++ ++.+.. .|..+.+|+.+.+..+ +..+ ..+|.++..|
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSL 162 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccccc
Confidence 46789999998875 66665 45677999999888654 666654 5889999999999754 4445 4678899999
Q ss_pred CEEecCCCCCcccChhhhcCCCCCCEEEccCCcCccccccccCCccCcEEecccccccccChhhh-------------cC
Q psy4257 75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-------------RG 141 (419)
Q Consensus 75 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~~~l~~l~~L~~L~l~~n~l~~~~~~~~-------------~~ 141 (419)
+.+.+..+ +..+...+|.+ ..|+.+.+..+-..--...+..+.++.......+.........+ ..
T Consensus 163 ~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (394)
T 4gt6_A 163 HTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS 240 (394)
T ss_dssp CEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT
T ss_pred ccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccccccccccceeeccccccccccccccc
Confidence 99999764 78888888875 57999988765333223567777778777665544332111111 11
Q ss_pred CCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCC
Q psy4257 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221 (419)
Q Consensus 142 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 221 (419)
...+..+.+.. .+..+. ...|..+..|+.+.+..+...--..+|.++..|+.+.+. +.+..+...+|.++.+|
T Consensus 241 ~~~~~~~~ip~-~v~~i~-----~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L 313 (394)
T 4gt6_A 241 QREDPAFKIPN-GVARIE-----THAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISL 313 (394)
T ss_dssp TCCCSEEECCT-TEEEEC-----TTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTC
T ss_pred ccccceEEcCC-cceEcc-----cceeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCc
Confidence 22233333322 222222 236778888999988766443223677888899999996 56778888899999999
Q ss_pred cEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcce
Q psy4257 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300 (419)
Q Consensus 222 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~ 300 (419)
+.++|..+ ++.+...+|.++.+|+.+.+..+ ++.|+ .+|.+|.+|+.+++.++.... . .+.....|+
T Consensus 314 ~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~-------~~~~~~~L~ 381 (394)
T 4gt6_A 314 KSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---N-------AISTDSGLQ 381 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---H-------TCBCCCCC-
T ss_pred CEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---h-------hhhccCCCC
Confidence 99999754 88888889999999999999754 77776 568999999999998875431 1 233456677
Q ss_pred eEEecCC
Q psy4257 301 RIYLEGN 307 (419)
Q Consensus 301 ~l~l~~N 307 (419)
.+.+..|
T Consensus 382 ~i~i~~~ 388 (394)
T 4gt6_A 382 NLPVAPG 388 (394)
T ss_dssp -------
T ss_pred EEEeCCC
Confidence 7776654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.5e-14 Score=136.55 Aligned_cols=162 Identities=22% Similarity=0.238 Sum_probs=85.0
Q ss_pred CCCCEEecCCCCCcccChhhhcCC-----CCCCEEEccCCcCccc--cccccCCccCcEEecccccccccChhhh-----
Q psy4257 72 TKLQVFNMDFNQITMVRRDEFQNL-----HNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDI----- 139 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~i--~~~l~~l~~L~~L~l~~n~l~~~~~~~~----- 139 (419)
+.|+.|++++|.+.......|..+ .+|++|+|++|.|+.. ......+++|+.|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567777777777766544443322 5677777777766532 1122334456666666666654433333
Q ss_pred cCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCchhhhcCCCCCcEEEcCCCCCCCcC----cccC
Q psy4257 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS----PDDF 215 (419)
Q Consensus 140 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~ 215 (419)
...++|+.|+|++|.|...... .++..+..+++|++|+|++|.|+... ...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~------------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA------------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH------------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred hcCCccceeeCCCCCCChHHHH------------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 2345556666665555432110 12233445555666666666654322 2334
Q ss_pred CCCCCCcEEEccCCcCcccCchh----ccCCCCCceEeCcCCcccc
Q psy4257 216 IGLDSLKMLDISHNLLTTLEETS----KTFLPALEELFVSHNSLTR 257 (419)
Q Consensus 216 ~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~ 257 (419)
...++|++|+|++|.|++..... +...++|++|+|++|.|..
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 44556666666666665433222 2234566666666666654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=1.1e-14 Score=137.32 Aligned_cols=132 Identities=20% Similarity=0.206 Sum_probs=86.1
Q ss_pred ccccceeecccccCc----cCccccccccccceeecccccccCch-----hhhc-CCCCCCEEecCCCCCcccChhhh-c
Q psy4257 25 LSKLQLLVIEQNQLE----ALPSDIQLFSQLGSLYANNNRITSLD-----GLLR-GLTKLQVFNMDFNQITMVRRDEF-Q 93 (419)
Q Consensus 25 ~~~L~~L~L~~n~l~----~i~~~~~~~~~L~~L~l~~n~i~~l~-----~~~~-~l~~L~~L~l~~n~l~~~~~~~~-~ 93 (419)
++..+.+++.+|-.. .++. ..+..|+.|++++|.|.... ..+. ...+|+.|+|++|.+.......+ .
T Consensus 46 ~~~~~~lnl~~cl~e~~~~~l~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 123 (372)
T 3un9_A 46 LPPSELLDHLFFHYEFQNQRFSA--EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123 (372)
T ss_dssp SCHHHHHHHHHHHHHHHTHHHHH--HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH
T ss_pred CChhhhHHHHHHHHHhcCHHHHH--HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH
Confidence 444555666555322 1222 23467888888888887532 2333 23688889999888876544333 2
Q ss_pred CCCCCCEEEccCCcCcccc-----ccc-cCCccCcEEecccccccccC----hhhhcCCCCccEEEcCCCCCccc
Q psy4257 94 NLHNLDSISLQNNQITSMN-----SSL-SGLTKLAYLYLSHNQLTEFL----LDDIRGLKRLRTVDLSYNKINKF 158 (419)
Q Consensus 94 ~~~~L~~L~L~~n~l~~i~-----~~l-~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~ 158 (419)
.+.+|+.|+|++|.|+... ..+ ...++|+.|+|++|.++... ...+..+++|++|+|++|.|...
T Consensus 124 ~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~ 198 (372)
T 3un9_A 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198 (372)
T ss_dssp HHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH
T ss_pred HHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH
Confidence 3567889999998887432 222 34678999999999887543 33446788899999999988754
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=4.7e-12 Score=118.62 Aligned_cols=103 Identities=25% Similarity=0.290 Sum_probs=65.2
Q ss_pred eeecccc-cCccCccccccccccceeeccc-ccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC
Q psy4257 30 LLVIEQN-QLEALPSDIQLFSQLGSLYANN-NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106 (419)
Q Consensus 30 ~L~L~~n-~l~~i~~~~~~~~~L~~L~l~~-n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 106 (419)
.++++++ .++.||. +..+.+|+.|+|++ |.|..++ ..|.++++|+.|+|++|+|.++.+..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3566665 6666666 66666666666664 6666664 45666667777777777777666666666667777777777
Q ss_pred cCccccccccCCccCcEEecccccccc
Q psy4257 107 QITSMNSSLSGLTKLAYLYLSHNQLTE 133 (419)
Q Consensus 107 ~l~~i~~~l~~l~~L~~L~l~~n~l~~ 133 (419)
+|+.+|..+.....|+.|+|.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 666665433222236666666666553
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=2e-10 Score=108.82 Aligned_cols=264 Identities=14% Similarity=0.196 Sum_probs=149.4
Q ss_pred ccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCE
Q psy4257 23 GTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 100 (419)
Q Consensus 23 ~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 100 (419)
....+|+.+.+.. .++.|++ +|.++.+|+.+++..+ ++.|+ .+|.++ +|+.+.+.. .+..+...+|.++ +|+.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~ 117 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDD 117 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSE
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Cccc
Confidence 3356677777753 4666654 5777888888888644 66664 566665 566666653 4666767777665 6777
Q ss_pred EEccCCcCccccc-cccCCccCcEEecccccccccChhhhcCCCCccEEEcCCCCCccccC-------------------
Q psy4257 101 ISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT------------------- 160 (419)
Q Consensus 101 L~L~~n~l~~i~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------- 160 (419)
+.+..+ +..+.. .|.. .+|+.+.+..+ +..+....|..+.+++.+.+..+.......
T Consensus 118 i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 118 FEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred ccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 777653 333322 2222 24444444322 233333445555555555544332111000
Q ss_pred -----------CCCCCCcccCcccccEEEcCCCCCcCc-hhhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccC
Q psy4257 161 -----------RNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228 (419)
Q Consensus 161 -----------~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 228 (419)
.......+....+|+.+.+..+ +..+ ..++.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..
T Consensus 195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 0001112334455566655443 2222 244566667777777654 5666666777777777777754
Q ss_pred CcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEec
Q psy4257 229 NLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE 305 (419)
Q Consensus 229 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~ 305 (419)
.+..+...+|.++.+|+.+.+.++.++.|+ .+|.++.+|+.++|..+ ++.|....+ .++.+|+.+.+.
T Consensus 273 -~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF-------~~C~~L~~i~ip 341 (379)
T 4h09_A 273 -KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF-------KNCKALSTISYP 341 (379)
T ss_dssp -CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT-------TTCTTCCCCCCC
T ss_pred -cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh-------hCCCCCCEEEEC
Confidence 366666667777777777777777777765 45777777777777543 666665533 235556555553
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=2.8e-10 Score=107.77 Aligned_cols=266 Identities=14% Similarity=0.185 Sum_probs=174.2
Q ss_pred CCcEEecccccccccc-cccccccccceeecccccCccCcc-ccccccccceeecccccccCch-hhhcCCCCCCEEecC
Q psy4257 4 DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD 80 (419)
Q Consensus 4 ~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~L~~n~l~~i~~-~~~~~~~L~~L~l~~n~i~~l~-~~~~~l~~L~~L~l~ 80 (419)
+|+.+.+.. .++.++ ..|..|.+|+.++|..+ ++.|.. +|.++ +|+.+.+..+ +..|. .+|.++ +|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCC
Confidence 566666653 356665 45777889999998644 677754 46665 5777766543 55554 345443 67777776
Q ss_pred CCCCcccChhhhcCCCCCCEEEccCCcCcccc-ccccCCccCcEEeccccc-----------------------------
Q psy4257 81 FNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQ----------------------------- 130 (419)
Q Consensus 81 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~~l~~l~~L~~L~l~~n~----------------------------- 130 (419)
.+ +..+...+|.++ +|+.+.+-.+ ++.+. ..+..+.+++.+.+..+.
T Consensus 122 ~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 122 GA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp TT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred Cc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 53 444444455444 3444433322 22221 223333333333322211
Q ss_pred ------ccccChhhhcCCCCccEEEcCCCCCccccCCCCCCCcccCcccccEEEcCCCCCcCch-hhhcCCCCCcEEEcC
Q psy4257 131 ------LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS 203 (419)
Q Consensus 131 ------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~l~~L~~L~Ls 203 (419)
........+....+|+.+.+..+ +..+. ...+..+..|+.+.+..+ ++.+. .+|.++.+|+.+.+.
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~-----~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~ 271 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLG-----DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFY 271 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEEC-----TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEc-----cccccCCccceEEEcCCC-ccEeCccccceeehhcccccc
Confidence 11223345555667777777544 33332 235777889999999776 55564 567788899999996
Q ss_pred CCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcccccC-ccCCCCCCcCEEecCCCcccccc
Q psy4257 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNIKAIN 282 (419)
Q Consensus 204 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~l~-~~~~~l~~L~~L~L~~N~l~~~~ 282 (419)
. .+..+...+|.++.+|+.+.+.++.++.+...+|.++.+|+.+.|.++ ++.|+ .+|.+|.+|+.+.+..+ ++.|.
T Consensus 272 ~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 272 A-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp C-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred c-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 5 477787889999999999999999999999999999999999999765 78887 57999999999999654 77777
Q ss_pred hhhhh
Q psy4257 283 IQLAL 287 (419)
Q Consensus 283 ~~~~~ 287 (419)
...+.
T Consensus 349 ~~aF~ 353 (379)
T 4h09_A 349 SGAFE 353 (379)
T ss_dssp TTTTT
T ss_pred hhHhh
Confidence 66543
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=99.18 E-value=8.8e-11 Score=92.92 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=62.8
Q ss_pred eEeCcCCccc--ccCccCCCCCCcCEEecCCCcccccchhhhhhcccceecCCcceeEEecCCccccccchHHHHHHHHh
Q psy4257 247 ELFVSHNSLT--RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMET 324 (419)
Q Consensus 247 ~L~L~~N~i~--~l~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~l~~l~l~~Np~~c~~~~~~~~~~l~~ 324 (419)
.++.++++++ .+|..+ -.+|+.|+|++|+|+.++...+. .+++|+.|+|.+|||.|||.+.||..|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~-------~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~ 82 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLD-------ALPALRTAHLGANPWRCDCRLVPLRAWLAG 82 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGG-------GCTTCCEEECCSSCCBCSGGGHHHHHHHHT
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhh-------hccccCEEEecCCCeeccCccHHHHHHHHh
Confidence 5667777776 666432 23577888888888888776543 478899999999999999999999999987
Q ss_pred hcCCceeccccCCCCCCC
Q psy4257 325 INNNTKIHGETICQPDSN 342 (419)
Q Consensus 325 ~~~~~~~~~~~~c~~~~~ 342 (419)
..... ......|..+..
T Consensus 83 ~~~~~-~~~~~~C~~P~~ 99 (130)
T 3rfe_A 83 RPERA-PYRDLRCVAPPA 99 (130)
T ss_dssp SSCSG-GGTTCBCCBSTT
T ss_pred Ccccc-cccCcEeCcChH
Confidence 54322 245567865543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=6e-11 Score=111.01 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=67.7
Q ss_pred cccccccceeecccccc----------cCchhhhcCCCCCCEEecCCCCCcccChhhhcCCCCCCEEEccCCcCcccc-c
Q psy4257 45 IQLFSQLGSLYANNNRI----------TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-S 113 (419)
Q Consensus 45 ~~~~~~L~~L~l~~n~i----------~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~i~-~ 113 (419)
+..+++|+.|.+.+... ..+...+..+++|+.|++++|.-..+.+ +. +++|++|+|..+.+..-. .
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHH
Confidence 45566777777754422 1355667788889999988873122222 33 778999999888776321 2
Q ss_pred cc--cCCccCcEEeccc--cccccc-----Chhhh--cCCCCccEEEcCCCCCcc
Q psy4257 114 SL--SGLTKLAYLYLSH--NQLTEF-----LLDDI--RGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 114 ~l--~~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l~~ 157 (419)
.+ ..+++|+.|+|+. |...+. ....+ ..+++|+.|++++|.+..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~ 266 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHH
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCch
Confidence 22 3678888888753 221111 11122 247899999999888764
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=4.9e-10 Score=104.81 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=62.0
Q ss_pred ccceeecccccccC---------chhhhcCCCCCCEEecCCCCCcc---------cChhhhcCCCCCCEEEccCCcCccc
Q psy4257 50 QLGSLYANNNRITS---------LDGLLRGLTKLQVFNMDFNQITM---------VRRDEFQNLHNLDSISLQNNQITSM 111 (419)
Q Consensus 50 ~L~~L~l~~n~i~~---------l~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~~L~~L~L~~n~l~~i 111 (419)
.++.|.+....+.+ +..+...+++|+.|.+....... -....+..+++|+.|.|++|.-..+
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 45566666444331 22234556788888886543211 1234556778899999988732234
Q ss_pred cccccCCccCcEEecccccccccChhhhc--CCCCccEEEcCC
Q psy4257 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIR--GLKRLRTVDLSY 152 (419)
Q Consensus 112 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~ 152 (419)
+. + .+++|+.|+|..+.+.......+. .+++|+.|+|+.
T Consensus 188 ~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 188 GK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred cc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 33 3 367888888888877654444443 678888888753
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.81 E-value=2e-09 Score=91.01 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=68.1
Q ss_pred cccccccceeecccc-cccC-----chhhhcCCCCCCEEecCCCCCcccCh----hhhcCCCCCCEEEccCCcCcc----
Q psy4257 45 IQLFSQLGSLYANNN-RITS-----LDGLLRGLTKLQVFNMDFNQITMVRR----DEFQNLHNLDSISLQNNQITS---- 110 (419)
Q Consensus 45 ~~~~~~L~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~---- 110 (419)
+...+.|++|+|++| .|.. +...+...++|++|+|++|.|..... ..+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 445556666666666 5553 33445556667777777776654332 233444667777777776663
Q ss_pred -ccccccCCccCcEEec--ccccccccC----hhhhcCCCCccEEEcCCCCCcc
Q psy4257 111 -MNSSLSGLTKLAYLYL--SHNQLTEFL----LDDIRGLKRLRTVDLSYNKINK 157 (419)
Q Consensus 111 -i~~~l~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~ 157 (419)
+...+...++|++|+| ++|.+.... ...+...+.|+.|+|++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3455666667777777 667776542 2344455777888887777653
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.78 E-value=3e-09 Score=89.86 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=90.5
Q ss_pred cccccccccceeecccc-cCcc-----CccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccC
Q psy4257 20 GQLGTLSKLQLLVIEQN-QLEA-----LPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVR 88 (419)
Q Consensus 20 ~~~~~~~~L~~L~L~~n-~l~~-----i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~ 88 (419)
..+...+.|+.|+|++| .|.. +...+...++|++|+|++|.|.. +...+...+.|+.|+|++|.|....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555889999999999 8872 44456778899999999999875 4456777789999999999998754
Q ss_pred ----hhhhcCCCCCCEEEc--cCCcCcc-----ccccccCCccCcEEecccccccc
Q psy4257 89 ----RDEFQNLHNLDSISL--QNNQITS-----MNSSLSGLTKLAYLYLSHNQLTE 133 (419)
Q Consensus 89 ----~~~~~~~~~L~~L~L--~~n~l~~-----i~~~l~~l~~L~~L~l~~n~l~~ 133 (419)
..++.....|++|+| ++|.|.. +...+...++|++|+|++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 345667789999999 8899884 44566777899999999998764
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=6.8e-08 Score=85.79 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=62.1
Q ss_pred ccccccce--eecccccccCchh----hhcCCCCCCEEecCCCCCcccCh--hhhcCCCCCCEEEccCCcCccccccccC
Q psy4257 46 QLFSQLGS--LYANNNRITSLDG----LLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSG 117 (419)
Q Consensus 46 ~~~~~L~~--L~l~~n~i~~l~~----~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~L~~n~l~~i~~~l~~ 117 (419)
...+.|+. ++++.|....++. ....+++|+.|+|++|+|.++.. ..+..+++|+.|+|++|+|..+ ..+..
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~ 216 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDK 216 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhh
Confidence 33344444 5556664443332 22456778888888888777543 4556777888888888877766 22333
Q ss_pred Cc--cCcEEecccccccccCh-------hhhcCCCCccEEE
Q psy4257 118 LT--KLAYLYLSHNQLTEFLL-------DDIRGLKRLRTVD 149 (419)
Q Consensus 118 l~--~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~ 149 (419)
+. +|++|+|++|.+.+..+ ..+..+++|+.||
T Consensus 217 l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33 77777777777765322 2345566666665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=1e-07 Score=84.58 Aligned_cols=101 Identities=22% Similarity=0.296 Sum_probs=74.1
Q ss_pred ccccce--eecccccCccCccc----cccccccceeecccccccCch---hhhcCCCCCCEEecCCCCCcccC-hhhhcC
Q psy4257 25 LSKLQL--LVIEQNQLEALPSD----IQLFSQLGSLYANNNRITSLD---GLLRGLTKLQVFNMDFNQITMVR-RDEFQN 94 (419)
Q Consensus 25 ~~~L~~--L~L~~n~l~~i~~~----~~~~~~L~~L~l~~n~i~~l~---~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~ 94 (419)
.+.|+. ++++.|....++.. ...+++|+.|+|++|.|.+++ ..+..+++|+.|+|++|+|.++. ...+..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 219 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence 445554 66666654433322 256789999999999999865 56678999999999999999872 233444
Q ss_pred CCCCCEEEccCCcCcc-cc-------ccccCCccCcEEec
Q psy4257 95 LHNLDSISLQNNQITS-MN-------SSLSGLTKLAYLYL 126 (419)
Q Consensus 95 ~~~L~~L~L~~n~l~~-i~-------~~l~~l~~L~~L~l 126 (419)
+ +|++|+|++|.+.. +| ..+..+++|+.||-
T Consensus 220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred C-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 4 99999999999873 32 34678899998873
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=1.1e-06 Score=72.43 Aligned_cols=83 Identities=18% Similarity=0.149 Sum_probs=46.9
Q ss_pred CCCCEEecCCCCCcccChhhhcCCCCCCEEEccCC-cCcccc-ccccCC----ccCcEEeccccc-ccccChhhhcCCCC
Q psy4257 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN-QITSMN-SSLSGL----TKLAYLYLSHNQ-LTEFLLDDIRGLKR 144 (419)
Q Consensus 72 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~i~-~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~l~~ 144 (419)
.+|+.|++++|.|+......+.++++|++|+|++| .|+.-. ..+..+ ++|++|+|++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 35666666666666555555666666666666666 354210 222322 356666666663 55544455556666
Q ss_pred ccEEEcCCCC
Q psy4257 145 LRTVDLSYNK 154 (419)
Q Consensus 145 L~~L~l~~n~ 154 (419)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666653
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.2e-06 Score=72.19 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=52.4
Q ss_pred CCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCc-CcccCchhccCC----CCCceEeCcCCc-ccccC-ccCCCCCC
Q psy4257 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFL----PALEELFVSHNS-LTRLD-KDFHGLPV 267 (419)
Q Consensus 195 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~N~-i~~l~-~~~~~l~~ 267 (419)
..|+.||++++.|+......+.++++|++|+|++|. |++.....++.+ ++|++|+|++|. |+.-. ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 457777777777766655666777777777777774 665444444433 357777777763 55421 23445666
Q ss_pred cCEEecCCCc-ccc
Q psy4257 268 LCKADLAHNN-IKA 280 (419)
Q Consensus 268 L~~L~L~~N~-l~~ 280 (419)
|++|+|+++. ++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 6666666653 443
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.95 E-value=1.2e-05 Score=67.53 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=82.1
Q ss_pred ccccccceeecccc-cCc-----cCccccccccccceeecccccccC-----chhhhcCCCCCCEEecCCCCCcccChh-
Q psy4257 23 GTLSKLQLLVIEQN-QLE-----ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRRD- 90 (419)
Q Consensus 23 ~~~~~L~~L~L~~n-~l~-----~i~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~- 90 (419)
..-+.|+.|+|++| .|. .+.+.+.....|+.|+|++|.|.. |..++.....|+.|+|++|.|......
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34678999999885 776 244557777889999999998884 556777788999999999999865543
Q ss_pred ---hhcCCCCCCEEEccCC---cCc-----cccccccCCccCcEEeccccccc
Q psy4257 91 ---EFQNLHNLDSISLQNN---QIT-----SMNSSLSGLTKLAYLYLSHNQLT 132 (419)
Q Consensus 91 ---~~~~~~~L~~L~L~~n---~l~-----~i~~~l~~l~~L~~L~l~~n~l~ 132 (419)
++.....|++|+|++| .+. .|...+..-+.|+.|+++.|.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4455667999999865 444 23456677788999999877653
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=7e-06 Score=68.97 Aligned_cols=112 Identities=14% Similarity=0.154 Sum_probs=85.4
Q ss_pred cccccccceeecccc-cccC-----chhhhcCCCCCCEEecCCCCCcccChhh----hcCCCCCCEEEccCCcCcc----
Q psy4257 45 IQLFSQLGSLYANNN-RITS-----LDGLLRGLTKLQVFNMDFNQITMVRRDE----FQNLHNLDSISLQNNQITS---- 110 (419)
Q Consensus 45 ~~~~~~L~~L~l~~n-~i~~-----l~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~L~~n~l~~---- 110 (419)
+.....|++|+|++| .|.. +-.++.....|+.|+|++|+|......+ +.....|++|+|++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 456678999999985 7764 4567788889999999999998665443 4466899999999999983
Q ss_pred -ccccccCCccCcEEecccc---ccccc----ChhhhcCCCCccEEEcCCCCCc
Q psy4257 111 -MNSSLSGLTKLAYLYLSHN---QLTEF----LLDDIRGLKRLRTVDLSYNKIN 156 (419)
Q Consensus 111 -i~~~l~~l~~L~~L~l~~n---~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 156 (419)
|.+.+..-..|++|+|++| .+... +...+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4466777788999999865 33322 3345566688999999887654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.0002 Score=56.05 Aligned_cols=54 Identities=26% Similarity=0.288 Sum_probs=27.0
Q ss_pred EEEcCCCCCC--CcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCCcc
Q psy4257 199 RLDLSHNKLR--TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255 (419)
Q Consensus 199 ~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 255 (419)
.++.+++.++ .+ |..+. .+|+.|+|++|+|+.++...|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 33 22222 2455555555555555555555555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=86.31 E-value=1.1 Score=32.73 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=32.2
Q ss_pred CCCCCCcCcccCCCCCCCcEEEccCCcCcccCchhccCCCCCceEeCcCC
Q psy4257 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253 (419)
Q Consensus 204 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 253 (419)
+..++.|...+|.+|.+|+.+.|-.+ ++.|...+|.++.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34556666667777777777777653 56666667777777777766654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.73 E-value=6.1 Score=28.57 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=34.8
Q ss_pred CcCch-hhhcCCCCCcEEEcCCCCCCCcCcccCCCCCCCcEEEccCCc
Q psy4257 184 IENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230 (419)
Q Consensus 184 l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 230 (419)
++.|. .+|.++.+|+.+.|-.+ ++.|...+|.+|.+|+.+.+....
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 34443 56778888888888764 667778889999999999887754
No 167
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=64.17 E-value=4.1 Score=33.26 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.8
Q ss_pred EEecCCcc
Q psy4257 302 IYLEGNPV 309 (419)
Q Consensus 302 l~l~~Np~ 309 (419)
++..||.+
T Consensus 153 fDW~gn~i 160 (227)
T 3ghp_A 153 FNWYGNRI 160 (227)
T ss_dssp EETTSCBC
T ss_pred EeccCcEe
Confidence 44445544
Done!