RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4257
(419 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 186 bits (473), Expect = 3e-54
Identities = 73/334 (21%), Positives = 145/334 (43%), Gaps = 20/334 (5%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
T+ L L NR+K+L + + + L+ L + +N + A+ L +L +NR
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGL 118
+ + G+ GL+ L ++ N+I ++ FQ+L+NL S+ + +N + + + SGL
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
L L L LT + + L L + L + IN + + + L+
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD-----YSFKRLYRLKVLE 206
Query: 179 LQHNE-IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
+ H ++ + + L+ L ++H L + L L+ L++S+N ++T+E +
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266
Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL 296
L L+E+ + L ++ F GL L +++ N + + + +F
Sbjct: 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL--------EESVFHS 318
Query: 297 NSTLR-IYLEGNPVLCDDSMRAVIDAMETINNNT 329
L + L+ NP+ CD + V +N N
Sbjct: 319 VGNLETLILDSNPLACDCRLLWVFRRRWRLNFNR 352
Score = 180 bits (459), Expect = 3e-52
Identities = 71/284 (25%), Positives = 123/284 (43%), Gaps = 11/284 (3%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
L L LN N + ++E G L L+ L + N+L+ +P + S L L +
Sbjct: 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
N+I L D + + L L+ + N + + F L++L+ ++L+ +TS+ + +LS
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L L L L H + + L RL+ +++S+ T N N+
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-----CLYGLNLTS 228
Query: 177 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
L + H + + A+ + L L+LS+N + TI L L+ + + L +E
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 236 ETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
+ L L L VS N LT L++ FH + L L N +
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 156 bits (395), Expect = 6e-43
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 11/250 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+ A+P I ++ L NRI +L+ L+ ++ N ++ V F N
Sbjct: 21 KRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN 78
Query: 95 LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L NL ++ L++N++ + +GL+ L L +S N++ L + L L+++++ N
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISP 212
+ G+ ++ +L L+ + ++ AL +HGL L L H + I
Sbjct: 139 DLVYISH-----RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
F L LK+L+ISH + + L L ++H +LT + L L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 272 DLAHNNIKAI 281
+L++N I I
Sbjct: 254 NLSYNPISTI 263
Score = 100 bits (251), Expect = 2e-23
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 4/160 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVI-EQNQLEALPSDIQLFSQLGSLYANN 58
L L L L + + ++ L +L++L I L+ + + L SL +
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
+T++ +R L L+ N+ +N I+ + L L I L Q+ + +
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
GL L L +S NQLT + L T+ L N +
Sbjct: 294 GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 178 bits (453), Expect = 5e-52
Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 30/329 (9%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
L + + N+ ++ L L + +++LL + Q+E + + + LY N
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103
Query: 60 RITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSG 117
I L + + + L V ++ N ++ + R F N L ++S+ NN + +
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE------GKNQVQGV 171
T L L LS N+LT D+ + L ++SYN ++ N + V
Sbjct: 164 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220
Query: 172 -----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
+ LKLQHN + + L+ GL +DLS+N+L I F+ + L+ L I
Sbjct: 221 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLA 286
S+N L L + +P L+ L +SHN L ++++ L L HN+I + +
Sbjct: 280 SNNRLVALNLYGQP-IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST- 337
Query: 287 LKTQCQIFGLNSTLRIYLEGNPVLCDDSM 315
++ + L N C+
Sbjct: 338 ---------HHTLKNLTLSHNDWDCNSLR 357
Score = 132 bits (333), Expect = 7e-35
Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 20/230 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
L L ++NN L+ +E + LQ L + N+L + L L + N
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN 196
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+++L ++ + N I +VR L L LQ+N +T + L
Sbjct: 197 LLSTLAIP----IAVEELDASHNSINVVRGPVNVELTILK---LQHNNLTDT-AWLLNYP 248
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
L + LS+N+L + + ++RL + +S N++ Q + + L L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL------YGQPIPTLKVLDL 302
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
HN + +++ L L L HN + T+ +LK L +SHN
Sbjct: 303 SHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 349
Score = 117 bits (296), Expect = 1e-29
Identities = 47/227 (20%), Positives = 93/227 (40%), Gaps = 14/227 (6%)
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-L 115
+D L+ ++D + E L+N ++ +N+ + + ++ L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
++ L L+ Q+ E ++ + + +N I + Q V +
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVPLLT 120
Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
L L+ N++ +L G L+ L +S+N L I D F SL+ L +S N LT +
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+ + +P+L VS+N L+ L + + D +HN+I +
Sbjct: 181 DLSL---IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV 220
Score = 110 bits (276), Expect = 6e-27
Identities = 42/224 (18%), Positives = 79/224 (35%), Gaps = 30/224 (13%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL------------- 47
T L L L++NRL + L + L + N L L I +
Sbjct: 163 ATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 220
Query: 48 ----FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 103
+L L +N +T L L ++ +N++ + F + L+ + +
Sbjct: 221 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279
Query: 104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
NN++ ++N + L L LSHN L + + RL + L +N I
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL----- 333
Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
++ + L L HN+ + + ++R +
Sbjct: 334 ---KLSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQ 373
Score = 107 bits (268), Expect = 8e-26
Identities = 34/196 (17%), Positives = 75/196 (38%), Gaps = 14/196 (7%)
Query: 101 ISLQNNQITSMNSSLSG------LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
+ I + L + ++ + + + +++ ++L+ +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPD 213
I + I +L + N I L + L+ L L N L ++
Sbjct: 81 IEEI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 135
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
F L L +S+N L +E+ + +L+ L +S N LT + D +P L A++
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANV 193
Query: 274 AHNNIKAINIQLALKT 289
++N + + I +A++
Sbjct: 194 SYNLLSTLAIPIAVEE 209
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 170 bits (432), Expect = 2e-47
Identities = 76/329 (23%), Positives = 137/329 (41%), Gaps = 30/329 (9%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
L + + N+ ++ L L + +++LL + Q+E + + + LY N
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109
Query: 60 RITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSG 117
I L + + + L V ++ N ++ + R F N L ++S+ NN + +
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE------GKNQVQGV 171
T L L LS N+LT D+ + L ++SYN ++ N + V
Sbjct: 170 TTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226
Query: 172 -----TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
+ LKLQHN + + L+ GL +DLS+N+L I F+ + L+ L I
Sbjct: 227 RGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLA 286
S+N L L + +P L+ L +SHN L ++++ L L HN+I + +
Sbjct: 286 SNNRLVALNLYGQP-IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST- 343
Query: 287 LKTQCQIFGLNSTLRIYLEGNPVLCDDSM 315
++ + L N C+
Sbjct: 344 ---------HHTLKNLTLSHNDWDCNSLR 363
Score = 151 bits (383), Expect = 1e-40
Identities = 70/320 (21%), Positives = 126/320 (39%), Gaps = 28/320 (8%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
D++ + E TL+ +++ + + + LP+ + F Q+ L N+ +
Sbjct: 29 FYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86
Query: 61 ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
I +D +Q M FN I + FQN+ L + L+ N ++S+
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR--------NEGKNQVQG 170
KL L +S+N L D + L+ + LS N++ N N +
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206
Query: 171 V---TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
+ + EL HN I + G + L+ L L HN L + + L +D+S
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVN--VELTILKLQHNNLTDTA--WLLNYPGLVEVDLS 262
Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLAL 287
+N L + + LE L++S+N L L+ +P L DL+HN++ +
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-- 320
Query: 288 KTQCQIFGLNSTLRIYLEGN 307
+ +YL+ N
Sbjct: 321 ------PQFDRLENLYLDHN 334
Score = 111 bits (280), Expect = 8e-27
Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 14/234 (5%)
Query: 50 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 109
Q ++ +D L+ ++D + E L+N ++ +N+ +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 110 SM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
+ + L ++ L L+ Q+ E ++ + + +N I +
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVF 119
Query: 169 QGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
Q V + L L+ N++ +L G L+ L +S+N L I D F SL+ L +S
Sbjct: 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
N LT ++ + +P+L VS+N L+ L + + D +HN+I +
Sbjct: 180 SNRLTHVDLSL---IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVV 226
Score = 103 bits (257), Expect = 6e-24
Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 30/224 (13%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL------------- 47
T L L L++NRL ++ L + L + N L L I +
Sbjct: 169 ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV 226
Query: 48 ----FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 103
+L L +N +T L L ++ +N++ + F + L+ + +
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285
Query: 104 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
NN++ ++N + L L LSHN L + + RL + L +N I
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL----- 339
Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
++ + L L HN+ + + ++R +
Sbjct: 340 ---KLSTHHTLKNLTLSHNDWDC-NSLRALFRNVARPAVDDADQ 379
Score = 93.1 bits (231), Expect = 1e-20
Identities = 35/181 (19%), Positives = 71/181 (39%), Gaps = 7/181 (3%)
Query: 107 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN 166
+ ++S+L +++ + + L + V + + K
Sbjct: 15 EYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP-----AA 69
Query: 167 QVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
+ + L L +IE +D A H + +L + N +R + P F + L +L
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129
Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
+ N L++L P L L +S+N+L R++ D F L L+ N + +++
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189
Query: 285 L 285
L
Sbjct: 190 L 190
Score = 60.7 bits (147), Expect = 4e-10
Identities = 50/300 (16%), Positives = 96/300 (32%), Gaps = 7/300 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
+ L L+++NNRL +L + L++L + N L + + F +L +LY ++N
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 335
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
I +L L L+ + N N+ ++ + L
Sbjct: 336 IVTLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQ--LEH 389
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
S + LL I + V + + + T N ++ +T + LQ
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
NE + + + + + + +L+ + + L +
Sbjct: 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNK 509
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
L+E T+ + DL NI A+ QL K Q T
Sbjct: 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENI-ALEKQLDNKRAKQAELRQETS 568
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 164 bits (416), Expect = 3e-47
Identities = 60/265 (22%), Positives = 111/265 (41%), Gaps = 21/265 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
L +L+ L L NN++ + G L KL+ L + +NQL+ LP + L L + N
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK--MPKTLQELRVHEN 131
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
IT + + GL ++ V + N + + FQ + L I + + IT++ L
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 190
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L L+L N++T+ ++GL L + LS+N I+ + ++ E
Sbjct: 191 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-----DNGSLANTPHLRE 244
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI------GLDSLKMLDISHNL 230
L L +N++ + G L + + L +N + I +DF S + + N
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304
Query: 231 LTTLEETSKTF--LPALEELFVSHN 253
+ E TF + + + +
Sbjct: 305 VQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 160 bits (406), Expect = 8e-46
Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 11/275 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
LE +P D+ L NN+IT + DG + L L + N+I+ + F
Sbjct: 41 LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
L L+ + L NQ+ + + L L + N++T+ GL ++ V+L N
Sbjct: 99 LVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
+ G N QG+ + +++ I + L L+ L L NK+ +
Sbjct: 157 LKSSGIEN---GAFQGMKKLSYIRIADTNITTIPQGLPP--SLTELHLDGNKITKVDAAS 211
Query: 215 FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLA 274
GL++L L +S N ++ ++ S P L EL +++N L ++ + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271
Query: 275 HNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309
+NNI AI S + L NPV
Sbjct: 272 NNNISAIGSN-DFCPPGYNTKKASYSGVSLFSNPV 305
Score = 149 bits (378), Expect = 1e-41
Identities = 51/294 (17%), Positives = 110/294 (37%), Gaps = 46/294 (15%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
D L L NN++ + +G L L L++ N++ +
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------------------- 92
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTK 120
G L KL+ + NQ+ + + L L + N+IT + +GL +
Sbjct: 93 ---PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR---VHENEITKVRKSVFNGLNQ 146
Query: 121 LAYLYLSHNQLTEFLLDD--IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
+ + L N L +++ +G+K+L + ++ I ++ EL
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI--------PQGLPPSLTELH 198
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N+I + +L G++ L++L LS N + + L+ L +++N L +
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258
Query: 238 SKTFLPALEELFVSHNSLTRLDKD-------FHGLPVLCKADLAHNNIKAINIQ 284
++ +++ +N+++ + + L N ++ IQ
Sbjct: 259 LAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311
Score = 119 bits (301), Expect = 7e-31
Identities = 44/215 (20%), Positives = 95/215 (44%), Gaps = 14/215 (6%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---N 57
L L ++ N + + + L+++ ++ + N L++ + F + L
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
+ IT++ GL LT+L ++D N+IT V + L+NL + L N I+++ N SL
Sbjct: 180 DTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN-EGKNQVQGVTNI 174
+ L L+L++N+L + + + K ++ V L N I+ G+ + +
Sbjct: 237 ANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295
Query: 175 FELKLQHNEIENLD---GALMGIHGLSRLDLSHNK 206
+ L N ++ + ++ + + L + K
Sbjct: 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
Score = 99.7 bits (249), Expect = 1e-23
Identities = 26/165 (15%), Positives = 68/165 (41%), Gaps = 14/165 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
G+ L+++ + + + ++ G L L ++ N++ + + + + L L + N
Sbjct: 169 GMKKLSYIRIADTNITTI--PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS---- 114
I+++ +G L L+ +++ N++ V + + + L NN I+++ S+
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCP 285
Query: 115 ---LSGLTKLAYLYLSHNQLTEFLLDD--IRGLKRLRTVDLSYNK 154
+ + + L N + + + R + V L K
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 169 bits (430), Expect = 4e-47
Identities = 70/345 (20%), Positives = 137/345 (39%), Gaps = 23/345 (6%)
Query: 5 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 63
+ + L + ++ S LQ L + L LPS + S L L + N+ +
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315
Query: 64 LD-GLLRGLTKLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSM---NSSLSGL 118
L L ++ N + +NL NL + L ++ I + N L L
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
+ L L LS+N+ + + +L +DL++ ++ + ++ Q + + L
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL----KVKDAQSPFQNLHLLKVLN 431
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGLDSLKMLDISHNLLTTL 234
L H+ ++ + G+ L L+L N + L L++L +S L+++
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQI 293
++ + T L + + +SHN LT + L + +LA N+I I L +
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL-------L 543
Query: 294 FGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQ 338
L+ I L NP+ C S ++ + + +T+C+
Sbjct: 544 PILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCE 588
Score = 159 bits (405), Expect = 1e-43
Identities = 65/292 (22%), Positives = 114/292 (39%), Gaps = 22/292 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL-----Y 55
+ L L L L L L LS L+ LV+ N+ E L S SL
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI--SASNFPSLTHLSIK 333
Query: 56 ANNNRITSLDGLLRGLTKLQVFNMDFNQITMV--RRDEFQNLHNLDSISLQNNQITSM-N 112
N R+ G L L L+ ++ + I + +NL +L S++L N+ S+
Sbjct: 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT 393
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
+ +L L L+ +L + L L+ ++LS++ ++ + G+
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-----EQLFDGL 448
Query: 172 TNIFELKLQHNEIENLD----GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
+ L LQ N + +L + L L LS L +I F L + +D+S
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
HN LT+ + + L + L ++ N ++ + L +L N +
Sbjct: 509 HNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 156 bits (396), Expect = 3e-42
Identities = 64/297 (21%), Positives = 111/297 (37%), Gaps = 17/297 (5%)
Query: 1 GLTDLNWLFL--NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN- 57
L L L N N + +E + Q L Q + S + SL+
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 58 --NNRITSLDGLL---RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
+ + + ++ N+ + + + F L + L ++ +
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
S L GL+ L L LS N+ L + + N G ++ +
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL----ELGTGCLENLE 350
Query: 173 NIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
N+ EL L H++IE D L + L L+LS+N+ ++ + F L++LD++
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 230 LLTTLEETSK-TFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
L + S L L+ L +SH+ L + F GLP L +L N+ NIQ
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Score = 151 bits (383), Expect = 1e-40
Identities = 63/317 (19%), Positives = 114/317 (35%), Gaps = 19/317 (5%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
L+ L L N L + E L L+ L Q + ++ + L SLY +
Sbjct: 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL--QNNQITSMNSSL 115
N I+S+ KL+V + N I + +++ +L ++SL N I +
Sbjct: 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRG--LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
L Q + ++ ++ L + + +
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI---SPAVFEGLCEMS 255
Query: 174 IFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
+ + LQ + N+ GL LDL+ L + P +GL +LK L +S N
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFE 314
Query: 233 TLEETSKTFLPALEELFVSHNSL--TRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQ 290
L + S + P+L L + N+ L L + DL+H++I+ +
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC-----CN 369
Query: 291 CQIFGLNSTLRIYLEGN 307
Q+ L+ + L N
Sbjct: 370 LQLRNLSHLQSLNLSYN 386
Score = 150 bits (380), Expect = 3e-40
Identities = 52/308 (16%), Positives = 108/308 (35%), Gaps = 31/308 (10%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 59
L + N L ++ L L L + + Q+ + D Q +L +L N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSG 117
+ + + L G L+ I+ + N L+S+ L +N I+S+
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFP 151
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR--TVDLSYNKI-------------------- 155
KL L +N + +D+ L++ +++L+ N I
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211
Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG---LSRLDLSHNKLRTISP 212
+ + + +++ + + E++ A+ + ++L + IS
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
+ F L+ LD++ L+ L L L++L +S N L + P L
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHL 330
Query: 272 DLAHNNIK 279
+ N +
Sbjct: 331 SIKGNTKR 338
Score = 141 bits (357), Expect = 5e-37
Identities = 58/302 (19%), Positives = 119/302 (39%), Gaps = 20/302 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLG--SLYA 56
L L+L +N + S++ + KL++L + N + L D+ Q SL
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQITMV--RRDEFQNLHNLDSISLQNNQITSMNSS 114
N N I ++ Q N Q +V + + + +L + ++ ++ +
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
Query: 115 L---SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
+ + + L + + L+ +DL+ +++ + + G+
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL------PSGLVGL 300
Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT-ISPDDFIGLDSLKMLDISHN 229
+ + +L L N+ ENL + L+ L + N R + L++L+ LD+SH+
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 230 LLTTLEETSKTF--LPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLA 286
+ T + + L L+ L +S+N L + F P L DLA +K + Q
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420
Query: 287 LK 288
+
Sbjct: 421 FQ 422
Score = 128 bits (325), Expect = 1e-32
Identities = 45/243 (18%), Positives = 92/243 (37%), Gaps = 16/243 (6%)
Query: 1 GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA-- 56
L L + N + G L L L+ L + + +E L L +
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 57 -NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMN- 112
+ N SL + +L++ ++ F ++ + FQNLH L ++L ++ + +
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Query: 113 SSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
GL L +L L N + + ++ L RL + LS+ ++ ++
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID-----QHAFT 497
Query: 170 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+ + + L HN + + + L+L+ N + I P L + +++ N
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 230 LLT 232
L
Sbjct: 558 PLD 560
Score = 125 bits (317), Expect = 1e-31
Identities = 48/257 (18%), Positives = 90/257 (35%), Gaps = 18/257 (7%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L +P L + L + N + ++ L L ++ QI + D FQ+
Sbjct: 22 LGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQS 79
Query: 95 LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
H LD++ L N + M +LSG L +L+ ++ + K L ++ L N
Sbjct: 80 QHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN 139
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSR--LDLSHNKLRTI 210
I+ + + L Q+N I L + + + L+L+ N + I
Sbjct: 140 HISSI-----KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194
Query: 211 SPDDFIGLDSLKMLDISHN--LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV 267
P F + L+ LL + + + +L + F GL
Sbjct: 195 EPGAFDSA-VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 268 --LCKADLAHNNIKAIN 282
+ +L + I+
Sbjct: 254 MSVESINLQKHYFFNIS 270
Score = 101 bits (253), Expect = 2e-23
Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 11/186 (5%)
Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ + +N + + +L T+ L S N L L L +DL+ +I
Sbjct: 16 TYNCENLGLNEIPGTLPNSTE--CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI---- 69
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGL 218
++ Q + L L N + + + AL G L L + +I
Sbjct: 70 -YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128
Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKA--DLAH 275
+L+ L + N +++++ L+ L +N++ L K D L +L
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188
Query: 276 NNIKAI 281
N+I I
Sbjct: 189 NDIAGI 194
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 162 bits (411), Expect = 2e-45
Identities = 66/245 (26%), Positives = 108/245 (44%), Gaps = 12/245 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L +P I S L N I + R L L+V + N I + F
Sbjct: 64 RGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG 121
Query: 95 LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS-Y 152
L +L+++ L +N +T + S + L+KL L+L +N + + L +DL
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212
K+ +G+ N+ L L I+++ L + GL L++S N I P
Sbjct: 182 KKLEYISE-----GAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP 235
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
F GL SLK L + ++ ++ +E + L +L EL ++HN+L+ L D F L L +
Sbjct: 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVEL 295
Query: 272 DLAHN 276
L HN
Sbjct: 296 HLHHN 300
Score = 159 bits (403), Expect = 2e-44
Identities = 70/378 (18%), Positives = 139/378 (36%), Gaps = 51/378 (13%)
Query: 48 FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+Q + ++ + G+ L N+ N I M++ D F++LH+L+ + L N
Sbjct: 53 SNQFSKVVCTRRGLSEVPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 107 QITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
I + + +GL L L L N LT L +LR + L N I +
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY---- 165
Query: 166 NQVQGVTNIFELKLQH-NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
V ++ L L ++E + +GA G+ L L+L ++ + + L L+
Sbjct: 166 -AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEE 222
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAIN 282
L++S N + S L +L++L+V ++ ++ ++++ F GL L + +LAHNN+ ++
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL- 281
Query: 283 IQLALKTQCQIF-GLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGET------ 335
+F L + ++L NP CD + + +
Sbjct: 282 -------PHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMH 334
Query: 336 --------------ICQPDSNETSTTTTTTTTTTP-------EPTPAPTSTTTQRSTTST 374
C + + P + + S
Sbjct: 335 MRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSH 394
Query: 375 TTQTPTTPIQEEYTETIT 392
++ P + + T +
Sbjct: 395 ASRHPRISVLNDGTLNFS 412
Score = 156 bits (395), Expect = 3e-43
Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 39/260 (15%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYANN 58
++ +L L N ++ ++ L L++L + +N + + F+ L S L +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA--FNGLASLNTLELFD 132
Query: 59 NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN-NQITSM-NSSL 115
N +T + G L+KL+ + N I + F + +L + L ++ + +
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
GL L YL L + + + ++ L L +++S N +
Sbjct: 193 EGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIR---------------- 234
Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
G+ G+ L +L + ++++ I + F GL SL L+++HN L++L
Sbjct: 235 ------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 236 ETSKTFLPALEELFVSHNSL 255
T L L EL + HN
Sbjct: 283 HDLFTPLRYLVELHLHHNPW 302
Score = 143 bits (362), Expect = 2e-38
Identities = 54/233 (23%), Positives = 90/233 (38%), Gaps = 33/233 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
L L L L N ++ +E G L+ L L + N L +PS + S+L L+ N
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156
Query: 59 NRITSL-DGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
N I S+ + L ++ + ++ + F+ L NL ++L I M +L+
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLT 215
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L L L +S N E GL L+ + + ++++
Sbjct: 216 PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE----------------- 258
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
A G+ L L+L+HN L ++ D F L L L + HN
Sbjct: 259 -----------RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 31.3 bits (71), Expect = 0.64
Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 38
GL L L L +N L SL L L L + N
Sbjct: 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 161 bits (408), Expect = 4e-45
Identities = 62/245 (25%), Positives = 110/245 (44%), Gaps = 12/245 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L +P I + L + N+I + + L L++ + N I + F
Sbjct: 53 KNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG 110
Query: 95 LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS-Y 152
L NL+++ L +N++T++ + + L+KL L+L +N + + LR +DL
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212
+++ +G++N+ L L + + L + L LDLS N L I P
Sbjct: 171 KRLSYISE-----GAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRP 224
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
F GL L+ L + + + +E + L +L E+ ++HN+LT L D F L L +
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
Query: 272 DLAHN 276
L HN
Sbjct: 285 HLHHN 289
Score = 155 bits (393), Expect = 6e-43
Identities = 65/271 (23%), Positives = 120/271 (44%), Gaps = 24/271 (8%)
Query: 48 FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+Q + + + DG+ L N+ NQI +++ + F++L +L+ + L N
Sbjct: 42 SNQFSKVICVRKNLREVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 107 QITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
I ++ + +GL L L L N+LT L +L+ + L N I +
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA--- 155
Query: 166 NQVQGVTNIFELKLQH-NEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
+ ++ L L + + +GA G+ L L+L+ LR I + L L
Sbjct: 156 --FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDE 211
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAIN 282
LD+S N L+ + S L L++L++ + + ++++ F L L + +LAHNN+ +
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL- 270
Query: 283 IQLALKTQCQIF-GLNSTLRIYLEGNPVLCD 312
+F L+ RI+L NP C+
Sbjct: 271 -------PHDLFTPLHHLERIHLHHNPWNCN 294
Score = 152 bits (386), Expect = 6e-42
Identities = 57/260 (21%), Positives = 113/260 (43%), Gaps = 39/260 (15%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYANN 58
T+ L L+ N+++ ++ L L++L + +N + + F+ L + L +
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG--AFNGLANLNTLELFD 121
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQITSM-NSSL 115
NR+T++ +G L+KL+ + N I + F + +L + L +++ + +
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
GL+ L YL L+ L E + ++ L +L +DLS N ++
Sbjct: 182 EGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIR---------------- 223
Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
G+ G+ L +L + ++++ I + F L SL ++++HN LT L
Sbjct: 224 ------------PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271
Query: 236 ETSKTFLPALEELFVSHNSL 255
T L LE + + HN
Sbjct: 272 HDLFTPLHHLERIHLHHNPW 291
Score = 142 bits (360), Expect = 3e-38
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 33/233 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
L L L L+ N ++++E G L+ L L + N+L +P+ S+L L+ N
Sbjct: 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145
Query: 59 NRITSL-DGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
N I S+ + L+ ++ + +++ + F+ L NL ++L + + +L+
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLT 204
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L KL L LS N L+ +GL L+ + + ++I
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE----------------- 247
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
A + L ++L+HN L + D F L L+ + + HN
Sbjct: 248 -----------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 31.3 bits (71), Expect = 0.59
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 38
L L + L +N L L L L+ + + N
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 162 bits (412), Expect = 3e-44
Identities = 66/301 (21%), Positives = 116/301 (38%), Gaps = 21/301 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
+ L L + N + LE L L++L ++ N+L L + L L+ +
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 59 NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS---S 114
N I + L ++ N ++ + L NL + L NN+I ++ S
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
+ + L L LS NQ+ EF + RL + L+ ++ T T+I
Sbjct: 167 IFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL--ANTSI 224
Query: 175 FELKLQHNEIENLDGAL---MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
L L ++++ + L+ LDLS+N L + D F L L+ + +N +
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 232 TTLEETSKTFLPALEELFVSHN---------SLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
L S L + L + + SL ++D F L L ++ N+I I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344
Query: 282 N 282
Sbjct: 345 K 345
Score = 159 bits (404), Expect = 4e-43
Identities = 69/355 (19%), Positives = 136/355 (38%), Gaps = 30/355 (8%)
Query: 5 LNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRIT 62
++ L ++ L L+ L +E N + + S++ L L +N+ +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 63 SLD---GLLRGL--TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSL 115
L + L + N+ N+I+ + D F L +L+ + L N+I
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
GL + +YLS+N+ + + + L+ + L + + + Q + N+
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV---DSSPSPFQPLRNLT 483
Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIG--------LDSLKMLDI 226
L L +N I N++ L G+ L LDL HN L + G L L +L++
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543
Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
N + L L+ + + N+L L F+ L +L N I ++ ++
Sbjct: 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Query: 286 ALKTQCQIFGLNSTLRIYLEGNPVLCD-DSMRAVIDAM-ETINNNTKIHGETICQ 338
+ + + NP C +S+ ++ + ET N ++ +C
Sbjct: 604 FGP------AFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCN 652
Score = 157 bits (399), Expect = 2e-42
Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 20/321 (6%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 59
T++ L L +N+L+ L S+L L + N + L + Q L L +N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
++ L D T L ++ N I ++ + F NL ++ L +N ++S +
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 118 LTKLAYLYLSHNQLTEFLLDDIR--GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
L L L LS+N++ +++ L+ ++LS N+I +F + +F
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF-----SPGCFHAIGRLF 198
Query: 176 ELKLQHNEIENL----DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHN 229
L L + ++ + + L LS+++L T S F+GL +L MLD+S+N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALK 288
L + S +LP LE F+ +N++ L HGL + +L + K +L
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 289 T-QCQIFGLNSTLR-IYLEGN 307
F L + +E N
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDN 339
Score = 150 bits (381), Expect = 5e-40
Identities = 64/304 (21%), Positives = 124/304 (40%), Gaps = 24/304 (7%)
Query: 1 GLTDLNWLFLNNNRLKSL----EGQLGTLSKLQLLVIEQNQLEALPSDI---QLFSQLGS 53
+ L LFLNN +L + ++ L + +QL + ++ L
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 54 LYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
L + N + + + L +L+ F +++N I + L N+ ++L+ +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312
Query: 113 S----------SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
S S L L +L + N + + GL L+ + LS + + N
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
Query: 163 EGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDS 220
E + + + L L N+I + A + L LDL N++ + ++ ++ GL++
Sbjct: 373 ETFVSL-AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431
Query: 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD---FHGLPVLCKADLAHNN 277
+ + +S+N L S +P+L+ L + +L +D F L L DL++NN
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491
Query: 278 IKAI 281
I I
Sbjct: 492 IANI 495
Score = 149 bits (379), Expect = 1e-39
Identities = 66/300 (22%), Positives = 114/300 (38%), Gaps = 27/300 (9%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLG-----SL 54
L L L + +N + + L L+ L + + + F L L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 55 YANNNRITSL-DGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMN 112
N+I+ + L L+V ++ N+I + E++ L N+ I L N+ +
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446
Query: 113 S-SLSGLTKLAYLYLSHNQLT--EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
S + + L L L L + + L+ L +DLS N I + ++
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-----DMLE 501
Query: 170 GVTNIFELKLQHNEIENLD---------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 220
G+ + L LQHN + L L G+ L L+L N I + F L
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561
Query: 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF--HGLPVLCKADLAHNNI 278
LK++D+ N L TL + +L+ L + N +T ++K L + D+ N
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Score = 146 bits (370), Expect = 1e-38
Identities = 75/332 (22%), Positives = 134/332 (40%), Gaps = 30/332 (9%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTL--SKLQLLVIEQNQLEALPSD-IQLFSQLGSLYA 56
T + L L+N++L + L + L +L + N L + +D QL +
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279
Query: 57 NNNRITSLD-GLLRGLTKLQVFNMD---------FNQITMVRRDEFQNLHNLDSISLQNN 106
N I L L GL ++ N+ + + FQ L L+ +++++N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 107 QITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDI----RGLKRLRTVDLSYNKINKFGTR 161
I + + +GL L YL LS++ + L + L ++L+ NKI+K
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-- 397
Query: 162 NEGKNQVQGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
+ + ++ L L NEI G+ + + LS+NK ++ + F +
Sbjct: 398 ---SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP 454
Query: 220 SLKMLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHN 276
SL+ L + L ++ + F L L L +S+N++ ++ D GL L DL HN
Sbjct: 455 SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514
Query: 277 NIKAINIQLALKTQCQIFGLNSTLR-IYLEGN 307
N+ + S L + LE N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Score = 142 bits (360), Expect = 3e-37
Identities = 58/266 (21%), Positives = 119/266 (44%), Gaps = 18/266 (6%)
Query: 28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 86
++ +L +P D+ + + L +N++ L ++L ++ FN I+
Sbjct: 6 HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63
Query: 87 VRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 145
+ + Q L L ++LQ+N+++ ++ + + T L L+L N + + + K L
Sbjct: 64 LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123
Query: 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL---DL 202
T+DLS+N ++ + N+ EL L +N+I+ L + I S L +L
Sbjct: 124 ITLDLSHNGLSST-----KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 203 SHNKLRTISPDDFIGLDSLKMLDISHNLLTTL---EETSKTFLPALEELFVSHNSLTRLD 259
S N+++ SP F + L L +++ L + + ++ L +S++ L+
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 260 KD-FHGLPV--LCKADLAHNNIKAIN 282
F GL L DL++NN+ +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVG 264
Score = 133 bits (337), Expect = 4e-34
Identities = 66/307 (21%), Positives = 116/307 (37%), Gaps = 31/307 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
T+L L L +N ++ ++ L L + N L + L L +N
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154
Query: 59 NRITSL---DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT----SM 111
N+I +L + + + L+ + NQI F + L + L N Q+
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214
Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK--RLRTVDLSYNKINKFGTRNEGKNQVQ 169
T + L LS++QL+ GLK L +DLSYN +N G +
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG-----NDSFA 269
Query: 170 GVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHN---------KLRTISPDDFIGLD 219
+ + L++N I++L +L G+ + L+L + L I F L
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA-----DLA 274
L+ L++ N + ++ T L L+ L +S++ + L + +L
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389
Query: 275 HNNIKAI 281
N I I
Sbjct: 390 KNKISKI 396
Score = 123 bits (312), Expect = 7e-31
Identities = 55/273 (20%), Positives = 101/273 (36%), Gaps = 22/273 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYAN 57
+ L+ L L N++ +E L L++L + N++ + + + +Y +
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSM-NS 113
N+ L + LQ + + V FQ L NL + L NN I ++ +
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 114 SLSGLTKLAYLYLSHNQLTEF--------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
L GL KL L L HN L + ++GL L ++L N ++
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-----IPV 553
Query: 166 NQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDF-IGLDSLKM 223
+ + + + L N + L L L+L N + ++ F +L
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
LD+ N E+ F+ + E + L+
Sbjct: 614 LDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646
Score = 92.8 bits (231), Expect = 2e-20
Identities = 43/213 (20%), Positives = 79/213 (37%), Gaps = 36/213 (16%)
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ + + ++T + L T + L L+HNQL + +L ++D+ +N I+
Sbjct: 5 SHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62
Query: 157 KFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI 216
K +E + L L+L HN+L +S F
Sbjct: 63 K--------------------------LE--PELCQKLPMLKVLNLQHNELSQLSDKTFA 94
Query: 217 GLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAH 275
+L L + N + ++ L L +SHN L+ L L + L++
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154
Query: 276 NNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
N I+A+ + IF +S ++ L N
Sbjct: 155 NKIQALKSEE-----LDIFANSSLKKLELSSNQ 182
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 155 bits (393), Expect = 4e-44
Identities = 44/276 (15%), Positives = 101/276 (36%), Gaps = 27/276 (9%)
Query: 40 ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
A+ Q ++ ++ + L + ++ ++ N ++ + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
+ ++L +N + L L+ L L L++N + E + + T+ + N I++
Sbjct: 61 ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRV 114
Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
+ L +N+I L D + LDL N++ T++ +
Sbjct: 115 SCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166
Query: 218 -LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
D+L+ L++ +N + ++ L+ L +S N L + +F + L +N
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
Query: 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
+ I + + + L GN C
Sbjct: 225 KLVLI--------EKALRFSQNLEHFDLRGNGFHCG 252
Score = 140 bits (354), Expect = 2e-38
Identities = 52/291 (17%), Positives = 110/291 (37%), Gaps = 17/291 (5%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 59
+ ++ LK + ++ L + N L + + + F++L L ++N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
+ L L+ L+ +++ N + E +++++ NN I+ + S S
Sbjct: 69 VLYETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV--SCSRGQ 120
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
+YL++N++T D R++ +DL N+I+ + + L L
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS----SDTLEHLNL 176
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
Q+N I ++ + L LDLS NKL + +F + + + +N L +E+ +
Sbjct: 177 QYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALR 234
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQ 290
LE + N +A +K + Q +
Sbjct: 235 F-SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT 284
Score = 138 bits (351), Expect = 4e-38
Identities = 54/286 (18%), Positives = 98/286 (34%), Gaps = 29/286 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
++ L L+ N L + L +KL+LL + N L D++ S L +L NNN
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN 90
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGL 118
+ L ++ + N I+ V Q N+ L NN+IT +
Sbjct: 91 YVQELL----VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCR 143
Query: 119 TKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
+++ YL L N++ + L ++L YN I + L
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------KGQVVFAKLKTL 196
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N++ + G++ + L +NKL I +L+ D+ N
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGT-- 253
Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAIN 282
L + F + + + K L + + +
Sbjct: 254 -------LRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
Score = 114 bits (287), Expect = 6e-29
Identities = 45/254 (17%), Positives = 86/254 (33%), Gaps = 16/254 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L+ L L LNNN ++ L ++ L N + + ++Y NN+
Sbjct: 78 SLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQITSMNSSLSGL 118
IT L D +++Q ++ N+I V E + L+ ++LQ N I +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVF 190
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
KL L LS N+L + + + + + L NK+ + ++ N+
Sbjct: 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI------EKALRFSQNLEHFD 243
Query: 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
L+ N ++ ++ ++ + + L
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
Query: 239 KTFLPALEELFVSH 252
L AL H
Sbjct: 304 ADRLIALGHHHHHH 317
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 154 bits (390), Expect = 2e-43
Identities = 58/265 (21%), Positives = 105/265 (39%), Gaps = 22/265 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL L L L NN++ + L KLQ L I +N L +P + L S L L ++N
Sbjct: 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN--LPSSLVELRIHDN 133
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
RI + G+ GL + M N + F L L+ + + ++T + L
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL- 191
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L L+L HN++ L+D+ +L + L +N+I + + + E
Sbjct: 192 -PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-----ENGSLSFLPTLRE 245
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD------SLKMLDISHNL 230
L L +N++ + L + L + L N + + +DF + + + +N
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
Query: 231 LTTLEETSKTF--LPALEELFVSHN 253
+ E TF + + +
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNY 330
Score = 150 bits (382), Expect = 2e-42
Identities = 63/283 (22%), Positives = 115/283 (40%), Gaps = 12/283 (4%)
Query: 28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 86
L+++ L+A+P +I L NN I+ L +GL L + N+I+
Sbjct: 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 87 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 146
+ F L L + + N + + +L + L L + N++ + GL+ +
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150
Query: 147 TVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNK 206
+++ N + G + + + L++ ++ + L L+ L L HNK
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGL----KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNK 204
Query: 207 LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLP 266
++ I +D + L L + HN + +E S +FLP L EL + +N L+R+ L
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLK 264
Query: 267 VLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309
+L L NNI + + I L NPV
Sbjct: 265 LLQVVYLHTNNITKVGVN-DFCPVGFGVKRAYYNGISLFNNPV 306
Score = 141 bits (357), Expect = 9e-39
Identities = 60/294 (20%), Positives = 109/294 (37%), Gaps = 47/294 (15%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
D L L NN + L + L L LV+ N++ +
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH------------------- 94
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
+ L KLQ + N + + + +L L + +N+I + SGL
Sbjct: 95 ---EKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRN 148
Query: 121 LAYLYLSHNQLTEFLLDDI--RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
+ + + N L + GLK L + +S K+ + EL
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGI--------PKDLPETLNELH 199
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L HN+I+ + L+ L RL L HN++R I L +L+ L + +N L+ +
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259
Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA------DLAHNNIKAINIQ 284
L L+ +++ N++T++ + F + K L +N + +Q
Sbjct: 260 LPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQ 312
Score = 113 bits (285), Expect = 1e-28
Identities = 41/212 (19%), Positives = 79/212 (37%), Gaps = 31/212 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLS--KLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
GL ++N + + N L++ + G KL L I + +L +P D L L L+ ++
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD--LPETLNELHLDH 202
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
N+I ++ L +KL + NQI M+ L L + L NN+++ + + L
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L +YL N +T+ ++D + +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPV-----------------------GFGVKRAYYNGI 299
Query: 178 KLQHNEIENLD---GALMGIHGLSRLDLSHNK 206
L +N + + + + + K
Sbjct: 300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 157 bits (398), Expect = 1e-42
Identities = 67/284 (23%), Positives = 120/284 (42%), Gaps = 15/284 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L +++ + L +K LE + K Q L I + QL+ P+ L SL N+
Sbjct: 283 CLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNK 339
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL--HNLDSISLQNNQITSMNSSLSGL 118
+ + L L ++ N ++ + +L ++L + L N M+++ GL
Sbjct: 340 GSISFKKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398
Query: 119 TKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
+L +L H+ L L++L +D+SY + + G+T++ L
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT-----KIDFDGIFLGLTSLNTL 453
Query: 178 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
K+ N ++ L L+ LDLS +L IS F L L++L++SHN L L+
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 236 ETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
+ L +L L S N + H L +L +N++
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Score = 147 bits (373), Expect = 3e-39
Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 14/262 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + +LK L L+ L + N+ + L L L + N
Sbjct: 305 KHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVAL-PSLSYLDLSRNA 361
Query: 61 ITSLD---GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSL 115
++ G L+ ++ FN + F L L + Q++ + + S+
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
L KL YL +S+ GL L T+ ++ N N TN+
Sbjct: 421 LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV----FANTTNLT 476
Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
L L ++E + G +H L L++SHN L + + L SL LD S N + T
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536
Query: 235 EETSKTFLPALEELFVSHNSLT 256
+ + F +L +++NS+
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558
Score = 137 bits (347), Expect = 1e-35
Identities = 69/371 (18%), Positives = 122/371 (32%), Gaps = 44/371 (11%)
Query: 1 GLTDLNWLFLNNNRLKSL-------EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS 53
L L+ L K + L + + DI F L +
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286
Query: 54 LYA---NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
+ A I L+ + K Q ++ Q+ +L L S++L N+ +
Sbjct: 287 VSAMSLAGVSIKYLEDV-PKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSI 342
Query: 111 MNSSLSGLTKLAYLYLSHNQLTEFLLD--DIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
+ L L+YL LS N L+ G LR +DLS+N
Sbjct: 343 -SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS------ANF 395
Query: 169 QGVTNIFELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
G+ + L QH+ ++ + A + + L LD+S+ + F+GL SL L +
Sbjct: 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455
Query: 227 SHN-LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
+ N L L +S L ++ F L L +++HNN+ ++
Sbjct: 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515
Query: 285 L-----ALKT-----------QCQIFGLNSTLR-IYLEGNPVLCDDSMRAVIDAMETINN 327
+L T + + +L L N V C + + ++
Sbjct: 516 HYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQ 575
Query: 328 NTKIHGETICQ 338
+ C
Sbjct: 576 FLVNVEQMTCA 586
Score = 135 bits (343), Expect = 4e-35
Identities = 58/323 (17%), Positives = 115/323 (35%), Gaps = 41/323 (12%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNR 60
+ + L+ N LK L S+LQ L + + ++E + L +L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSG 117
I S G GLT L+ ++ + L L +++ +N I S + S
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLSYNKINKFG-------------- 159
LT L ++ LS+N + ++D++ L+ ++D+S N I+
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 160 -----TRNEGKNQVQGVTNIFELKLQHNEIENL-------DGALMGIHGLSR--LDLSHN 205
+ N K +Q + + +L E ++ + G+ ++ L++
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271
Query: 206 KLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGL 265
+ F L ++ + ++ + LE + L + L + L
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQF--PTLDL 327
Query: 266 PVLCKADLAHNNIKAINIQLALK 288
P L L N ++AL
Sbjct: 328 PFLKSLTLTMNKGSISFKKVALP 350
Score = 134 bits (338), Expect = 2e-34
Identities = 55/301 (18%), Positives = 99/301 (32%), Gaps = 30/301 (9%)
Query: 1 GLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-----QLFSQLGS 53
L L L + +N + S + L+ L + + N ++ + + + S
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185
Query: 54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSMN 112
L + N I + KL + N + + + QNL L L +
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 113 -------SSLSGLTKLAY--LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
S + GL + L++ + L + + L+ I
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL----- 300
Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM 223
V L + +++ + L L L+ NK + L SL
Sbjct: 301 --EDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK--KVALPSLSY 354
Query: 224 LDISHNLLTTLEETSKTFL--PALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
LD+S N L+ S + L +L L +S N + +F GL L D H+ +K +
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 414
Query: 282 N 282
Sbjct: 415 T 415
Score = 128 bits (325), Expect = 1e-32
Identities = 61/317 (19%), Positives = 118/317 (37%), Gaps = 36/317 (11%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--------SDIQLFSQLGSLYANNN 59
L ++ N + ++ Q KL L + N + + + + + + +
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245
Query: 60 RITSLD-GLLRGLTKLQV--FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
+ + ++ GL + + F + + +F L N+ ++SL I + +
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL-EDVP 304
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
K L + QL +F L L+++ L+ NK + + + ++
Sbjct: 305 KHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFKK-------VALPSLSY 354
Query: 177 LKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233
L L N + + +G + L LDLS N I +F+GL+ L+ LD H+ L
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKR 413
Query: 234 LEETSK-TFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQC 291
+ E S L L L +S+ + F GL L +A N+ K +
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS------- 466
Query: 292 QIFGLNSTLR-IYLEGN 307
+F + L + L
Sbjct: 467 NVFANTTNLTFLDLSKC 483
Score = 127 bits (321), Expect = 4e-32
Identities = 55/265 (20%), Positives = 102/265 (38%), Gaps = 24/265 (9%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+L +P D + S ++ + N + L ++LQ ++ +I + +
Sbjct: 21 QKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG 78
Query: 95 LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
LH+L ++ L N I S + S SGLT L L +L I L L+ +++++N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLS----RLDLSHNKLR 208
I+ +TN+ + L +N I+ + L + LD+S N +
Sbjct: 139 FIHSCKLPAY----FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID 194
Query: 209 TISPDDFIGLDSLKMLDISHNLLTT-LEETSKTFLPALEEL------FVSHNSLTRLDKD 261
I F G+ L L + N ++ + +T L L F +L +
Sbjct: 195 FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253
Query: 262 -FHGLPVLCKA--DLAHNNIKAINI 283
GL + L + N + +I
Sbjct: 254 IMEGLCDVTIDEFRLTYTNDFSDDI 278
Score = 93.6 bits (233), Expect = 1e-20
Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 32/184 (17%)
Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ + +++ + + + + LS N L L+ +DLS +I
Sbjct: 15 TYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-- 70
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
IE D A G+H LS L L+ N +++ SP F GL
Sbjct: 71 ------------------------IE--DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD--FHGLPVLCKADLAHNN 277
SL+ L L +LE L L++L V+HN + F L L DL++N
Sbjct: 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164
Query: 278 IKAI 281
I+ I
Sbjct: 165 IQTI 168
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 158 bits (400), Expect = 2e-42
Identities = 67/309 (21%), Positives = 113/309 (36%), Gaps = 26/309 (8%)
Query: 1 GLTDLNWLFL-NNNRLKSLEGQLGTLSKLQLLVIEQNQLE----------ALPSDIQLFS 49
L DL + L N + L L L +LQ L I N+ L D
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548
Query: 50 QLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
++ Y N + L+ + KL + + N++ + + F L + L NQ
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQ 606
Query: 108 ITSMNSSL-SGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
I + + ++ L SHN+L + + + + + +VD SYNKI G
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 166 NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS-------PDDFIG 217
N + L +NEI+ +S + LS+N + +I ++
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726
Query: 218 LDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
L +D+ N LT+L ++ T LP L + VS+N + L + H
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786
Query: 277 NIKAINIQL 285
N L
Sbjct: 787 RDAEGNRIL 795
Score = 143 bits (362), Expect = 2e-37
Identities = 52/303 (17%), Positives = 110/303 (36%), Gaps = 31/303 (10%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
+ L L +N+++ LE GT KL L ++ NQ+E +P D Q+ L ++N+
Sbjct: 572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630
Query: 61 ITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEF-----QNLHNLDSISLQNNQITSM-N 112
+ + + + + + +N+I R+ N +++L N+I
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690
Query: 113 SSLSGLTKLAYLYLSHNQLTEF-------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
+ + ++ + LS+N +T + + L T+DL +NK+
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD----D 746
Query: 166 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH------NKLRTISPDDFIGLD 219
+ + + + + +N + + L + H N++ P
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHNNI 278
SL L I N + + + P L L ++ N +D L ++
Sbjct: 807 SLIQLQIGSNDIRKV---DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
Query: 279 KAI 281
+ I
Sbjct: 864 QDI 866
Score = 140 bits (353), Expect = 4e-36
Identities = 49/323 (15%), Positives = 103/323 (31%), Gaps = 29/323 (8%)
Query: 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 63
+ NR+ + + L+KLQ++ + + + +
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD---YAKQYEN 482
Query: 64 LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN----------S 113
+ L L + D +L L S+++ N+ S
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542
Query: 114 SLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
K+ Y+ +N L EF ++ + +L +D +NK+
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-------FGTNV 595
Query: 173 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHNL 230
+ +LKL +N+IE + + + L SHNKL+ I + + +D S+N
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655
Query: 231 LTTLEETSKTFLPA-----LEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQ 284
+ + + + +S+N + + + F + L++N + +I
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715
Query: 285 LALKTQCQIFGLNSTLRIYLEGN 307
I L N
Sbjct: 716 SLKPKDGNYKNTYLLTTIDLRFN 738
Score = 129 bits (326), Expect = 1e-32
Identities = 56/308 (18%), Positives = 109/308 (35%), Gaps = 17/308 (5%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
+ L + +L LQ + +++ + D ++ + + NRIT +
Sbjct: 385 MHYKKMFLDYDQ-RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
++ LTKLQ+ + T N Q + S S L L + L
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANS----DYAKQYENEELSWSNLKDLTDVELY 499
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ----VQGVTNIFELKLQHNE 183
+ L D + L L++++++ N+ + I + +N
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559
Query: 184 IENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
+E +L + L LD HNK+R + F L L + +N + + E F
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAF 617
Query: 242 LPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST 299
+E L SHN L + + + V+ D ++N I + ++ + +
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS--CSMDDYKGINA 675
Query: 300 LRIYLEGN 307
+ L N
Sbjct: 676 STVTLSYN 683
Score = 115 bits (289), Expect = 8e-28
Identities = 35/264 (13%), Positives = 95/264 (35%), Gaps = 26/264 (9%)
Query: 1 GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDI------QLFSQLG 52
+ L ++N+LK + ++ + + N++ + +I
Sbjct: 617 FTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAS 676
Query: 53 SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMV-------RRDEFQNLHNLDSISLQ 104
++ + N I L + + + N +T + + ++N + L +I L+
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736
Query: 105 NNQITSMNSSL--SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI---NKFG 159
N++TS++ + L L+ + +S+N + +L+ + + + N+
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
+ + ++ +L++ N+I +D L L LD++ N +I
Sbjct: 796 R--QWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYI 851
Query: 220 SLKMLDISHNLLTTLEETSKTFLP 243
M + ++ + +
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGIE 875
Score = 74.5 bits (183), Expect = 2e-14
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 13/154 (8%)
Query: 1 GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY--- 55
L + L N+L SL + + TL L + + N + P+ SQL +
Sbjct: 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785
Query: 56 ----ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
N + + L + N I V L+ LD + +N S+
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADNPNISI 842
Query: 112 N-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
+ +S+ + L +++ + D G++R
Sbjct: 843 DVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 63.4 bits (154), Expect = 6e-11
Identities = 39/303 (12%), Positives = 80/303 (26%), Gaps = 52/303 (17%)
Query: 53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
L I L L N + T+ N + + + +Q
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV-- 317
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG------------- 159
L ++ L L+ + D I L L+ + + G
Sbjct: 318 -DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376
Query: 160 -------TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS- 211
+ K + + L + I + I SR+ L ++ ++
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGNLTN 435
Query: 212 -----PDDFIGLDSLKMLDISHNLLTTLEETSKTF-------------------LPALEE 247
L L+++ +++ T L L +
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495
Query: 248 LFVSHNS-LTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQC--QIFGLNSTLRIYL 304
+ + + +T+L + LP L ++A N + A T+ Y+
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555
Query: 305 EGN 307
N
Sbjct: 556 GYN 558
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 149 bits (377), Expect = 6e-42
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 15/251 (5%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITM--VRRDEF 92
L ++P+ I S L +N++ SL G+ LT+L ++ N ++
Sbjct: 17 KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLS 151
+L + L N + +M+S+ GL +L +L H+ L + + L+ L +D+S
Sbjct: 75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134
Query: 152 YNKINKFGTRNEGKNQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRT 209
+ G++++ LK+ N EN + L+ LDLS +L
Sbjct: 135 HTHTRVAF-----NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV- 267
+SP F L SL++L++SHN +L+ L +L+ L S N + K P
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249
Query: 268 LCKADLAHNNI 278
L +L N+
Sbjct: 250 LAFLNLTQNDF 260
Score = 148 bits (375), Expect = 1e-41
Identities = 65/294 (22%), Positives = 117/294 (39%), Gaps = 23/294 (7%)
Query: 53 SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
+ N+ +TS+ G+ T+L ++ N++ + F L L +SL +N ++
Sbjct: 11 EIRCNSKGLTSVPTGIPSSATRL---ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67
Query: 112 ---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
+ S G T L YL LS N + + + GL++L +D ++ + + +
Sbjct: 68 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL----KQMSEFSVF 122
Query: 169 QGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSLKMLDI 226
+ N+ L + H +G G+ L L ++ N PD F L +L LD+
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQL 285
S L L T+ L +L+ L +SHN+ LD + L L D + N+I Q
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242
Query: 286 ALKTQCQIFGLNSTLR-IYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQ 338
+ S+L + L N C ++ + ++ C
Sbjct: 243 -------LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECA 289
Score = 144 bits (365), Expect = 4e-40
Identities = 55/261 (21%), Positives = 103/261 (39%), Gaps = 36/261 (13%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYANN 58
+ L L +N+L+SL G L++L L + N L Q + L L +
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMV-RRDEFQNLHNLDSISLQNNQITSMNS-SLS 116
N + ++ GL +L+ + + + + F +L NL + + + + +
Sbjct: 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147
Query: 117 GLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
GL+ L L ++ N E L DI L+ L +DLS ++
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-------------------- 187
Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
++ A + L L++SHN ++ + L+SL++LD S N + T +
Sbjct: 188 ------EQLSP--TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239
Query: 236 ETSKTFLP-ALEELFVSHNSL 255
+ P +L L ++ N
Sbjct: 240 KQELQHFPSSLAFLNLTQNDF 260
Score = 130 bits (328), Expect = 9e-35
Identities = 41/237 (17%), Positives = 76/237 (32%), Gaps = 36/237 (15%)
Query: 1 GLTDLNWLFLNNNRLKSLE---GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 57
LT L L L++N L + L+ L + N + + S+ QL L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109
Query: 58 NNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NS 113
++ + + + L L ++ + F L +L+ + + N
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
+ L L +L LS QL + L L+ +++S+N
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-------------- 215
Query: 174 IFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-DSLKMLDISHN 229
++ L LD S N + T + SL L+++ N
Sbjct: 216 --------------TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 149 bits (379), Expect = 6e-41
Identities = 76/342 (22%), Positives = 133/342 (38%), Gaps = 38/342 (11%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
GL+ L L L+ N+ L G L+ L++L + Q L+ F L SL
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 57 NNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITSMN 112
+N I + + + V ++ FN++ + ++ N + + L + + MN
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196
Query: 113 S---------SLSGLTKLAYLYLSHNQLTEFL---LDDIRGLKRLRTVDLSYNKI----- 155
+ T + L LS N E + D +++++ LS +
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 156 --NKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISP 212
F + + + + L ++I L L +L L+ N++ I
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
+ F GL L L++S N L +++ L LE L +S+N + L F GLP L +
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 272 DLAHNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCD 312
L N +K++ IF L S +I+L NP C
Sbjct: 377 ALDTNQLKSV--------PDGIFDRLTSLQKIWLHTNPWDCS 410
Score = 111 bits (279), Expect = 5e-27
Identities = 54/310 (17%), Positives = 106/310 (34%), Gaps = 59/310 (19%)
Query: 28 LQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQI 84
+ + + N + L L L + + RGL+ L + +D+NQ
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 85 TMVRRDEFQNLHNLDSISLQNNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDI-R 140
+ F L NL+ ++L + + LT L L L N + +
Sbjct: 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD---------GAL 191
++R +DL++NK+ E + L+L +++++ G
Sbjct: 152 NMRRFHVLDLTFNKVKSI---CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGL--------------------------------- 218
++ LDLS N + F
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268
Query: 219 ------DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
+K D+S + + L ++ + LE+L ++ N + ++D + F GL L K
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328
Query: 272 DLAHNNIKAI 281
+L+ N + +I
Sbjct: 329 NLSQNFLGSI 338
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 153 bits (389), Expect = 7e-41
Identities = 67/318 (21%), Positives = 120/318 (37%), Gaps = 32/318 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
L +L L L ++++ L L L L + L F L +L
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 57 NNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITSMN 112
+ N+I SL L L+ + NQI +V E + L L SL N + S
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 113 S-------SLSGLTKLAYLYLSHNQLTEFLLD------------DIRGLKRLRTVDLSYN 153
S + L L +S N T + + + ++
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISP 212
I ++ +++ L L H + +L+ + L L+L++NK+ I+
Sbjct: 251 NIKDP---DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKA 271
+ F GLD+L++L++S+NLL L ++ LP + + + N + + F L L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 272 DLAHNNIKAINIQLALKT 289
DL N + I+ ++
Sbjct: 368 DLRDNALTTIHFIPSIPD 385
Score = 152 bits (386), Expect = 2e-40
Identities = 78/365 (21%), Positives = 130/365 (35%), Gaps = 45/365 (12%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQL--LVIEQNQLEALPSDI-QLFSQLGSLYAN 57
+ + +K + L++ + L + + +L S + + L L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSL 115
N+I + D GL LQV N+ +N + + F L + I LQ N I + +
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV------- 168
L KL L L N LT I + + + LS NK+ N N +
Sbjct: 359 KFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 169 ---------QGVTNIFELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLR-----TISP 212
V ++ L L N + D L +L L N L+ +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKAD 272
D F GL L++L ++HN L +L + L AL L ++ N LT L + L D
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILD 532
Query: 273 LAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNTKIH 332
++ N + A N + S + + N +C+ + I+ + N
Sbjct: 533 ISRNQLLAPNPDV----------FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582
Query: 333 GETIC 337
I
Sbjct: 583 PADIY 587
Score = 145 bits (368), Expect = 5e-38
Identities = 62/309 (20%), Positives = 120/309 (38%), Gaps = 27/309 (8%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYAN 57
L L L+ N ++++ L +LQLL + + L L
Sbjct: 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 58 NNRITSLD-GLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSM--N 112
+++I L +GL L + F ++ +++ F+NL L + L NQI S+ +
Sbjct: 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLH 141
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLSYNKINKFGTRNEGKN-QVQ 169
S L L + S NQ+ ++ L K L L+ N + + + GK
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201
Query: 170 GVTNIFELKLQHNEIENL-------------DGALMGIHGLSRLDLSHNKLRTISPDDFI 216
+ L + N +L+ H + + ++ + F
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261
Query: 217 GLD--SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADL 273
GL S++ LD+SH + +L L L+ L +++N + ++ + F+GL L +L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 274 AHNNIKAIN 282
++N + +
Sbjct: 322 SYNLLGELY 330
Score = 120 bits (302), Expect = 2e-29
Identities = 44/250 (17%), Positives = 82/250 (32%), Gaps = 28/250 (11%)
Query: 58 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSL 115
R +L + + L + + FN I V F L L + L + +
Sbjct: 10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
L L L L +++ D +GL L + L + ++ ++ + + +
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD---GYFRNLKALT 126
Query: 176 ELKLQHNEIENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLD--SLKMLDISHNLL 231
L L N+I +L + ++ L +D S N++ + + L +L ++ N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186
Query: 232 TTLEETSKTFLP------ALEELFVSHNSLTRLDKD-------------FHGLPVLCKAD 272
+ LE L VS N T + A
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG 246
Query: 273 LAHNNIKAIN 282
+NIK +
Sbjct: 247 FGFHNIKDPD 256
Score = 86.0 bits (213), Expect = 3e-18
Identities = 53/253 (20%), Positives = 96/253 (37%), Gaps = 24/253 (9%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANN 58
+ + +FL+ N+L +L T + + L +N+LE L + L L N
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLS---ENRLENLDILYFLLRVPHLQILILNQ 435
Query: 59 NRITSL--DGLLRGLTKLQVFNMDFNQI-----TMVRRDEFQNLHNLDSISLQNNQITSM 111
NR +S D L+ + N + T + D F+ L +L + L +N + S+
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495
Query: 112 -NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF--------GTRN 162
S LT L L L+ N+LT L L +D+S N++ +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLD 553
Query: 163 EGKNQVQGVTNIFEL-KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
N+ + ++ + G I+ + S L ++S + + L
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613
Query: 222 KMLDISHNLLTTL 234
K L S ++ T+
Sbjct: 614 KSLKFSLFIVCTV 626
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 145 bits (367), Expect = 1e-40
Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 11/226 (4%)
Query: 34 EQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 92
Q L+A+P I + ++ + NRI+ + R L + + N + + F
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76
Query: 93 QNLHNLDSISLQNN-QITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
L L+ + L +N Q+ S+ ++ GL +L L+L L E RGL L+ + L
Sbjct: 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRT 209
N + + + + N+ L L N I ++ + A G+H L RL L N++
Sbjct: 137 QDNALQALPD-----DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 210 ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
+ P F L L L + N L+ L + L AL+ L ++ N
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 144 bits (366), Expect = 2e-40
Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 13/225 (5%)
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-S 114
+ ++ G+ ++ + N+I+ V F+ NL + L +N + +++ +
Sbjct: 19 PQQGLQAVPVGIPAASQRI---FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 115 LSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
+GL L L LS N QL GL RL T+ L + + G +G+
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-----PGLFRGLAA 130
Query: 174 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
+ L LQ N ++ L D + L+ L L N++ ++ F GL SL L + N +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Query: 233 TLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHN 276
+ + L L L++ N+L+ L + L L L N
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 135 bits (342), Expect = 4e-37
Identities = 44/234 (18%), Positives = 85/234 (36%), Gaps = 37/234 (15%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----AN 57
+FL+ NR+ + L +L + N L + + F+ L L ++
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA--AFTGLALLEQLDLSD 89
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SL 115
N ++ S+ GL +L ++D + + F+ L L + LQ+N + ++ +
Sbjct: 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
L L +L+L N+++ RGL L + L N++
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH---------------- 193
Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
A + L L L N L + + L +L+ L ++ N
Sbjct: 194 ------------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 100 bits (250), Expect = 4e-24
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
GL L+ L L+ L+ L G L+ LQ L ++ N L+ALP D + L L+ +
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
NRI+S+ + RGL L + N++ V F++L L ++ L N ++++ +L+
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222
Query: 117 GLTKLAYLYLSHNQL 131
L L YL L+ N
Sbjct: 223 PLRALQYLRLNDNPW 237
Score = 31.9 bits (73), Expect = 0.30
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 243 PALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAI 281
A + +F+ N ++ + F L L N + I
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 144 bits (367), Expect = 5e-40
Identities = 68/309 (22%), Positives = 139/309 (44%), Gaps = 27/309 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + L + ++ S++G + L+ L+ L + NQ+ + + +L +LY N+
Sbjct: 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK 99
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
IT + L + LT L+ ++ + I+ + NL + S++L N S S LS +T
Sbjct: 100 ITDISAL-QNLTNLRELYLNEDNISDI--SPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L YL ++ +++ + + I L L ++ L+YN+I + +T++
Sbjct: 157 LNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP-------LASLTSLHYFTAY 207
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N+I ++ + + L+ L + +NK+ +SP L L L+I N ++ +
Sbjct: 208 VNQITDIT-PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKD- 263
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
L L+ L V N ++ + + L L L +N + +++ I GL +
Sbjct: 264 -LTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDME-------VIGGLTNLT 314
Query: 301 RIYLEGNPV 309
++L N +
Sbjct: 315 TLFLSQNHI 323
Score = 144 bits (367), Expect = 5e-40
Identities = 65/279 (23%), Positives = 124/279 (44%), Gaps = 18/279 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L L L++ N++ + L L+ L+ L + ++ + + + +++ SL N
Sbjct: 86 NLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
S L +T L + +++ V NL +L S+SL NQI + S L+ LT
Sbjct: 144 NLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDI-SPLASLTS 200
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L Y NQ+T+ + + + RL ++ + NKI + + ++ + L++
Sbjct: 201 LHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDL-------SPLANLSQLTWLEIG 251
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N+I +++ + + L L++ N++ IS L L L +++N L +
Sbjct: 252 TNQISDINA-VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIG 308
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK 279
L L LF+S N +T + L + AD A+ IK
Sbjct: 309 GLTNLTTLFLSQNHITDIR-PLASLSKMDSADFANQVIK 346
Score = 144 bits (365), Expect = 1e-39
Identities = 56/257 (21%), Positives = 122/257 (47%), Gaps = 17/257 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT+L L+LN + + + L L+K+ L + N + S + + L L ++
Sbjct: 108 NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ + + LT L ++++NQI + +L +L + NQIT + + ++ +T+
Sbjct: 167 VKDVTPI-ANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDI-TPVANMTR 222
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L + +N++T+ L + L +L +++ N+I+ N V+ +T + L +
Sbjct: 223 LNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI-------NAVKDLTKLKMLNVG 273
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N+I ++ L + L+ L L++N+L + GL +L L +S N +T + +
Sbjct: 274 SNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLAS- 331
Query: 241 FLPALEELFVSHNSLTR 257
L ++ ++ + +
Sbjct: 332 -LSKMDSADFANQVIKK 347
Score = 130 bits (329), Expect = 1e-34
Identities = 59/282 (20%), Positives = 123/282 (43%), Gaps = 23/282 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
G L L N++ L++ V+++ + + + + + L +
Sbjct: 1 GAATLATLPAPINQIFPDAD----LAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEK 55
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ S+ G + LT L+ N++ NQIT + NL L ++ + N+IT + S+L LT
Sbjct: 56 VASIQG-IEYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDI-SALQNLTN 111
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L LYL+ + +++ + + L ++ +++L N + + +T + L +
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD------LSPLSNMTGLNYLTVT 163
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
++++++ + + L L L++N++ ISP L SL N +T + +
Sbjct: 164 ESKVKDVT-PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN- 219
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
+ L L + +N +T L L L ++ N I IN
Sbjct: 220 -MTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDIN 259
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 147 bits (372), Expect = 1e-39
Identities = 44/279 (15%), Positives = 101/279 (36%), Gaps = 27/279 (9%)
Query: 40 ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
A+ Q ++ ++ + L + ++ ++ N ++ + + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
+ ++L +N + L L+ L L L++N + E + + T+ + N I++
Sbjct: 61 ELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRV 114
Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIG 217
+ L +N+I L D + LDL N++ T++ +
Sbjct: 115 SCSR--------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166
Query: 218 -LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
D+L+ L++ +N + ++ L+ L +S N L + +F + L +N
Sbjct: 167 SSDTLEHLNLQYNFIYDVKGQ--VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224
Query: 277 NIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSM 315
+ I + + + L GN C
Sbjct: 225 KLVLI--------EKALRFSQNLEHFDLRGNGFHCGTLR 255
Score = 134 bits (338), Expect = 6e-35
Identities = 56/306 (18%), Positives = 102/306 (33%), Gaps = 21/306 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
++ L L+ N L + L +KL+LL + N L D++ S L +L NNN
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN 90
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGL 118
+ L ++ + N I+ V Q N+ L NN+IT +
Sbjct: 91 YVQELL----VGPSIETLHAANNNISRVSCSRGQGKKNIY---LANNKITMLRDLDEGCR 143
Query: 119 TKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
+++ YL L N++ + L ++L YN I + L
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------KGQVVFAKLKTL 196
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N++ + G++ + L +NKL I +L+ D+ N
Sbjct: 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGL 296
F V+ ++ +L V + + A +
Sbjct: 256 D-FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314
Query: 297 NSTLRI 302
++ L
Sbjct: 315 HALLSG 320
Score = 120 bits (302), Expect = 5e-30
Identities = 44/288 (15%), Positives = 93/288 (32%), Gaps = 21/288 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L+ L L LNNN ++ L ++ L N + + ++Y NN+
Sbjct: 78 SLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK 131
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQITSMNSSLSGL 118
IT L D +++Q ++ N+I V E + L+ ++LQ N I + +
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-F 190
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
KL L LS N+L + + + + + L NK+ + ++ N+
Sbjct: 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLI------EKALRFSQNLEHFD 243
Query: 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-----T 233
L+ N ++ ++ ++ + +
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303
Query: 234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+ L + RL+ + + D + +
Sbjct: 304 ADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351
Score = 119 bits (300), Expect = 8e-30
Identities = 29/303 (9%), Positives = 83/303 (27%), Gaps = 6/303 (1%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQ--LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
+ + +L L N + ++ + L+ L ++ N + + + ++L +L ++
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKTLDLSS 200
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
N++ + + + ++ N++ ++ + NL+ L+ N
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFS 259
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELK 178
++ + + + + L
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319
Query: 179 LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
Q +E E L+ +D + RT+ + + L+ L
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379
Query: 239 KTFLPALEELFVSHNSLTRLDKDFHGLP--VLCKADLAHNNIKAINIQLALKTQCQIFGL 296
+ L+ L L +A + + Q + + +
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDM 439
Query: 297 NST 299
Sbjct: 440 YQH 442
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 143 bits (362), Expect = 1e-37
Identities = 59/285 (20%), Positives = 114/285 (40%), Gaps = 16/285 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT+++ L + ++ ++ Q L + + P+ L L +N+
Sbjct: 280 CLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNK 336
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITM--VRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
+ + L L+ ++ N ++ +L + L N + +M+S+ GL
Sbjct: 337 GGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Query: 119 TKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
+L +L H+ L + L+ L +D+S+ G++++ L
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNGLSSLEVL 450
Query: 178 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
K+ N + L + L+ LDLS +L +SP F L SL++L++SHN +L+
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510
Query: 236 ETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV-LCKADLAHNNI 278
L +L+ L S N + K P L +L N+
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 122 bits (309), Expect = 2e-30
Identities = 66/345 (19%), Positives = 116/345 (33%), Gaps = 50/345 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
L+ L+ L L N ++SL G LS LQ LV + L +L + I L L +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 59 NRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMN 112
N I S LT L+ ++ N+I + + + LH + S+ L N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
+L L L +N + ++ I+GL L L + N K +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR--NEGNLEKFDKSAL 251
Query: 172 TNIFELKLQHNEIENLD-------GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
+ L ++ + LD + +S L + + F + L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHL 309
Query: 225 DISHNLLTTLEE-------------------TSKTFLPALEELFVSHNSLTRLD---KDF 262
++ + S+ LP+LE L +S N L+ +
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 263 HGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN 307
G L DL+ N + + GL + + +
Sbjct: 370 FGTTSLKYLDLSFNGVITM--------SSNFLGLEQLEHLDFQHS 406
Score = 122 bits (309), Expect = 2e-30
Identities = 65/311 (20%), Positives = 108/311 (34%), Gaps = 38/311 (12%)
Query: 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL--EALPSDIQLFSQLGSL------YA 56
L L+ N + ++ +L L + N + + IQ + L +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Query: 57 NNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRR---DEFQNLHNLDSISLQNNQITSMN 112
N + D L GL L + + D F L N+ S SL + I +
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV- 297
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIR-------------------GLKRLRTVDLSYN 153
S +L L + + +F ++ L L +DLS N
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
++ G G T++ L L N + + +G+ L LD H+ L+ +S
Sbjct: 358 GLSFKGC---CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 214 D-FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD--FHGLPVLCK 270
F+ L +L LDISH L +LE L ++ NS F L L
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 271 ADLAHNNIKAI 281
DL+ ++ +
Sbjct: 475 LDLSQCQLEQL 485
Score = 121 bits (305), Expect = 5e-30
Identities = 63/299 (21%), Positives = 110/299 (36%), Gaps = 27/299 (9%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNR 60
L L+ N L+ L + +LQ+L + + +++ + Q S L +L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 61 ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSG 117
I SL G GL+ LQ + + +L L +++ +N I S S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLSYNKINKFGTRNEGKNQVQGVTN 173
LT L +L LS N++ D+R L ++ ++DLS N +N K
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKE-----IR 201
Query: 174 IFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLR---TISPDDFIGLDSLKMLDISH 228
+ +L L++N + + G+ GL L + R + D L+ L L I
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 229 NLLTTLEETSKTF------LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
L L+ L + + ++ R+ DF +L +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQF 319
Score = 120 bits (302), Expect = 1e-29
Identities = 61/278 (21%), Positives = 108/278 (38%), Gaps = 17/278 (6%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---NN 58
L L L +N+ + ++ L L+ L + +N L Q SL +
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
N + ++ GL +L+ + + + M F +L NL + + + N +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 117 GLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
GL+ L L ++ N E L DI L+ L +DLS ++ ++++
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-----EQLSPTAFNSLSSLQ 497
Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGL-DSLKMLDISHNLLT- 232
L + HN +LD ++ L LD S N + T + SL L+++ N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Query: 233 TLEETS-KTFLPALEELFVSHNSLT-RLDKDFHGLPVL 268
T E S ++ +L V + D G+PVL
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595
Score = 114 bits (287), Expect = 9e-28
Identities = 61/303 (20%), Positives = 116/303 (38%), Gaps = 33/303 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIE----QNQLEALPSDIQLFSQLGSLY 55
LT+L L L++N+++S+ L L ++ LL + N + + +L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 56 ANNNRIT--SLDGLLRGLTKLQVFNM------DFNQITMVRRDEFQNLHNLDSISLQNNQ 107
NN + + ++GL L+V + + + + + L NL +
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 108 IT----SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
+ + + LT ++ L + + D + ++L K +F T
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLK- 323
Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL--RTISPDDFIGLDSL 221
+ ++ L N+ N + + + L LDLS N L + G SL
Sbjct: 324 -------LKSLKRLTFTSNKGGNA-FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD--FHGLPVLCKADLAHNNIK 279
K LD+S N + T+ L LE L H++L ++ + F L L D++H + +
Sbjct: 376 KYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 280 AIN 282
Sbjct: 435 VAF 437
Score = 104 bits (262), Expect = 2e-24
Identities = 45/236 (19%), Positives = 87/236 (36%), Gaps = 19/236 (8%)
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
+ D L L ++ FN + + F + L + L +I ++ + +
Sbjct: 15 MELNFYKIPDNLPFSTKNL---DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L+ L+ L L+ N + L GL L+ + + + + +
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTL 126
Query: 175 FELKLQHNEIE--NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKM----LDISH 228
EL + HN I+ L + L LDLS NK+++I D L + + LD+S
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 229 NLLTTLEETSKTFLPALEELFVSHNSLTR--LDKDFHGLPVLCKADLAHNNIKAIN 282
N + ++ + + L +L + +N + + GL L L +
Sbjct: 187 NPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Score = 86.6 bits (215), Expect = 2e-18
Identities = 45/184 (24%), Positives = 67/184 (36%), Gaps = 32/184 (17%)
Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ + +L L LS N L L+ +DLS +I
Sbjct: 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-- 66
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
IE DGA + LS L L+ N +++++ F GL
Sbjct: 67 ------------------------IE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNN 277
SL+ L L +LE L L+EL V+HN + + F L L DL+ N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 278 IKAI 281
I++I
Sbjct: 161 IQSI 164
Score = 80.5 bits (199), Expect = 2e-16
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYAN 57
L +L +L +++ + G LS L++L + N + LP L L +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 58 NNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSL 115
++ L L+ LQV NM N + ++ L++L + N I + L
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538
Query: 116 SGL-TKLAYLYLSHNQL--TEFLLDDIRGLKRLRTVDLSYNKI 155
+ LA+L L+ N T ++ +K R + + ++
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 137 bits (347), Expect = 3e-37
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 9/238 (3%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
+L L L +N + ++E +L L+ L + N L L S + S L L
Sbjct: 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG 133
Query: 59 NRITSL--DGLLRGLTKLQVFNMDFN-QITMVRRDEFQNLHNLDSISLQNNQITS-MNSS 114
N +L L LTKLQ+ + T ++R +F L L+ + + + + S S
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L + +++L L Q L + + ++L ++ F + +
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253
Query: 175 FELK---LQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
F + + + + L I GL L+ S N+L+++ F L SL+ + + N
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 136 bits (345), Expect = 7e-37
Identities = 59/290 (20%), Positives = 121/290 (41%), Gaps = 27/290 (9%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L ++PS + + SL +NNRIT + + L+ LQ + N I + D F +
Sbjct: 41 GSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Query: 95 LHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSY 152
L +L+ + L N +++++SS L+ L +L L N + L +L+ + +
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS 211
+ F G+T + EL++ +++++ +L I +S L L + +
Sbjct: 159 M--DTFTKIQRK--DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214
Query: 212 PDDFIGLDSLKMLDISHNLLTTLEET--------SKTFLPALEELFVSHNSLTRLDKDFH 263
S++ L++ L T + S + ++ SL ++ K +
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274
Query: 264 GLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR-IYLEGNPVLCD 312
+ L + + + N +K++ IF ++L+ I+L NP C
Sbjct: 275 QISGLLELEFSRNQLKSV--------PDGIFDRLTSLQKIWLHTNPWDCS 316
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 140 bits (356), Expect = 9e-37
Identities = 57/306 (18%), Positives = 109/306 (35%), Gaps = 32/306 (10%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
+ L L N+L+ G+ KL L + NQ+ +P++ Q+ +L +N+
Sbjct: 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388
Query: 61 ITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQ-------NLHNLDSISLQNNQITSM 111
+ + + ++ + + +N+I V F N+ SI+L NNQI+
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448
Query: 112 -NSSLSGLTKLAYLYLSHNQLTEF-------LLDDIRGLKRLRTVDLSYNKINKFGTRNE 163
S + L+ + L N LTE ++ + L ++DL +NK+ T+
Sbjct: 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL----TKLS 504
Query: 164 GKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL------DLSHNKLRTISPDDFIG 217
+ + + + L +N + L D N+ P+
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564
Query: 218 LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-KDFHGLPVLCKADLAHN 276
SL L I N + + E P + L + N +D L ++
Sbjct: 565 CPSLTQLQIGSNDIRKVNE---KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621
Query: 277 NIKAIN 282
+ I
Sbjct: 622 KTQDIR 627
Score = 140 bits (355), Expect = 1e-36
Identities = 66/310 (21%), Positives = 123/310 (39%), Gaps = 26/310 (8%)
Query: 1 GLTDLNWLFL-NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP---------SDIQLFSQ 50
L DL + + N L L L L ++QL+ + N+ + +D + +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 51 LGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
+ +Y N + + + L+ + KL + +NQ+ F + L S++L NQI
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQI 365
Query: 109 TSMNSSLSG-LTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK- 165
T + ++ G ++ L +HN+L + D + + + +D SYN+I +N
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425
Query: 166 -NQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTIS-------PDDFI 216
N+ + L +N+I LS ++L N L I ++F
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK 485
Query: 217 GLDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
L +D+ N LT L ++ T LP L + +S+NS ++ L + +
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRN 545
Query: 276 NNIKAINIQL 285
N L
Sbjct: 546 QRDAQGNRTL 555
Score = 127 bits (320), Expect = 6e-32
Identities = 49/326 (15%), Positives = 107/326 (32%), Gaps = 29/326 (8%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+ +N + + + L+KL+ + + A I + +
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN--ICEAWENENSEYAQQ-Y 238
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 112
+ D L L + + L + I++ N+ S
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298
Query: 113 SSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
+ K+ +Y+ +N L F + ++ +K+L ++ YN++ G
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE--GKLPA----FGSE 352
Query: 172 TNIFELKLQHNEIENLDGALMGI-HGLSRLDLSHNKLRTISPDDFIG-LDSLKMLDISHN 229
+ L L +N+I + G + L +HNKL+ I + + +D S+N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412
Query: 230 LLTTLEETSKTFLPA-------LEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
+ +++ + L + + +S+N +++ K+ F L +L N + I
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472
Query: 282 NIQLALKTQCQIFGLNSTLRIYLEGN 307
I L N
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFN 498
Score = 95.9 bits (239), Expect = 2e-21
Identities = 41/343 (11%), Positives = 105/343 (30%), Gaps = 45/343 (13%)
Query: 2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---- 56
+ L L + +G L++L++L + + + + + + + +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEK-VNERLFGPKGISANMSDEQK 138
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVR-----RDEFQNLHNLDSISLQNNQITSM 111
R+ + + ++ + I + + I +N IT +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198
Query: 112 NSSLSGLTKLAYLYLSHNQLTEF------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
+ ++ LTKL Y+ ++ ++ ++ +T DL ++ +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258
Query: 166 NQVQGV--------TNIFELKLQHNEIENLDGALMGIHGLS---------RLDLSHNKLR 208
+ + + N + + L+ + + +N L+
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318
Query: 209 TISPDDFIG-LDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRLDKD-FHGL 265
T + + + L ML+ +N L L L +++N +T + +
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS--EIKLASLNLAYNQITEIPANFCGFT 376
Query: 266 PVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
+ AHN +K I ++ I N
Sbjct: 377 EQVENLSFAHNKLKYIPNIF------DAKSVSVMSAIDFSYNE 413
Score = 88.2 bits (219), Expect = 5e-19
Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 33/243 (13%)
Query: 2 LTDLNWLFLNNNRLKSLEG--------QLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLG 52
++ ++ + + N + S++G + + + NQ+ P ++ S L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 53 SLYANNNRITSL--------DGLLRGLTKLQVFNMDFNQITMVRRD-EFQNLHNLDSISL 103
S+ N +T + + + L ++ FN++T + D L L I L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 104 QNNQITSMNSSLSGLTKLAYLYLSH------NQLTEFLLDDIRGLKRLRTVDLSYNKINK 157
N + + + L + + N+ + I L + + N I K
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580
Query: 158 FGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFI 216
+ NI L ++ N ++D + L ++K + I D +
Sbjct: 581 V--------NEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632
Query: 217 GLD 219
+
Sbjct: 633 DIK 635
Score = 67.4 bits (165), Expect = 3e-12
Identities = 18/190 (9%), Positives = 51/190 (26%), Gaps = 14/190 (7%)
Query: 94 NLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTV 148
+ + +SL+ + + ++ LT+L L L + F I
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIH-GLSRLDLSHNKL 207
K + + +++ + + + + I +++ N +
Sbjct: 139 QKMRMHYQKTFVDYDPRED---FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPV 267
+ + L L+ + ++ E D + L
Sbjct: 196 TFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKD 250
Query: 268 LCKADLAHNN 277
L ++ +
Sbjct: 251 LTDVEVYNCP 260
Score = 57.7 bits (140), Expect = 3e-09
Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 5/146 (3%)
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
SL+ ++ L L + + D I L L + L + K R G + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE-KVNERLFGPKGISANMS 134
Query: 174 IFELKLQHNEIENL---DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
+ + + L + ++ + + + N
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194
Query: 231 LTTLEETSKTFLPALEELFVSHNSLT 256
+T + + L L + ++ ++
Sbjct: 195 ITFVSKAVMR-LTKLRQFYMGNSPFV 219
Score = 56.6 bits (137), Expect = 7e-09
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 9/123 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ-------LEALPSDIQLFSQLGS 53
L L + L+ N Q S L+ I + L P I L L
Sbjct: 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570
Query: 54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 113
L +N I ++ + + V ++ N + L ++ +
Sbjct: 571 LQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRG 628
Query: 114 SLS 116
+
Sbjct: 629 CDA 631
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 136 bits (345), Expect = 5e-36
Identities = 71/282 (25%), Positives = 134/282 (47%), Gaps = 22/282 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT L + +NNN++ + L L+ L L + NQ+ + ++ + L L ++N
Sbjct: 88 NLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT 145
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
I+ + L GLT LQ + + NL L+ + + +N+++ + S L+ LT
Sbjct: 146 ISDISA-LSGLTSLQQLSFGNQVTDL---KPLANLTTLERLDISSNKVSDI-SVLAKLTN 200
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L ++NQ+++ + + L L + L+ N++ GT + +TN+ +L L
Sbjct: 201 LESLIATNNQISD--ITPLGILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLA 251
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
+N+I NL L G+ L+ L L N++ ISP GL +L L+++ N L + S
Sbjct: 252 NNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISN- 307
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
L L L + N+++ + L L + +N + ++
Sbjct: 308 -LKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNKVSDVS 347
Score = 135 bits (343), Expect = 1e-35
Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 22/285 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT+LN L L++N + + L L+ LQ L + P + + L L ++N+
Sbjct: 132 NLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNK 188
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
++ + L LT L+ NQI+ + L NLD +SL NQ+ + +L+ LT
Sbjct: 189 VSDISVL-AKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDI-GTLASLTN 244
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L L++NQ++ L + GL +L + L N+I+ + + G+T + L+L
Sbjct: 245 LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNI-------SPLAGLTALTNLELN 295
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N++E++ + + L+ L L N + ISP L L+ L +N ++ + +
Sbjct: 296 ENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLAN- 351
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
L + L HN ++ L L + + L +
Sbjct: 352 -LTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQAWTNAPVNY 394
Score = 133 bits (337), Expect = 6e-35
Identities = 76/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + L + +KS++G + L+ L + NQL + ++ ++L + NNN+
Sbjct: 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ 101
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
I + L LT L + NQIT + D +NL NL+ + L +N I+ + S+LSGLT
Sbjct: 102 IADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTS 157
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L + L + L L +D+S NK++ + +TN+ L
Sbjct: 158 LQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSDISV-------LAKLTNLESLIAT 207
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
+N+I ++ L + L L L+ N+L+ I L +L LD+++N ++ L S
Sbjct: 208 NNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSG- 263
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
L L EL + N ++ + GL L +L N ++ I
Sbjct: 264 -LTKLTELKLGANQISNIS-PLAGLTALTNLELNENQLEDI 302
Score = 132 bits (335), Expect = 2e-34
Identities = 68/285 (23%), Positives = 123/285 (43%), Gaps = 21/285 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
GLT L L N L L+ L+ L I N++ + + + L SL A NN+
Sbjct: 154 GLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ 210
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
I+ + L LT L +++ NQ+ + +L NL + L NNQI+++ + LSGLTK
Sbjct: 211 ISDITPL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-APLSGLTK 266
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L L NQ++ + + GL L ++L+ N++ + + + N+ L L
Sbjct: 267 LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI-------SPISNLKNLTYLTLY 317
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N I ++ + + L RL +NK+ +S L ++ L HN ++ L +
Sbjct: 318 FNNISDISP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTPLAN- 373
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
L + +L ++ + T ++ + +
Sbjct: 374 -LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATI 417
Score = 127 bits (321), Expect = 1e-32
Identities = 64/281 (22%), Positives = 122/281 (43%), Gaps = 22/281 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + L + L ++ L ++ ++++ ++ + L + +NN+
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 79
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+T + L+ LTKL M+ NQI + NL NL ++L NNQIT + L LT
Sbjct: 80 LTDITP-LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITDI-DPLKNLTN 135
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L LS N +++ + + GL L+ + + + +T + L +
Sbjct: 136 LNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDIS 185
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N++ ++ L + L L ++N++ I+P L +L L ++ N L + +
Sbjct: 186 SNKVSDIS-VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLAS- 241
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
L L +L +++N ++ L GL L + L N I I
Sbjct: 242 -LTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNI 280
Score = 41.9 bits (99), Expect = 3e-04
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT++NWL +N++ L L L+++ L + P + + + + N
Sbjct: 351 NLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQIT 85
+ ++ +N +
Sbjct: 410 ALIAPATISDGGSYTEPDITWNLPS 434
Score = 31.1 bits (71), Expect = 0.64
Identities = 9/64 (14%), Positives = 15/64 (23%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT + L LN+ + + V P+ I N
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432
Query: 61 ITSL 64
+
Sbjct: 433 PSYT 436
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 135 bits (342), Expect = 3e-35
Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 23/282 (8%)
Query: 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-FSQLGSLYANNNRITSL 64
L L L+ E + + L ++ + + ++ + L+ +
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301
Query: 65 -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MNSSLSGLT 119
+ L K++ ++ +++ +V Q+L +L+ + L N + ++
Sbjct: 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361
Query: 120 KLAYLYLSHNQLTEF--LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L LS N L + + LK L ++D+S N + + Q + L
Sbjct: 362 SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM------PDSCQWPEKMRFL 415
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L I + + L LD+S+N L + S L L+ L IS N L TL +
Sbjct: 416 NLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLKTLPDA 469
Query: 238 SKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
+ P L + +S N L + F L L K L N
Sbjct: 470 --SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
Score = 132 bits (335), Expect = 3e-34
Identities = 61/338 (18%), Positives = 126/338 (37%), Gaps = 45/338 (13%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSK---------LQLLVIEQNQLEALPSDIQLFSQL 51
L+ + +L L + L + + + + V+ L ++ +L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 52 GSLYANNNRITSLDGLLR------------GLTKLQVFNMDFNQITMVRRDEFQNLHNLD 99
+ ++ + L ++ ++ + + L +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 100 SISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDD---IRGLKRLRTVDLSYNKI 155
I+++N+++ + S L L +L LS N + E L + L+T+ LS N +
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
+ + + N+ L + N + + + L+LS +R +
Sbjct: 374 RSM---QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP 430
Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
+L++LD+S+N L + FLP L+EL++S N L L PVL ++
Sbjct: 431 ---QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTLPDASL-FPVLLVMKISR 482
Query: 276 NNIKAINIQLALKTQCQIFGLNSTLR-IYLEGNPVLCD 312
N +K++ IF ++L+ I+L NP C
Sbjct: 483 NQLKSVPDG--------IFDRLTSLQKIWLHTNPWDCS 512
Score = 131 bits (330), Expect = 1e-33
Identities = 59/329 (17%), Positives = 123/329 (37%), Gaps = 27/329 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
+L L L ++R+ ++E +L L+ L + N L +L S S L L
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107
Query: 59 NRITSL--DGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
N +L L LT LQ + + + +RR +F L +L+ + ++ + + + S
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L + + +L L ++ L L +R ++L + +F ++V
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227
Query: 175 FELKLQH------NEIENLDGALMGIHGLSRLDLSHNKLRTISPDD--------FIGLDS 220
+ NE+ L ++ + + D + N L +P + + +
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287
Query: 221 LKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIK 279
++ L I L T + L ++ + V ++ + + L L DL+ N +
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347
Query: 280 AINIQLALKTQCQIFGLNSTLR-IYLEGN 307
++ G +L+ + L N
Sbjct: 348 EEYLK-----NSACKGAWPSLQTLVLSQN 371
Score = 127 bits (321), Expect = 2e-32
Identities = 44/305 (14%), Positives = 106/305 (34%), Gaps = 24/305 (7%)
Query: 1 GLTDLNWLFL-NNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYAN 57
LT+L L + N + L+ L L I+ L S ++ + L +
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ--------- 107
+ L + L+ ++ + + + + +
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240
Query: 108 --ITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKFGTRN 162
+ + + L+++ + + N L +F D + L ++ TV + I +F
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300
Query: 163 EGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTI---SPDDFIGL 218
+ + + + ++++++ + + L LDLS N + +
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360
Query: 219 DSLKMLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHN 276
SL+ L +S N L ++++T + L L L +S N+ + + +L+
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST 420
Query: 277 NIKAI 281
I+ +
Sbjct: 421 GIRVV 425
Score = 117 bits (295), Expect = 8e-29
Identities = 45/306 (14%), Positives = 109/306 (35%), Gaps = 31/306 (10%)
Query: 2 LTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNN 59
+ L L+ N++ + G L + LQ+L+++ +++ + D L L ++N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMV-RRDEFQNLHNLDSISLQNNQITSM--NSSL 115
++SL L+ L+ N+ N + F NL NL ++ + N + S
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
+GLT L L + L + ++ ++ + + L ++ + ++++
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL-----LEIFADILSSVR 199
Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL------------- 221
L+L+ + L S + + ++ + F L L
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259
Query: 222 -----KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAH 275
+ D + + + E K + L + L + L + + + +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 276 NNIKAI 281
+ + +
Sbjct: 320 SKVFLV 325
Score = 116 bits (293), Expect = 1e-28
Identities = 42/238 (17%), Positives = 84/238 (35%), Gaps = 12/238 (5%)
Query: 49 SQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
G + TS+ GL + L ++ FN+IT + + + NL + L++++
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 108 ITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN 166
I ++ + L L +L LS N L+ L L+ ++L N G +
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL--- 118
Query: 167 QVQGVTNIFELKLQH-NEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
+TN+ L++ + + G+ L+ L++ LR + + L
Sbjct: 119 -FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL 177
Query: 225 DISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDK-DFHGLPVLCKADLAHNNIKAI 281
+ + L E L ++ L + +L R V +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
Score = 115 bits (289), Expect = 5e-28
Identities = 41/279 (14%), Positives = 97/279 (34%), Gaps = 18/279 (6%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 67
+ S+ L + ++ L + N++ + D++ + L L ++RI +++
Sbjct: 12 GRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLY 125
L L+ ++ N ++ + F L +L ++L N ++ S LT L L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 126 LSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184
+ + +E D GL L +++ + + ++ + +I L L +E
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-----QSQSLKSIRDIHHLTLHLSES 184
Query: 185 ENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLP 243
L + + + L+L L + + + L + S L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 244 ALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
L + + + F + D + ++
Sbjct: 245 KLLRYILELSEVE-----FDDCTLNGLGDFNPSESDVVS 278
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 135 bits (341), Expect = 5e-35
Identities = 50/260 (19%), Positives = 108/260 (41%), Gaps = 14/260 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT+++ L + ++ ++ Q L + + P+ L L +N+
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNK 336
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSGL 118
+ + L L+ ++ N ++ +L + L N + +M+S+ GL
Sbjct: 337 GGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395
Query: 119 TKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
+L +L H+ L + L+ L +D+S+ G++++ L
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-----NGIFNGLSSLEVL 450
Query: 178 KLQHNEIEN--LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
K+ N + L + L+ LDLS +L +SP F L SL++L+++ N L ++
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Query: 236 ETSKTFLPALEELFVSHNSL 255
+ L +L+++++ N
Sbjct: 511 DGIFDRLTSLQKIWLHTNPW 530
Score = 128 bits (323), Expect = 1e-32
Identities = 60/288 (20%), Positives = 103/288 (35%), Gaps = 20/288 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGT----LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA 56
GL +L L + L+ + + +E + D L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLEL 311
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM---NS 113
N + L L L+ N+ +L +L+ + L N ++ +
Sbjct: 312 VNCKFGQFPTL--KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
S G T L YL LS N + + + GL++L +D ++ + + + + N
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRN 422
Query: 174 IFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL-RTISPDDFIGLDSLKMLDISHNLL 231
+ L + H +G G+ L L ++ N PD F L +L LD+S L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 232 TTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
L T+ L +L+ L ++ N L + F L L K L N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 127 bits (320), Expect = 3e-32
Identities = 64/294 (21%), Positives = 112/294 (38%), Gaps = 27/294 (9%)
Query: 5 LNWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQLEALPS----DIQLFSQLGSLYANN 58
L+ L L NN ++ + L+ L++ + + + D L +L
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 59 NRITSLD-------GLLRGLTKLQVFNMDFNQITMVRRDEFQ-NLHNLDSISLQNNQITS 110
R+ LD L LT + F++ I V+ + +L+ ++ + Q +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 111 MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQG 170
+ L L L + N+ L L +DLS N ++ G + G
Sbjct: 322 LK-----LKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCS---QSDFG 371
Query: 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHN 229
T++ L L N + + +G+ L LD H+ L+ +S F+ L +L LDISH
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTR--LDKDFHGLPVLCKADLAHNNIKAI 281
L +LE L ++ NS L F L L DL+ ++ +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Score = 124 bits (314), Expect = 2e-31
Identities = 68/343 (19%), Positives = 121/343 (35%), Gaps = 46/343 (13%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 58
L+ L+ L L N ++SL G LS LQ LV + L +L + I L L +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 59 NRITSLD--GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMN 112
N I S LT L+ ++ N+I + + + LH + S+ L N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKI---NKFGTRNEGKNQV 168
+L L L +N + ++ I+GL L L + ++ +
Sbjct: 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 169 QGVTNIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDF----------- 215
I E +L + + +++ + +S L + + +
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVN 313
Query: 216 --------IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD---KDFHG 264
+ L SLK L + N S+ LP+LE L +S N L+ + G
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 265 LPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGN 307
L DL+ N + + GL + + +
Sbjct: 372 TTSLKYLDLSFNGVITM--------SSNFLGLEQLEHLDFQHS 406
Score = 123 bits (311), Expect = 6e-31
Identities = 75/362 (20%), Positives = 125/362 (34%), Gaps = 63/362 (17%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNR 60
L L+ N L+ L + +LQ+L + + +++ + Q S L +L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSG 117
I SL G GL+ LQ + + +L L +++ +N I S S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLR----TVDLSYNKINK---------------- 157
LT L +L LS N++ D+R L ++ ++DLS N +N
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 158 ---FGTRNEGKNQVQGVTNIFELKLQHNEIENL-------DGALMGIHGLSRLDLSHNKL 207
F + N K +QG+ + +L E N AL G+ L+ + L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 208 RTIS---PDDFIGLDSLKMLDISHNLLTTLEETSKTF-------------------LPAL 245
D F L ++ + + +++ S F L +L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327
Query: 246 EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLE 305
+ L + N LP L DL+ N + FG S + L
Sbjct: 328 KRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGC-----CSQSDFGTTSLKYLDLS 381
Query: 306 GN 307
N
Sbjct: 382 FN 383
Score = 121 bits (306), Expect = 3e-30
Identities = 60/301 (19%), Positives = 111/301 (36%), Gaps = 31/301 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-----QLFSQLGS 53
L L L + +N ++S + L+ L+ L + N+++++ Q+ S
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181
Query: 54 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSISLQNNQITSMN 112
L + N + + +L + N ++ V + Q L L+ L + +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Query: 113 -------SSLSGLTKLAYLYLSHNQLTEFLLDDI---RGLKRLRTVDLSYNKINKFGTRN 162
S+L GL L L +L D I L + + L I +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---- 297
Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
L+L + + + + L RL + NK + L SL+
Sbjct: 298 ---KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFS--EVDLPSLE 350
Query: 223 MLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKA 280
LD+S N L+ S++ +L+ L +S N + + +F GL L D H+N+K
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 281 I 281
+
Sbjct: 411 M 411
Score = 121 bits (305), Expect = 3e-30
Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 23/262 (8%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+P ++ +L + N + L +LQV ++ +I + +Q+
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 95 LHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L +L ++ L N I S+ + SGL+ L L L I LK L+ +++++N
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLS----RLDLSHNKLR 208
I F +TN+ L L N+I+++ L +H + LDLS N +
Sbjct: 135 LIQSFKLPEY----FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 209 TISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFLPALEEL------FVSHNSLTRLDKD 261
I P F + L L + +N + + +T L LE F + +L + DK
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 262 FHGLPVLCKADLAHNNIKAINI 283
L LC + + ++
Sbjct: 250 A--LEGLCNLTIEEFRLAYLDY 269
Score = 116 bits (292), Expect = 2e-28
Identities = 64/297 (21%), Positives = 100/297 (33%), Gaps = 35/297 (11%)
Query: 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---------Y 55
L L+ N + ++ +L L + N L L L +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS-LNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 56 ANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDE---FQNLHNLDSISLQNNQITSM 111
N + D L GL L + + D F L N+ S SL + I +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 112 N--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
S G L + Q LK L+ + + NK +
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTL------KLKSLKRLTFTSNKGGNAFSE-------V 344
Query: 170 GVTNIFELKLQHNEIENLD---GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
+ ++ L L N + + G L LDLS N + T+ +F+GL+ L+ LD
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDF 403
Query: 227 SHNLLTTLEETSK-TFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
H+ L + E S L L L +SH F+GL L +A N+ +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Score = 101 bits (253), Expect = 3e-23
Identities = 36/161 (22%), Positives = 65/161 (40%), Gaps = 5/161 (3%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL--FSQLGSLYANN 58
G T L +L L+ N + ++ L +L+ L + + L+ + L L ++
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSL 115
+G+ GL+ L+V M N D F L NL + L Q+ + ++
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ L+ L L ++ NQL L L+ + L N +
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 86.7 bits (215), Expect = 1e-18
Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 32/184 (17%)
Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ + +L L LS N L L+ +DLS +I
Sbjct: 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
DGA + LS L L+ N +++++ F GL
Sbjct: 69 ----------------------------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD--KDFHGLPVLCKADLAHNN 277
SL+ L L +LE L L+EL V+HN + + F L L DL+ N
Sbjct: 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Query: 278 IKAI 281
I++I
Sbjct: 161 IQSI 164
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 121 bits (305), Expect = 7e-32
Identities = 52/235 (22%), Positives = 90/235 (38%), Gaps = 36/235 (15%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYANN 58
L L+ N L+ L + +LQ+L + + +++ + + L L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA--YQSLSHLSTLILTG 85
Query: 59 NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSL 115
N I SL G GL+ LQ + + +L L +++ +N I S +
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
S LT L +L LS N++ D+R L ++ ++L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------------------------- 180
Query: 176 ELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
L L N + + GA I L L L N+L+++ F L SL+ + + N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 115 bits (291), Expect = 8e-30
Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 14/223 (6%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
+P ++ +L + N + L +LQV ++ +I + +Q+L
Sbjct: 19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 97 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+L ++ L N I S+ SGL+ L L L I LK L+ +++++N I
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGL----SRLDLSHNKLRTI 210
F + +TN+ L L N+I+++ L +H + LDLS N + I
Sbjct: 137 QSF----KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
P F + LK L + N L ++ + L +L+++++ N
Sbjct: 193 QPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 98.5 bits (246), Expect = 1e-23
Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 8/161 (4%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
L+ L+ L L N ++SL G LS LQ LV + L +L + L L +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133
Query: 59 NRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMN 112
N I S LT L+ ++ N+I + + + LH + S+ L N + +
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
+L L L NQL L L+ + L N
Sbjct: 194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 75.0 bits (185), Expect = 2e-15
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLS 203
+ +DLS+N + G+ + L L EI+ + DGA + LS L L+
Sbjct: 30 TKNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84
Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-- 261
N +++++ F GL SL+ L L +LE L L+EL V+HN +
Sbjct: 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 262 FHGLPVLCKADLAHNNIKAI 281
F L L DL+ N I++I
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI 164
Score = 41.9 bits (99), Expect = 2e-04
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
S K LD+S N L L S P L+ L +S + ++ + L L L N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 279 KAI 281
+++
Sbjct: 89 QSL 91
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 124 bits (312), Expect = 5e-31
Identities = 76/284 (26%), Positives = 115/284 (40%), Gaps = 40/284 (14%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+ L + +N L SL L L++ NQL +LP L L L +N +
Sbjct: 60 PAHITTLVIPDNNLTSLPALPPELRTLEV---SGNQLTSLP---VLPPGLLELSIFSNPL 113
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T L L GL KL +F NQ+T + L L + +NQ+ S+ + S L K
Sbjct: 114 THLPALPSGLCKLWIFG---NQLTSL-PVLPPGLQELS---VSDNQLASLPALPSELCK- 165
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
L+ +NQLT L GL+ L +S N++ T + +++L +
Sbjct: 166 --LWAYNNQLTS-LPMLPSGLQEL---SVSDNQLASLPT---------LPSELYKLWAYN 210
Query: 182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
N + +L GL L +S N+L ++ LK L +S N LT+L
Sbjct: 211 NRLTSLPA---LPSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPML---- 259
Query: 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
L L V N LTRL + L +L N + +Q
Sbjct: 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 303
Score = 119 bits (301), Expect = 1e-29
Identities = 69/328 (21%), Positives = 112/328 (34%), Gaps = 41/328 (12%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+L L ++ N+L SL L +L + L ALP S L L+ N++
Sbjct: 80 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
TSL L GL +L V + + L L NNQ+TS+ SGL +
Sbjct: 134 TSLPVLPPGLQELSVSDNQLASLP----ALPSELCKLW---AYNNQLTSLPMLPSGLQE- 185
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
L +S NQL L L +L N++ + + EL +
Sbjct: 186 --LSVSDNQLAS-LPTLPSELYKL---WAYNNRLTSL---------PALPSGLKELIVSG 230
Query: 182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
N + +L L L +S N+L ++ L L + N LT L E S
Sbjct: 231 NRLTSLPVL---PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIH 282
Query: 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR 301
L + + + N L+ + A I ++ A + + L+
Sbjct: 283 LSSETTVNLEGNPLSERTLQALRE--ITSAPGYSGPIIRFDMAGASAPR-ETRALHLAAA 339
Query: 302 IYLEGNPVLCDDSMRAVIDAMETINNNT 329
+L + + +N
Sbjct: 340 DWLVPAR-EGEPAPADRWHMFGQEDNAD 366
Score = 111 bits (279), Expect = 9e-27
Identities = 67/298 (22%), Positives = 108/298 (36%), Gaps = 55/298 (18%)
Query: 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
+ +L + ++ L LP + + + +L +N +TSL L L L + NQ+
Sbjct: 39 NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTL---EVSGNQL 93
Query: 85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL--------------TKLAYLYLSHNQ 130
T + L L S + ++ S L L L L +S NQ
Sbjct: 94 TSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152
Query: 131 LTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGA 190
L L L +L N++ + + EL + N++ +L
Sbjct: 153 LAS-LPALPSELCKL---WAYNNQLTSLPM---------LPSGLQELSVSDNQLASLPT- 198
Query: 191 LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFV 250
L +L +N+L ++ LK L +S N LT+L L+EL V
Sbjct: 199 --LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLPV----LPSELKELMV 248
Query: 251 SHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
S N LT L GL L + N + + + L+S + LEGNP
Sbjct: 249 SGNRLTSLPMLPSGLLSL---SVYRNQLTRL--------PESLIHLSSETTVNLEGNP 295
Score = 101 bits (253), Expect = 2e-23
Identities = 46/251 (18%), Positives = 89/251 (35%), Gaps = 40/251 (15%)
Query: 34 EQNQLEALPSDIQ--LFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRD 90
E A+ ++ L + L + +T+L D L +T L + + + +
Sbjct: 23 ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP----A 78
Query: 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
L L+ + NQ+TS+ GL +L+ L L + +
Sbjct: 79 LPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWI 128
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
N++ + EL + N++ +L L +L +N+L ++
Sbjct: 129 FGNQLTSLPV---------LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSL 176
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
L+ L +S N L +L L +L+ +N LT L GL L
Sbjct: 177 PML----PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPALPSGLKEL-- 226
Query: 271 ADLAHNNIKAI 281
++ N + ++
Sbjct: 227 -IVSGNRLTSL 236
Score = 73.8 bits (181), Expect = 3e-14
Identities = 36/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
++L L+ NNRL SL L +L + N+L +LP S+L L + NR
Sbjct: 199 LPSELYKLWAYNNRLTSLPALPSGLKELIV---SGNRLTSLPVLP---SELKELMVSGNR 252
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+TSL L GL L V+ NQ+T + + +L + +++L+ N ++ +
Sbjct: 253 LTSLPMLPSGLLSLSVYR---NQLTRL-PESLIHLSSETTVNLEGNPLSERTLQAL--RE 306
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
+ + F + + R + L+
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLA 337
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 117 bits (296), Expect = 2e-30
Identities = 47/248 (18%), Positives = 101/248 (40%), Gaps = 18/248 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + + + + L + L + + +Q + L L +N+
Sbjct: 17 ALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ 74
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
IT L L+ LTK+ + N + V L ++ ++ L + QIT + + L+GL+
Sbjct: 75 ITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-TPLAGLSN 130
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L LYL NQ+T + + GL L+ + + +++ + ++ + LK
Sbjct: 131 LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL-------TPLANLSKLTTLKAD 181
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
N+I ++ L + L + L +N++ +SP +L ++ +++ +T
Sbjct: 182 DNKISDISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 241 FLPALEEL 248
L +
Sbjct: 239 NLVVPNVV 246
Score = 113 bits (285), Expect = 8e-29
Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 19/236 (8%)
Query: 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
+ + A + +T L + + +T + + Q L+NL + L++NQ
Sbjct: 18 LANAIKIAAGKSNVTDTVTQ-ADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQ 74
Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
IT + + L LTK+ L LS N L + I GL+ ++T+DL+ +I
Sbjct: 75 ITDL-APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDV-------TP 124
Query: 168 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
+ G++N+ L L N+I N+ L G+ L L + + ++ ++P L L L
Sbjct: 125 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKAD 181
Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI 283
N ++ + + LP L E+ + +N ++ + L L + I +
Sbjct: 182 DNKISDISPLAS--LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234
Score = 109 bits (273), Expect = 4e-27
Identities = 53/238 (22%), Positives = 103/238 (43%), Gaps = 16/238 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + L + ++EG + L+ L L ++ NQ+ L L +++ L + N
Sbjct: 39 DLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNL-TKITELELSGNP 96
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ ++ + GL ++ ++ QIT V L NL + L NQIT++ S L+GLT
Sbjct: 97 LKNVSAI-AGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-SPLAGLTN 152
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L YL + + Q+++ L + L +L T+ NKI+ + + + N+ E+ L+
Sbjct: 153 LQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISDI-------SPLASLPNLIEVHLK 203
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
+N+I ++ L L + L++ + L ++ S
Sbjct: 204 NNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATIS 260
Score = 90.5 bits (225), Expect = 1e-20
Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L N I+ + +T + + L + L +T ++ ++ L L ++L N
Sbjct: 17 ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
+I ++ +T I EL+L N ++N+ + G+ + LDL+ ++ ++P
Sbjct: 74 QITDL-------APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP- 124
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
GL +L++L + N +T + + L L+ L + + ++ L L L
Sbjct: 125 -LAGLSNLQVLYLDLNQITNISPLAG--LTNLQYLSIGNAQVSDLT-PLANLSKLTTLKA 180
Query: 274 AHNNIKAI 281
N I I
Sbjct: 181 DDNKISDI 188
Score = 62.4 bits (152), Expect = 5e-11
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
GLT+L +L + N ++ L L LSKL L + N++ + S + L ++ NN+
Sbjct: 149 GLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQ 206
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
I+ + L + L + + IT NL + + + + + T
Sbjct: 207 ISDVSPL-ANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 116 bits (293), Expect = 4e-30
Identities = 51/252 (20%), Positives = 104/252 (41%), Gaps = 18/252 (7%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
+K + ++ +++ + + + + ANN+ I S+ G+
Sbjct: 7 TITVPTPIKQIFS-DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGI 64
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
+ L + ++ N++T + NL NL + L N++ + SSL L KL L L
Sbjct: 65 -QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
HN +++ ++ + L +L ++ L NKI + +T + L L+ N+I ++
Sbjct: 121 HNGISD--INGLVHLPQLESLYLGNNKITDI-------TVLSRLTKLDTLSLEDNQISDI 171
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEE 247
L G+ L L LS N + + GL +L +L++ ++ L
Sbjct: 172 VP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228
Query: 248 LFVSHNSLTRLD 259
+ + SL +
Sbjct: 229 VKNTDGSLVTPE 240
Score = 111 bits (279), Expect = 5e-28
Identities = 51/238 (21%), Positives = 100/238 (42%), Gaps = 16/238 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
+ L + L+ + ++ + ++++ IQ + L+ N N+
Sbjct: 22 AFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK 79
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+T + L L L +D N++ + ++L L S+SL++N I+ + + L L +
Sbjct: 80 LTDIKPL-ANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 135
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L LYL +N++T+ + + L +L T+ L N+I+ + G+T + L L
Sbjct: 136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-------VPLAGLTKLQNLYLS 186
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETS 238
N I +L L G+ L L+L + + L + + L T E S
Sbjct: 187 KNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 243
Score = 108 bits (272), Expect = 4e-27
Identities = 59/242 (24%), Positives = 113/242 (46%), Gaps = 18/242 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L ++ + NN+ +KS++G + L + L + N+L + L LG L+ + N+
Sbjct: 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENK 101
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ L L + L KL+ +++ N I+ + + +L L+S+ L NN+IT + + LS LTK
Sbjct: 102 VKDLSSL-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTK 157
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L L NQ+++ + + GL +L+ + LS N I+ + G+ N+ L+L
Sbjct: 158 LDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL-------RALAGLKNLDVLELF 208
Query: 181 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
E N + + + + L ++P+ + ++ +L E S
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSF 266
Query: 240 TF 241
F
Sbjct: 267 IF 268
Score = 104 bits (261), Expect = 1e-25
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 19/232 (8%)
Query: 31 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
+ ++ + SD ++ +T L + + + I V
Sbjct: 7 TITVPTPIKQIFSDDAF-AETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV--Q 62
Query: 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
Q L N+ + L N++T + L+ L L +L+L N++ + L ++ LK+L+++ L
Sbjct: 63 GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKD--LSSLKDLKKLKSLSL 119
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
+N I+ N + + + L L +N+I ++ L + L L L N++ I
Sbjct: 120 EHNGISDI-------NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI 171
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDF 262
P GL L+ L +S N ++ L + L L+ L + +
Sbjct: 172 VP--LAGLTKLQNLYLSKNHISDLRALAG--LKNLDVLELFSQECLNKPINH 219
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 118 bits (298), Expect = 1e-29
Identities = 74/388 (19%), Positives = 136/388 (35%), Gaps = 42/388 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT L +L + N+L L+ + L L +N L + D+ +QL L + N+
Sbjct: 104 PLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNK 159
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ + T+L + FN+IT + + L+ ++ N IT ++ L+ +
Sbjct: 160 KITKLDV-TPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLD--LNQNIQ 213
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L +L S N+LTE D+ L +L D S N + + V ++ + L
Sbjct: 214 LTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTEL--------DVSTLSKLTTLHCI 262
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
++ +D L L + I D L +LD +T L+ +
Sbjct: 263 QTDLLEID--LTHNTQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAGITELDLSQ-- 316
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTL 300
P L L++++ LT L D L + +I+ + + + +
Sbjct: 317 -NPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFS---------SVGKIPALN 364
Query: 301 RIYLEGNPVLCDDSMRAVIDAMETINNNTKI---HGETICQPDSNETSTTTTTTTTTTPE 357
+ + +++ + + +P T T T
Sbjct: 365 NNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424
Query: 358 PTPAPTSTTTQRSTTSTTTQTPTTPIQE 385
T P T T S T TTP +
Sbjct: 425 STDNPAVTYTFTSENGAIVGTVTTPFEA 452
Score = 117 bits (294), Expect = 5e-29
Identities = 69/306 (22%), Positives = 110/306 (35%), Gaps = 29/306 (9%)
Query: 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 65
+ + + L+ L L + + + I+ + L L +N IT+LD
Sbjct: 22 SEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD 80
Query: 66 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 125
L T L D N++T + + L L ++ N++T ++ +S L YL
Sbjct: 81 --LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
+ N LTE D+ +L +D NK V T + L N+I
Sbjct: 134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKLD-------VTPQTQLTTLDCSFNKIT 183
Query: 186 NLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPAL 245
LD + L+RL+ N + + D L LD S N LT ++ T L L
Sbjct: 184 ELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTP---LTQL 235
Query: 246 EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI-QLALKTQCQIFGLNSTLRIYL 304
S N LT L D L L ++ I++ Q G + +
Sbjct: 236 TYFDCSVNPLTEL--DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDV 293
Query: 305 EGNPVL 310
N L
Sbjct: 294 THNTQL 299
Score = 110 bits (278), Expect = 6e-27
Identities = 56/302 (18%), Positives = 101/302 (33%), Gaps = 47/302 (15%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT L L +N + +L+ L + L L + N+L L + ++L L + N+
Sbjct: 62 KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMV-------------------RRDEFQNLHNLDSI 101
+T LD + L N N +T + + + L ++
Sbjct: 118 LTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTL 175
Query: 102 SLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 161
N+IT ++ +S L L N +T+ D+ +L +D S NK+ +
Sbjct: 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI--- 227
Query: 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
V +T + N + LD + + L+ L L I D L
Sbjct: 228 -----DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEI---DLTHNTQL 277
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+ + L L +T L D P L L + + +
Sbjct: 278 IYFQAEGCRKIKELDVTH--NTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTEL 333
Query: 282 NI 283
++
Sbjct: 334 DV 335
Score = 99.0 bits (247), Expect = 8e-23
Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 26/236 (11%)
Query: 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
F+ + ++ L L + + IT + + L L + +N
Sbjct: 20 FASEVAAAFEMQATDTIS--EEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75
Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
IT+++ LS T L YL N+LT D+ L +L ++ NK+ K
Sbjct: 76 ITTLD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL--------D 122
Query: 168 VQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDIS 227
V + L N + +D + L+ LD NK I+ D L LD S
Sbjct: 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCS 178
Query: 228 HNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI 283
N +T L+ + L L N++T+L D + L D + N + I++
Sbjct: 179 FNKITELDVSQ---NKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEIDV 229
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 111 bits (280), Expect = 9e-28
Identities = 40/233 (17%), Positives = 79/233 (33%), Gaps = 18/233 (7%)
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NS 113
+++T + L R +L ++ ++++ F +L+ I + N + +
Sbjct: 17 QESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 114 SLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
S L KL + + N L + + L L+ + +S I +
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-----KIHSL 128
Query: 173 NIFELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
L +Q N I + + +G+ S L L+ N ++ I F G ++ +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188
Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
L L L +S + L L L N+K +
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 239
Score = 106 bits (265), Expect = 9e-26
Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 22/238 (9%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ-LEALPSDIQLFSQLGSL----YA 56
+ L +L+ + +G L+ + I QN LE + +D+ FS L L
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV--FSNLPKLHEIRIE 87
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQITSM-NS 113
N + + + L LQ + I + + + +Q N I ++ +
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147
Query: 114 SLSGLT-KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
S GL+ + L+L+ N + E G + N + + + G +
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL-----PNDVFHGAS 202
Query: 173 NIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
L + I +L L + L + K L +L +++
Sbjct: 203 GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256
Score = 88.7 bits (220), Expect = 9e-20
Identities = 32/161 (19%), Positives = 59/161 (36%), Gaps = 7/161 (4%)
Query: 1 GLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS-QLGSLY-A 56
L L+ + + N L + L LQ L+I ++ LP ++ S Q L
Sbjct: 77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136
Query: 57 NNNRITSL-DGLLRGLT-KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NS 113
+N I ++ GL+ + + ++ N I + F + NN + + N
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
G + L +S ++ + LK+LR K
Sbjct: 197 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
Score = 88.3 bits (219), Expect = 1e-19
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 10/159 (6%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN-QLEALPSDI--QLFSQLGSLYA 56
L +L +L ++N +K L + + LL I+ N + + + L + L+
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
N N I + + G ++ D N + + D F + + +I S+ +
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG 221
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L KL + + L + L L L+Y
Sbjct: 222 LENLKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 110 bits (277), Expect = 9e-28
Identities = 65/303 (21%), Positives = 113/303 (37%), Gaps = 24/303 (7%)
Query: 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
E + + ++ +T++ L T L+LS N L F L + RL ++L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
++ K + + L L HN++++L + L+ LD+S N+L ++
Sbjct: 63 DRAELTKLQVDG-------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLC 269
GL L+ L + N L TL T P LE+L +++N+LT L +GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 270 KADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNT 329
L N++ I FG + +L GNP LC+ + + +N
Sbjct: 176 TLLLQENSLYTI--------PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRW---LQDNA 224
Query: 330 KIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTE 389
+ D ++ + + P T T + + Y E
Sbjct: 225 ENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGK---GCPTLGDEGDTDLYDYYPE 281
Query: 390 TIT 392
T
Sbjct: 282 EDT 284
Score = 110 bits (276), Expect = 9e-28
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 3/155 (1%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
D L L+ N L + L ++L L +++ +L L D L LG+L ++N++
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQL 89
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
SL L + L L V ++ FN++T + + L L + L+ N++ ++ L+ K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
L L L++N LTE + GL+ L T+ L N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 104 bits (262), Expect = 8e-26
Identities = 55/222 (24%), Positives = 88/222 (39%), Gaps = 38/222 (17%)
Query: 35 QNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQ 93
+ L ALP D+ L+ + N + + L T+L N+D ++T +
Sbjct: 19 KRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDG 74
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+
Sbjct: 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ------- 127
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISP 212
EL L+ NE++ L G L L +L L++N L +
Sbjct: 128 ----------------------ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 213 DDFIGLDSLKMLDISHNLLTTLEETSKTF-LPALEELFVSHN 253
GL++L L + N L T+ + F L F+ N
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKG--FFGSHLLPFAFLHGN 205
Score = 102 bits (257), Expect = 4e-25
Identities = 50/155 (32%), Positives = 68/155 (43%), Gaps = 4/155 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
T L L L+ L L+ GTL L L + NQL++LP Q L L + NR
Sbjct: 53 PYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR 111
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
+TSL G LRGL +LQ + N++ + L+ +SL NN +T + L+GL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L L N L + G L L N
Sbjct: 172 ENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 112 bits (283), Expect = 2e-27
Identities = 51/284 (17%), Positives = 99/284 (34%), Gaps = 31/284 (10%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+ + + + L + L +LP L SL A+ N +
Sbjct: 47 ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSL 103
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T L L + L L V N + ++ L+ + + NNQ+ + L + L
Sbjct: 104 TELPELPQSLKSLLVDNNNLKALS-------DLPPLLEYLGVSNNQLEKL-PELQNSSFL 155
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
+ + +N L + L + N++ + ++Q + + + +
Sbjct: 156 KIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEEL-------PELQNLPFLTAIYADN 204
Query: 182 NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF 241
N ++ L L + +N L + + L L + +NLL TL +
Sbjct: 205 NSLKKLPD---LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKTLPDL---- 255
Query: 242 LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
P+LE L V N LT L + L L ++ + + + L
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 299
Score = 108 bits (271), Expect = 6e-26
Identities = 56/281 (19%), Positives = 106/281 (37%), Gaps = 40/281 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L ++ NN+L+ L +L L L + + N L+ LP L S+ A NN
Sbjct: 171 LPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI 226
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ L L + L L D N + + +L+++++++N +T + LT
Sbjct: 227 LEELPEL-QNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDLPELPQSLTF 281
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L + L+E L ++ S N+I ++ EL +
Sbjct: 282 LDVSENIFSGLSEL-------PPNLYYLNASSNEIRSL---------CDLPPSLEELNVS 325
Query: 181 HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
+N++ L L RL S N L + +LK L + +N L +
Sbjct: 326 NNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDI--- 375
Query: 241 FLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
++E+L ++ + L + + L L + N ++
Sbjct: 376 -PESVEDLRMN-SHLAEVPELPQNLKQL---HVETNPLREF 411
Score = 107 bits (269), Expect = 1e-25
Identities = 63/305 (20%), Positives = 110/305 (36%), Gaps = 46/305 (15%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
+ L + ++NN LK L +L + NQLE LP ++Q L ++YA+NN
Sbjct: 151 NSSFLKIIDVDNNSLKKLPDLPPSLEFIAA---GNNQLEELP-ELQNLPFLTAIYADNNS 206
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+ L L L + N N + + E QNL L +I NN + ++ L
Sbjct: 207 LKKLPDLPLSLESIVAGN---NILEEL--PELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT--------RNEGKNQVQGVT 172
L + N LT+ L + + L L + ++ +++ NE ++
Sbjct: 262 L---NVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 317
Query: 173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
++ EL + +N++ L L RL S N L + +LK L + +N L
Sbjct: 318 SLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLR 370
Query: 233 TLEE---------------TSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNN 277
+ L++L V N L + L +
Sbjct: 371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL---RMNSER 427
Query: 278 IKAIN 282
+
Sbjct: 428 VVDPY 432
Score = 100 bits (252), Expect = 2e-23
Identities = 54/272 (19%), Positives = 99/272 (36%), Gaps = 47/272 (17%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + NN L+ L +L L L + + N L+ LP L +L +N
Sbjct: 213 LPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNY 268
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
+T L L + LT L V F+ ++ + NL ++ +N+I S+ L +
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLS-------ELPPNLYYLNASSNEIRSLCDLPPSLEE 321
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L +S+N+L E L L+RL S+N + + + N+ +L ++
Sbjct: 322 L---NVSNNKLIE-LPALPPRLERL---IASFNHLAEVP---------ELPQNLKQLHVE 365
Query: 181 HNEIENLDGAL----------------MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
+N + L +L + N LR +S++ L
Sbjct: 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDL 421
Query: 225 DISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++ + E + LE+ H+
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 100 bits (251), Expect = 2e-23
Identities = 41/296 (13%), Positives = 96/296 (32%), Gaps = 47/296 (15%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
T L +++ L + + + ++ E G+
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAP-------PGNGEQREMA 61
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
++ L L + ++ ++ + + +L +L N +T + L
Sbjct: 62 VSRLRDCL--DRQAHELELNNLGLSSLP-ELPPHLESLV---ASCNSLTELPELPQSLKS 115
Query: 121 LAYLYLSHNQLTEFL---------------LDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
L + L++ L +++ L+ +D+ N + K
Sbjct: 116 LLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL------- 168
Query: 166 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
++ + +N++E L L + L+ + +N L+ + SL+ +
Sbjct: 169 --PDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIV 221
Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+N+L L E LP L ++ +N L L L L ++ N + +
Sbjct: 222 AGNNILEELPELQN--LPFLTTIYADNNLLKTLPDLPPSLEAL---NVRDNYLTDL 272
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 110 bits (277), Expect = 2e-27
Identities = 58/291 (19%), Positives = 113/291 (38%), Gaps = 25/291 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLG--SLYANN 58
L+ + + + + Q+ L+A ++ +Q G +L +
Sbjct: 31 VLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS 90
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
+ L+ LQ +D + + D Q L++++L N + ++ +S++ L
Sbjct: 91 VPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPASIASL 149
Query: 119 TKLAYLYLSH-NQLTEF--------LLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
+L L + +LTE + +GL L+++ L + I +
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP------ASIA 203
Query: 170 GVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISH 228
+ N+ LK++++ + L A+ + L LDL LR P F G LK L +
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD 262
Query: 229 -NLLTTL-EETSKTFLPALEELFVSHNS-LTRLDKDFHGLPVLCKADLAHN 276
+ L TL + + L LE+L + L+RL LP C + +
Sbjct: 263 CSNLLTLPLDIHR--LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
Score = 106 bits (267), Expect = 4e-26
Identities = 54/261 (20%), Positives = 98/261 (37%), Gaps = 30/261 (11%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L + L Q LS LQ + I+ L LP +Q F+ L +L N +
Sbjct: 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139
Query: 62 TSLDGLLRGLTKLQVFNM-DFNQIT--------MVRRDEFQNLHNLDSISLQNNQITSMN 112
+L + L +L+ ++ ++T E Q L NL S+ L+ I S+
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV- 171
+S++ L L L + ++ L+ L I L +L +DL ++
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGC------------TALRNYP 246
Query: 172 ------TNIFELKLQH-NEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKML 224
+ L L+ + + L + + L +LDL + P L + ++
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306
Query: 225 DISHNLLTTLEETSKTFLPAL 245
+ +L L++ PA
Sbjct: 307 LVPPHLQAQLDQHRPVARPAE 327
Score = 91.9 bits (229), Expect = 6e-21
Identities = 47/277 (16%), Positives = 87/277 (31%), Gaps = 27/277 (9%)
Query: 15 LKSLEGQLGTLSKLQLLVIE-QNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 73
+ S S + L + L + Q Y +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57
Query: 74 LQVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
Q+ + E ++ L++ + L+ L ++ + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN--------EI 184
E L D ++ L T+ L+ N + + + + EL ++ +
Sbjct: 118 E-LPDTMQQFAGLETLTLARNPLRALP------ASIASLNRLRELSIRACPELTELPEPL 170
Query: 185 ENLD--GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL-EETSKTF 241
+ D G G+ L L L +R++ P L +LK L I ++ L+ L
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHH-- 227
Query: 242 LPALEELFVSH-NSLTRLDKDFHGLPVLCKADLAHNN 277
LP LEEL + +L F G L + L +
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264
Score = 78.8 bits (195), Expect = 2e-16
Identities = 36/256 (14%), Positives = 70/256 (27%), Gaps = 47/256 (18%)
Query: 38 LEALPSDIQLFSQLGSLY-ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
+ + S +LY + + +L + + + N +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSN 56
Query: 97 NLDSISLQNNQITSMNSSLSGLT--KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
N + + + L T L L L + D L L+ + +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
+ + + ++ GL L L+ N LR + P
Sbjct: 116 LMEL----------------------PDTMQQF-------AGLETLTLARNPLRAL-PAS 145
Query: 215 FIGLDSLKMLDISH-NLLTTL--------EETSKTFLPALEELFVSHNSLTRLDKDFHGL 265
L+ L+ L I LT L L L+ L + + L L
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 266 PVLCKADLAHNNIKAI 281
L + ++ + A+
Sbjct: 206 QNLKSLKIRNSPLSAL 221
Score = 73.4 bits (181), Expect = 1e-14
Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 4/136 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY-ANNN 59
GL +L L L ++SL + L L+ L I + L AL I +L L
Sbjct: 181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240
Query: 60 RITSLDGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNN-QITSMNSSLSG 117
+ + + G L+ + D + + + + L L+ + L+ ++ + S ++
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 118 LTKLAYLYLSHNQLTE 133
L + + + +
Sbjct: 300 LPANCIILVPPHLQAQ 315
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 113 bits (283), Expect = 3e-27
Identities = 60/357 (16%), Positives = 118/357 (33%), Gaps = 21/357 (5%)
Query: 28 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 87
+ + ++ + F++ +T L + + + I V
Sbjct: 1 MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSV 58
Query: 88 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
Q L N+ + L N++T + L+ L L +L+L N++ + L ++ LK+L++
Sbjct: 59 --QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKS 113
Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
+ L +N I+ N + + + L L +N+I ++ L + L L L N++
Sbjct: 114 LSLEHNGISDI-------NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQI 165
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPV 267
I P GL L+ L +S N ++ L + L L+ L + +K +
Sbjct: 166 SDIVP--LAGLTKLQNLYLSKNHISDLRALAG--LKNLDVLELFSQECL--NKPINHQSN 219
Query: 268 LCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINN 327
L + N ++ + N + N V I + +
Sbjct: 220 LVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 279
Query: 328 NTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQ 384
S + T T AP T Q +
Sbjct: 280 GRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHE 336
Score = 108 bits (270), Expect = 1e-25
Identities = 72/396 (18%), Positives = 141/396 (35%), Gaps = 29/396 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L ++ + NN+ +KS++G + L + L + N+L + + LG L+ + N+
Sbjct: 41 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENK 98
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
I L L+ L KL+ +++ N I+ + + +L L+S+ L NN+IT + + LS LTK
Sbjct: 99 IKDLSS-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTK 154
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L L NQ+++ + + GL +L+ + LS N I+ + G+ N+ L+L
Sbjct: 155 LDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHISDL-------RALAGLKNLDVLELF 205
Query: 181 HNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
E N + + + + L +P+ + ++ +L E S
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPEFTNEVSF 263
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNST 299
F + R+ + + + ++ + G T
Sbjct: 264 IFYQPVTIGKAKARFHGRVTQPLKEVYT-----------VSYDVDGTVIKTKVEAGTRIT 312
Query: 300 LRIYLEGNPVLCDDSMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPT 359
+ E N + G + TT T T
Sbjct: 313 APKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAETTEKTVNLTRYVKY 372
Query: 360 PAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLEL 395
+ + + + T T+ E
Sbjct: 373 IRGNAGIYKLPREDNSLKQGTLASHRCKALTVDREA 408
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 104 bits (262), Expect = 8e-27
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 2/154 (1%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L + + L L L+ +G L + L +L L + + + L +
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T L + L + + ++T + + L + ++T + +++ L +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ L + +LT+ L + L Y ++
Sbjct: 122 SKLQEIYQELTQ-LKAAVGELPDQSKQQQIYQEL 154
Score = 96.0 bits (240), Expect = 9e-24
Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 1/132 (0%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L + + L L L+ +G L + L +L L + + + L +
Sbjct: 26 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 85
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
T L + L + + ++T + + L + ++T + +++ L
Sbjct: 86 TRLKAAVGELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQEIYQELTQLKAAVGELPDQ 144
Query: 122 AYLYLSHNQLTE 133
+ + +LT+
Sbjct: 145 SKQQQIYQELTD 156
Score = 95.6 bits (239), Expect = 1e-23
Identities = 24/165 (14%), Positives = 60/165 (36%), Gaps = 8/165 (4%)
Query: 23 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 82
G L + L +L L + + + L +T L + L + +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 83 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 142
++T + + L + ++T + +++ L + + L + +LTE L + L
Sbjct: 61 ELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTE-LKAAVGEL 118
Query: 143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
+ Y ++ + K V + + + + + E+ +L
Sbjct: 119 PEKSKLQEIYQELTQL------KAAVGELPDQSKQQQIYQELTDL 157
Score = 93.7 bits (234), Expect = 7e-23
Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 11/166 (6%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L + ++T + +++ L + + L + +LT L + L + Y
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR-LKAAVGELPEKSKLQEIYQ 60
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
++ + K V + +L+ + E+ L A+ + S+L + +L +
Sbjct: 61 ELTRL------KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL-KA 113
Query: 214 DFIGLDSLKMLDISHNLLTTL-EETSKTFLPALEELFVSHNSLTRL 258
L L + LT L + LP + + LT L
Sbjct: 114 AVGELPEKSKLQEIYQELTQLKAAVGE--LPDQSKQQQIYQELTDL 157
Score = 76.3 bits (189), Expect = 8e-17
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L + + L L L+ +G L + L +L L + + + L +
Sbjct: 49 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 108
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
T L + L + + ++T ++ L + ++T + ++ L
Sbjct: 109 TELKAAVGELPEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDLKTAFERLG 165
Score = 71.0 bits (175), Expect = 7e-15
Identities = 27/165 (16%), Positives = 47/165 (28%), Gaps = 34/165 (20%)
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L + + L + +LT L + L + Y ++ L
Sbjct: 3 LPEKSKLQEIYQELTR-LKAAVGELPEKSKLQEIYQELT-------------------RL 42
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL-EE 236
K + L S+L + +L + L L + LT L
Sbjct: 43 K---AAVGEL-------PEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTRLKAA 91
Query: 237 TSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+ LP +L + LT L LP K + + +
Sbjct: 92 VGE--LPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQL 134
Score = 53.6 bits (130), Expect = 9e-09
Identities = 11/64 (17%), Positives = 20/64 (31%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + + L L L+ +G L + L +L L + +
Sbjct: 94 ELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQE 153
Query: 61 ITSL 64
+T L
Sbjct: 154 LTDL 157
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 106 bits (266), Expect = 2e-26
Identities = 49/159 (30%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYA 56
LT L L+LN+N+L++L G L L+ L + N+L+ALP + F QL + L
Sbjct: 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGV--FDQLVNLAELRL 116
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
+ N++ SL + LTKL ++ +N++ + + F L +L + L NNQ+ + +
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
LT+L L L +NQL L++L+ + L N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 101 bits (253), Expect = 1e-24
Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
D L L +N+L SL L+KL+LL + N+L+ LP+ I +L L +L+ +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL-KNLETLWVTDN 95
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SG 117
++ +L G+ L L +D NQ+ + F +L L +SL N++ S+ +
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
LT L L L +NQL L L+T+ L N++
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Score = 99.7 bits (249), Expect = 5e-24
Identities = 52/202 (25%), Positives = 99/202 (49%), Gaps = 20/202 (9%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+L A+PS+I + L +N+++SL LTKL++ ++ N++ + F+
Sbjct: 26 KKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83
Query: 95 LHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L NL+++ + +N++ ++ + L LA L L NQL L +L + L YN
Sbjct: 84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 154 KI-----NKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
++ F +T++ EL+L +N+++ + +GA + L L L +N+L
Sbjct: 144 ELQSLPKGVF----------DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 208 RTISPDDFIGLDSLKMLDISHN 229
+ + F L+ LKML + N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215
Score = 86.2 bits (214), Expect = 3e-19
Identities = 52/219 (23%), Positives = 89/219 (40%), Gaps = 39/219 (17%)
Query: 97 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ + LQ+N+++S+ + + LTKL LYL+ N+L + LK L T+ ++ NK+
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
G + L+ L L N+L+++ P F
Sbjct: 98 QALPI----------------------------GVFDQLVNLAELRLDRNQLKSLPPRVF 129
Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLA 274
L L L + +N L +L + L +L+EL + +N L R+ + F L L L
Sbjct: 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 275 HNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNPVLCD 312
+N +K + F L + L+ NP C
Sbjct: 190 NNQLKRV--------PEGAFDSLEKLKMLQLQENPWDCT 220
Score = 66.2 bits (162), Expect = 2e-12
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
+ +L LQ N++ +L A + L L L+ NKL+T+ F L +L+ L ++ N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
L L L L EL + N L L F L L L +N ++++
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 103 bits (260), Expect = 6e-26
Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 17/229 (7%)
Query: 49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL-QNNQ 107
Q I + L L + + + F NL N+ I + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 108 ITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGK 165
+ + S S L+K+ ++ + + + ++ D + L L+ + + + F
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF----PDL 123
Query: 166 NQVQGVTNIFELKLQHN-EIENL-DGALMGIHGLSR-LDLSHNKLRTISPDDFIGLDSLK 222
+V F L++ N + ++ A G+ + L L +N ++ F G L
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLD 182
Query: 223 MLDISHN-LLTTLEETSKTFLP-ALEELFVSHNSLTRLDKD-FHGLPVL 268
+ ++ N LT +++ + + L VS S+T L L L
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231
Score = 86.6 bits (215), Expect = 1e-19
Identities = 38/219 (17%), Positives = 77/219 (35%), Gaps = 28/219 (12%)
Query: 28 LQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNNRITSLD-GLLRGLTKLQVFNMDFN 82
Q L + + L +PS FS L ++ + + + L+ L+K+ +
Sbjct: 33 TQTLKLIETHLRTIPSHA--FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 83 Q-ITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHN-QLTEFLLDD 138
+ +T + D + L L + + N + + + L ++ N +T ++
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 139 IRGL-KRLRTVDLSYNKINKFGTRNEGKNQVQGV---TNIFELKLQHN-EIENLD-GALM 192
+GL T+ L N T + + L N + +D A
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQ---------GYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201
Query: 193 GIH-GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
G++ G S LD+S + + L L + + L
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN-TWTL 239
Score = 75.8 bits (187), Expect = 7e-16
Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 9/159 (5%)
Query: 1 GLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLY- 55
L+ + + + N L ++ L L L+ L I L+ P +++S L
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 56 ANNNRITSL-DGLLRGLTK-LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-N 112
+N +TS+ +GL + N T V+ F +N +T +
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
Query: 113 SSLSGL-TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
+ G+ + + L +S +T + LK L +
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236
Score = 72.3 bits (178), Expect = 1e-14
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 10/165 (6%)
Query: 1 GLTDLNWLFLN-NNRLKSLE-GQLGTLSKLQLLVIEQNQ-LEALPSDI-QLFSQLGSLYA 56
L +++ ++++ + L+ LE LSK+ + I + L + D + L L
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 57 NNNRITSLDGL--LRGLTKLQVFNM-DFNQITMVRRDEFQNLHN-LDSISLQNNQITSMN 112
N + L + + + D +T + + FQ L N ++ L NN TS+
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKR-LRTVDLSYNKI 155
TKL +YL+ N+ + D G+ +D+S +
Sbjct: 173 GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217
Score = 65.0 bits (159), Expect = 3e-12
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL-LTTLEETSKTFLPALEELFVSHN- 253
L L LRTI F L ++ + +S ++ L LE S L + + + +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 254 SLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVL 310
+LT +D D LP+L + + +K + + + + + NP +
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV------YSTDIFFILEITDNPYM 143
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 102 bits (255), Expect = 1e-23
Identities = 48/262 (18%), Positives = 97/262 (37%), Gaps = 31/262 (11%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
N N SL + +++ L + + L +LP ++ Q+ L N +
Sbjct: 36 WEKQALPGENRNEAVSL-LKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL 92
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
SL L L L + N+++ + + +L +LD + NNQ+T + + L
Sbjct: 93 ISLPELPASLEYL---DACDNRLSTL-PELPASLKHLD---VDNNQLTMLPELPALLEY- 144
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
+ +NQLT L + L+ L + N++ + ++ L +
Sbjct: 145 --INADNNQLTM-LPELPTSLEVL---SVRNNQLTFL---------PELPESLEALDVST 189
Query: 182 NEIENLDGALMGIHGLSR----LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
N +E+L + H N++ I P++ + LD + + N L++
Sbjct: 190 NLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRE 248
Query: 238 SKTFLPALEELFVSHNSLTRLD 259
S + A + + D
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSD 270
Score = 92.0 bits (228), Expect = 3e-20
Identities = 39/252 (15%), Positives = 85/252 (33%), Gaps = 32/252 (12%)
Query: 36 NQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRG--LTKLQVFNMDFNQITMVRRDEF 92
N + +D + + LL+ + + ++ ++ + +
Sbjct: 20 NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP 79
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
+ L+ + N + S+ + L YL N+L+ L + LK L D+
Sbjct: 80 PQITVLE---ITQNALISLPELPASLE---YLDACDNRLST-LPELPASLKHL---DVDN 129
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISP 212
N++ + + + +N++ L L L + +N+L +
Sbjct: 130 NQLTMLP---------ELPALLEYINADNNQLTMLPEL---PTSLEVLSVRNNQLTFLPE 177
Query: 213 DDFIGLDSLKMLDISHNLLTTLEET---SKTFLPALEELFVSHNSLTRLDKDFHGLPVLC 269
+SL+ LD+S NLL +L + N +T + ++ L C
Sbjct: 178 ----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTC 233
Query: 270 KADLAHNNIKAI 281
L N + +
Sbjct: 234 TIILEDNPLSSR 245
Score = 89.3 bits (221), Expect = 2e-19
Identities = 49/264 (18%), Positives = 90/264 (34%), Gaps = 44/264 (16%)
Query: 53 SLYANNNRITS----LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
S + N I+ K + + N+ + ++ + L +
Sbjct: 14 SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV--SLLKECLINQFSELQLNRLNL 71
Query: 109 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQV 168
+S+ +L ++ L ++ N L L + L+ L D N+++
Sbjct: 72 SSLPDNL--PPQITVLEITQNALIS-LPELPASLEYL---DACDNRLSTLP--------- 116
Query: 169 QGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
+ ++ L + +N++ L L ++ +N+L + SL++L + +
Sbjct: 117 ELPASLKHLDVDNNQLTMLPEL---PALLEYINADNNQLTMLPEL----PTSLEVLSVRN 169
Query: 229 NLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKA----DLAHNNIKAINIQ 284
N LT L E +LE L VS N L L + N I I
Sbjct: 170 NQLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225
Query: 285 LALKTQCQIFGLNSTLRIYLEGNP 308
I L+ T I LE NP
Sbjct: 226 --------ILSLDPTCTIILEDNP 241
Score = 61.1 bits (148), Expect = 3e-10
Identities = 24/145 (16%), Positives = 41/145 (28%), Gaps = 8/145 (5%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI----QLFSQLGSLYAN 57
T L L + NN+L L +L L + N LE+LP+
Sbjct: 159 PTSLEVLSVRNNQLTFLPELPESLEALDV---STNLLESLPAVPVRNHHSEETEIFFRCR 215
Query: 58 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
NRIT + + L ++ N ++ R+ + M+
Sbjct: 216 ENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS-MSDGQQN 274
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGL 142
E D+ +
Sbjct: 275 TLHRPLADAVTAWFPENKQSDVSQI 299
Score = 44.6 bits (105), Expect = 4e-05
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 1/145 (0%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+ NR+ + + +L +++E N L + + Y
Sbjct: 206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIY 265
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
S+ + + + ++ + + + N ++ LS
Sbjct: 266 FSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSA 325
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLR 146
Q+ L+ + LR
Sbjct: 326 RNTSGFREQVAA-WLEKLSASAELR 349
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 100 bits (250), Expect = 1e-23
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 3 TDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS---LYAN 57
+ L L++N L L E L+ L L++ N L + S+ F + + L +
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEA--FVPVPNLRYLDLS 96
Query: 58 NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MN 112
+N + +L + L L L+V + N I +V R+ F+++ L + L NQI+ +
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
+ L KL L LS N+L + L D++ L L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 98.0 bits (244), Expect = 7e-23
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 11/160 (6%)
Query: 74 LQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQL 131
+ ++ N ++ +R + L NL S+ L +N + ++S + + L YL LS N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGA 190
L+ L + L N I +N + + + +L L N+I
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVV-----DRNAFEDMAQLQKLYLSQNQISRFPVEL 155
Query: 191 LMGIHGLSRL---DLSHNKLRTISPDDFIGLDSLKMLDIS 227
+ + L +L DLS NKL+ + D L + +
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Score = 94.1 bits (234), Expect = 2e-21
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 14/177 (7%)
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLD-GALMGIHGLSRLDLS 203
+DLS+N + +R + +TN+ L L HN + + A + + L LDLS
Sbjct: 41 TALLDLSHNNL----SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 204 HNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-- 261
N L T+ F L +L++L + +N + ++ + + L++L++S N ++R +
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 262 --FHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMR 316
+ LP L DL+ N +K + + Q +YL NP+ CD +
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDL-----QKLPAWVKNGLYLHNNPLECDCKLY 208
Score = 71.0 bits (174), Expect = 9e-14
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YA 56
+ +L +L L++N L +L E L L++L++ N + + + F + L Y
Sbjct: 86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA--FEDMAQLQKLYL 143
Query: 57 NNNRITSLD----GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL--DSISLQNNQIT 109
+ N+I+ L KL + ++ N++ + + Q L + + L NN +
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 43.7 bits (103), Expect = 6e-05
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 1 GLTDLNWLFLNNNRLKSLE----GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGS--- 53
+ L L+L+ N++ L KL LL + N+L+ LP +L +
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD--LQKLPAWVK 191
Query: 54 --LYANNNRITSLDGLLRGLTKLQVFNMDF-----NQITMVRRDEFQNLHNLDSISLQNN 106
LY +NN + L + + Q + + + + N+ +LD +
Sbjct: 192 NGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEY 251
Query: 107 QITSMNSSL 115
+ ++ + L
Sbjct: 252 KESAWEAHL 260
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 97.0 bits (242), Expect = 1e-23
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
+ + L N +K + G KL+ + + NQ+ L D L L SL N
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-RSLNSLVLYGN 90
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
+IT L L GL LQ+ ++ N+I +R D FQ+LHNL+ +SL +N++ ++ + S
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 118 LTKLAYLYLSHN 129
L + ++L+ N
Sbjct: 151 LRAIQTMHLAQN 162
Score = 77.8 bits (192), Expect = 1e-16
Identities = 39/157 (24%), Positives = 60/157 (38%), Gaps = 31/157 (19%)
Query: 75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE 133
++ N I ++ F L I L NNQI+ + + GL L L L N++TE
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALM 192
GL L+ L L N+I L A
Sbjct: 95 LPKSLFEGLFSLQ-----------------------------LLLLNANKINCLRVDAFQ 125
Query: 193 GIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+H L+ L L NKL+TI+ F L +++ + ++ N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 72.4 bits (178), Expect = 6e-15
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 29/158 (18%)
Query: 97 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
+ I L+ N I + + S KL + LS+NQ++E D +GL+ L ++ L NKI
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92
Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
+ G+ L L L+ NK+ + D F
Sbjct: 93 TELP----------------------------KSLFEGLFSLQLLLLNANKINCLRVDAF 124
Query: 216 IGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
L +L +L + N L T+ + + + L A++ + ++ N
Sbjct: 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 66.2 bits (162), Expect = 1e-12
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 18/132 (13%)
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
+ L N ++ I P F L+ +D+S+N ++ L + L +L L + N +T L
Sbjct: 36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 259 DKD-FHGLPVLCKADLAHNNIKAI-----------------NIQLALKTQCQIFGLNSTL 300
K F GL L L N I + + +L + L +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155
Query: 301 RIYLEGNPVLCD 312
++L NP +CD
Sbjct: 156 TMHLAQNPFICD 167
Score = 61.2 bits (149), Expect = 5e-11
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 23/107 (21%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
GL LN L L N++ L + L LQLL++ N++ L
Sbjct: 78 GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR----------------- 120
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ L L + ++ N++ + + F L + ++ L N
Sbjct: 121 -----VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 102 bits (256), Expect = 1e-23
Identities = 66/304 (21%), Positives = 117/304 (38%), Gaps = 33/304 (10%)
Query: 2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 59
L L+L NN + L S+L L + N L +PS + S+L L N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452
Query: 60 RIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSG 117
+ + L + L+ +DFN +T N NL+ ISL NN++T + +
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN-----KFG--TRNEGKNQVQG 170
L LA L LS+N + + ++ + L +DL+ N N + N + G
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 171 VTNIFELKLQHNEIENLDGALMGIHG-----------LSRLDLSHNKLRTISPDDFIGLD 219
++ + + G L+ G + +++ + F
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 220 SLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADL 273
S+ LD+S+N+L+ + +P L L + HN ++ + + L L DL
Sbjct: 633 SMMFLDMSYNMLSGYIPKEI-----GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 274 AHNN 277
+ N
Sbjct: 688 SSNK 691
Score = 101 bits (255), Expect = 2e-23
Identities = 59/271 (21%), Positives = 107/271 (39%), Gaps = 29/271 (10%)
Query: 2 LTDLNWLFLNNNRLK---SLEGQLGTLSKLQLLVIEQNQLE---ALPSDIQLFSQLGSLY 55
L L L+ N L + LG+ S L+ L + N L+ + ++L + L L
Sbjct: 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLD 157
Query: 56 ANNNRIT----SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
+ N I+ L G +L+ + N+I+ + NL+ + + +N ++
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKIS--GDVDVSRCVNLEFLDVSSNNFSTG 215
Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
L + L +L +S N+L+ I L+ +++S N+ G +
Sbjct: 216 IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV-------GPIPPLPL 268
Query: 172 TNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
++ L L N+ + L GA L+ LDLS N P F L+ L +
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGAC---DTLTGLDLSGNHFYGAVPPFFGSCSLLESLAL 325
Query: 227 SHNLLT-TLEETSKTFLPALEELFVSHNSLT 256
S N + L + + L+ L +S N +
Sbjct: 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Score = 93.4 bits (233), Expect = 1e-20
Identities = 55/266 (20%), Positives = 94/266 (35%), Gaps = 48/266 (18%)
Query: 2 LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 59
T+LNW+ L+NNRL + +G L L +L + N +P+++ L L N N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 60 RITSLDGLL-RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT---SMNSSL 115
G + + K + N I R +N N + + L
Sbjct: 549 LFN---GTIPAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
+ L+ ++ + +D+SYN
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN---------------------- 642
Query: 176 ELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNL 230
L G + + L L+L HN + +I PD+ L L +LD+S N
Sbjct: 643 ----------MLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNK 691
Query: 231 LTTLEETSKTFLPALEELFVSHNSLT 256
L + + L L E+ +S+N+L+
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 90.7 bits (226), Expect = 9e-20
Identities = 57/273 (20%), Positives = 102/273 (37%), Gaps = 33/273 (12%)
Query: 2 LTDLNWLFLNNNRLKSLEGQL--GTLSKLQLLVIEQNQLE-ALPSDIQ-LFSQLGSLYAN 57
T+L L +++N G + L LQ L + +N+ +P + L L +
Sbjct: 246 CTELKLLNISSN---QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302
Query: 58 NNRIT-SLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQIT-SMNSS 114
N ++ + L+ + N + + D + L + L N+ + + S
Sbjct: 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 115 LSGLT-KLAYLYLSHNQLTEFLLDDI--RGLKRLRTVDLSYNKINKFGTRNEGK--NQVQ 169
L+ L+ L L LS N + +L ++ L+ + L N GK +
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT-------GKIPPTLS 415
Query: 170 GVTNIFELKLQHNEIENLDGA----LMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
+ + L L N L G L + L L L N L P + + + +L+ L
Sbjct: 416 NCSELVSLHLSFN---YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 226 ISHNLLT-TL-EETSKTFLPALEELFVSHNSLT 256
+ N LT + S L + +S+N LT
Sbjct: 473 LDFNDLTGEIPSGLSN--CTNLNWISLSNNRLT 503
Score = 88.8 bits (221), Expect = 4e-19
Identities = 55/288 (19%), Positives = 111/288 (38%), Gaps = 29/288 (10%)
Query: 8 LFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT- 62
+ L++ L L +L+ L+ L + + + S + + L SL + N ++
Sbjct: 55 IDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114
Query: 63 --SLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMNSS----L 115
+ L + L+ N+ N + + L++L+ + L N I+ N
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK-NQVQGVTNI 174
G +L +L +S N+++ + D+ L +D+S N + + + +
Sbjct: 175 DGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS-------TGIPFLGDCSAL 225
Query: 175 FELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT 232
L + N++ + A+ L L++S N+ I P L SL+ L ++ N T
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFT 282
Query: 233 -TLEETSKTFLPALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNI 278
+ + L L +S N + F +L L+ NN
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Score = 77.3 bits (191), Expect = 2e-15
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 18/217 (8%)
Query: 71 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ 130
+T + + + N +L L+S+ L N+ I S L L LS N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111
Query: 131 LTEFL--LDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN----EI 184
L+ + L + L+ +++S N ++ G + G + ++ L L N
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK----LNSLEVLDLSANSISGAN 167
Query: 185 ENLDGALMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLT-TLEETSKTFL 242
G L L +S NK+ + +L+ LD+S N + +
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGD--C 222
Query: 243 PALEELFVSHNSLT-RLDKDFHGLPVLCKADLAHNNI 278
AL+ L +S N L+ + L +++ N
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Score = 47.2 bits (113), Expect = 8e-06
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 1 GLTDLNWLFLNNNRLK---SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYA 56
N L+ QL LS I + L
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639
Query: 57 NNNRIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSS 114
+ N ++ + + + L + N+ N I+ DE +L L+ + L +N++ + +
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699
Query: 115 LSGLTKLAYLYLSHNQLT 132
+S LT L + LS+N L+
Sbjct: 700 MSALTMLTEIDLSNNNLS 717
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 97.0 bits (242), Expect = 3e-23
Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 25/245 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
GL + L + L LS +Q + + +++L + +Q F+ L L+ ++N+
Sbjct: 17 GLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQ 74
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
I+ L L + LTKL+ +++ N++ + L + L NN++ SL L
Sbjct: 75 ISDLSPL-KDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDT-DSLIHLKN 129
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ 180
L L + +N+L + + L +L +DL N+I + + + + L
Sbjct: 130 LEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT-------GGLTRLKKVNWIDLT 180
Query: 181 HNEIENLDGALMGIHGLSRLDLSHN----KLRTISPDDFIGLDSLKMLDISHNLLTTLEE 236
+ N + L +++ R ISP S + L +E
Sbjct: 181 GQKCVNEP-----VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDE 235
Query: 237 TSKTF 241
S F
Sbjct: 236 VSYKF 240
Score = 93.9 bits (234), Expect = 4e-22
Identities = 43/212 (20%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 31 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 90
+ + + D L + +T L + L+ +Q FN D + I +
Sbjct: 2 SIQRPTPINQVFPDPGL-ANAVKQNLGKQSVTDLVSQ-KELSGVQNFNGDNSNIQSL--A 57
Query: 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
Q NL + L +NQI+ + S L LTKL L ++ N+L L+ I L + L
Sbjct: 58 GMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKN--LNGIPSAC-LSRLFL 113
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
N++ + + + N+ L +++N+++++ L + L LDL N++
Sbjct: 114 DNNELRDTDS-------LIHLKNLEILSIRNNKLKSIVM-LGFLSKLEVLDLHGNEITNT 165
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
L + +D++ + L
Sbjct: 166 GG--LTRLKKVNWIDLTGQKCVNEPVKYQPEL 195
Score = 89.7 bits (223), Expect = 1e-20
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 19/202 (9%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 141
I V D L N +L +T + S L+ + ++ + L ++
Sbjct: 7 TPINQVFPDP--GLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQS--LAGMQF 61
Query: 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLD 201
L+ + LS+N+I+ + ++ +T + EL + N ++NL+G + LSRL
Sbjct: 62 FTNLKELHLSHNQISDL-------SPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLF 112
Query: 202 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD 261
L +N+LR I L +L++L I +N L ++ L LE L + N +T
Sbjct: 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEITNTG-G 167
Query: 262 FHGLPVLCKADLAHNNIKAINI 283
L + DL +
Sbjct: 168 LTRLKKVNWIDLTGQKCVNEPV 189
Score = 83.5 bits (207), Expect = 2e-18
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 17/179 (9%)
Query: 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
+ I + GL L +T+ L + L ++ + + I
Sbjct: 4 QRPTPINQV-FPDPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQSL---- 56
Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
+Q TN+ EL L HN+I +L L + L L ++ N+L+ ++ I L
Sbjct: 57 ---AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG---IPSACLS 109
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
L + +N L + L LE L + +N L + L L DL N I
Sbjct: 110 RLFLDNNELRDTDSLIH--LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT 165
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 95.7 bits (238), Expect = 1e-21
Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 13/227 (5%)
Query: 9 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DG 66
+ + +L L + + + S I ++FS + + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN---SSLSGLTKLAY 123
++ + N +T + +L L+++ LQ NQ+ ++ + + L
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 124 LYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
L +S N ++ K L ++++S N + R I L L N
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-------CLPPRIKVLDLHSN 431
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+I+++ ++ + L L+++ N+L+++ F L SL+ + + N
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 88.8 bits (220), Expect = 3e-19
Identities = 38/324 (11%), Positives = 91/324 (28%), Gaps = 46/324 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
L+ L L +++NR++ L+ +L+ L + N+L + L L + N
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN 100
Query: 60 RITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
+L +++L+ + + +L+ + +
Sbjct: 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG- 159
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L T I + +L + I N+ + + +
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 178 K----------------------------LQHNEIENL-----------DGALMGIHGLS 198
+ + I N+ D + + LS
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
+ + + ++ + + + + + + + L S+N LT
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339
Query: 259 -DKDFHGLPVLCKADLAHNNIKAI 281
++ L L L N +K +
Sbjct: 340 VFENCGHLTELETLILQMNQLKEL 363
Score = 83.8 bits (207), Expect = 1e-17
Identities = 49/319 (15%), Positives = 105/319 (32%), Gaps = 44/319 (13%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L D + + K + L + N + + + + +N ++
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH-TTVWYFSISNVKL 259
Query: 62 TS------LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSS 114
D L L + + + + ++ N++ + +
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
S ++ +L S+N LT+ + ++ L L T+ L N++ +
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE----------------- 362
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLTT 233
+ + + L +LD+S N + SL L++S N+LT
Sbjct: 363 ---------LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 234 LEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI 293
+ P ++ L + N + + K L L + ++A N +K++
Sbjct: 414 T--IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP-------DGIF 464
Query: 294 FGLNSTLRIYLEGNPVLCD 312
L S +I+L NP C
Sbjct: 465 DRLTSLQKIWLHTNPWDCS 483
Score = 79.1 bits (195), Expect = 4e-16
Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 21/302 (6%)
Query: 1 GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
+L L L+ N +L + G +S+L+ L + LE + +
Sbjct: 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL 147
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI---------- 108
GL ++ T ++ +L+ + I
Sbjct: 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS 207
Query: 109 --TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL---KRLRTVDLSYNKINKFGTRNE 163
S+ + L KL+ L L++ + T I L + +S K+ +
Sbjct: 208 YFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRD 267
Query: 164 GKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
+ + ++ + ++ + + + R + +
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD---FHGLPVLCKADLAHNNIK 279
LD S+NLLT + L LE L + N L L K + L + D++ N++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 280 AI 281
Sbjct: 388 YD 389
Score = 78.0 bits (192), Expect = 1e-15
Identities = 35/220 (15%), Positives = 79/220 (35%), Gaps = 7/220 (3%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
N L +P D+ + L + N I+ L + L+KL++ + N+I + F+
Sbjct: 10 NGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 153
L+ + L +N++ + S L +L LS N + + + +L+ + LS
Sbjct: 68 NQELEYLDLSHNKLVKI--SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
+ K + + + + + + L + ++ + I
Sbjct: 126 HLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
+ +L++ +I L + L L+ N
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN 224
Score = 64.5 bits (157), Expect = 2e-11
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 1 GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
+ L L ++ N + +G L L + N L L ++ L ++
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHS 430
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
N+I S+ + L LQ N+ NQ+ V F L +L I L N
Sbjct: 431 NKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 63.3 bits (154), Expect = 5e-11
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
L++S N + + D + L L++L ISHN + L+ + F LE L +SHN L ++
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 259 DKDFHGLPVLCKADLAHNNIKAI 281
H L DL+ N A+
Sbjct: 85 --SCHPTVNLKHLDLSFNAFDAL 105
Score = 59.5 bits (144), Expect = 8e-10
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
L + N I L ++ + L L +SHN+++ + F L+ LD+SHN
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQ 284
L + S L+ L +S N+ L K+F + L L+ +++ ++
Sbjct: 81 LVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVL 133
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 90.1 bits (224), Expect = 4e-21
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 3 TDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANN 58
L LNNN LE G L +L+ + N++ + S + + +
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA-SGVNEILLTS 90
Query: 59 NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
NR+ ++ + +GL L+ + N+IT V D F L ++ +SL +NQIT++ +
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 117 GLTKLAYLYLSHNQL 131
L L+ L L N
Sbjct: 151 TLHSLSTLNLLANPF 165
Score = 75.8 bits (187), Expect = 4e-16
Identities = 34/158 (21%), Positives = 65/158 (41%), Gaps = 32/158 (20%)
Query: 75 QVFNMDFNQITMVR-RDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 132
++ N+ T++ F+ L L I+ NN+IT + + G + + + L+ N+L
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 133 EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGAL 191
+GL+ L+T L L+ N I + + +
Sbjct: 95 NVQHKMFKGLESLKT-----------------------------LMLRSNRITCVGNDSF 125
Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+G+ + L L N++ T++P F L SL L++ N
Sbjct: 126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 73.5 bits (181), Expect = 3e-15
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSH 204
+ L+ N+ T E + + + ++ +N+I ++ +GA G G++ + L+
Sbjct: 35 AELRLNNNEF----TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90
Query: 205 NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FH 263
N+L + F GL+SLK L + N +T + S L ++ L + N +T + F
Sbjct: 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150
Query: 264 GLPVLCKADLAHN 276
L L +L N
Sbjct: 151 TLHSLSTLNLLAN 163
Score = 63.9 bits (156), Expect = 6e-12
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
G + +N + L +NRL+++ L L+ L++ N++ +
Sbjct: 79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG----------------- 121
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ GL+ +++ ++ NQIT V F LH+L +++L N
Sbjct: 122 -----NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 59.3 bits (144), Expect = 2e-10
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 199 RLDLSHNKLRTISPDD-FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTR 257
L L++N+ + F L L+ ++ S+N +T +EE + + E+ ++ N L
Sbjct: 36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 258 LD-KDFHGLPVLCKADLAHNNIKAI 281
+ K F GL L L N I +
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCV 120
Score = 35.4 bits (82), Expect = 0.018
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 38
GL+ + L L +N++ ++ G TL L L + N
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 29.6 bits (67), Expect = 1.5
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 246 EELFVSHNSLTRLDKD--FHGLPVLCKADLAHNNIKAI 281
EL +++N T L+ F LP L K + ++N I I
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 89.6 bits (223), Expect = 4e-21
Identities = 26/189 (13%), Positives = 69/189 (36%), Gaps = 14/189 (7%)
Query: 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
F + + ++ + L + +T + + HN+ +++ N
Sbjct: 22 FKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIH 77
Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
T+ + +SGL+ L L + +T + ++ GL L +D+S++ + + +
Sbjct: 78 ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-----DSILTK 131
Query: 168 VQGVTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
+ + + + L +N I ++ L + L L++ + + L L
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYA 188
Query: 227 SHNLLTTLE 235
+ +
Sbjct: 189 FSQTIGGKK 197
Score = 88.5 bits (220), Expect = 9e-21
Identities = 30/156 (19%), Positives = 54/156 (34%), Gaps = 5/156 (3%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+ L ++ L N + L G + ++ L I + I S L L +
Sbjct: 43 MNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDV 100
Query: 62 TSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
TS L GLT L + ++ + + L ++SI L N + L L +
Sbjct: 101 TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
L L + + + + I +L + I
Sbjct: 161 LKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194
Score = 65.0 bits (159), Expect = 2e-12
Identities = 28/188 (14%), Positives = 61/188 (32%), Gaps = 34/188 (18%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
+ L + ++ + + + L Y+ L++ +T+ L I ++ + ++
Sbjct: 21 TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
+ G + L RL + + +
Sbjct: 77 HATN--------------------------YNPISG----LSNLERLRIMGKDVTSDKIP 106
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
+ GL SL +LDISH+ T LP + + +S+N LP L ++
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNI 166
Query: 274 AHNNIKAI 281
+ +
Sbjct: 167 QFDGVHDY 174
Score = 58.8 bits (143), Expect = 2e-10
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLY-AN 57
GL++L L + + S + L L+ L LL I + + ++ + I ++ S+ +
Sbjct: 86 GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145
Query: 58 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 110
N IT + L + L +L+ N+ F+ + R ++ L+ + + I
Sbjct: 146 NGAITDIMPL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195
Score = 36.1 bits (84), Expect = 0.010
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 1 GLTDLNWLFLN-NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
L +N + L+ N + + L TL +L+ L I+ + + I+ F +L LYA +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQ 191
Query: 60 RITSL 64
I
Sbjct: 192 TIGGK 196
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 85.1 bits (211), Expect = 4e-19
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 60
D L L + L +L L+KL L ++ NQL+ L + + ++LG+L NN+
Sbjct: 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 118
+ SL G+ LT+L + NQ+ + F L L + L NQ+ S+ + L
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
T L L LS NQL L +L+T+ L N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 84.4 bits (209), Expect = 9e-19
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 4/134 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
GLT L WL L+ N+L++L G L++L L + NQL +LP + +QL LY
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG 116
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
N++ SL G+ LTKL+ ++ NQ+ + F L NL ++SL NQ+ S+ + +
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 117 GLTKLAYLYLSHNQ 130
L KL + L NQ
Sbjct: 177 RLGKLQTITLFGNQ 190
Score = 68.6 bits (168), Expect = 3e-13
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
L+++PS I ++ L + + +L D RGLTKL N+D+NQ+ + F +L
Sbjct: 26 LDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 97 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 155
L ++ L NNQ+ S+ + LT+L LYL NQL L +L+ + L+
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT--- 140
Query: 156 NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDF 215
NQ+Q + GA + L L LS N+L+++ F
Sbjct: 141 ----------NQLQSIP---------------AGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 216 IGLDSLKMLDISHN 229
L L+ + + N
Sbjct: 176 DRLGKLQTITLFGN 189
Score = 50.8 bits (122), Expect = 2e-07
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 19/156 (12%)
Query: 176 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
+L LQ + L D G+ L+ L+L +N+L+T+S F L L L +++N L +L
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 235 EETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAI------------ 281
L L++L++ N L L F L L + L N +++I
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 282 -----NIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
QL L I L GN C
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 84.5 bits (210), Expect = 2e-18
Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 50/244 (20%)
Query: 2 LTDLNWLFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYA 56
L LN+L++ +L G + L++L L I + A+P + L +L
Sbjct: 75 LPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSL 115
+ N ++ + +L NL I+ N+I+ ++ S
Sbjct: 133 SYNALSG-------------------TLP----PSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 116 SGLTKLA-YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK--NQVQGVT 172
+KL + +S N+LT + L L VDLS N + EG
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML-------EGDASVLFGSDK 221
Query: 173 NIFELKLQHNEIENLDGA---LMGIHGLSRLDLSHNKLR-TISPDDFIGLDSLKMLDISH 228
N ++ L N +L + L+ LDL +N++ T+ P L L L++S
Sbjct: 222 NTQKIHLAKN---SLAFDLGKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSF 277
Query: 229 NLLT 232
N L
Sbjct: 278 NNLC 281
Score = 71.4 bits (176), Expect = 5e-14
Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 28/225 (12%)
Query: 68 LRGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQN-NQIT-SMNSSLSGLTKLAY 123
++ ++ + NL L+ + + N + + +++ LT+L Y
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK--NQVQGVTNIFELKLQH 181
LY++H ++ + D + +K L T+D SYN ++ G + + N+ +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-------GTLPPSISSLPNLVGITFDG 158
Query: 182 NEIENLDGA----LMGIHGLSR-LDLSHNKLR-TISPDDFIGLDSLKMLDISHNLLTTLE 235
N + GA L + +S N+L I P +L +D+S N+L
Sbjct: 159 N---RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT--FANLNLAFVDLSRNMLE--G 211
Query: 236 ETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNI 278
+ S F +++ ++ NSL L DL +N I
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 86.5 bits (214), Expect = 2e-18
Identities = 47/321 (14%), Positives = 97/321 (30%), Gaps = 42/321 (13%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
L++L L L++NR++SL L+ L + N+L+ + + L L + N
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFN 131
Query: 60 RITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH-NLDSISLQNNQITSMNSSLS 116
L LTKL + + + +LH + + L + I +
Sbjct: 132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG----------------- 159
+ L+L + + F + + L + LS K+N
Sbjct: 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251
Query: 160 ---TRNEGKNQVQGVTNIFEL----KLQHNEIENL-----------DGALMGIHGLSRLD 201
T + + +F+ +++ I NL + + L
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311
Query: 202 LSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD-K 260
+ + + + + +S + + + L + N T +
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371
Query: 261 DFHGLPVLCKADLAHNNIKAI 281
L L L N +K
Sbjct: 372 GCSTLKRLQTLILQRNGLKNF 392
Score = 85.7 bits (212), Expect = 3e-18
Identities = 34/227 (14%), Positives = 75/227 (33%), Gaps = 13/227 (5%)
Query: 9 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSL-DG 66
+ L L + ++ + +F+++ + + +
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS---SLSGLTKLAY 123
+ N N T L L ++ LQ N + + ++ L
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLET 407
Query: 124 LYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
L +S N L D + + ++LS N + R + L L +N
Sbjct: 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-------CLPPKVKVLDLHNN 460
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
I ++ + + L L+++ N+L+++ F L SL+ + + N
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 82.2 bits (203), Expect = 4e-17
Identities = 37/297 (12%), Positives = 89/297 (29%), Gaps = 16/297 (5%)
Query: 2 LTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
+ L L L+ N L + G L+KL L + + L L + +
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179
Query: 60 RITSLDGLLRGLTKLQVF--NMDFNQITMVRRDEFQNLHNLDSISLQNNQI------TSM 111
G L ++ F+ ++ +++ L + L N ++ M
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239
Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-----RLRTVDLSYNKINKFGTRNEGKN 166
L ++ + ++ + + +++ I + R E
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299
Query: 167 QVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLD 225
+ ++ +++ + ++ LS + I S L+
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359
Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
+ N+ T + L L+ L + N L K + + ++ ++N
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Score = 79.1 bits (195), Expect = 4e-16
Identities = 45/282 (15%), Positives = 98/282 (34%), Gaps = 16/282 (5%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L +P D+ + +L + N I+ L + L++L+V + N+I + F
Sbjct: 41 RNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 153
+L+ + + +N++ ++ S + L +L LS N + + L +L + LS
Sbjct: 99 NQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
K + + + L L I+ + + I + L L + S
Sbjct: 157 KF----RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212
Query: 214 DFIGLDSLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPV 267
+ +++L L +S+ L L L V+ + K
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272
Query: 268 LCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPV 309
+ + NI + I + + + + + +E
Sbjct: 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314
Score = 78.0 bits (192), Expect = 1e-15
Identities = 54/330 (16%), Positives = 117/330 (35%), Gaps = 35/330 (10%)
Query: 3 TDLNWLFLNNNRLKSLEGQLG-------TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY 55
T + L + N L S++ + LS ++L +L S++ L ++
Sbjct: 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255
Query: 56 ANNNRITSLDGL-------LRGLTKLQVFNMDFNQITMVRRDEFQN--LHNLDSISLQNN 106
+ T + R + L ++N+ + + L +L ++N
Sbjct: 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315
Query: 107 QITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 165
+L S ++ LS + + ++ + N +
Sbjct: 316 VFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQG--- 372
Query: 166 NQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL----DSL 221
+ + L LQ N ++N + +S L+ L +++ + +S+
Sbjct: 373 --CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
+L++S N+LT + P ++ L + +N + + KD L L + ++A N +K++
Sbjct: 431 LVLNLSSNMLTGS--VFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Query: 282 NIQLALKTQCQIFGLNSTLRIYLEGNPVLC 311
L S I+L NP C
Sbjct: 489 P-DGVFD------RLTSLQYIWLHDNPWDC 511
Score = 72.2 bits (177), Expect = 7e-14
Identities = 35/154 (22%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L L L L N LK+ + L L +L S
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA--------------- 419
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
D + V N+ N +T V R + LD L NN+I S+ ++ L
Sbjct: 420 ---YDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD---LHNNRIMSIPKDVTHLQ 473
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L ++ NQL L L+ + L N
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 71.8 bits (176), Expect = 1e-13
Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 27/303 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQL----LVIEQNQLEALPSDIQLFSQLGSLYA 56
LT L +L L+ + + L+ L ++ L L L + ++ ++ L+
Sbjct: 144 NLTKLTFLGLSAAKFRQLD--LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHL 201
Query: 57 NNNRITSL----DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
+ + + + L LQ+ N+ N R F + +L N + +
Sbjct: 202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-ELTRGPTLLNVTLQHIE 260
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDD--IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ- 169
++ KL + + + + + I S + +
Sbjct: 261 TTWKCSVKL-FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319
Query: 170 -------GVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
+ L ++ + + L+ + N L L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379
Query: 222 KMLDISHNLLTTLEETSKTF--LPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNN 277
+ L + N L + + + +LE L VS NSL D+ + +L+ N
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439
Query: 278 IKA 280
+
Sbjct: 440 LTG 442
Score = 55.6 bits (134), Expect = 1e-08
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
L L N I L + + L L LSHN++R++ F+ L+ LD+SHN
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRL--DKDFHGLPVLCKADLAHNNIKAINIQLALK 288
L + S + +L L +S N L K+F L L L+ + +++
Sbjct: 112 LQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 289 TQCQIFGLNSTLRIYLEGNPVLC 311
L+ + +++G
Sbjct: 169 LHLSCILLD-LVSYHIKGGETES 190
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 82.4 bits (204), Expect = 5e-18
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L ++ + NN+ +KS++G + L ++ L + N+L + + +L + L L N+
Sbjct: 39 ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKEL-TNLTYLILTGNQ 96
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGL 118
+ SL +G+ LT L+ + NQ+ + F L NL ++L +NQ+ S+ + L
Sbjct: 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 119 TKLAYLYLSHNQLT 132
T L L LS+NQL
Sbjct: 157 TNLTELDLSYNQLQ 170
Score = 73.9 bits (182), Expect = 4e-15
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 58
LT+L +L L N+L+SL G L+ L+ LV+ +NQL++LP + + L L +
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH 142
Query: 59 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 116
N++ SL G+ LT L ++ +NQ+ + F L L + L NQ+ S+ +
Sbjct: 143 NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202
Query: 117 GLTKLAYLYLSHNQ 130
LT L Y++L N
Sbjct: 203 RLTSLQYIWLHDNP 216
Score = 48.5 bits (116), Expect = 1e-06
Identities = 36/184 (19%), Positives = 75/184 (40%), Gaps = 34/184 (18%)
Query: 99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
+L+ +T + + L + + +++ + + I+ L +R + L NK++
Sbjct: 22 IKANLKKKSVTDA-VTQNELNSIDQIIANNSDIK--SVQGIQYLPNVRYLALGGNKLHDI 78
Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGL 218
+ +L + L+ L L+ N+L+++ F L
Sbjct: 79 S--------------ALK-ELTN---------------LTYLILTGNQLQSLPNGVFDKL 108
Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNN 277
+LK L + N L +L + L L L ++HN L L F L L + DL++N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 278 IKAI 281
++++
Sbjct: 169 LQSL 172
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 79.3 bits (196), Expect = 2e-17
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 36/188 (19%)
Query: 82 NQITMVRRDEFQNLHNLDSISLQN--NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 139
+ I + + + + L I M+++LS L +L LS N + + + +
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSL 66
Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
G++ LR + L N I K IENLD L
Sbjct: 67 SGMENLRILSLGRNLIKK--------------------------IENLDAVA---DTLEE 97
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258
L +S+N++ ++S L +L++L +S+N +T E K L LE+L ++ N L
Sbjct: 98 LWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155
Query: 259 DKDFHGLP 266
K+ +
Sbjct: 156 YKENNATS 163
Score = 76.3 bits (188), Expect = 2e-16
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 10/134 (7%)
Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
EL IE +D L + L LS N + IS G+++L++L + NL+ +E
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS--GMENLRILSLGRNLIKKIE 86
Query: 236 ETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFG 295
LEEL++S+N + L L L +++N I L
Sbjct: 87 NLDA-VADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLA------A 138
Query: 296 LNSTLRIYLEGNPV 309
L+ + L GNP+
Sbjct: 139 LDKLEDLLLAGNPL 152
Score = 74.7 bits (184), Expect = 7e-16
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)
Query: 53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
L+ I +D L L + + N I + + NL +SL N I +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
+ + L L++S+NQ+ L I L LR + +S NKI + +++ +
Sbjct: 87 NLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW----GEIDKLAALD 140
Query: 173 NIFELKLQHNEIEN 186
+ +L L N + N
Sbjct: 141 KLEDLLLAGNPLYN 154
Score = 73.9 bits (182), Expect = 2e-15
Identities = 28/149 (18%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 13 NRLKSLEGQLG-TLSKLQLLVIEQ--NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLR 69
+ ++ E + ++ + + + +E + + + L + N I + L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LS 67
Query: 70 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 129
G+ L++ ++ N I + + L+ + + NQI S+ S + L L LY+S+N
Sbjct: 68 GMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNN 125
Query: 130 QLTEFL-LDDIRGLKRLRTVDLSYNKINK 157
++T + +D + L +L + L+ N +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYN 154
Score = 69.3 bits (170), Expect = 5e-14
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L L+ N ++ + L + L++L + +N ++ + + + L L+ + N+I
Sbjct: 47 LKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQI 105
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
SL G + L L+V M N+IT D+ L L+ + L N + + + +
Sbjct: 106 ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163
Score = 55.5 bits (134), Expect = 3e-09
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
G+ +L L L N +K +E L+ L I NQ+ +L S I+ L LY +NN+
Sbjct: 68 GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNK 126
Query: 61 ITSLDGL--LRGLTKLQVFNMDFNQIT 85
IT+ + L L KL+ + N +
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLY 153
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 81.9 bits (202), Expect = 2e-17
Identities = 46/255 (18%), Positives = 82/255 (32%), Gaps = 28/255 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQL--EALPSDIQL-FSQLGS 53
L L + R+ S ++ +S LQ L +E ++ A P ++ L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 54 LYANNNRITSLDGLLRGL-----TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 108
L N + D L L L+V ++ ++ + L ++ L +N
Sbjct: 126 LNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Query: 109 TSMNS-----SLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKFGT 160
L L L + + +L+ +DLS+N +
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL----R 241
Query: 161 RNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDS 220
G + + L L ++ + L LS LDLS+N+L L
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLDRNP--SPDELPQ 297
Query: 221 LKMLDISHNLLTTLE 235
+ L + N E
Sbjct: 298 VGNLSLKGNPFLDSE 312
Score = 76.9 bits (189), Expect = 7e-16
Identities = 58/287 (20%), Positives = 92/287 (32%), Gaps = 44/287 (15%)
Query: 18 LEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRIT--SLDGLLRGLTKL 74
+E G S LL + + +DI L L RI L G LR L
Sbjct: 36 VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95
Query: 75 QVFNMDFNQITMVRRDEFQ----NLHNLDSISLQNNQITSMNSSLSGL-----TKLAYLY 125
+ + + + +L+ ++L+N + ++ L+ L L L
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 126 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIE 185
++ F + +R L T+DLS N + E L
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPE------------------LGERGLISALCP 197
Query: 186 NLDGALMGIHGLSRLDLSHNKLRTIS---PDDFIGLDSLKMLDISHNLLTTL-EETSKTF 241
L L L + + T S L+ LD+SHN L S +
Sbjct: 198 L------KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251
Query: 242 LPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAINIQLAL 287
L L +S L ++ K L VL DL++N + L
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLDRNPSPDEL 295
Score = 66.1 bits (161), Expect = 3e-12
Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 15/216 (6%)
Query: 81 FNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDD 138
FN + + + +L+ + + + + + + L L + ++ +L
Sbjct: 28 FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFG 87
Query: 139 ---IRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGI- 194
+ G+ L+ + L ++ + + + + + L
Sbjct: 88 ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 195 -HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF----LPALEELF 249
GL L ++ S + +L LD+S N P L+ L
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207
Query: 250 VSHNSLTRLDK----DFHGLPVLCKADLAHNNIKAI 281
+ + + L DL+HN+++
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
Score = 44.1 bits (104), Expect = 4e-05
Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 19/197 (9%)
Query: 98 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 157
+ + + ++ SL L K Q T+ + L+ + + +I
Sbjct: 28 FNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDII-----KSLSLKRLTVRAARIP- 81
Query: 158 FGTRNEGKNQVQGVTNIFELKLQHNEIE-NLDGALMGIHGLSRLDLSHNKLRTISPDDFI 216
G +V G++ + EL L++ E+ L+ G L+ + + D ++
Sbjct: 82 -SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWL 140
Query: 217 G------LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFH-----GL 265
LK+L I+ PAL L +S N
Sbjct: 141 AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200
Query: 266 PVLCKADLAHNNIKAIN 282
P L L + ++ +
Sbjct: 201 PTLQVLALRNAGMETPS 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 78.6 bits (193), Expect = 7e-16
Identities = 37/211 (17%), Positives = 77/211 (36%), Gaps = 31/211 (14%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ--------------NQLEALPSDIQL 47
L L+ + L+ +L + +LQ L E + L +Q
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407
Query: 48 FSQLGSL---------YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
FS L ++ + + L ++V ++ +T++ + L +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLV 465
Query: 99 DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
+ L +N++ ++ +L+ L L L S N L +D + L RL+ + L N++ +
Sbjct: 466 THLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQS 523
Query: 159 GTRNEGKNQVQGVTNIFELKLQHNEIENLDG 189
+ + L LQ N + +G
Sbjct: 524 ----AAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Score = 78.6 bits (193), Expect = 7e-16
Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 37/255 (14%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN-RITSLDG 66
L +R + T +L + + L S+++ +L L N + ++
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390
Query: 67 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 126
L+R L L + ++ + + L++ + + + L+L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 127 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN 186
+H LT L + L + +DLS+N++
Sbjct: 449 AHKDLTV--LCHLEQLLLVTHLDLSHNRL-----------------------------RA 477
Query: 187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPAL 245
L AL + L L S N L + L L+ L + +N L P L
Sbjct: 478 LPPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 246 EELFVSHNSLTRLDK 260
L + NSL + +
Sbjct: 536 VLLNLQGNSLCQEEG 550
Score = 74.8 bits (183), Expect = 1e-14
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
D+ L L + L L L L + L + N+L ALP + L L A++N +
Sbjct: 441 ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499
Query: 63 SLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
++DG+ L +LQ + N++ + L ++LQ N + L ++
Sbjct: 500 NVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558
Score = 62.1 bits (150), Expect = 1e-10
Identities = 37/264 (14%), Positives = 83/264 (31%), Gaps = 26/264 (9%)
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131
L +++ R + + L ++ + +L LS +
Sbjct: 302 CDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKS 361
Query: 132 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGAL 191
T ++ K L+ ++ T + + E + ++ +D
Sbjct: 362 TVLQ-SELESCKELQELEPENKWCLL--TIILLMRALDPLLYEKETLQYFSTLKAVD--- 415
Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS 251
+ LD +K + + +++L ++H LT L + L + L +S
Sbjct: 416 --PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQ--LLLVTHLDLS 471
Query: 252 HNSLTRLDKDFHGLPVLCKADLAHNNIKAI---------------NIQLALKTQCQIFGL 296
HN L L L L + N ++ + N +L Q
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVS 531
Query: 297 NSTLR-IYLEGNPVLCDDSMRAVI 319
L + L+GN + ++ ++ +
Sbjct: 532 CPRLVLLNLQGNSLCQEEGIQERL 555
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 72.7 bits (179), Expect = 4e-15
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNNR 60
D+ L+L+ N+ + +L L L+ + N++ L + + +QL +L + NR
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-TQLLTLILSYNR 89
Query: 61 ITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ + GL L++ ++ N I++V F +L L +++ N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 65.0 bits (159), Expect = 1e-12
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 97
L+ LP I LY + N+ T + L L + ++ N+I+ + F N+
Sbjct: 22 LKVLPKGIPRDVT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 98 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
L ++ L N++ + + GL L L L N +
Sbjct: 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 61.5 bits (150), Expect = 3e-11
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMV 87
L ++ NQ +P ++ + L + +NNRI++L + +T+L + +N++ +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 88 RRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
F L +L +SL N I+ + + + L+ L++L + N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 48.1 bits (115), Expect = 1e-06
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 172 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
++ EL L N+ + L L+ +DLS+N++ T+S F + L L +S+N L
Sbjct: 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 232 TTLEETSKTFLPALEELFVSHNSL 255
+ + L +L L + N +
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 46.9 bits (112), Expect = 3e-06
Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 28/127 (22%)
Query: 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
L NQ T + LS L + LS+N+++ + +L T+ LSYN++
Sbjct: 38 LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC----- 92
Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLK 222
+ G+ L L L N + + F L +L
Sbjct: 93 ----------------IPP-------RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129
Query: 223 MLDISHN 229
L I N
Sbjct: 130 HLAIGAN 136
Score = 42.7 bits (101), Expect = 6e-05
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 54
+T L L L+ NRL+ + L L+LL + N + +P F+ L +L
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA--FNDLSAL 128
Score = 35.0 bits (81), Expect = 0.024
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 29/111 (26%)
Query: 124 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE 183
LYL NQ T + ++ K L +DLS N+I+ L +
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIST---------------------LSNQS 73
Query: 184 IENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
N+ L L LS+N+LR I P F GL SL++L + N ++ +
Sbjct: 74 FSNMTQ-------LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117
Score = 31.9 bits (73), Expect = 0.26
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 38
GL L L L+ N + + EG LS L L I N L
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.4 bits (64), Expect = 3.6
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 246 EELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
EL++ N T + K+ L DL++N I +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL 69
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 69.7 bits (171), Expect = 3e-14
Identities = 26/146 (17%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
+ L ++ + + L + ++ + + Q ++ ++N I LDG
Sbjct: 2 VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF 60
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLY 125
L +L+ ++ N+I + Q L +L + L NN + + L+ L L YL
Sbjct: 61 -PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119
Query: 126 LSHNQLTE------FLLDDIRGLKRL 145
+ N +T +++ + ++ L
Sbjct: 120 ILRNPVTNKKHYRLYVIYKVPQVRVL 145
Score = 63.9 bits (156), Expect = 3e-12
Identities = 26/130 (20%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 137
+ I + ++ N + L+ +I + + + L + + S N++ + LD
Sbjct: 3 KLTAELIE--QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD 58
Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG--ALMGIH 195
L+RL+T+ ++ N+I + G Q + ++ EL L +N + L L +
Sbjct: 59 GFPLLRRLKTLLVNNNRICRIGE-----GLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 196 GLSRLDLSHN 205
L+ L + N
Sbjct: 114 SLTYLCILRN 123
Score = 57.4 bits (139), Expect = 5e-10
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 131 LTEFLLDDIRGL---KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
LT L++ R R +DL KI +N + + NEI L
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRKL 57
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALE 246
DG + L L +++N++ I L L L +++N L L + L +L
Sbjct: 58 DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116
Query: 247 ELFVSHNSLTRLD 259
L + N +T
Sbjct: 117 YLCILRNPVTNKK 129
Score = 46.2 bits (110), Expect = 3e-06
Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 22/128 (17%)
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
+ L+ + + + + LD+ + +E T L + + S N + +LD
Sbjct: 2 VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGAT-LDQFDAIDFSDNEIRKLD 58
Query: 260 KDFHGLPVLCKADLAHNNIKAI-NIQLALKTQCQIFGLNS----------------TLR- 301
F L L + +N I I L + +L
Sbjct: 59 -GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
Query: 302 IYLEGNPV 309
+ + NPV
Sbjct: 118 LCILRNPV 125
Score = 35.8 bits (83), Expect = 0.010
Identities = 22/86 (25%), Positives = 29/86 (33%), Gaps = 24/86 (27%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L L +NNNR+ + L +ALP L L NN +
Sbjct: 63 LRRLKTLLVNNNRICRIGEGL---------------DQALPD-------LTELILTNNSL 100
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQIT 85
L L L L L + N +T
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVT 126
Score = 35.4 bits (82), Expect = 0.014
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 223 MLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
M+ ++ L+ + + EL + + ++ L D + N I+ +
Sbjct: 1 MVKLTAELIEQAAQYTN--AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL 57
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 69.3 bits (170), Expect = 7e-14
Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYA 56
LT L L+L N+L+SL G L+ L L + NQL++LP+ + F +QL L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV--FDKLTQLKELAL 107
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
N N++ SL DG+ LT+L+ + NQ+ V F L +L I L +N
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159
Score = 69.3 bits (170), Expect = 7e-14
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
+L L N LKSL G L+ L L + N+L++LP+ + +L + L L + N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTN 86
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
++ SL +G+ LT+L+ ++ NQ+ + F L L + L NQ+ S+ +
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 118 LTKLAYLYLSHNQ 130
LT L Y++L N
Sbjct: 147 LTSLQYIWLHDNP 159
Score = 58.5 bits (142), Expect = 3e-10
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 29 QLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 86
L +E N L++LP+ + + L LY N++ SL +G+ LT L N+ NQ+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 87 VRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 131
+ F L L ++L NQ+ S+ + LT+L L L NQL
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 58.1 bits (141), Expect = 5e-10
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
++P+ I + L N + SL +G+ LT L + N++ + F L
Sbjct: 19 RTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 97 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 132
+L ++L NQ+ S+ + + LT+L L L+ NQL
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
Score = 40.8 bits (96), Expect = 3e-04
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 11/136 (8%)
Query: 176 ELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
L L+ N +++L +G + L++L L NKL+++ F L SL L++S N L +L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 235 EETSKTFLPALEELFVSHNSLTRL-DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQI 293
L L+EL ++ N L L D F L L L N +K++ +
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV--------PDGV 143
Query: 294 F-GLNSTLRIYLEGNP 308
F L S I+L NP
Sbjct: 144 FDRLTSLQYIWLHDNP 159
Score = 36.6 bits (85), Expect = 0.008
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV----TNIFELK 178
YL L N L L L + L NK+ GV T++ L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN---------GVFNKLTSLTYLN 82
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
L N++++L +G + L L L+ N+L+++ F L LK L + N L
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 68.5 bits (168), Expect = 1e-13
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 8 LFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNNRITS 63
L LN+N L + G G L L L +++NQL + + S + L N+I
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA-SHIQELQLGENKIKE 92
Query: 64 L-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
+ + + GL +L+ N+ NQI+ V F++L++L S++L +N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 63.5 bits (155), Expect = 6e-12
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 29 QLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQIT 85
L++ N+L + SD L L N++T + G + +Q + N+I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 86 MVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHN 129
+ F LH L +++L +NQI+ M S L L L L+ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 62.7 bits (153), Expect = 8e-12
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95
L+ +P DI L + L N+N + + DGL L L + NQ+T + + F+
Sbjct: 20 LKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 96 HNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 132
++ + L N+I + N GL +L L L NQ++
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Score = 51.9 bits (125), Expect = 5e-08
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 75 QVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 132
++ N++ + D F L +L + L+ NQ+T + + G + + L L N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 133 EFLLDDIRGLKRLRTVDLSYNKI 155
E GL +L+T++L N+I
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQI 114
Score = 43.8 bits (104), Expect = 2e-05
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 176 ELKLQHNEIENL--DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTT 233
EL L NE+ + DG + L +L+L N+L I P+ F G ++ L + N +
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 234 LEETSKTFLPALEELFVSHNSLTR 257
+ L L+ L + N ++
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISC 116
Score = 43.5 bits (103), Expect = 3e-05
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 123 YLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINK-----FGTRNEGKNQVQGVTNIFE 176
L L+ N+L D + L L ++L N++ F +G ++I E
Sbjct: 33 ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF----------EGASHIQE 82
Query: 177 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
L+L N+I+ + + +G+H L L+L N++ + P F L+SL L+++ N
Sbjct: 83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 41.1 bits (97), Expect = 2e-04
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 54
G + + L L N++K + L +L+ L + NQ+ + F L SL
Sbjct: 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSL 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 67.8 bits (166), Expect = 3e-13
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYA 56
L +L L+L +N+L +L G +L++L +L + NQL LPS + F L L+
Sbjct: 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV--FDRLVHLKELFM 119
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
N++T L + LT L +D NQ+ + F L +L L N
Sbjct: 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170
Score = 63.2 bits (154), Expect = 1e-11
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 38 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
++P+ I +Q LY ++N+IT L G+ L L+ + NQ+ + F +L
Sbjct: 31 HASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 97 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
L + L NQ+T + S++ L L L++ N+LTE L I L L + L N+
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146
Score = 62.4 bits (152), Expect = 2e-11
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 59
T+ L+L++N++ LE G +L L+ L + NQL ALP + L +QL L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTN 98
Query: 60 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 118
++T L + F L +L + + N++T + + L
Sbjct: 99 QLTVLPSAV------------------------FDRLVHLKELFMCCNKLTELPRGIERL 134
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
T L +L L NQL L L L N
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 47.4 bits (113), Expect = 2e-06
Identities = 47/141 (33%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
TN L L N+I L G + L L L N+L + F L L +LD+ N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 231 LTTLEETSKTF--LPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALK 288
LT L S F L L+ELF+ N LT L + L L L N +K+I
Sbjct: 100 LTVLP--SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI------- 150
Query: 289 TQCQIF-GLNSTLRIYLEGNP 308
F L+S YL GNP
Sbjct: 151 -PHGAFDRLSSLTHAYLFGNP 170
Score = 39.3 bits (92), Expect = 0.001
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV----TNIFELK 178
LYL NQ+T+ L L+ + L N++ GV T + L
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV---------GVFDSLTQLTVLD 94
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
L N++ L + L L + NKL + P L L L + N L ++
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHG 153
Query: 238 SKTFLPALEELFVSHN 253
+ L +L ++ N
Sbjct: 154 AFDRLSSLTHAYLFGN 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 67.1 bits (163), Expect = 2e-12
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 169 QGVTNIFELKLQHN-EIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
G N+ EL +++ +++L L G+ L L + + LR ++PD F L L++
Sbjct: 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87
Query: 227 SHNLLTTLEETSKTFLP-ALEELFVSHNSLT 256
S N L +L KT +L+EL +S N L
Sbjct: 88 SFNALESLSW--KTVQGLSLQELVLSGNPLH 116
Score = 65.9 bits (160), Expect = 5e-12
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 32/144 (22%)
Query: 190 ALMGIHGLSRLDLSHNK-LRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
L G L+ L + + + L+ + D GL L+ L I + L + + F P L L
Sbjct: 26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85
Query: 249 FVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNP 308
+S N+L L S + L GNP
Sbjct: 86 NLSFNALESLSWK-------------------------------TVQGLSLQELVLSGNP 114
Query: 309 VLCDDSMRAVIDAMETINNNTKIH 332
+ C ++R + E
Sbjct: 115 LHCSCALRWLQRWEEEGLGGVPEQ 138
Score = 64.4 bits (156), Expect = 1e-11
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 35 QNQLEALPSDIQLFSQLGSLY-ANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 92
++ + L LY N + L LRGL +L+ + + + V D F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 132
L ++L N + S++ L L LS N L
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 58.6 bits (141), Expect = 9e-10
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 57 NNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 114
+ + SL L G L ++ Q + + + + L L ++++ + + + +
Sbjct: 17 RDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 115 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+L+ L LS N L ++GL L+ + LS N ++
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 49.4 bits (117), Expect = 1e-06
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 25/111 (22%)
Query: 1 GLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
G +L L++ N L+ LE L L +L+ L I ++ L +
Sbjct: 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---------------- 72
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 109
+L N+ FN + + Q L +L + L N +
Sbjct: 73 ------PDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 63.2 bits (154), Expect = 4e-12
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 11/142 (7%)
Query: 14 RLKSLEGQLGTLSKLQLLVIE--QNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 71
R LE + T + ++ LV++ ++ + F L L N + S+ L L
Sbjct: 12 RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKL 70
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHN 129
KL+ + N+I + L NL ++L N++ +++ L L L L L +
Sbjct: 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Query: 130 QLTE------FLLDDIRGLKRL 145
++T + + L L
Sbjct: 131 EVTNLNDYRESVFKLLPQLTYL 152
Score = 52.8 bits (127), Expect = 2e-08
Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
R +R + L K N N+ L L + + ++ L + L +
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEF----VNLEFLSLINVGLISVSN-LPKLPKLKK 75
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258
L+LS N++ L +L L++S N L + L L+ L + + +T L
Sbjct: 76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135
Query: 259 D 259
+
Sbjct: 136 N 136
Score = 50.5 bits (121), Expect = 9e-08
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 93 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
NL+ +SL N + S+ S+L L KL L LS N++ L L L ++LS
Sbjct: 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDG 189
NK+ T ++ + + L L + E+ NL+
Sbjct: 105 NKLKDISTLEP----LKKLECLKSLDLFNCEVTNLND 137
Score = 36.3 bits (84), Expect = 0.006
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
Query: 196 GLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSL 255
G S +D+ + + L LD + +E + F LE L + + L
Sbjct: 4 GSSGMDMKRRIHLELRNRTPAAVRELV-LDNCKSNDGKIEGLTAEF-VNLEFLSLINVGL 61
Query: 256 TRLDKDFHGLPVLCKADLAHNNIKAINIQLA 286
+ + LP L K +L+ N I LA
Sbjct: 62 ISVS-NLPKLPKLKKLELSENRIFGGLDMLA 91
Score = 34.7 bits (80), Expect = 0.021
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 24/86 (27%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L L L+ NR+ L + L L + N++
Sbjct: 70 LPKLKKLELSENRIFGGLDMLA----------------------EKLPNLTHLNLSGNKL 107
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQIT 85
+ L L+ L L+ ++ ++T
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVT 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 66.5 bits (163), Expect = 4e-12
Identities = 70/391 (17%), Positives = 126/391 (32%), Gaps = 83/391 (21%)
Query: 3 TDLNWLFLNNNRL-----KSLEGQLGTLS-KLQLLVIEQNQL-----EALPSDIQLFSQL 51
L L L +N L + L T S K+Q L ++ L L S ++ L
Sbjct: 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTL 115
Query: 52 GSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNLHN 97
L+ ++N + +GLL +L+ +++ ++ + +
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AASCEPLASVLRAKPD 171
Query: 98 LDSISLQNNQI--TSMNSSLSGL----TKLAYLYLSHNQLTE----FLLDDIRGLKRLRT 147
+++ NN I + GL +L L L +T L + LR
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231
Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDL 202
+ L NK+ G + + + L + I +L L L L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 203 SHNKL-----RTISPDDFIGLDSLKMLDISHNLLTT-----LEETSKTFLPALEELFVSH 252
+ N+L R + L+ L + T L EL +S+
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISN 350
Query: 253 NSLTRLDKDFHGLPVLCKA-----------DLAHNNIK---AINIQLALKTQCQIFGLNS 298
N L D G+ LC+ LA ++ ++ L N
Sbjct: 351 NRLE--DA---GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA-------NH 398
Query: 299 TLR-IYLEGNPVLCDDSMRAVIDAMETINNN 328
+LR + L N L D + +++++
Sbjct: 399 SLRELDLSNNC-LGDAGILQLVESVRQPGCL 428
Score = 53.0 bits (128), Expect = 9e-08
Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 69/317 (21%)
Query: 72 TKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLY 125
+Q ++ +++ R E L + L + +T ++S+L LA L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 126 LSHNQLT---------------------------------EFLLDDIRGLKRLRTVDLSY 152
L N+L L +R L L+ + LS
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGLSRLDLSHNKL 207
N + G + + + + +L+L++ + E L L L +S+N +
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 208 -----RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTF------LPALEELFVSHNSLT 256
R + L+ L + +T + + +L EL + N L
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 257 R------LDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLR-IYLEGNPV 309
H L + I A C++ +L+ + L GN
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLRAKESLKELSLAGNE- 295
Query: 310 LCDDSMRAVIDAMETIN 326
L D+ R + + +
Sbjct: 296 LGDEGARLLCETLLEPG 312
Score = 38.0 bits (89), Expect = 0.005
Identities = 34/193 (17%), Positives = 62/193 (32%), Gaps = 45/193 (23%)
Query: 5 LNWLFLNNNRL-----KSLEGQLGTLSKLQLLVIEQNQL---------EALPSDIQLFSQ 50
L L++ + L L L+ L + N+L E L Q
Sbjct: 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP---GCQ 314
Query: 51 LGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVRRDE---------FQNLH 96
L SL+ + T+ +L L + N++ D Q
Sbjct: 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE----DAGVRELCQGLGQPGS 370
Query: 97 NLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEF----LLDDIRGLK-RLR 146
L + L + ++ S+ ++L L L LS+N L + L++ +R L
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 430
Query: 147 TVDLSYNKINKFG 159
+ L ++
Sbjct: 431 QLVLYDIYWSEEM 443
Score = 36.5 bits (85), Expect = 0.016
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 39/164 (23%)
Query: 3 TDLNWLFLNNNRLKS------LEGQLGTLSKLQLLVIEQNQL-----EALPSDIQLFSQL 51
L L L N L E L +L+ L ++ S + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343
Query: 52 GSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNLHN 97
L +NNR+ GL + + L+V + ++ D H+
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS----DSSCSSLAATLLANHS 399
Query: 98 LDSISLQNNQITSMNSSLSGL--------TKLAYLYLSHNQLTE 133
L + L NN + ++ + L L L L +E
Sbjct: 400 LRELDLSNNCLG--DAGILQLVESVRQPGCLLEQLVLYDIYWSE 441
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 62.0 bits (151), Expect = 6e-12
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 17 SLEGQLGTLSKLQLLVIE--QNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKL 74
LE + T S ++ LV++ ++ L F +L L N +TS+ L + L KL
Sbjct: 8 HLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK-LNKL 66
Query: 75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLT 132
+ + N+++ + NL ++L N+I +++ L L L L L + ++T
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
Query: 133 ------EFLLDDIRGLKRLRTVD 149
E + + L L D
Sbjct: 127 NLNDYRENVFKLLPQLTYLDGYD 149
Score = 52.8 bits (127), Expect = 1e-08
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 59 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMNSSLSG 117
RI L+ R + ++ +D ++ + + L+ +S N +TS+ ++L
Sbjct: 5 RRIH-LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK 62
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L KL L LS N+++ L L ++LS NKI T ++ + N+ L
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP----LKKLENLKSL 118
Query: 178 KLQHNEIENLDG 189
L + E+ NL+
Sbjct: 119 DLFNCEVTNLND 130
Score = 52.4 bits (126), Expect = 1e-08
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
R ++ + L ++ N+ + L + + ++ L ++ L +
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEF----EELEFLSTINVGLTSIAN-LPKLNKLKK 68
Query: 200 LDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK-TFLPALEELFVSHNSLTRL 258
L+LS N++ +L L++S N + L L L+ L + + +T L
Sbjct: 69 LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128
Query: 259 D 259
+
Sbjct: 129 N 129
Score = 34.7 bits (80), Expect = 0.019
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 224 LDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINI 283
LD S + LE + LE L + LT + + L L K +L+ N +
Sbjct: 24 LDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSGGLE 81
Query: 284 QLA 286
LA
Sbjct: 82 VLA 84
Score = 32.3 bits (74), Expect = 0.13
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 24/86 (27%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L L L++NR+ L E P+ L L + N+I
Sbjct: 63 LNKLKKLELSDNRVSGGLEVLA---------------EKCPN-------LTHLNLSGNKI 100
Query: 62 TSLDGL--LRGLTKLQVFNMDFNQIT 85
L + L+ L L+ ++ ++T
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVT 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 60.1 bits (146), Expect = 5e-10
Identities = 47/346 (13%), Positives = 99/346 (28%), Gaps = 77/346 (22%)
Query: 22 LGTLSKLQLLVIEQNQL-----EALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGL 71
+ S ++ ++ + + +++ + + + + + N I L +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 131
L++ V+ + + L L +L KL + LS N
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLL-------------LQALLKCPKLHTVRLSDNAF 106
Query: 132 T----EFLLDDIRGLKRLRTVDLSYNKINKFGTR--------NEGKNQVQGVTNIFELKL 179
E L+D + L + L N + + + + +
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166
Query: 180 QHNEIEN-----LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL-----DSLKMLDISHN 229
N +EN L + + N +R + + LK+LD+ N
Sbjct: 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226
Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK---AINIQLA 286
T S AL S +L L L + A + A
Sbjct: 227 TFT--HLGSS----ALAIALKSWPNLREL-------------GLNDCLLSARGAAAVVDA 267
Query: 287 LKTQCQIFGLNSTLR-IYLEGNPVLCDDSMRAVIDAMETINNNTKI 331
N L+ + L+ N + D++R + ++ +
Sbjct: 268 FSK-----LENIGLQTLRLQYNE-IELDAVRTLKTVID--EKMPDL 305
Score = 40.9 bits (96), Expect = 6e-04
Identities = 35/202 (17%), Positives = 69/202 (34%), Gaps = 49/202 (24%)
Query: 3 TDLNWLFLNNNRL--------------KSLEGQLGTLSKLQLLVIEQNQLE-----ALPS 43
T L L+L+NN L ++ + L+ ++ +N+LE
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 44 DIQLFSQLGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE------ 91
Q L ++ N I L L +L+V ++ N T
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT----HLGSSALA 237
Query: 92 --FQNLHNLDSISLQNNQITSMN-----SSLSGL--TKLAYLYLSHNQLT----EFLLDD 138
++ NL + L + +++ + S L L L L +N++ L
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297
Query: 139 IRG-LKRLRTVDLSYNKINKFG 159
I + L ++L+ N+ ++
Sbjct: 298 IDEKMPDLLFLELNGNRFSEED 319
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 56.5 bits (137), Expect = 9e-10
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 23/108 (21%)
Query: 1 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
LT L L L+ N+++SL +G L+KL +L + +N+L++LP
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP----------------- 92
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
+G+ LT+L+ +D NQ+ V F L +L I L N
Sbjct: 93 -----NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135
Score = 56.1 bits (136), Expect = 1e-09
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+ L L +N+L+SL G L++L L + QNQ+++LP
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------------ 69
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 120
G+ LTKL + + N++ + F L L ++L NQ+ S+ + LT
Sbjct: 70 ----GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Query: 121 LAYLYLSHNQ 130
L ++L N
Sbjct: 126 LQKIWLHTNP 135
Score = 38.8 bits (91), Expect = 0.001
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
RL+L NKL+++ F L L L +S N + +L + L L L++ N L L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91
Query: 259 -DKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF-GLNSTLRIYLEGNP 308
+ F L L + L N +K++ IF L S +I+L NP
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSV--------PDGIFDRLTSLQKIWLHTNP 135
Score = 33.8 bits (78), Expect = 0.045
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 14/112 (12%)
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV----TNIFELK 178
L L N+L L +L + LS N+I GV T + L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD---------GVFDKLTKLTILY 82
Query: 179 LQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
L N++++L +G + L L L N+L+++ F L SL+ + + N
Sbjct: 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 33.4 bits (77), Expect = 0.061
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 103 LQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNK 154
L++N++ S+ + LT+L L LS NQ+ + D + L L L NK
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL---YLHENK 87
Score = 33.0 bits (76), Expect = 0.088
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 177 LKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLE 235
L+L+ N++++L G + L++L LS N+++++ F L L +L + N L +L
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 236 ETSKTFLPALEELFVSHNSLTR 257
L L+EL + N L
Sbjct: 93 NGVFDKLTQLKELALDTNQLKS 114
Score = 28.4 bits (64), Expect = 2.7
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 149 DLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKL 207
+L NK+ +T + +L L N+I++L DG + L+ L L NKL
Sbjct: 34 ELESNKLQSLPH-----GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Query: 208 RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
+++ F L LK L + N L ++ + L +L+++++ N
Sbjct: 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 4e-09
Identities = 58/371 (15%), Positives = 118/371 (31%), Gaps = 100/371 (26%)
Query: 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
+ +L + ++ + S + + IEQ + L +D Q+F++ N +R+
Sbjct: 89 INYKFL------MSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVFAKY-----NVSRLQ 135
Query: 63 SLDGLLRGLTKLQ------VFNM----------------------DFNQ--ITMVRRDE- 91
L + L +L+ + + DF + + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 92 ------FQNL-HNLDSISLQN-----NQITSMNSSLSGLTKLAYLYLSHNQLTEFL--LD 137
Q L + +D N ++S + L +L L L L
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYENCLLVLL 251
Query: 138 DIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGL 197
+++ K +LS KI TR + + L H+ + + + L
Sbjct: 252 NVQNAKAWNAFNLS-CKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL--L 307
Query: 198 SR-LDLSHNKLR----TISP-----------DDFIGLDSLKMLDISHNLLTTLEETSKTF 241
+ LD L T +P D D+ K ++ L ++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-----KLTTIIESS 362
Query: 242 LPALE-----ELFVSHNSLTRLDKDFHGLP--VLCK--ADLAHNNIKAINIQLALKTQCQ 292
L LE ++F L+ H +P +L D+ +++ + +L + +
Sbjct: 363 LNVLEPAEYRKMFD---RLSVFPPSAH-IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 293 IFGLNSTLRIY 303
ST+ I
Sbjct: 419 KQPKESTISIP 429
Score = 55.6 bits (133), Expect = 2e-08
Identities = 59/319 (18%), Positives = 105/319 (32%), Gaps = 85/319 (26%)
Query: 1 GLTDLNWLFLNNNRLK--SLEGQLGTLSK---LQLL--VIEQNQLEALPSDI-----QLF 48
+TD FL+ SL+ TL+ LL ++ + LP ++ +
Sbjct: 276 QVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRL 330
Query: 49 SQLGSL------------YANNNRIT-----SLDGL----LRGL-TKLQVFNMDFNQIT- 85
S + + N +++T SL+ L R + +L VF + I
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPT 389
Query: 86 ---------MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
+++ D ++ L SL Q S+ + YL L L
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI----YLELKVK------L 439
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH-NEIENLDGALMGIH 195
++ L R VD YN F + + + + H IE+ + +
Sbjct: 440 ENEYALHR-SIVD-HYNIPKTFDSDDLIPPYLDQY--FYSHIGHHLKNIEHPERMTL--- 492
Query: 196 GLSR--LDLS--HNKLR-TISPDDFIG--LDSLKMLDI-------SHNLLTTLEETSKTF 241
LD K+R + + G L++L+ L + L F
Sbjct: 493 -FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 242 LPALEELFVS--HNSLTRL 258
LP +EE + + L R+
Sbjct: 552 LPKIEENLICSKYTDLLRI 570
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 54.2 bits (131), Expect = 6e-09
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 23/105 (21%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
T L+L +N++ LE G L++L L ++ NQL LP+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA------------------ 71
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
G+ LT+L +++ NQ+ + R F NL +L I L NN
Sbjct: 72 ----GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 48.4 bits (116), Expect = 5e-07
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L ++P+ I + LY +N+IT L+ G+ LT+L ++D NQ+T++ F
Sbjct: 19 KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 95 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 129
L L +SL +NQ+ S+ + L L +++L +N
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 43.4 bits (103), Expect = 3e-05
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 130
T QV + NQIT + F L L + L NNQ+T + + + LT+L L L+ NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 131 L 131
L
Sbjct: 90 L 90
Score = 43.4 bits (103), Expect = 3e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YAN 57
LT L L L+NN+L L G L++L L + NQL+++P F L SL +
Sbjct: 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGA--FDNLKSLTHIWLL 110
Query: 58 NN 59
NN
Sbjct: 111 NN 112
Score = 35.7 bits (83), Expect = 0.012
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 97 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 132
+ L +NQIT + + LT+L L L +NQLT
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Score = 29.9 bits (68), Expect = 0.97
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
L L N++ + P F L L LD+ +N LT L
Sbjct: 34 VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
Score = 28.7 bits (65), Expect = 2.5
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 172 TNIFELKLQHNEIENLD-GALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
T L L N+I L+ G + L+RLDL +N+L + F L L L ++ N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 231 L 231
L
Sbjct: 90 L 90
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 53.4 bits (129), Expect = 1e-08
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
TD L+LNNN++ LE G L LQ L N+L A+P+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
G+ LT+L +++ N + + R F NL +L I L NN
Sbjct: 75 ----GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 46.9 bits (112), Expect = 2e-06
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+L ++P+ I + L+ NNN+IT L G+ L LQ + N++T + F
Sbjct: 22 IRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 95 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 129
L L + L +N + S+ + L L ++YL +N
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 43.8 bits (104), Expect = 2e-05
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 130
T Q ++ NQIT + F +L NL + +N++T++ + + LT+L L L+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 131 L 131
L
Sbjct: 93 L 93
Score = 43.4 bits (103), Expect = 3e-05
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 2 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YAN 57
L +L L+ N+N+L ++ G L++L L + N L+++P F L SL Y
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGA--FDNLKSLTHIYLY 113
Query: 58 NN 59
NN
Sbjct: 114 NN 115
Score = 35.3 bits (82), Expect = 0.016
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 97 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 132
+ + L NNQIT + + L L LY + N+LT
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70
Score = 29.9 bits (68), Expect = 0.91
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 199 RLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
RL L++N++ + P F L +L+ L + N LT +
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72
Score = 28.0 bits (63), Expect = 3.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 172 TNIFELKLQHNEIENL-DGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
T+ L L +N+I L G + L +L + NKL I F L L LD++ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 231 L 231
L
Sbjct: 93 L 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 48.9 bits (117), Expect = 2e-06
Identities = 41/311 (13%), Positives = 100/311 (32%), Gaps = 63/311 (20%)
Query: 3 TDLNWLFLNNNRLKS------LEGQLGTLSKLQLLVIEQNQL---------EALPSDIQL 47
+ L L+ N L S ++ T + + L + N L + L + +
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA---I 78
Query: 48 FSQLGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQIT--------MVRRDEFQ 93
+ + SL + N ++ + L + V ++ +N + +
Sbjct: 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138
Query: 94 NLHNLDSISLQNNQIT-----SMNSSLSGL-TKLAYLYLSHNQLT----EFLLDDIRGL- 142
++ +L+ L+ N + + L+ + + L L N L L + +
Sbjct: 139 SITSLN---LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIP 195
Query: 143 KRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI-----ENLDGALMGIHGL 197
+ ++DLS N + ++ L L N + ENL + L
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255
Query: 198 SRLDLSHNKLRTISPDDFIGL-------DSLKMLDISHNLLT-----TLEETSKTFLPAL 245
+ L ++ ++ +S + L + ++D + + + +
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315
Query: 246 EELFVSHNSLT 256
+ + + L
Sbjct: 316 DVPSLLNQCLI 326
Score = 41.2 bits (97), Expect = 5e-04
Identities = 40/271 (14%), Positives = 79/271 (29%), Gaps = 53/271 (19%)
Query: 103 LQNNQITS-----MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLK-RLRTVDLSY 152
+ + S + L LS N L L+ + +++LS
Sbjct: 1 MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60
Query: 153 NKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN-----LDGALMGIH-GLSRLDLSHNK 206
N + + + N+ L L N + L L I ++ LDL N
Sbjct: 61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120
Query: 207 LRTISPDDFIGL-----DSLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLT 256
+ S +F S+ L++ N L L + + L + N+L
Sbjct: 121 FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180
Query: 257 RLDKDFHGLPVLCKA-----------DLAHNNIK---AINIQLALKTQCQIFGLNSTLR- 301
L K DL+ N + + + + +
Sbjct: 181 SK-----NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI------PNHVVS 229
Query: 302 IYLEGNPVLCDDSMRAVIDAMETINNNTKIH 332
+ L N L S+ + +++ + ++
Sbjct: 230 LNLCLNC-LHGPSLENLKLLKDSLKHLQTVY 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-05
Identities = 81/457 (17%), Positives = 142/457 (31%), Gaps = 170/457 (37%)
Query: 2 LTDLNWLFLNNNRLKSLEGQL-----GTLSKLQLLVIEQNQLEAL-----PSDIQLFSQL 51
LT+ +L N + +L +L TL K + L+ +N + A P D + S L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSAL 145
Query: 52 --------GSLYA------NNNR-------------------ITSLDGLLRGLTKLQVFN 78
L A N + I L L +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT---T 202
Query: 79 MDFNQITMVRRDEFQNLHNLDSIS-LQNNQIT-----------SMNSSLSGLTKLAYLYL 126
+D ++ F L+ + L+N T S L G+ +LA+ +
Sbjct: 203 LDAEKV-------FT--QGLNILEWLENPSNTPDKDYLLSIPISCP--LIGVIQLAHYVV 251
Query: 127 SHNQL---TEFLLDDIRGLKRLRTV---DL-------------SYNKINK------F--G 159
+ L L ++G T L S+ + F G
Sbjct: 252 TAKLLGFTPGELRSYLKGA----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG 307
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGA--LM-GIHGLSRLDL-SH-NKLRT----- 209
R + T++ + + +EN +G M I L++ + + NK +
Sbjct: 308 VRC---YEAYPNTSL-PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 210 ----IS----PDDFI--GL-DSLKMLDIS-HNL--LTTLEET-----------SKTFLPA 244
IS + + G SL L+++ + L+++ S FLP
Sbjct: 364 KQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP- 422
Query: 245 LEELFVS---HNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIF----GLN 297
V+ H+ L L + DL NN+ + Q ++ G +
Sbjct: 423 -----VASPFHSHL--LVPASDLI----NKDLVKNNVSFNAKDI----QIPVYDTFDGSD 467
Query: 298 STLRIYLEGN--PVLCDDSMRAVIDAMETINNNTKIH 332
LR+ L G+ + D +R + ET H
Sbjct: 468 --LRV-LSGSISERIVDCIIRLPVK-WETTTQFKATH 500
Score = 40.8 bits (95), Expect = 9e-04
Identities = 24/148 (16%), Positives = 42/148 (28%), Gaps = 44/148 (29%)
Query: 192 MGIHGLSRLDLSHNKLRT---ISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALE-- 246
M + L LSH L + F L+ + L E ++ F E
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQ--E---QFNKILPEPTEGFAADDEPT 55
Query: 247 ---EL------FVSH---------------NSLTRLDKDFHGLPVLCKADLAHNNIKAIN 282
EL +VS LT + + L N+I A+
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY----------LEGNDIHALA 105
Query: 283 IQLALKTQCQIFGLNSTLRIYLEGNPVL 310
+L + + ++ Y+ +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMA 133
Score = 37.0 bits (85), Expect = 0.014
Identities = 62/400 (15%), Positives = 114/400 (28%), Gaps = 139/400 (34%)
Query: 31 LVIEQNQLEA---LPSDI-----QL---FSQLGSL------YANNNRITSLDGLL-R--G 70
L + LE +P+ QL F++ L +A ++ T+ L+ + G
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNK--ILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 71 LTKLQVFNMDFNQITMVRR---DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 127
V Q V EF+N + L+ N I
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCY------LEGNDI------------------- 101
Query: 128 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENL 187
H + L ++ L + + + +Y R K
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-------------------- 141
Query: 188 DGALMGIHGLSRLDLSHNKLRTI-----SPDDFIGLDSLKMLDISHNLLTTLEETSKTFL 242
+ AL + + +L I + DD+ + L+ + +T+
Sbjct: 142 NSAL-----FRAVGEGNAQLVAIFGGQGNTDDY--FEELR-------------DLYQTYH 181
Query: 243 PALEELFVSH----NSLTRLDKDF-----HGLPV---LCKADLAHNN---------IKAI 281
+ +L + L R D GL + L + I
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 282 NI-QLA-LKTQCQIFGLN-STLRIYLEGNPVLCDDSMRAVIDAM----ETINNNTKIHGE 334
+ QLA ++ G LR YL+G + AV A E+ + + +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR---K 298
Query: 335 TI---------CQ---PDSNETSTTTTTTTTTTPEPTPAP 362
I C P+++ + + E P+P
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-EGVPSP 337
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 43.0 bits (100), Expect = 1e-04
Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 25/169 (14%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
DL+ + L +L ++ + L + + L++L ++ S ++ +
Sbjct: 161 QVDLSPVLDAMPLLNNL--KIKGTNNLSIGKKPRPNLKSL--------EIISGGLPDSVV 210
Query: 62 TSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF------QNLHNLDSISLQNNQIT----S 110
+ L L KL ++ + + F NL + + + +
Sbjct: 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE 270
Query: 111 MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSYNKI 155
M L +L + +S LT LLD + +K L+ +++ YN +
Sbjct: 271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
Score = 40.3 bits (93), Expect = 9e-04
Identities = 35/264 (13%), Positives = 75/264 (28%), Gaps = 44/264 (16%)
Query: 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 64
+ + N + EG + I + L + L +L S+
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187
Query: 65 DGL-LRGLTKLQVFNMDF--NQITMVRRDEFQNLHNLD-----SISLQNNQITSMNSSLS 116
L L++ + + + + + NL L + + S
Sbjct: 188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247
Query: 117 G--LTKLAYLYLSHNQLTEFLLDDI---RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
L +L + + +++ L +L T+D+S + G
Sbjct: 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG------------ 295
Query: 172 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL-KMLDISHNL 230
L + I L +++ +N +S + L K L + ++
Sbjct: 296 ------------ARLLLDHVDKIKHLKFINMKYNY---LSDE---MKKELQKSLPMKIDV 337
Query: 231 LTTLEETSKTFLPALEELFVSHNS 254
+ E P + EL H+
Sbjct: 338 SDSQEYDDDYSYPMITELEHHHHH 361
Score = 38.4 bits (88), Expect = 0.003
Identities = 24/154 (15%), Positives = 51/154 (33%), Gaps = 18/154 (11%)
Query: 3 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 62
+L+ LKSLE G L + I + L L + L+ + Y + +
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL-EKLVLYVGV-EDYGFDGDMN 240
Query: 63 SLDGLLRG--LTKLQVFNMDFNQIT---MVRRDEFQNLHNLDSISLQNNQITSMN----- 112
L L+ + + + E L L+++ + +T
Sbjct: 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL 300
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 146
+ + L ++ + +N L++ K L+
Sbjct: 301 DHVDKIKHLKFINMKYNYLSD------EMKKELQ 328
Score = 37.6 bits (86), Expect = 0.005
Identities = 22/202 (10%), Positives = 63/202 (31%), Gaps = 25/202 (12%)
Query: 78 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 137
D + I + + + + + + S L+ + + L +
Sbjct: 121 GEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK 180
Query: 138 DIRGLK-------RLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNE------I 184
L L+++++ + + + + + + L + + +
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL-VLYVGVEDYGFDGDM 239
Query: 185 ENLDGALMGIH--GLSRLDLSHNKLRTISPDDFIG---LDSLKMLDISHNLLT-----TL 234
L L + + + + + F+ L L+ +DIS +LT L
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299
Query: 235 EETSKTFLPALEELFVSHNSLT 256
+ + L+ + + +N L+
Sbjct: 300 LDHVDK-IKHLKFINMKYNYLS 320
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 41.9 bits (98), Expect = 2e-04
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG--LDSLKMLDISHNLLTTL 234
L + L I L L+LS+N+L + I +LK+L++S N L +
Sbjct: 152 LNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE 211
Query: 235 EETSKTFLPALEELFVSHNSLTRLDKD 261
E K LEEL++ NSL +D
Sbjct: 212 RELDKIKGLKLEELWLDGNSLCDTFRD 238
Score = 39.6 bits (92), Expect = 0.001
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 88 RRDEFQNLHNLD-SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT--EFLLDDIRGLKR 144
R D N+D ++ ++ ++ + +L L LS+N+L + + ++
Sbjct: 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPN 197
Query: 145 LRTVDLSYNKINKFG 159
L+ ++LS N++
Sbjct: 198 LKILNLSGNELKSER 212
Score = 36.5 bits (84), Expect = 0.010
Identities = 30/151 (19%), Positives = 45/151 (29%), Gaps = 34/151 (22%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
L L R L L + + +L SL +NNR+ LD +
Sbjct: 132 LDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIE---ENIPELLSLNLSNNRLYRLDDM 188
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLY 125
Q NL ++L N++ S + GL KL L+
Sbjct: 189 ---------------------SSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226
Query: 126 LSHNQLTEFLLDD-------IRGLKRLRTVD 149
L N L + D +L +D
Sbjct: 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
Score = 36.1 bits (83), Expect = 0.013
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 173 NIFELKLQHNEIENLDG---ALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+ L L +N + LD + L L+LS N+L++ D I L+ L + N
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Query: 230 LLTTLEETSKTFLPALEELFVSHNSLTRLD 259
L T++ A+ E F L RLD
Sbjct: 231 SLCDTFRDQSTYISAIRERFP---KLLRLD 257
Score = 32.3 bits (73), Expect = 0.21
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 33/108 (30%)
Query: 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 63
+L L L+NNRL L+ + S +Q L L + N + S
Sbjct: 171 ELLSLNLSNNRLYRLDD--------------------MSSIVQKAPNLKILNLSGNELKS 210
Query: 64 LDGL--LRGLTKLQVFNMDFNQITMVRRDE----------FQNLHNLD 99
L ++GL KL+ +D N + RD+ F L LD
Sbjct: 211 ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 41.4 bits (96), Expect = 2e-04
Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 326 NNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQE 385
N G + QP ++ T T TT P + T T T T T T TT I
Sbjct: 156 YGNRIQSGYFVIQPGEINSAPIATATPTTKPTAFASTMPTVTL---TPTPTATTTTTIPT 212
Query: 386 EYTETITLE 394
T +LE
Sbjct: 213 AVPTTESLE 221
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 39.9 bits (93), Expect = 0.001
Identities = 36/248 (14%), Positives = 85/248 (34%), Gaps = 26/248 (10%)
Query: 1 GLTD--LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
G + L + LK L+ L + + + + L P ++ L SL +
Sbjct: 142 GFSTDGLAAIAATCRNLKELD-----LRESDVDDVSGHWLSHFP---DTYTSLVSLNISC 193
Query: 59 --NRIT--SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL-------QNNQ 107
+ ++ +L+ L+ L+ ++ Q L+ + + +
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253
Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
+ ++ +LSG +L L + + +L RL T++LSY + +
Sbjct: 254 YSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV----QSYDLVKL 309
Query: 168 VQGVTNIFELKLQHN-EIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI 226
+ + L + E L+ L L + ++ + P+ + L + +
Sbjct: 310 LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369
Query: 227 SHNLLTTL 234
L ++
Sbjct: 370 GCPKLESV 377
Score = 36.4 bits (84), Expect = 0.015
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 93 QNLHNLDSISLQNNQIT--SMNSSLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVD 149
++ +S+ + M+ LSG L L + + LL + L+ +R++
Sbjct: 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW 512
Query: 150 LSYNKINKFG 159
+S ++
Sbjct: 513 MSSCSVSFGA 522
Score = 35.6 bits (82), Expect = 0.033
Identities = 37/297 (12%), Positives = 95/297 (31%), Gaps = 37/297 (12%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQL--LVIEQNQLEALPSDIQLFSQLGSLYANN 58
L W ++++ L +++L +V+ + LE + + F L ++
Sbjct: 83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI---AKSFKNFKVLVLSS 139
Query: 59 -NRIT--SLDGLLRGLTKLQVFNMDFNQITMVRRDEF----QNLHNLDSISLQN--NQIT 109
+ L + L+ ++ + + V +L S+++ ++++
Sbjct: 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199
Query: 110 --SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQ 167
++ ++ L L L+ E L ++ +L + +
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG--YTAEVRPDVYSGL 257
Query: 168 VQGVTNIFELKLQHNEIENLDGALMGI----HGLSRLDLSHN---------------KLR 208
++ EL+ + + L + L+ L+LS+ KL+
Sbjct: 258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQ 317
Query: 209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGL 265
+ D+I L++L + L L + ++ L + L
Sbjct: 318 RLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL 374
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 39.3 bits (92), Expect = 0.002
Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 51/291 (17%)
Query: 2 LTDLNWLFLNNNRLKSLEGQ-----LGTLSK-LQLLVIEQNQL--EALPSDIQLFSQLGS 53
L+ L L L R+ ++ LG+ L + + QL L + + +F +
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 54 LYANNNRITSL------DGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNLHNLD 99
L N + D LL ++ + N +T ++
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT----AAGVAVLMEGLAGNTSVT 186
Query: 100 SISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDL 150
+SL + + + + L +L L +++N L R L + L
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246
Query: 151 SYNKINKFGTRN--EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR 208
+N+++ G + + +G + + + + L L
Sbjct: 247 YFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV--------SEYWSVILSEVQRNLN 298
Query: 209 TISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
+ L + D+ + TL +L + L
Sbjct: 299 SWDRARVQRHLELLLRDLEDSRGATLNPW------RKAQLLRVEGEVRALL 343
Score = 36.2 bits (84), Expect = 0.016
Identities = 31/196 (15%), Positives = 64/196 (32%), Gaps = 41/196 (20%)
Query: 127 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIEN 186
+ + L I+ L L K+ K G QV + + + H E +N
Sbjct: 10 HNRAVLAQLGCPIKNLDALENAQAIKKKLGKLG------RQVLPPSELLDHLFFHYEFQN 63
Query: 187 LDGALMGIHGLSRLDLSHNKLRTISPDDFIGL--------DSLKMLDISHNLLTTLEETS 238
+ + L +L+L+ + ++P + +L ++++ L
Sbjct: 64 QRFSAEVLSSLRQLNLAGVR---MTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGL 118
Query: 239 KTFLPAL---EELFVSHNSLTRLDKDFHGLPVLCKA-----------DLAHNNIKAINIQ 284
+T LP +L + NSL + L L++N + A +
Sbjct: 119 RTLLPVFLRARKLGLQLNSLG--PE---ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA 173
Query: 285 L---ALKTQCQIFGLN 297
+ L + L+
Sbjct: 174 VLMEGLAGNTSVTHLS 189
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 38.0 bits (88), Expect = 0.005
Identities = 43/272 (15%), Positives = 84/272 (30%), Gaps = 63/272 (23%)
Query: 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLL-VIEQNQLEALPS--------DIQLFSQLGSL 54
DL + L +L + L L+ VI LE L I+ + +
Sbjct: 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358
Query: 55 YANNNRIT--SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
++ L L +G +L+ + + IT N + S+
Sbjct: 359 EDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT-------------------NESLESIG 399
Query: 113 SSLSGLTKLAYLYLSH-NQLTEFLLDD-----IRGLKRLRTVDLSYNKINKFGTRNEGKN 166
+ L L + L ++T+ LD+ + G K+LR
Sbjct: 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR------------- 446
Query: 167 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GLDSLKMLD 225
G+T+ + + + + L + +F G +L+ L+
Sbjct: 447 -QGGLTD--------LGLSYI---GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494
Query: 226 ISHNLLTTLE-ETSKTFLPALEELFVSHNSLT 256
+ + + T LP+L L+V +
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase;
endo-galactosidase, glycosyl hydrolase, PSI, protein
structure initiative; 1.82A {Clostridium perfringens}
SCOP: b.29.1.2 b.42.2.3
Length = 420
Score = 36.9 bits (85), Expect = 0.011
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 319 IDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPA 361
ID +ET + + T+ T + P P
Sbjct: 169 IDILETFFSKKDTWRIAAYGWNDPNFQTSWTISEDKVPSGDPT 211
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 34.8 bits (80), Expect = 0.014
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+ L L+ N L + P L +L+ + N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 34.8 bits (80), Expect = 0.015
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 97 NLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
+ + L N +T++ L L L +L N + L+
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD--CRLVPLRA 78
Score = 32.9 bits (75), Expect = 0.062
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
+ N +T + L L + L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 32.9 bits (75), Expect = 0.065
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 3 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQL 38
D L L N L +L G L L L+ + N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 30.5 bits (69), Expect = 0.42
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 37 QLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQ 83
+LP+ L N +T+L GLL L L+ ++ N
Sbjct: 21 TWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 30.5 bits (69), Expect = 0.43
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
L ++ N LT L LPAL + N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.8 bits (67), Expect = 0.82
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L+ N LT + L LRT L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.017
Identities = 6/30 (20%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 292 QIFGLNSTLRIYLEGN-PVLCDDSMRAVID 320
+ L ++L++Y + + P L +++A ++
Sbjct: 21 ALKKLQASLKLYADDSAPAL---AIKATME 47
Score = 29.1 bits (64), Expect = 1.5
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 34 EQNQLEALPSDIQLFS 49
E+ L+ L + ++L++
Sbjct: 18 EKQALKKLQASLKLYA 33
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 35.7 bits (82), Expect = 0.025
Identities = 11/68 (16%), Positives = 17/68 (25%), Gaps = 2/68 (2%)
Query: 343 ETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETN 402
+ T P APT + + PT P T+ E
Sbjct: 17 TQAANGGPATPAPPALGAAPTGDPK--PKKNKKPKNPTPPRPAGDNATVAAGHATLREHL 74
Query: 403 NQIPVQDN 410
I ++
Sbjct: 75 RDIKAENT 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 35.6 bits (82), Expect = 0.026
Identities = 47/259 (18%), Positives = 96/259 (37%), Gaps = 23/259 (8%)
Query: 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLYANNNRIT 62
W L+ G L ++ + + FS ++ + +N+ I
Sbjct: 47 SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106
Query: 63 --SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN-NQIT--SMNSSLSG 117
+L G+L +KLQ +++ +++ + NL ++L + + ++ + LS
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166
Query: 118 LTKLAYLYLSH-NQLTEFLLDDI--RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
++L L LS TE + + + ++LS K +++ V+ N+
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS--GYRKNLQKSDLSTLVRRCPNL 224
Query: 175 FELKLQHNEIENLDG----ALMGIHGLSRLDLSHNKLRTISPDDFIGLD---SLKMLDIS 227
L L + L ++ L L LS I P+ + L +LK L +
Sbjct: 225 VHLDLSDS--VMLKNDCFQEFFQLNYLQHLSLSRCYD--IIPETLLELGEIPTLKTLQVF 280
Query: 228 HNLLTTLEETSKTFLPALE 246
+ + K LP L+
Sbjct: 281 GIVPDGTLQLLKEALPHLQ 299
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 33.6 bits (77), Expect = 0.11
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 331 IHGETIC-QPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPI 383
+G C + S+ TS TTT+T T P A T + T P I
Sbjct: 353 AYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTI 406
>3g4n_A Aerolysin; toxin, cytolytic toxin, pore-forming toxin, membrane,
secret; 2.10A {Aeromonas hydrophila} PDB: 3g4o_A 1pre_A
1z52_A 3c0n_A 3c0m_A 3c0o_A*
Length = 470
Score = 32.1 bits (72), Expect = 0.34
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 311 CDDSMRAVIDAME-TINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQR 369
C D + ++ ++ HG+ S+ T TP T R
Sbjct: 164 CGDKTAIKVSNFAYNLDPDSFKHGDVT---QSDRQLVKTVVGWAVNDSDTPQSGYDVTLR 220
Query: 370 -STTSTTTQTPTTPIQEEYTETITLELPQPVET 401
T + ++T T + E+ T + P ET
Sbjct: 221 YDTATNWSKTNTYGLSEKVTTKNKFKWPLVGET 253
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A
{Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A*
3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A*
4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A*
1gg9_A* 1ggf_A* ...
Length = 753
Score = 32.0 bits (73), Expect = 0.36
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 326 NNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQE 385
N H + + + + P PT Q + + T +
Sbjct: 6 EKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTPPGAQPTAPGSLKAPDTRNEKL 65
Query: 386 EYTETITLELPQPVETNNQ-IPVQDN 410
E + T NQ + + D+
Sbjct: 66 NSLEDVRKGSENYALTTNQGVRIADD 91
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor
complex; HET: DFU; 1.60A {Bifidobacterium longum subsp}
PDB: 3mo4_A* 3uet_A*
Length = 478
Score = 31.9 bits (72), Expect = 0.37
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 16/86 (18%)
Query: 317 AVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTT 376
+ +++ + E + + T + A T
Sbjct: 335 PDVQSLKGLGRRVSEFREAL----------ASVRCEARTSSASAAAAHLVDGNRDTFWRP 384
Query: 377 QTPTTPIQEEYTETITLELPQPVETN 402
++ ITL LPQP N
Sbjct: 385 D------ADDAAPAITLTLPQPTTIN 404
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding,
lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB:
2ist_A 1qyu_A 1prz_A
Length = 325
Score = 31.7 bits (73), Expect = 0.39
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 15/55 (27%)
Query: 257 RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYL---EGNP 308
RLDKD GL V+ K A + L + R Y G+
Sbjct: 136 RLDKDTTGLMVVAKTVPAQTRLVE---SLQRRE---------ITREYEAVAIGHM 178
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase;
1.95A {Rhodothermus marinus}
Length = 251
Score = 31.5 bits (72), Expect = 0.43
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 319 IDAMETINNN-TKIHGETICQPDSNETSTTTTTTTTTTP 356
ID E + N +HG T+ N T + P
Sbjct: 124 IDIAEHVGFNPDVVHG-TVHTKAYNHLLGTQRGGSIRVP 161
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16,
laminari endo-1,3-beta-glucanase, hydrolase; 1.65A
{Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A
4dfs_A
Length = 272
Score = 31.2 bits (71), Expect = 0.49
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 319 IDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPA 361
ID ME + ++T+ T P + ++ P +
Sbjct: 133 IDIMEMLGHDTRTVYGTAHGPGYSGGASIGVAYHLPEGVPDFS 175
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG
MAN BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Length = 470
Score = 31.4 bits (70), Expect = 0.63
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 336 ICQPDSNETSTTTTTTTTTTPEP-TPAPTSTTTQRSTTSTTTQTPTTP 382
I + +N T+TT + PE T +PT TT + +TTT P++
Sbjct: 405 ITRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSST 452
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces
sioyaensis}
Length = 280
Score = 30.5 bits (69), Expect = 0.88
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 319 IDAMETINNNTKIHGETIC--QPDSNETSTTTTTTTTTTPEPTPA 361
+D ME + K C P T+ +T P T
Sbjct: 143 LDIMENVQGLNKTWATMHCGTSPGGPCNETSGIGNSTACPNTTCQ 187
>2ex3_B Protein GP3, DNA terminal protein; DNA polymerase: protein primer
complex, transferase-replicat complex; HET: DNA; 3.00A
{Bacillus phage PHI29} SCOP: a.263.1.1
Length = 230
Score = 29.8 bits (66), Expect = 1.3
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 137 DDIRGLKRLRTVDL----SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM 192
+ G+ R D SY+++ E + Q ++LQ N I++++G+
Sbjct: 101 AHVTGINRPHDFDFSKVRSYSRLRTLEESMEMRTDPQYYEKKM-IQLQLNFIKSVEGSF- 158
Query: 193 GIHGLSRLDLSHNKLRTISPDDF 215
+ D +L+ I PDDF
Sbjct: 159 --NSFDAADELIEELKKIPPDDF 179
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA
complex; HET: FOU; 2.05A {Escherichia coli}
Length = 217
Score = 29.8 bits (68), Expect = 1.4
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 257 RLDKDFHGLPVLCKADLAHNNIKAINIQLALKT 289
RLD G+ V+ A +K Q +
Sbjct: 60 RLDMATSGVIVVALTKAAERELKR---QFRERE 89
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 29.9 bits (66), Expect = 1.5
Identities = 12/68 (17%), Positives = 22/68 (32%)
Query: 335 TICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLE 394
T C + T T P+ +S+T+ T+ + E + T +
Sbjct: 149 TDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHEVPSSTYVPK 208
Query: 395 LPQPVETN 402
E+N
Sbjct: 209 GMNSTESN 216
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase,
thermostable protein,; 2.16A {Pyrococcus furiosus}
Length = 264
Score = 29.3 bits (66), Expect = 2.3
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 319 IDAMETINNN-TKIHGETICQPDSNETSTTTTTTTTTTPEPTPA 361
ID ME + + IHG T+ P + + T T P
Sbjct: 138 IDIMEFLGHEPRTIHG-TVHGPGYSGSKGITRAYTLPEGVPDFT 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 28.7 bits (64), Expect = 2.7
Identities = 18/137 (13%), Positives = 41/137 (29%), Gaps = 31/137 (22%)
Query: 120 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
K+ + + + + D + GL+ + + L + +
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH---------------YIEDGC---- 102
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI----GLDSLKMLDISH-NLLTTL 234
+E L + +++ T D I +LK L +S +
Sbjct: 103 ----LERLSQLENLQKSMLEMEIISCGNVT---DKGIIALHHFRNLKYLFLSDLPGVKEK 155
Query: 235 EETSKTFLPALEELFVS 251
E+ + F +L L +
Sbjct: 156 EKIVQAFKTSLPSLELK 172
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine
syntase, RNA binding, lyase; 2.00A {Escherichia coli}
SCOP: d.265.1.3 PDB: 1xpi_A
Length = 228
Score = 28.6 bits (65), Expect = 3.3
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 12/48 (25%)
Query: 257 RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYL 304
RLD+D G+ ++ K A ++ QL K + YL
Sbjct: 51 RLDRDTSGVLLVAKKRSALRSLHE---QLREKG---------MQKDYL 86
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 29.0 bits (65), Expect = 3.3
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 46 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 105
++ S+L + +++ LD +LR L V I + L + L
Sbjct: 67 EIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMV-GKYLVP 125
Query: 106 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 138
++ +S + L E ++D+
Sbjct: 126 DESRGYLASFTTFLCYPALLQVWMNFKEAVVDE 158
>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase;
HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP:
b.47.1.2 PDB: 1fiz_A*
Length = 290
Score = 28.9 bits (65), Expect = 3.4
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 344 TSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETIT 392
S +T PT +P ST ++++ + + P + + IT
Sbjct: 245 ASKIGSTAVHMIQLPTASPASTPGAQASSGSVQPSVRPP---WFFQQIT 290
>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral
protein, hydrolase; 1.70A {Tobacco vein mottling virus}
Length = 241
Score = 28.4 bits (63), Expect = 3.5
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFI 216
DG ++GIH L+ N P+ F+
Sbjct: 160 DGNILGIHSLTHTTNGSNYFVEF-PEKFV 187
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics,
PSI-biology; HET: PG4 211; 2.02A {Mycobacterium
smegmatis}
Length = 269
Score = 28.6 bits (64), Expect = 3.5
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 319 IDAMETINNNTKIHGETICQPDSNETSTTTTTTTTT 354
+D +E N + T+ + T
Sbjct: 154 LDIIEWYGNGSWPSATTVHAKSNGGEWKTHNIAVDN 189
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial
endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis
SP} PDB: 3atg_A
Length = 245
Score = 28.4 bits (64), Expect = 4.1
Identities = 8/39 (20%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 319 IDAMETINNN-TKIHGETICQPDSNETSTTTTTTTTTTP 356
ID ME I +HG T +
Sbjct: 124 IDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGW 162
>3pnu_A Dihydroorotase; TIM barrel, zinc binding, hydrolase, structu
genomics, center for structural genomics of infectious
DISE csgid; HET: KCX; 2.40A {Campylobacter jejuni subsp}
Length = 359
Score = 28.5 bits (63), Expect = 4.3
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 237 TSKTFLPALEELFVSHNSLTRLDK-------DFHGLPV 267
++ LP L ELF ++S L K + L
Sbjct: 281 SAPVILPVLAELFKQNSSEENLQKFLSDNTCKIYDLKF 318
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 28.8 bits (63), Expect = 4.6
Identities = 8/82 (9%), Positives = 16/82 (19%)
Query: 338 QPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQ 397
E + T + E P T + + + TE
Sbjct: 92 SAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVP 151
Query: 398 PVETNNQIPVQDNLEKEKQPDH 419
P + ++
Sbjct: 152 KNTEKTLKPKEIKFNSWEELLK 173
Score = 28.0 bits (61), Expect = 7.2
Identities = 7/67 (10%), Positives = 15/67 (22%), Gaps = 2/67 (2%)
Query: 351 TTTTTPEPTPAPTSTTTQRSTTSTTTQTPTTPIQEEYTETITLELPQPVETNNQIPVQDN 410
E T P ++ S ++ T ++ E +E +
Sbjct: 16 NLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARE--NKLEKAEGVATASE 73
Query: 411 LEKEKQP 417
Sbjct: 74 TASPASN 80
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 28.2 bits (62), Expect = 5.5
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 339 PDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQ 377
+ T T P P P + T + T
Sbjct: 692 TKIDCVQVATKGAATPKPVPEPEKQTDHTVKGTKHHHHH 730
>2z26_A Dihydroorotase, dhoase; TIM barrel, hydrolase; HET: KCX DOR NCD;
1.29A {Escherichia coli} PDB: 2z24_A* 2z25_A* 2eg6_A*
1xge_A* 2eg7_A* 2eg8_A* 2z27_A* 2e25_A* 2z28_A* 2z29_A*
3mjm_A* 2z2a_A* 1j79_A* 2z2b_A* 3ihn_A* 3jze_A*
Length = 347
Score = 27.7 bits (61), Expect = 6.7
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 237 TSKTFLPALEELFVSHNSLTRLDK-------DFHGLPV 267
+ T L + +F N+L + F+GLPV
Sbjct: 270 NAPTALGSYATVFEEMNALQHFEAFCSVNGPQFYGLPV 307
>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta
barrel, chymotrypsin-type cystein protease, enzyme-
peptide complex; 1.80A {Tobacco etch virus} SCOP:
b.47.1.3 PDB: 1lvb_A 1q31_A
Length = 229
Score = 27.6 bits (61), Expect = 7.9
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 188 DGALMGIHGLSRLDLSHNKLRTISPDDFI 216
DG ++GIH S ++N ++ P +F+
Sbjct: 168 DGFIVGIHSASNFTNTNNYFTSV-PKNFM 195
>2c4x_A Endoglucanase, ctcel9D-CEL44A; cellulase ctcel9D-CEL44A, PKD
domain, CBM44, carbohydrate BI module, beta-sandwich
proteins, cellulosome; 2.0A {Clostridium thermocellum}
PDB: 2c26_A
Length = 260
Score = 27.3 bits (60), Expect = 9.2
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 340 DSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTST---------TTQTPTTPIQEEYTET 390
D TT T P+ AP + T +T T ++ +
Sbjct: 155 DGGTIVVPGTTMTFRIWIPSGAPIAAIQPYIMPHTPDWSEVLWNSTWKGYTMVKTDDWNE 214
Query: 391 ITLELPQPVET 401
ITL LP+ V+
Sbjct: 215 ITLTLPEDVDP 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,781,028
Number of extensions: 334933
Number of successful extensions: 6154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1208
Number of HSP's successfully gapped: 545
Length of query: 419
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 323
Effective length of database: 4,021,377
Effective search space: 1298904771
Effective search space used: 1298904771
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (26.4 bits)