RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4257
(419 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 88.6 bits (218), Expect = 3e-20
Identities = 64/279 (22%), Positives = 112/279 (40%), Gaps = 11/279 (3%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
LE +P D+ L NN+IT + DG + L L + N+I+ + F
Sbjct: 20 LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
L L+ + L NQ+ + + + L + N++T+ GL ++ V+L N
Sbjct: 78 LVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
+ G N QG+ + +++ I + L L+ L L NK+ +
Sbjct: 136 LKSSGIEN---GAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAAS 190
Query: 215 FIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLA 274
GL++L L +S N ++ ++ S P L EL +++N L ++ + L
Sbjct: 191 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 250
Query: 275 HNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDD 313
+NNI AI S + L NPV +
Sbjct: 251 NNNISAIG-SNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288
Score = 81.6 bits (200), Expect = 6e-18
Identities = 52/251 (20%), Positives = 95/251 (37%), Gaps = 19/251 (7%)
Query: 1 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
L +L+ L L NN++ + G L KL+ L + +NQL+ LP + Q L + N
Sbjct: 53 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHEN 110
Query: 60 RITSLDGLLRGLTKLQVF---NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 116
IT + + + + + + + FQ + L I + + IT++ L
Sbjct: 111 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL- 169
Query: 117 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFE 176
L L+L N++T+ ++GL L + LS+N I+ + ++
Sbjct: 170 -PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIG------LDSLKMLDISHNL 230
KL + + L +N + I +DF S + + N
Sbjct: 229 NKLVKVPGGL-----ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283
Query: 231 LTTLEETSKTF 241
+ E TF
Sbjct: 284 VQYWEIQPSTF 294
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 69.6 bits (169), Expect = 1e-13
Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 18/201 (8%)
Query: 53 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
SL A NN+I+ + L LT L +++ NQ+ + +L NL + L NNQI+++
Sbjct: 201 SLIATNNQISDITPL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL- 256
Query: 113 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVT 172
+ LSGLTKL L L NQ++ + + GL L ++L+ N++ + + +
Sbjct: 257 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDI-------SPISNLK 307
Query: 173 NIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
N+ L L N I ++ + + L RL ++NK+ L ++ L HN ++
Sbjct: 308 NLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQIS 364
Query: 233 TLEETSKTFLPALEELFVSHN 253
L + L + +L ++
Sbjct: 365 DLTPLAN--LTRITQLGLNDQ 383
Score = 68.1 bits (165), Expect = 3e-13
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
LT+L L L NN++ +L L L+KL L + NQ+ + L + N
Sbjct: 239 SLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 120
L L + FN I+ + +L L + NN+++ + SSL+ LT
Sbjct: 298 EDISPI--SNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDV-SSLANLTN 352
Query: 121 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
+ +L HNQ+++ L + L R+ + L+
Sbjct: 353 INWLSAGHNQISD--LTPLANLTRITQLGLNDQ 383
Score = 57.3 bits (137), Expect = 1e-09
Identities = 65/342 (19%), Positives = 119/342 (34%), Gaps = 80/342 (23%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L + L + +KS++G + L+ L + NQL + L L
Sbjct: 43 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNN 97
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----------- 110
+ + + + + D +NL NL+ + L +N I+
Sbjct: 98 NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157
Query: 111 -------------------------------MNSSLSGLTKLAYLYLSHNQLTEFLLDDI 139
S L+ LT L L ++NQ+++ + +
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPL 215
Query: 140 RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSR 199
L L + L+ N++ GT + +TN+ +L L +N+I NL L G+ L+
Sbjct: 216 GILTNLDELSLNGNQLKDIGT-------LASLTNLTDLDLANNQISNL-APLSGLTKLTE 267
Query: 200 LDLSHNKLRTISP--------------------DDFIGLDSLKMLDISHNLLTTLEETSK 239
L L N++ ISP L +L L + N ++ + S
Sbjct: 268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
L L+ LF ++N ++ + L + HN I +
Sbjct: 328 --LTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDL 366
Score = 46.1 bits (108), Expect = 4e-06
Identities = 53/267 (19%), Positives = 97/267 (36%), Gaps = 19/267 (7%)
Query: 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
L++ V+ + + S L Q+ +L A+ I S+DG + L L N NQ+
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL 78
Query: 85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
T + +NL L I + NNQI + + ++ L ++ L R
Sbjct: 79 TDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALM----------GI 194
L + + I+ + G L + +
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196
Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS 254
L L ++N++ I+P + +L L ++ N L + + L L +L +++N
Sbjct: 197 TNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLAS--LTNLTDLDLANNQ 252
Query: 255 LTRLDKDFHGLPVLCKADLAHNNIKAI 281
++ L GL L + L N I I
Sbjct: 253 ISNLA-PLSGLTKLTELKLGANQISNI 278
Score = 36.5 bits (83), Expect = 0.005
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L +T S + L ++ L + +D + L L ++ S N
Sbjct: 20 ALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76
Query: 154 KI 155
++
Sbjct: 77 QL 78
Score = 35.0 bits (79), Expect = 0.015
Identities = 15/89 (16%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 141 GLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL 200
L L + ++ + + + L+ I+++DG + ++ L+++
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQTD-------LDQVTTLQADRLGIKSIDG-VEYLNNLTQI 71
Query: 201 DLSHNKLRTISPDDFIGLDSLKMLDISHN 229
+ S+N+L I+P L L + +++N
Sbjct: 72 NFSNNQLTDITP--LKNLTKLVDILMNNN 98
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 65.9 bits (159), Expect = 8e-13
Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 18/275 (6%)
Query: 91 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 150
E + + ++ +T++ L L+LS N L F L + RL ++L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI 210
++ K + + L L HN++++L + L+ LD+S N+L ++
Sbjct: 63 DRAELTKL-------QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 211 SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLC 269
GL L+ L + N L TL T P LE+L +++N+LT L +GL L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 270 KADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAMETINNNT 329
L N++ I FG + +L GNP LC+ + ++ N
Sbjct: 176 TLLLQENSLYTI--------PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENV 227
Query: 330 KIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTS 364
+ + + + + P
Sbjct: 228 YVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPGK 262
Score = 52.0 bits (123), Expect = 3e-08
Identities = 50/195 (25%), Positives = 74/195 (37%), Gaps = 10/195 (5%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
L ALP D+ L+ + N + + L T+L N+D ++T
Sbjct: 20 RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGT 75
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + L N+
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE 135
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
+ +N E G L G+ L L L N L TI P
Sbjct: 136 LKTLPPGLLTPTP----KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKG 190
Query: 215 FIGLDSLKMLDISHN 229
F G L + N
Sbjct: 191 FFGSHLLPFAFLHGN 205
Score = 46.2 bits (108), Expect = 2e-06
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 13/201 (6%)
Query: 57 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL 115
+ +T+L L + T L ++ N + L ++L ++T +
Sbjct: 18 DKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD- 73
Query: 116 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIF 175
L + L L+ ++ + ++G+ +
Sbjct: 74 ------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127
Query: 176 ELKLQHNEIENLDGALMGIHGLSRL-DLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTL 234
EL L+ NE++ L L+ L++N L + GL++L L + N L T+
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187
Query: 235 EETSKTFLPALEELFVSHNSL 255
+ L F+ N
Sbjct: 188 PKGF-FGSHLLPFAFLHGNPW 207
Score = 44.7 bits (104), Expect = 1e-05
Identities = 20/77 (25%), Positives = 32/77 (41%)
Query: 55 YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS 114
N T GLL KL+ ++ N +T + L NLD++ LQ N + ++
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG 190
Query: 115 LSGLTKLAYLYLSHNQL 131
G L + +L N
Sbjct: 191 FFGSHLLPFAFLHGNPW 207
Score = 31.2 bits (69), Expect = 0.18
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 7 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 59
NNN + G L L L L++++N L +P L + + N
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 57.9 bits (138), Expect = 5e-10
Identities = 42/249 (16%), Positives = 87/249 (34%), Gaps = 25/249 (10%)
Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ S + ++ + ++ ++L N+++ R + L + L N + +
Sbjct: 15 TTSCPQQGLQAVPVGIPAASQ--RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLD 219
+ ++ + + L L L L L+ + P F GL
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGL---GRLHTLHLDRCGLQELGPGLFRGLA 129
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNI 278
+L+ L + N L L + + L L LF+ N ++ + + F GL L + L N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 279 KAI------------------NIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVID 320
+ N AL + L + + L NP +CD R +
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNPWVCDCRARPLWA 248
Query: 321 AMETINNNT 329
++ ++
Sbjct: 249 WLQKFRGSS 257
Score = 51.3 bits (121), Expect = 6e-08
Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 12/236 (5%)
Query: 3 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
+FL+ NR+ + L +L + N L + + L ++
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 62 TS---LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 117
GL +L ++D + + F+ L L + LQ+N + ++ + +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
L L +L+L N+++ RGL L + L N++ +F
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF-- 209
Query: 178 KLQHNEIENLDGALMG-IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT 232
N + L + + L L L+ N L+ S + +
Sbjct: 210 ---ANNLSALPTEALAPLRALQYLRLNDNPWV-CDCRARPLWAWLQKFRGSSSEVP 261
Score = 44.4 bits (103), Expect = 1e-05
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 9/154 (5%)
Query: 5 LNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNN 59
L +L+L +N L++L + L L L + N++ ++P F L SL N
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNR 188
Query: 60 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 119
R L +L + N ++ + + L L + L +N +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248
Query: 120 KLAYLYLSHNQLTEFLLDDIRG--LKRLRTVDLS 151
L S +++ L + G LKRL DL
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
Score = 27.1 bits (58), Expect = 4.7
Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNS 254
L+ + P + + + + N ++ + S L L++ N
Sbjct: 11 EPKVTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV 67
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 51.3 bits (122), Expect = 1e-08
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 123 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
L+L+H LT L + L + +DLS+N++ + + + L+ N
Sbjct: 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL------PPALAALRCLEVLQASDN 53
Query: 183 EIENLDGALMGIHGLSRLDLSHNKLRTIS-PDDFIGLDSLKMLDISHNLLTTLE---ETS 238
+EN+DG L L +N+L+ + + L +L++ N L E E
Sbjct: 54 ALENVDGVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112
Query: 239 KTFLPALEELF 249
LP++ +
Sbjct: 113 AEMLPSVSSIL 123
Score = 45.5 bits (107), Expect = 9e-07
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 29 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 88
++L + L L ++ + L ++NR+ +L L L L+V N + V
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV- 58
Query: 89 RDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTE 133
D NL L + L NN++ L +L L L N L +
Sbjct: 59 -DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
Score = 39.7 bits (92), Expect = 1e-04
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
L + L L++NRL++L L L L++L N LE + +L L NNR
Sbjct: 18 QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN-LPRLQELLLCNNR 76
Query: 61 ITSLDGL--LRGLTKLQVFNMDFNQITM---VRRDEFQNLHNLDSI 101
+ + L +L + N+ N + ++ + L ++ SI
Sbjct: 77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 39.3 bits (91), Expect = 1e-04
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 8 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 67
L L + L L L L + L + N+L ALP + L L A++N + ++DG+
Sbjct: 3 LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 68 LRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 121
+LQ + N++ + L ++LQ N + L ++
Sbjct: 62 ANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 34.3 bits (78), Expect = 0.006
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
++L ++H LT L + L + L +SHN L L L L + N ++ +
Sbjct: 1 RVLHLAHKDLTVLCHLEQ--LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 52.1 bits (123), Expect = 5e-08
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L ++NN+L L L +L N L +P L L L+ N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLIA---SFNHLAEVPE---LPQNLKQLHVEYNPL 336
Query: 62 TSLDGLLRGLTKLQVFN 78
+ + L++ +
Sbjct: 337 REFPDIPESVEDLRMNS 353
Score = 50.2 bits (118), Expect = 2e-07
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 77 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
N + R +L+ +++ NN++ + + L + L S N L E
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEV-- 319
Query: 137 DDIRGLKRLRTVDLSYNKINKF 158
+ L+ + + YN + +F
Sbjct: 320 --PELPQNLKQLHVEYNPLREF 339
Score = 49.8 bits (117), Expect = 3e-07
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 192 MGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVS 251
L L++S+NKL + L+ L S N L + E L++L V
Sbjct: 281 DLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVE 332
Query: 252 HNSLTRLDKDFHGLPVL 268
+N L + L
Sbjct: 333 YNPLREFPDIPESVEDL 349
Score = 49.4 bits (116), Expect = 4e-07
Identities = 45/290 (15%), Positives = 84/290 (28%), Gaps = 17/290 (5%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L + N L L +L L + L LP ++ + +
Sbjct: 57 PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 116
Query: 62 TSL--------DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 113
+ D +++F + +E L NL ++ S+
Sbjct: 117 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK 176
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLSYNKINKFGTRNEGKNQVQGV 171
L + +N L E +L + + + +
Sbjct: 177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 236
Query: 172 TNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLL 231
T++ EL ++ + G+ L N SL+ L++S+N L
Sbjct: 237 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 296
Query: 232 TTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
L P LE L S N L + + L L + +N ++
Sbjct: 297 IELPA----LPPRLERLIASFNHLAEVPELPQNLKQL---HVEYNPLREF 339
Score = 47.5 bits (111), Expect = 2e-06
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 162 NEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSL 221
NE ++ ++ EL + +N++ L L RL S N L + +L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL----PQNL 326
Query: 222 KMLDISHNLLTTLEETSKTFLPALEELFVS 251
K L + +N L + ++E+L ++
Sbjct: 327 KQLHVEYNPLREFPD----IPESVEDLRMN 352
Score = 46.4 bits (108), Expect = 3e-06
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 48 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 107
L L +NN++ L L L +L FN + V + NL + ++ N
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP----ELPQNLKQLHVEYNP 335
Query: 108 ITSMNSSLSGLTKL 121
+ + L
Sbjct: 336 LREFPDIPESVEDL 349
Score = 44.4 bits (103), Expect = 1e-05
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 6 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 65
L+ N + L+ L + N+L LP+ L +L L A+ N + +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVP 320
Query: 66 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 98
L + L +L ++++N + D +++ +L
Sbjct: 321 ELPQNLKQL---HVEYNPLREF-PDIPESVEDL 349
Score = 41.7 bits (96), Expect = 1e-04
Identities = 54/293 (18%), Positives = 90/293 (30%), Gaps = 24/293 (8%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 60
+L LNN L SL L L N L LP L L SL +NN
Sbjct: 39 QAHELE---LNNLGLSSLPELPPHLESLVA---SCNSLTELPE---LPQSLKSLLVDNNN 89
Query: 61 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT- 119
+ +L L L L V N ++ ++ F + ++D+ SL+ +
Sbjct: 90 LKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149
Query: 120 -----KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNI 174
L + ++ L L S N + +T I
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209
Query: 175 FELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDI------SH 228
+ + +L +L ++ +L + + L
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269
Query: 229 NLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAI 281
N + + P+LEEL VS+N L L L L + N++ +
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEV 319
Score = 40.2 bits (92), Expect = 3e-04
Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
L L + N L + L +L + E N L P + + L N+
Sbjct: 302 LPPRLERLIASFNHLAEVPELPQNLKQLHV---EYNPLREFPD---IPESVEDLRMNS 353
Score = 40.2 bits (92), Expect = 3e-04
Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 37/147 (25%)
Query: 77 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
+ + ++ N + S L L +S+N+L E
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-- 299
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG 196
RL + S+N + + EL
Sbjct: 300 --PALPPRLERLIASFNHL----------------AEVPEL----------------PQN 325
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKM 223
L +L + +N LR PD ++ L+M
Sbjct: 326 LKQLHVEYNPLREF-PDIPESVEDLRM 351
Score = 37.5 bits (85), Expect = 0.002
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIK 279
L++++ L++L E P LE L S NSLT L + L + +NN+K
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQS---LKSLLVDNNNLK 91
Query: 280 AIN 282
A++
Sbjct: 92 ALS 94
Score = 31.7 bits (70), Expect = 0.17
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 47 LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 106
L Q L NN ++SL L L L N +T + + +L S+ + NN
Sbjct: 36 LDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELP----ELPQSLKSLLVDNN 88
Query: 107 QITSMNSSLSGL 118
+ +++ L
Sbjct: 89 NLKALSDLPPLL 100
Score = 30.9 bits (68), Expect = 0.31
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 26 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
+ L + L +LP L SL A+ N +T L L L+ +D N +
Sbjct: 38 RQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL 90
Score = 28.3 bits (61), Expect = 1.9
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 65 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 124
D L R +L++ N+ + + + +L +L N +T + L L
Sbjct: 34 DCLDRQAHELELNNLGLSSLP----ELPPHLESLV---ASCNSLTELPELPQSLK---SL 83
Query: 125 YLSHNQLTEF 134
+ +N L
Sbjct: 84 LVDNNNLKAL 93
Score = 28.3 bits (61), Expect = 2.0
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 119 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 158
+ L L++ L+ L ++ L ++ S N + +
Sbjct: 38 RQAHELELNNLGLSS--LPEL--PPHLESLVASCNSLTEL 73
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 47.6 bits (112), Expect = 4e-07
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 2/138 (1%)
Query: 88 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
+ ++ N + L+ +I + + + L + + S N++ LD L+RL+T
Sbjct: 10 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67
Query: 148 VDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKL 207
+ ++ N+I + G + + L + +L + L L
Sbjct: 68 LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127
Query: 208 RTISPDDFIGLDSLKMLD 225
+ + +++LD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145
Score = 36.8 bits (84), Expect = 0.001
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
KL IE LDL K+ I + LD +D S N + L+
Sbjct: 2 KLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59
Query: 238 SK 239
Sbjct: 60 PL 61
Score = 36.5 bits (83), Expect = 0.002
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 6/136 (4%)
Query: 21 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD 80
Q + + L + ++ + + Q ++ ++N I LDG L +L+ ++
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVN 71
Query: 81 FNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSH---NQLTEFL 135
N+I + Q L +L + L NN + L+ L L YL + +
Sbjct: 72 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR 131
Query: 136 LDDIRGLKRLRTVDLS 151
L I + ++R +D
Sbjct: 132 LYVIYKVPQVRVLDFQ 147
Score = 35.3 bits (80), Expect = 0.006
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 33 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 92
+ +E + L +I ++ L L + + N+I + D F
Sbjct: 3 LTAELIEQAAQYTNA-VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGF 59
Query: 93 QNLHNLDSISLQNNQITSM 111
L L ++ + NN+I +
Sbjct: 60 PLLRRLKTLLVNNNRICRI 78
Score = 32.6 bits (73), Expect = 0.036
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 5/128 (3%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L L ++ +E TL + + N++ L L L NN
Sbjct: 17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC 76
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSM----NSSLS 116
+GL + L L + N + + D +L +L + + N +T+ +
Sbjct: 77 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIY 136
Query: 117 GLTKLAYL 124
+ ++ L
Sbjct: 137 KVPQVRVL 144
Score = 31.1 bits (69), Expect = 0.12
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 226 ISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAHNNIKAINIQL 285
++ L+ + T EL + + ++ L D + N I+ ++
Sbjct: 3 LTAELI--EQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFP 60
Query: 286 ALKTQCQIF 294
L+ +
Sbjct: 61 LLRRLKTLL 69
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 48.8 bits (114), Expect = 7e-07
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 97 NLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTE----FLLDDIRGLKRLRTVDL 150
++ S+ +Q +++ L L + + L LTE + +R L ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 151 SYNKINKFGTRNEGKNQVQGVTNIFELKLQHN 182
N++ G + I +L LQ+
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 45.4 bits (105), Expect = 9e-06
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 111 MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKN 166
+ L L+L+ ++ L + LR +DLS N + G ++
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420
Query: 167 QVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS 211
Q + +L L L L+ LR IS
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEE-----MEDRLQALEKDKPSLRVIS 460
Score = 44.6 bits (103), Expect = 2e-05
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 74 LQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLS 127
+Q ++ +++ R E L + L + +T ++S+L LA L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 128 HNQLTEFLLDDI-RGLK----RLRTVDLSYN 153
N+L + + + +GL+ +++ + L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 40.7 bits (93), Expect = 3e-04
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 92 FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLK-- 143
Q L + L + ++ S+ ++L L L LS+N L + + + ++
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 144 --RLRTVDLSYNKINK 157
L + L ++
Sbjct: 425 GCLLEQLVLYDIYWSE 440
Score = 37.6 bits (85), Expect = 0.002
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 173 NIFELKLQHNEI--ENLDGALMGIHGLSRLDLSHNKLRTISPDDFI----GLDSLKMLDI 226
+I L +Q E+ L + + L L D +L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 227 SHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
N L + L L+ + +L
Sbjct: 63 RSNELG--DVGVHCVLQGLQT---PSCKIQKLS 90
Score = 37.3 bits (84), Expect = 0.003
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 30/115 (26%)
Query: 121 LAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
+ L + +L++ ++ L++ + V L + +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR-------------------- 43
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKL-----RTISPDDFIGLDSLKMLDISHN 229
+++ AL L+ L+L N+L + ++ L + +
Sbjct: 44 ----CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 35.0 bits (78), Expect = 0.018
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 184 IENLDGALMGIHGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLDISHNLLT-----TL 234
E G L L L+ + S + SL+ LD+S+N L L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417
Query: 235 EETSKTFLPALEELFVSHNSLT 256
E+ + LE+L + +
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWS 439
Score = 33.4 bits (74), Expect = 0.054
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 23/110 (20%)
Query: 42 PSDIQLFSQLGSLYANNNRIT-----SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
Q S L L+ + ++ SL L L+ ++ N + +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-- 419
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 146
S++ L L L +E + D ++ L++ +
Sbjct: 420 -----SVRQPG-----------CLLEQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 31.1 bits (68), Expect = 0.23
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 28 LQLLVIEQNQL--EALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGLTKLQVFNMD 80
+Q L I+ +L + L Q + ++ +T + LR L N+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 81 FNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
N++ V S +Q + +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 30.7 bits (67), Expect = 0.40
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 4 DLNWLFLNNNRLKSLEGQLGTLSKLQL--LVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
D+ L++ R L L ++L + + + + + S +++ L L +N +
Sbjct: 8 DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
Query: 62 TS------LDGLLRGLTKLQVFNMDFNQITM 86
L GL K+Q ++ +T
Sbjct: 68 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98
Score = 26.5 bits (56), Expect = 6.4
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 243 PALEELFVSHNSLT-----RLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLN 297
L L+++ ++ L L + DL++N + I +++ Q L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 298 STLRIYLEGNPVLCDDSMRAVIDAMETINNNTKI 331
L L + M + A+E + ++
Sbjct: 429 EQLV--LYDIYW--SEEMEDRLQALEKDKPSLRV 458
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 47.2 bits (110), Expect = 1e-06
Identities = 35/225 (15%), Positives = 61/225 (27%), Gaps = 6/225 (2%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 94
+++ +PSD+ L ++ + G G L+ + N + V + +
Sbjct: 18 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 75
Query: 95 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
+ + L L T L +
Sbjct: 76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 135
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG-LSRLDLSHNKLRTISPD 213
N E + V L L N I+ + +N L + D
Sbjct: 136 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPND 195
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRL 258
F G +LDIS + +L L L S +L +L
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKL 238
Score = 38.7 bits (88), Expect = 8e-04
Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 8/232 (3%)
Query: 53 SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 111
+++T + L R +L ++ ++++ F +L+ I + N + +
Sbjct: 12 VFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Query: 112 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF-GTRNEGKNQVQG 170
+ + + L + + L + + K
Sbjct: 69 IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128
Query: 171 VTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNL 230
+ + + + L L+ N ++ I F G ++ +N
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188
Query: 231 LTTLEETSKTFLPALEELFVSHNSLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
L L L +S + L L L N+K +
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238
Score = 34.1 bits (76), Expect = 0.021
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
+ Q +++T + S L L +L G L +++S N
Sbjct: 9 SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63
Score = 30.3 bits (66), Expect = 0.40
Identities = 29/209 (13%), Positives = 64/209 (30%), Gaps = 5/209 (2%)
Query: 75 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTE 133
+VF +++T + D +N L ++ + + SG L + +S N + E
Sbjct: 11 RVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 134 FLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMG 193
+ D+ N E + + + + ++
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 194 IHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHN 253
L + + N +L ++ N + + + E +N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 254 SLTRLDKD-FHGLPVLCKADLAHNNIKAI 281
+L L D FHG D++ I ++
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSL 216
Score = 30.3 bits (66), Expect = 0.41
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 20 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA-NNNRITSL 64
S +L I + ++ +LPS L L A + + L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKL 238
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 46.6 bits (109), Expect = 2e-06
Identities = 29/214 (13%), Positives = 75/214 (35%), Gaps = 15/214 (7%)
Query: 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
L+ + ++ + + L + +L A +T+++G+ + L L + NQI
Sbjct: 18 LANAIKIAAGKSNVTDTVTQADL-DGITTLSAFGTGVTTIEGV-QYLNNLIGLELKDNQI 75
Query: 85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
T + + +S + S + L + L +T +
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135
Query: 145 LRTVDLSYNKI----------NKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGI 194
L ++ + + + ++ + LK N+I ++ L +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASL 194
Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISH 228
L + L +N++ +SP +L ++ +++
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
Score = 41.9 bits (97), Expect = 6e-05
Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 16/216 (7%)
Query: 70 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 129
L + +T +L + ++S +T++ + L L L L N
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN 73
Query: 130 QLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQ--------- 180
Q+T+ + + K + + +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 181 -HNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
+ ++ + + LS + L L L N ++ + +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 240 TFLPALEELFVSHNSLTRLDKDFHGLPVLCKADLAH 275
LP L E+ + +N ++ + L L +
Sbjct: 194 --LPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN 226
Score = 39.6 bits (91), Expect = 4e-04
Identities = 28/198 (14%), Positives = 61/198 (30%), Gaps = 14/198 (7%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L N I+ + +T + + L + L +T ++ ++ L L ++L N
Sbjct: 17 ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN 73
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
+I + + LK + + D++ +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 214 DFIGLDSLKMLDI----------SHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFH 263
++ L+ + + S + T L L L N ++ +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLA 192
Query: 264 GLPVLCKADLAHNNIKAI 281
LP L + L +N I +
Sbjct: 193 SLPNLIEVHLKNNQISDV 210
Score = 27.7 bits (60), Expect = 2.4
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 5 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 58
L L ++N++ + L +L L + ++ NQ+ + + S L + N
Sbjct: 175 LTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226
Score = 27.7 bits (60), Expect = 2.6
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 37
L +L + L NN++ + L S L ++ + NQ
Sbjct: 193 SLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT-NQ 227
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 45.0 bits (105), Expect = 4e-06
Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 20/167 (11%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-------------- 47
L ++ + NN+ +KS++G + L + L + N+L + L
Sbjct: 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK 103
Query: 48 ---FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 104
+ + + + + GL L + + +
Sbjct: 104 DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSL 163
Query: 105 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 151
+ S L+GLTKL LYLS N +++ L + GLK L ++L
Sbjct: 164 EDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208
Score = 43.8 bits (102), Expect = 1e-05
Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 15/192 (7%)
Query: 70 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 129
+ N+ +T L+++D I N+ I S+ + L + L+L+ N
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN 78
Query: 130 QLT----------EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKL 179
+LT L + + K+ + G + + G+ ++ +L+
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 180 QHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSK 239
+ + + LS + GL L+ L +S N ++ L +
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198
Query: 240 TFLPALEELFVS 251
L L+ L +
Sbjct: 199 --LKNLDVLELF 208
Score = 34.6 bits (78), Expect = 0.014
Identities = 23/189 (12%), Positives = 55/189 (29%), Gaps = 16/189 (8%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
+L+ +T + + L + + +++ + + I+ L + + L+ N
Sbjct: 22 AFAETIKDNLKKKSVTD-AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGN 78
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
K+ + + LK + + L L
Sbjct: 79 KLT-------------DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
D GL L L+ + + + + + ++ GL L L
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 274 AHNNIKAIN 282
+ N+I +
Sbjct: 186 SKNHISDLR 194
Score = 27.3 bits (59), Expect = 3.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 31
GLT L L+L+ N + L L L L +L
Sbjct: 176 GLTKLQNLYLSKNHISDLRA-LAGLKNLDVL 205
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 43.7 bits (102), Expect = 7e-06
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 4/119 (3%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
D + L+ L+S L + +L + L + +L SL +NNR+
Sbjct: 19 RYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRL 77
Query: 62 TSLDGL---LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 117
LD + ++ L++ N+ N++ R + L+ + L N ++ S
Sbjct: 78 YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
Score = 39.4 bits (91), Expect = 2e-04
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95
Q+E L + + + S L V N + +R +N+
Sbjct: 7 EQVEQLKLIMSKRYDGSQQALDLKGLRSDPDL-VAQNIDVVLNRRSSMAATLR-IIEENI 64
Query: 96 HNLDSISLQNNQITSMNS---SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 152
L S++L NN++ ++ + L L LS N+L D +L + L
Sbjct: 65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124
Query: 153 NKI 155
N +
Sbjct: 125 NSL 127
Score = 38.6 bits (89), Expect = 3e-04
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 176 ELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS--PDDFIGLDSLKMLDISHNLLTT 233
L + + L I L L+LS+N+L + +LK+L++S N L +
Sbjct: 46 VLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105
Query: 234 LEETSKTFLPALEELFVSHNSLTRLDKD 261
E K LEEL++ NSL+ +D
Sbjct: 106 ERELDKIKGLKLEELWLDGNSLSDTFRD 133
Score = 38.6 bits (89), Expect = 4e-04
Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 103 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 162
L+ Q+ + +S + L L D+ ++ +
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSSMAATL---- 57
Query: 163 EGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRL---DLSHNKLRTISPDDFIGLD 219
+ + + + L L +N + LD + L +LS N+L++ D I
Sbjct: 58 --RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL 115
Query: 220 SLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
L+ L + N L+ T++ A+ E F L RLD
Sbjct: 116 KLEELWLDGNSLSDTFRDQSTYISAIRERF---PKLLRLD 152
Score = 30.2 bits (67), Expect = 0.31
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEET 237
+L+ ++E L + + S+ L LR S D + + +L+ ++ TL
Sbjct: 3 ELKPEQVEQLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAATLRII 60
Query: 238 SKTF-------------------------LPALEELFVSHNSLTRLDK-DFHGLPVLCKA 271
+ P L+ L +S N L + D L +
Sbjct: 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL 120
Query: 272 DLAHNNI 278
L N++
Sbjct: 121 WLDGNSL 127
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 43.2 bits (100), Expect = 3e-05
Identities = 45/259 (17%), Positives = 88/259 (33%), Gaps = 15/259 (5%)
Query: 5 LNWLFLNNNRLK---SLEGQLGTLSKLQL--LVIEQNQLEALPSDIQLFSQLGSLYANNN 59
+N L L+ L + L L L + N + +P I +QL LY +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 60 RITSLDGLLRG-LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSG 117
++ + L + +N ++ +L NL I+ N+I+ ++ S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 118 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFEL 177
+KL + L VDLS N + + G ++ ++ +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 178 KLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLT-TLEE 236
L + + + DL +N++ P L L L++S N L + +
Sbjct: 232 SLAFDLGKVGLSKNLNGL-----DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 237 TSKTFLPALEELFVSHNSL 255
L + ++N
Sbjct: 287 GGN--LQRFDVSAYANNKC 303
Score = 36.7 bits (83), Expect = 0.004
Identities = 39/261 (14%), Positives = 79/261 (30%), Gaps = 8/261 (3%)
Query: 20 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQL--GSLYANNNRITSLDGLLRGLTKLQVF 77
Q ++ L L + + +PS + L + NN + + + LT+L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 78 NMDFNQITMVRRDEFQNLHNL-DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 136
+ ++ D + L N ++ S+S L L + N+++ +
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 137 DDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHG 196
D +L T N+ + + + + ++ G
Sbjct: 167 DSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---FGSDK 221
Query: 197 LSRLDLSHNKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLT 256
++ +L LD+ +N + T L L L VS N+L
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 257 RLDKDFHGLPVLCKADLAHNN 277
L + A+N
Sbjct: 282 GEIPQGGNLQRFDVSAYANNK 302
Score = 30.5 bits (67), Expect = 0.38
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 1 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 38
L L+ L ++ N L Q G L + + N+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 40.9 bits (94), Expect = 6e-05
Identities = 28/132 (21%), Positives = 47/132 (35%), Gaps = 11/132 (8%)
Query: 195 HGLSRLDLSHNKLRTISPDDFIGLDSLKMLDISHN-LLTTLEETSKTFLPALEELFVS-H 252
HG S L + + G ++L L I + L LE L L L +
Sbjct: 8 HGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Query: 253 NSLTRLDKDFHGLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCD 312
FH P L + +L+ N ++++ + S + L GNP+ C
Sbjct: 67 GLRFVAPDAFHFTPRLSRLNLSFNALESL--------SWKTVQGLSLQELVLSGNPLHCS 118
Query: 313 DSMRAVIDAMET 324
++R + E
Sbjct: 119 CALRWLQRWEEE 130
Score = 38.2 bits (87), Expect = 5e-04
Identities = 27/139 (19%), Positives = 46/139 (33%), Gaps = 7/139 (5%)
Query: 96 HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYNK 154
H + + L G L LY+ + Q L L D+RGL LR + + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLR-TISPD 213
+ + + L L N +E+L + L L LS N L + +
Sbjct: 68 LR-----FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122
Query: 214 DFIGLDSLKMLDISHNLLT 232
+ + + L
Sbjct: 123 WLQRWEEEGLGGVPEQKLQ 141
Score = 29.4 bits (64), Expect = 0.52
Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 49 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQ 107
L + L G L ++ Q + + + + L L ++++ +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 108 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 156
+ + T E L L+ + LS N ++
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 42.0 bits (97), Expect = 7e-05
Identities = 33/257 (12%), Positives = 85/257 (33%), Gaps = 9/257 (3%)
Query: 10 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT--SLDGL 67
L L + ++ ++ ++ ++ + +N+ I +L G+
Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66
Query: 68 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS------LQNNQITSMNSSLSGLTKL 121
L +KLQ +++ +++ + NL ++ + ++ SS S L +L
Sbjct: 67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126
Query: 122 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQH 181
+ + + + ++LS + N + + +L
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186
Query: 182 NEIENLDGALMGIHGLSRLDLSH-NKLRTISPDDFIGLDSLKMLDISHNLLTTLEETSKT 240
+ ++ L L LS + + + + +LK L + + + K
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246
Query: 241 FLPALEELFVSHNSLTR 257
LP L+ ++ R
Sbjct: 247 ALPHLQINCSHFTTIAR 263
Score = 33.5 bits (75), Expect = 0.032
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 146 RTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHN 205
+T+DL+ ++ T V + + ++ + +DLS++
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVI------AFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56
Query: 206 KLRTISPDDFIG-LDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHG 264
+ + + L+ L + L+ + L L +S S
Sbjct: 57 VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116
Query: 265 LPVLCK 270
L +
Sbjct: 117 LSSCSR 122
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 40.1 bits (92), Expect = 2e-04
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 10/161 (6%)
Query: 100 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 159
+ I M+++LS L +L LS N + + + + G++ LR + L N I K
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRILSLGRNLIKKI- 85
Query: 160 TRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDDFI-GL 218
+ V + E + + L L +S+NK+ D + L
Sbjct: 86 ------ENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139
Query: 219 DSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLD 259
D L+ L ++ N L + + E+ +L +LD
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
Score = 32.4 bits (72), Expect = 0.073
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 37 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 96
E S + ++ L+ I +D L L + + N I + +
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGME 70
Query: 97 NL 98
NL
Sbjct: 71 NL 72
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 39.8 bits (91), Expect = 2e-04
Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 9/180 (5%)
Query: 36 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 95
L+ +P DI L + L N S DGL L L + NQ+T + + F+
Sbjct: 18 RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 96 HNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 154
++ + L N+I N GL +L L L NQ++ + L L +
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS------L 131
Query: 155 INKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPDD 214
N + + + L GA + + DL H++ + S +
Sbjct: 132 NLASNPFNCNCHLAWFAEWLRKKSLNGGAARC--GAPSKVRDVQIKDLPHSEFKCSSENS 189
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 37.7 bits (86), Expect = 0.001
Identities = 26/165 (15%), Positives = 51/165 (30%), Gaps = 13/165 (7%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
+L + ++ I S+ + L L + S+NQLT+ ++ +
Sbjct: 38 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 96
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTI--- 210
+ N + NL+ + + +S +
Sbjct: 97 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLN 156
Query: 211 -------SPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEEL 248
L +L+ LDIS N ++ + +K L LE L
Sbjct: 157 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK--LTNLESL 199
Score = 37.7 bits (86), Expect = 0.001
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 17/200 (8%)
Query: 25 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 84
L++ V+ + + S L Q+ +L A+ I S+DG + L L N NQ
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ- 73
Query: 85 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 144
+ +NL L I + NNQI + + ++ L ++ L R
Sbjct: 74 -LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132
Query: 145 LRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSH 204
L + + I+ + + +LK L + L RLD+S
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-----------PLANLTTLERLDISS 181
Query: 205 NKLRTISPDDFIGLDSLKML 224
NK+ IS L +L+ L
Sbjct: 182 NKVSDISV--LAKLTNLESL 199
Score = 35.0 bits (79), Expect = 0.008
Identities = 30/167 (17%), Positives = 60/167 (35%), Gaps = 28/167 (16%)
Query: 2 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 61
L + L + +KS++G + L+ L + NQ +DI L L
Sbjct: 39 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ----LTDITPLKNLTKLVDILMNN 93
Query: 62 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 112
+ + + + + D +NL NL+ + L +N I+ ++
Sbjct: 94 NQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 153
Query: 113 ------------SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 147
L+ LT L L +S N++++ + + L L +
Sbjct: 154 QLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLES 198
Score = 31.6 bits (70), Expect = 0.13
Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 16/188 (8%)
Query: 94 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 153
L L +T S + L ++ L + +D + L L ++ S N
Sbjct: 16 ALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 72
Query: 154 KINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTISPD 213
Q+ +T + L + + N + + +L+ L
Sbjct: 73 -------------QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 119
Query: 214 DFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCKADL 273
D L +L L+ T+ + S + ++ K L L + D+
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 179
Query: 274 AHNNIKAI 281
+ N + I
Sbjct: 180 SSNKVSDI 187
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 35.2 bits (79), Expect = 0.011
Identities = 17/124 (13%), Positives = 43/124 (34%), Gaps = 19/124 (15%)
Query: 77 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-------MNSSLSGLTKLAYLYLSHN 129
N + + ++ NL + L + +++ S L L L +N
Sbjct: 224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 283
Query: 130 QLTEFLLDDI-----RGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEI 184
++ + + + L ++L+ N+ ++ V + +F + E+
Sbjct: 284 EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD------VVDEIREVFSTR-GRGEL 336
Query: 185 ENLD 188
+ LD
Sbjct: 337 DELD 340
Score = 34.5 bits (77), Expect = 0.019
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 7/72 (9%)
Query: 195 HGLSRLDLSHNKL-----RTISPDDFIGLDSLKMLDISHNLLTTLEETSKTFLPALEELF 249
GL L L +N++ RT+ + L L+++ N + ++
Sbjct: 273 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR- 331
Query: 250 VSHNSLTRLDKD 261
L LD
Sbjct: 332 -GRGELDELDDM 342
Score = 34.5 bits (77), Expect = 0.021
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 97 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSY 152
+L ++ S+ + L + + LS N + +L ++I K L + S
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 153 NKINKFG 159
+
Sbjct: 69 IFTGRVK 75
Score = 34.1 bits (76), Expect = 0.027
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 17 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGL 71
S+EG+ L+L I +++ + + + + + N I L +
Sbjct: 4 SIEGK-----SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 58
Query: 72 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 112
L++ V+ + + L L L+ ++ ++
Sbjct: 59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 99
Score = 31.4 bits (69), Expect = 0.19
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 142 LKRLRTVDLSYNKINKFGTRNEGKNQVQGVTNIFELKLQHNEIENLDGALMGIHGLSRLD 201
L+T+ L YN+I R + + ++ L+L N D + I +
Sbjct: 272 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFST- 330
Query: 202 LSHNKLRTISPDD 214
+L + +
Sbjct: 331 RGRGELDELDDME 343
Score = 31.4 bits (69), Expect = 0.21
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 114 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQGVTN 173
S+ G L ++ + + ++ + LS N I R +N + +
Sbjct: 4 SIEGK-SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN-IASKKD 60
Query: 174 IFELKLQHNEIENLDG 189
+ + +
Sbjct: 61 LEIAEFSDIFTGRVKD 76
Score = 30.6 bits (67), Expect = 0.38
Identities = 34/301 (11%), Positives = 82/301 (27%), Gaps = 31/301 (10%)
Query: 2 LTDLNWLFLNNNRL-----KSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLY 55
+ + L+ N + + L + + L++ + +I + L
Sbjct: 30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 89
Query: 56 ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF-----QNLHNLDSISLQNNQITS 110
++ ++ + + + + Q +
Sbjct: 90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 149
Query: 111 MNSSLSGLTKLAYLYLSHNQLT-EFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGKNQVQ 169
+N L + N+L + + + + R + N ++
Sbjct: 150 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 209
Query: 170 GVTNIFELKLQHNEI--------ENLDGALMGIHGLSRLDLSHNKLRT------ISPDDF 215
G+ ELK+ + L AL L L L+ L +
Sbjct: 210 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 269
Query: 216 IGLDSLKMLDISHNLLT-----TLEETSKTFLPALEELFVSHNSLTRLDKDFHGLPVLCK 270
+ L+ L + +N + TL+ +P L L ++ N + D + +
Sbjct: 270 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFS 329
Query: 271 A 271
Sbjct: 330 T 330
Score = 29.5 bits (64), Expect = 0.72
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 4 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL-----EALPSDIQLFSQLGSLYANN 58
L + KS+ L ++ +V+ N + L +I L ++
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 59 NRITSLDG 66
+
Sbjct: 69 IFTGRVKD 76
Score = 28.7 bits (62), Expect = 1.4
Identities = 10/83 (12%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 177 LKLQHNEIENLDGALMGIHGLSRLDLSHNKLRTIS----PDDFIGLDSLKMLDISHNLLT 232
+ + +++ L+ + + LS N + T + ++ L++ + S
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 233 TLEETSKTFLPALEELFVSHNSL 255
+++ L L + + L
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKL 95
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 32.3 bits (73), Expect = 0.11
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 331 IHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTTQRSTTSTTTQ---TPTTP 382
+G C DS+ ++ TTT+T T + T+ +T T PT P
Sbjct: 353 AYGSGYCLKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIP 407
>d3c0na2 f.8.1.1 (A:85-468) (Pro)aerolysin, pore-forming lobe
{Aeromonas hydrophila [TaxId: 644]}
Length = 384
Score = 29.8 bits (67), Expect = 0.70
Identities = 9/94 (9%), Positives = 25/94 (26%), Gaps = 11/94 (11%)
Query: 314 SMRAVIDAMETINNNTKIHGETICQPDSNETSTTTTTTTTTT-----------PEPTPAP 362
+ V + N++ +T+T + T T P
Sbjct: 109 DRQLVKTVVGWAVNDSDTPQSGYDVTLRGDTATNWSKTNTYGLSEKVTTKNKFKWPLVGE 168
Query: 363 TSTTTQRSTTSTTTQTPTTPIQEEYTETITLELP 396
T + + + + ++++ +P
Sbjct: 169 TELSIEIAANQSWASQNGGSTTTSLSQSVRPTVP 202
>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
x100 [TaxId: 105351]}
Length = 472
Score = 29.3 bits (65), Expect = 1.1
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 345 STTTTTTTTTTPEPTPAPTSTTT 367
+ T+ + T ++ T P+ T
Sbjct: 449 AATSASGTYSSVTVTSWPSIVAT 471
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
9606]}
Length = 184
Score = 27.3 bits (60), Expect = 2.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 340 DSNETSTTTTTTTTTTPEPTPAPTSTTTQR 369
D+++T+ T + PTP P S QR
Sbjct: 130 DNSDTAEPTKAGRGASQPPTPTPASDAFQR 159
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 26.3 bits (57), Expect = 3.5
Identities = 7/70 (10%), Positives = 19/70 (27%), Gaps = 2/70 (2%)
Query: 264 GLPVLCKADLAHNNIKAINIQLALKTQCQIFGLNSTLRIYLEGNPVLCDDSMRAVIDAME 323
GL ++ ++ ++ + G ++ + D A
Sbjct: 15 GLERSAWGNIPL--MRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFG 72
Query: 324 TINNNTKIHG 333
+ T+I
Sbjct: 73 GFWDATEIPT 82
>d1azta1 a.66.1.1 (A:88-201) Transducin (alpha subunit), insertion
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 114
Score = 26.0 bits (57), Expect = 3.9
Identities = 2/14 (14%), Positives = 8/14 (57%)
Query: 313 DSMRAVIDAMETIN 326
+++ ++ AM +
Sbjct: 14 EAIETIVAAMSNLV 27
>d2bcjq1 a.66.1.1 (Q:67-183) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 117
Score = 26.0 bits (57), Expect = 4.0
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 313 DSMRAVIDAMETIN-----NNTKIHGETICQPDSNETSTTT 348
+M+A+I AM+T+ + K H + + + D + S
Sbjct: 19 TAMQAMIRAMDTLKIPYKYEHNKAHAQLVREVDVEKVSAFE 59
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 313 DSMRAVIDAMETI-----NNNTKIHGETICQPDSNETSTTTTTTTTTTPEP 358
MR ++DA E + +N ++HG+ + D+ T
Sbjct: 19 KGMRVLVDAREKLHIPWGDNKNQLHGDKLMAFDTRAPMAAQGMVETRVFLQ 69
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
capensis omega virus [TaxId: 12541]}
Length = 539
Score = 26.5 bits (58), Expect = 7.4
Identities = 20/88 (22%), Positives = 25/88 (28%), Gaps = 2/88 (2%)
Query: 320 DAMETINNNTKIHGETICQPDSNETSTTTTTTTTTTPEPTPAPTSTTT-QRSTTSTTTQT 378
M+ + T D T T APT T T +TTS
Sbjct: 287 YTMQYFDTTTNEWNGFANPDDVVTFGQTGGAAGTNATITITAPTVTLTILATTTSAANVI 346
Query: 379 PTTPIQEEYTETIT-LELPQPVETNNQI 405
+ E T E+P P T Q
Sbjct: 347 NFRNLDAETTAASNRSEVPLPPLTFGQT 374
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.365
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,371,135
Number of extensions: 61351
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 285
Number of HSP's successfully gapped: 148
Length of query: 419
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 331
Effective length of database: 1,199,356
Effective search space: 396986836
Effective search space used: 396986836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (24.8 bits)