BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4258
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 56 NAFPPTIRKLHVGFNNLTSLNNS-LRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVI 113
+ P KL + L +L+++ RGLT L WL L+ N+L++L G L++L L +
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90
Query: 114 EQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDE 171
NQL +LP + +QL LY N++ SL G+ LTKL+ ++ NQ+ +
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 172 FQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
F L NL ++SL NQ+ S+ + + L KL + L NQ
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAY 203
D RGLTKL N+D+NQ+ + F +L L ++ L NNQ+ S+ LT+L
Sbjct: 52 DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 204 LYLSHNQLTEF---LLDDIRGLKRLR 226
LYL NQL + D + LK LR
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELR 137
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 56 NAFPPTIRKLHVGFNNLTSLNNS-LRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVI 113
+ P KL + L +L+++ RGLT L WL L+ N+L++L G L++L L +
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90
Query: 114 EQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDE 171
NQL +LP + +QL LY N++ SL G+ LTKL+ ++ NQ+ +
Sbjct: 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA 150
Query: 172 FQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
F L NL ++SL NQ+ S+ + + L KL + L NQ
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 5/118 (4%)
Query: 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
+ L+++PS I ++ L + S D RGLTKL N+D+NQ+ + F
Sbjct: 21 CQGKSLDSVPSGIPADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 173 QNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLR 226
+L L ++ L NNQ+ S+ LT+L LYL NQL + D + LK LR
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 92/169 (54%), Gaps = 6/169 (3%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQL 118
P +R L +G N L ++ +L+ LT+L +L L N+L+SL G L+ L+ LV+ +NQL
Sbjct: 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 119 EALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
++LP + + L LY +N++ SL G+ LT L ++D NQ+ + F L
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLT 181
Query: 177 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
L +SL +NQ+ S+ + LT L +++L +N + DI L R
Sbjct: 182 QLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPW-DCACSDILYLSR 229
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDG-------LLRGLTKLQVFNMDFNQITMVR 168
+Q+ A SDI+ S G Y N R +L G L+ LT L + NQ+ +
Sbjct: 44 DQIIANNSDIK--SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP 101
Query: 169 RDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKR 224
F L NL + L NQ+ S+ + LT L YLYL HNQL + D + L R
Sbjct: 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTR 161
Query: 225 L 225
L
Sbjct: 162 L 162
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%)
Query: 58 FPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQ 115
P +KL + N L+SL + + LT L L+LN+N+L++L G L L+ L +
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 116 NQLEALPSDIQLFSQL---GSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDE 171
N+L+ALP I +F QL L + N++ SL + LTKL ++ +N++ + +
Sbjct: 95 NKLQALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152
Query: 172 FQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
F L +L + L NNQ+ + + LT+L L L +NQL L++L+ + L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 231 SYN 233
N
Sbjct: 213 QEN 215
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
+L A+PS+I ++ L +N+++SL LTKL++ ++ N++ + F+ L
Sbjct: 27 KLTAIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84
Query: 176 HNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
NL+++ + +N++ ++ + L LA L L NQL L +L + L YN+
Sbjct: 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 235 I 235
+
Sbjct: 145 L 145
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 9/156 (5%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQL 118
P +R L +G N L ++ +L+ LT+L +L L N+L+SL G L+ L+ LV+ +NQL
Sbjct: 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 119 EALPSDIQLFSQLGSL-YAN--NNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
++LP + F +L +L Y N +N++ SL G+ LT L ++ +NQ+ + F
Sbjct: 122 QSLPDGV--FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179
Query: 175 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
L L + L NQ+ S+ + LT L Y++L N
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 10/128 (7%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDG-------LLRGLTKLQVFNMDFNQITMVR 168
+Q+ A SDI+ S G Y N R +L G L+ LT L + NQ+ +
Sbjct: 44 DQIIANNSDIK--SVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP 101
Query: 169 RDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
F L NL + L NQ+ S+ + LT L YL L+HNQL L L
Sbjct: 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161
Query: 228 VDLSYNKI 235
+DLSYN++
Sbjct: 162 LDLSYNQL 169
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 58 FPPTIRKLHVGFNNLTSLNNS-LRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQ 115
PP L + N +T + + + L +L+ L L NN++ + G L KL+ L + +
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQI--TMVRRDEF 172
NQL+ LP ++ L L + N IT + + GL ++ V + N + + + F
Sbjct: 110 NQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
Q + L I + + IT++ L L L+L N++T+ ++GL L + LS+
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 233 NKIN 236
N I+
Sbjct: 226 NSIS 229
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKS--LE-GQLGTLSKLQLLVI 113
P T+++L V N +T + S+ GL + + L N LKS +E G + KL + I
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 114 EQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEF 172
+ +P L L L+ + N+IT +D L+GL L + FN I+ V
Sbjct: 179 ADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 218
N +L + L NN++ + L+ + +YL +N ++ +D
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIR 220
N+IT ++ +F+NL NL ++ L NN+I+ ++ + + L KL LYLS NQL E +
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 221 GLKRLRTVDLSYNKINK 237
L+ LR + K+ K
Sbjct: 122 TLQELRVHENEITKVRK 138
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 23/117 (19%)
Query: 57 AFPPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ 115
PP++ +LH+ N +T ++ SL+GL +L L L+ N + +++ G+L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANT------- 239
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
L L+ NNN++ + G L +QV + N I+ + ++F
Sbjct: 240 -------------PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 9/184 (4%)
Query: 58 FPPTIRKLHVGFNNLTSLNNS-LRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQ 115
PP L + N +T + + + L +L+ L L NN++ + G L KL+ L + +
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQI--TMVRRDEF 172
NQL+ LP ++ L L + N IT + + GL ++ V + N + + + F
Sbjct: 110 NQLKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
Q + L I + + IT++ L L L+L N++T+ ++GL L + LS+
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225
Query: 233 NKIN 236
N I+
Sbjct: 226 NSIS 229
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 7/166 (4%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKS--LE-GQLGTLSKLQLLVI 113
P T+++L V N +T + S+ GL + + L N LKS +E G + KL + I
Sbjct: 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 114 EQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEF 172
+ +P L L L+ + N+IT +D L+GL L + FN I+ V
Sbjct: 179 ADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 218
N +L + L NN++ + L+ + +YL +N ++ +D
Sbjct: 237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIR 220
N+IT ++ +F+NL NL ++ L NN+I+ ++ + + L KL LYLS NQL E +
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 221 GLKRLRTVDLSYNKINK 237
L+ LR + K+ K
Sbjct: 122 TLQELRVHENEITKVRK 138
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 23/117 (19%)
Query: 57 AFPPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ 115
PP++ +LH+ N +T ++ SL+GL +L L L+ N + +++ G+L+
Sbjct: 189 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLANT------- 239
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
L L+ NNN++ + G L +QV + N I+ + ++F
Sbjct: 240 -------------PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 84/177 (47%), Gaps = 24/177 (13%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117
PP +++L V N L SL L L W + NN+L SL S LQ L + NQ
Sbjct: 139 LPPGLQELSVSDNQLASLPALPSELCKL-WAY--NNQLTSLPM---LPSGLQELSVSDNQ 192
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRG----------LTKLQVFNMDFNQITMV 167
L +LP+ L S+L L+A NNR+TSL L G LT L V + ++ MV
Sbjct: 193 LASLPT---LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKEL-MV 248
Query: 168 RRDEFQNLHNLD----SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR 220
+ +L L S+S+ NQ+T + SL L+ + L N L+E L +R
Sbjct: 249 SGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 29/171 (16%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNN-NRLKSLEGQLGTL---------- 105
A PP +R L V N LTSL GL +L+ +F N L +L L L
Sbjct: 78 ALPPELRTLEVSGNQLTSLPVLPPGLLELS-IFSNPLTHLPALPSGLCKLWIFGNQLTSL 136
Query: 106 ----SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 161
LQ L + NQL +LP+ L S+L L+A NN++TSL L GL +L V +
Sbjct: 137 PVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL 193
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
+ + + ++ + NN++TS+ + SGL + L +S N+LT
Sbjct: 194 ASLPTLPSELYK-------LWAYNNRLTSLPALPSGLKE---LIVSGNRLT 234
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 87/171 (50%), Gaps = 34/171 (19%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L KL+ L +E N +
Sbjct: 68 PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLK-DLKKLKSLSLEHNGIS 125
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT IT++ R L LD
Sbjct: 126 DINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTKLD 159
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 160 TLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 34/171 (19%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L + E N +
Sbjct: 66 PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-EHNGIS 123
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT IT++ R L LD
Sbjct: 124 DINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTKLD 157
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 158 TLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 34/171 (19%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L + E N +
Sbjct: 68 PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-EHNGIS 125
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT IT++ R L LD
Sbjct: 126 DINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTKLD 159
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 160 TLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 204
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 57 AFPPTIRK----LHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
A PP + K LH+ N L + + +L T L L L+ L L+ GTL L L
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTL 82
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRD 170
+ NQL++LP Q L L + NR+TSL G LRGL +LQ + N++ +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 171 EFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 211
L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 233 NKI 235
N++
Sbjct: 134 NEL 136
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 57 AFPPTIRK----LHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
A PP + K LH+ N L + + +L T L L L+ L L+ GTL L L
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTL 82
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRD 170
+ NQL++LP Q L L + NR+TSL G LRGL +LQ + N++ +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 171 EFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 211
L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 233 NKI 235
N++
Sbjct: 134 NEL 136
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 34/171 (19%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L KL+ L +E N +
Sbjct: 65 PNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLSSLK-DLKKLKSLSLEHNGIS 122
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT + L R LTKL D
Sbjct: 123 DINGLVHL-PQLESLYLGNNKITDITVLSR-LTKL------------------------D 156
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 157 TLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 201
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 83/171 (48%), Gaps = 34/171 (19%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L + E N +
Sbjct: 88 PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-EHNGIS 145
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT IT++ R L LD
Sbjct: 146 DINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTKLD 179
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 180 TLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 224
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 172 FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
Q L NL S++L NNQIT + S + L + L+L+ N+LT+ + + LK L + L
Sbjct: 62 IQYLPNLTSLNLSNNQITDI-SPIQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLD 118
Query: 232 YNKI 235
NK+
Sbjct: 119 ENKV 122
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117
+ P + KL + N LT + L L +L WLFL+ N++K L L + E N
Sbjct: 84 YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL-EHNG 141
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
+ + + L QL SLY NN+IT IT++ R L
Sbjct: 142 ISDINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTK 175
Query: 178 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
LD++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 176 LDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117
+ P + KL + N LT + L L +L WLFL+ N++K L L + E N
Sbjct: 84 YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL-EHNG 141
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
+ + + L QL SLY NN+IT IT++ R L
Sbjct: 142 ISDINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTK 175
Query: 178 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
LD++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 176 LDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 222
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117
+ P + KL + N LT + L L +L WLFL+ N++K L L + E N
Sbjct: 84 YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL-EHNG 141
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
+ + + L QL SLY NN+IT IT++ R L
Sbjct: 142 ISDINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTK 175
Query: 178 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
LD++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 176 LDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 222
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 57 AFPPTIRK----LHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
A PP + K LH+ N L + + +L T L L L+ L L+ GTL L L
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTL 82
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRD 170
+ NQL++LP Q L L + NR+TSL G LRGL +LQ + N++ +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 171 EFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 211
L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 233 NKI 235
N++
Sbjct: 134 NEL 136
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117
+ P + KL + N LT + L L +L WLFL+ N++K L L + E N
Sbjct: 61 YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL-EHNG 118
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
+ + + L QL SLY NN+IT IT++ R L
Sbjct: 119 ISDINGLVHL-PQLESLYLGNNKITD--------------------ITVLSR-----LTK 152
Query: 178 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
LD++SL++NQI+ + L+GLTKL LYLS N ++ D+R L L+ +D+
Sbjct: 153 LDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS-----DLRALAGLKNLDV 199
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 79/162 (48%), Gaps = 8/162 (4%)
Query: 57 AFPPTIRK----LHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
A PP + K LH+ N L + + +L T L L L+ L L+ GTL L L
Sbjct: 24 ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVD-GTLPVLGTL 82
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRD 170
+ NQL++LP Q L L + NR+TSL G LRGL +LQ + N++ +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142
Query: 171 EFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQL 211
L+ +SL NNQ+T + + L+GL L L L N L
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ NQ+T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
++ QL ALP D+ + + L N SL L+ T+L N+D ++T ++ D
Sbjct: 17 CDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMP-YTRLTQLNLDRCELTKLQVD-- 73
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
L L ++ L +NQ+ S+ L L L +S N+LT L +RGL L+ + L
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 233 NKI 235
N++
Sbjct: 134 NEL 136
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 83/171 (48%), Gaps = 31/171 (18%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L + E N +
Sbjct: 66 PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-EHNGIS 123
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT + L R LTKL D
Sbjct: 124 DINGLVHL-PQLESLYLGNNKITDITVLSR-LTKL------------------------D 157
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI + L+ LTKL LYLS N +++ L +RGLK L ++L
Sbjct: 158 TLSLEDNQIRRI-VPLARLTKLQNLYLSKNHISD--LRALRGLKNLDVLEL 205
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 34/171 (19%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
P + KL + N LT + L L +L WLFL+ N++K L L + E N +
Sbjct: 63 PNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL-EHNGIS 120
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ + L QL SLY NN+IT + L R LTKL D
Sbjct: 121 DINGLVHL-PQLESLYLGNNKITDITVLSR-LTKL------------------------D 154
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
++SL++NQI+ + L+ LTKL LYLS N ++ D+R L L+ +D+
Sbjct: 155 TLSLEDNQISDI-VPLACLTKLQNLYLSKNHIS-----DLRALCGLKNLDV 199
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 104/242 (42%), Gaps = 40/242 (16%)
Query: 29 LTSDDLKGTPAXXXXXXXXXXXXXXXENAFPP--TIRKLHVGFNNLTSL----------- 75
L DD KG E AF P ++KL++ N+L +
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL 128
Query: 76 ---NNSLR--------GLTDLNWLFLNNNRLKSLEGQLGTLSKLQL--LVIEQNQLEALP 122
+N +R GL ++N + + N L++ + G L+L L I + +L +P
Sbjct: 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188
Query: 123 SDIQLFSQLGSLYANNNRITS--LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180
D+ L L+ ++N+I + L+ LLR +KL + NQI M+ L L
Sbjct: 189 KDLP--ETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245
Query: 181 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR----GLKRLRTVDLSYNKIN 236
+ L NN+++ + + L L L +YL N +T+ ++D G+KR YN I+
Sbjct: 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR-----AYYNGIS 300
Query: 237 KF 238
F
Sbjct: 301 LF 302
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 10/171 (5%)
Query: 70 NNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQL 127
N+++ L + +GL L L L NN++ + E L KLQ L I +N L +P ++
Sbjct: 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122
Query: 128 FSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI--TMVRRDEFQNLHNLDSISLQ 184
S L L ++NRI + G+ GL + M N + + F L L+ + +
Sbjct: 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180
Query: 185 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++T + L L L+L HN++ L+D+ +L + L +N+I
Sbjct: 181 EAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 28/188 (14%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP------ 122
FNN + + L+ LT+LN L L++N + + L L+ LQ L NQ+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 123 ------------SDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167
SDI + ++L SL A NN+I+ + L LT L +++ NQ+ +
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI 232
Query: 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
+L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 233 GT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTALTN 287
Query: 228 VDLSYNKI 235
++L+ N++
Sbjct: 288 LELNENQL 295
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 47/173 (27%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLF 128
NNLT +N S LTD+ LK+L
Sbjct: 62 LNNLTQINFSNNQLTDI-------TPLKNL------------------------------ 84
Query: 129 SQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
++L + NNN+I + L L LT L +FN NQIT + D +NL NL+ + L +N
Sbjct: 85 TKLVDILMNNNQIADITPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSN 139
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
I+ + S+LSGLT L L S NQ+T+ L + L L +D+S NK++
Sbjct: 140 TISDI-SALSGLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVSDIS 189
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 216 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 192
+++ L GLT L ++ NQ+ + NL NL ++L N I+ ++
Sbjct: 274 SNISPL-AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 193 ------------SSLSGLTKLAYLYLSHNQLTEF 214
SSL+ LT + +L HNQ+++
Sbjct: 331 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 94 NNQIADI 100
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 28/188 (14%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP------ 122
FNN + + L+ LT+LN L L++N + + L L+ LQ L NQ+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 123 ------------SDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167
SDI + ++L SL A NN+I+ + L LT L +++ NQ+ +
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI 232
Query: 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
+L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 233 GT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTALTN 287
Query: 228 VDLSYNKI 235
++L+ N++
Sbjct: 288 LELNENQL 295
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 47/173 (27%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLF 128
NNLT +N S LTD+ LK+L
Sbjct: 62 LNNLTQINFSNNQLTDI-------TPLKNL------------------------------ 84
Query: 129 SQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
++L + NNN+I + L L LT L +FN NQIT + D +NL NL+ + L +N
Sbjct: 85 TKLVDILMNNNQIADITPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSN 139
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
I+ + S+LSGLT L L S NQ+T+ L + L L +D+S NK++
Sbjct: 140 TISDI-SALSGLTSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVSDIS 189
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 216 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 192
+++ L GLT L ++ NQ+ + NL NL ++L N I+ ++
Sbjct: 274 SNISPL-AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 193 ------------SSLSGLTKLAYLYLSHNQLTEF 214
SSL+ LT + +L HNQ+++
Sbjct: 331 RLFFSNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 94 NNQIADI 100
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 78 SLRGLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSL 134
S R +L L+L++N L ++ T L+ L+ L + N QL ++ P+ +L +L
Sbjct: 51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110
Query: 135 YANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-N 192
+ + + L GL RGL LQ + N + + D F++L NL + L N+I+S+
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
+ GL L L L N++ R L RL T+ L N ++ T
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 102 LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNM 159
+G + Q + + N++ +P+ + L L+ ++N + +D GL L+ ++
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 160 -DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLD 217
D Q+ V F L L ++ L + + L GL L YLYL N L D
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 218 DIRGLKRLRTVDLSYNKINKFGTR 241
R L L + L N+I+ R
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPER 171
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 61 TIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 118
++ L++ N L +L +++ R L +L LFL+ NR+ S+ E L L L++ QN++
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 119 EAL-PSDIQLFSQLGSLYANNNRITSL 144
+ P + +L +LY N +++L
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSAL 216
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 95/188 (50%), Gaps = 28/188 (14%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP------ 122
FNN + + L+ LT+LN L L++N + + L L+ LQ L NQ+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVTDLKPLANLT 173
Query: 123 ------------SDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167
SDI + ++L SL A NN+I+ + L LT L +++ NQ+ +
Sbjct: 174 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI 232
Query: 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
+L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 233 GT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTALTN 287
Query: 228 VDLSYNKI 235
++L+ N++
Sbjct: 288 LELNENQL 295
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 79/173 (45%), Gaps = 47/173 (27%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLF 128
NNLT +N S LTD+ LK+L
Sbjct: 62 LNNLTQINFSNNQLTDI-------TPLKNL------------------------------ 84
Query: 129 SQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
++L + NNN+I + L L LT L +FN NQIT + D +NL NL+ + L +N
Sbjct: 85 TKLVDILMNNNQIADITPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSN 139
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
I+ + S+LSGLT L L S NQ+T+ L + L L +D+S NK++
Sbjct: 140 TISDI-SALSGLTSLQQLNFSSNQVTD--LKPLANLTTLERLDISSNKVSDIS 189
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 216 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 192
+++ L GLT L ++ NQ+ + NL NL ++L N I+ ++
Sbjct: 274 SNISPL-AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 193 ------------SSLSGLTKLAYLYLSHNQLTEF 214
SSL+ LT + +L HNQ+++
Sbjct: 331 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 364
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 94 NNQIADI 100
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 78 SLRGLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSL 134
S R +L L+L++N L ++ T L+ L+ L + N QL ++ P+ +L +L
Sbjct: 50 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 109
Query: 135 YANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-N 192
+ + + L GL RGL LQ + N + + D F++L NL + L N+I+S+
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 169
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
+ GL L L L N++ R L RL T+ L N ++ T
Sbjct: 170 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 217
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 102 LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNM 159
+G + Q + + N++ +P+ + L L+ ++N + +D GL L+ ++
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 160 -DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLD 217
D Q+ V F L L ++ L + + L GL L YLYL N L D
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 218 DIRGLKRLRTVDLSYNKINKFGTR 241
R L L + L N+I+ R
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPER 170
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 61 TIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 118
++ L++ N L +L +++ R L +L LFL+ NR+ S+ E L L L++ QN++
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 188
Query: 119 EAL-PSDIQLFSQLGSLYANNNRITSL 144
+ P + +L +LY N +++L
Sbjct: 189 AHVHPHAFRDLGRLMTLYLFANNLSAL 215
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIE 114
P L + N+L SL N + LT L L+L N+L+SL G L+ L L +
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 115 QNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 172
NQL++LP+ + +QL L N N++ SL DG+ LT+L+ + NQ+ V F
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 173 QNLHNLDSISLQNN 186
L +L I L +N
Sbjct: 145 DRLTSLQYIWLHDN 158
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 87 WLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL-YAN--NNRIT 142
+L L N LKSL G L+ L L + N+L++LP+ + F++L SL Y N N++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKLTSLTYLNLSTNQLQ 89
Query: 143 SL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 200
SL +G+ LT+L+ ++ NQ+ + F L L + L NQ+ S+ + LT
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 201 LAYLYLSHNQLTEFLLDDIRGL 222
L Y++L H+ + IR L
Sbjct: 150 LQYIWL-HDNPWDCTCPGIRYL 170
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 103 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSL-DGLLRGLTKLQVFN 158
G ++ L +E N L++LP+ + F +L SL Y N++ SL +G+ LT L N
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGV--FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82
Query: 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
+ NQ+ + F L L ++L NQ+ S+ + LT+L L L NQL
Sbjct: 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 81/173 (46%), Gaps = 31/173 (17%)
Query: 79 LRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 138
+ LTDL L LN N+++ + L +L+ L NQ+ + + + ++L SL N
Sbjct: 173 IANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDI-TPVANXTRLNSLKIGN 230
Query: 139 NRITSLDGL---------------------LRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
N+IT L L ++ LTKL+ N+ NQI+ + NL
Sbjct: 231 NKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISV--LNNLSQ 288
Query: 178 LDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 229
L+S+ L NNQ+ + + + GLT L L+LS N +T DIR L L D
Sbjct: 289 LNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT-----DIRPLASLSKXD 336
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L +TKL V ++ ++ E+ L NL+ ++L NQIT + S LS L KL LY+
Sbjct: 43 LESITKLVVAG---EKVASIQGIEY--LTNLEYLNLNGNQITDI-SPLSNLVKLTNLYIG 96
Query: 208 HNQLTEFLLDDIRGLKRL 225
N++T DI L+ L
Sbjct: 97 TNKIT-----DISALQNL 109
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 33/190 (17%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG--------------------QLGTLSKL 108
FNN + + L+ LT+LN L L++N + + L L+ L
Sbjct: 119 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 178
Query: 109 QLLVIEQNQLEALPSDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165
+ L I N++ SDI + ++L SL A NN+I+ + L LT L +++ NQ+
Sbjct: 179 ERLDISSNKV----SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK 233
Query: 166 MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225
+ +L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 234 DIGT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTAL 288
Query: 226 RTVDLSYNKI 235
++L+ N++
Sbjct: 289 TNLELNENQL 298
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 48/172 (27%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLF 128
NNLT +N S LTD+ LK+L
Sbjct: 66 LNNLTQINFSNNQLTDI-------TPLKNL------------------------------ 88
Query: 129 SQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
++L + NNN+I + L L LT L +FN NQIT + D +NL NL+ + L +N
Sbjct: 89 TKLVDILMNNNQIADITPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSN 143
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
I+ + S+LSGLT L L NQ+T+ L + L L +D+S NK++
Sbjct: 144 TISDI-SALSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSNKVSDI 191
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 219 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 276
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 192
+++ L GLT L ++ NQ+ + NL NL ++L N I+ ++
Sbjct: 277 SNISPL-AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQ 333
Query: 193 ------------SSLSGLTKLAYLYLSHNQLTEF 214
SSL+ LT + +L HNQ+++
Sbjct: 334 RLFFANNKVSDVSSLANLTNINWLSAGHNQISDL 367
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 39 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 97
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 98 NNQIADI 104
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 33/190 (17%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG--------------------QLGTLSKL 108
FNN + + L+ LT+LN L L++N + + L L+ L
Sbjct: 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 179
Query: 109 QLLVIEQNQLEALPSDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165
+ L I N++ SDI + ++L SL A NN+I+ + L LT L +++ NQ+
Sbjct: 180 ERLDISSNKV----SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK 234
Query: 166 MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225
+ +L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 235 DIGT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTAL 289
Query: 226 RTVDLSYNKI 235
++L+ N++
Sbjct: 290 TNLELNENQL 299
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 48/172 (27%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLF 128
NNLT +N S LTD+ LK+L
Sbjct: 67 LNNLTQINFSNNQLTDI-------TPLKNL------------------------------ 89
Query: 129 SQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
++L + NNN+I + L L LT L +FN NQIT + D +NL NL+ + L +N
Sbjct: 90 TKLVDILMNNNQIADITPLANLTNLTGLTLFN---NQITDI--DPLKNLTNLNRLELSSN 144
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
I+ + S+LSGLT L L NQ+T+ L + L L +D+S NK++
Sbjct: 145 TISDI-SALSGLTSLQQLSFG-NQVTD--LKPLANLTTLERLDISSNKVSDI 192
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 220 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 277
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 192
+++ L GLT L N++ N+ + NL NL ++L N I+ ++
Sbjct: 278 SNISPL-AGLTALT--NLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQ 334
Query: 193 ------------SSLSGLTKLAYLYLSHNQLTEF 214
SSL+ LT + +L HNQ+++
Sbjct: 335 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 368
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 40 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 98
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 99 NNQIADI 105
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 90 LNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DG 146
L N +K + G KL+ + + NQ+ L P Q L SL N+IT L
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI-TSMNSSLSGLTKLAYLY 205
L GL LQ+ ++ N+I +R D FQ+LHNL+ +SL +N++ T + S L + ++
Sbjct: 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 206 LSHNQLTEFLLD 217
L+ N F+ D
Sbjct: 159 LAQN---PFICD 167
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 132 GSLYANNNRITS---LDGLLRGLTKLQV--------FNMDFNQITMVRRDEFQNLHNLDS 180
GSL+ S +D +GLT++ ++ N I ++ F L
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
Query: 181 ISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
I L NNQI+ + + GL L L L N++TE GL L+ + L+ NKIN
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 178 LDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ I L+ N I + + S KL + LS+NQ++E D +GL+ L ++ L NKI
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 237 KF 238
+
Sbjct: 94 EL 95
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 33/190 (17%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG--------------------QLGTLSKL 108
FNN + + L+ LT+LN L L++N + + L L+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL 174
Query: 109 QLLVIEQNQLEALPSDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165
+ L I N++ SDI + ++L SL A NN+I+ + L LT L +++ NQ+
Sbjct: 175 ERLDISSNKV----SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK 229
Query: 166 MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225
+ +L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 230 DIGT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTAL 284
Query: 226 RTVDLSYNKI 235
++L+ N++
Sbjct: 285 TNLELNENQL 294
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 69 FNNLTSLNNS---------LRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
NNLT +N S L+ LT L + +NNN++ + L L+ L L + NQ+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQIT 120
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ ++ + L L ++N I+ + L GLT LQ N NQ+T ++ NL L+
Sbjct: 121 DI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFG-NQVTDLK--PLANLTTLE 175
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD---LSYNKIN 236
+ + +N+++ + S L+ LT L L ++NQ++ DI L L +D L+ N++
Sbjct: 176 RLDISSNKVSDI-SVLAKLTNLESLIATNNQIS-----DITPLGILTNLDELSLNGNQLK 229
Query: 237 KFGT 240
GT
Sbjct: 230 DIGT 233
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 26/154 (16%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 215 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 272
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--------- 192
+++ L GLT L ++ NQ+ + NL NL ++L N I+ ++
Sbjct: 273 SNISPL-AGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 193 ------------SSLSGLTKLAYLYLSHNQLTEF 214
SSL+ LT + +L HNQ+++
Sbjct: 330 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDL 363
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 94 NNQIADI 100
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 95/190 (50%), Gaps = 33/190 (17%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG--------------------QLGTLSKL 108
FNN + + L+ LT+LN L L++N + + L L+ L
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL 174
Query: 109 QLLVIEQNQLEALPSDIQLFSQLG---SLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165
+ L I N++ SDI + ++L SL A NN+I+ + L LT L +++ NQ+
Sbjct: 175 ERLDISSNKV----SDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK 229
Query: 166 MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225
+ +L NL + L NNQI+++ + LSGLTKL L L NQ++ + + GL L
Sbjct: 230 DIGT--LASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISN--ISPLAGLTAL 284
Query: 226 RTVDLSYNKI 235
++L+ N++
Sbjct: 285 TNLELNENQL 294
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 69 FNNLTSLNNS---------LRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
NNLT +N S L+ LT L + +NNN++ + L L+ L L + NQ+
Sbjct: 62 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQIT 120
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
+ ++ + L L ++N I+ + L GLT LQ N NQ+T ++ NL L+
Sbjct: 121 DI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFG-NQVTDLK--PLANLTTLE 175
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD---LSYNKIN 236
+ + +N+++ + S L+ LT L L ++NQ++ DI L L +D L+ N++
Sbjct: 176 RLDISSNKVSDI-SVLAKLTNLESLIATNNQIS-----DITPLGILTNLDELSLNGNQLK 229
Query: 237 KFGT 240
GT
Sbjct: 230 DIGT 233
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
LT+L+ L LN N+LK + G L +L+ L L + NQ+ L + + ++L L N+I
Sbjct: 215 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQI 272
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDE-----------FQNLHNLDSIS-------- 182
+++ L GLT L ++ NQ+ + F N+ ++ +S
Sbjct: 273 SNISPL-AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 331
Query: 183 -LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF 214
NN+++ + SSL+ LT + +L HNQ+++
Sbjct: 332 FFSNNKVSDV-SSLANLTNINWLSAGHNQISDL 363
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 156 VFNMDFNQITMVRRDEF--------QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
V D +Q+T ++ D + L+NL I+ NNQ+T + + L LTKL + ++
Sbjct: 35 VSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI-TPLKNLTKLVDILMN 93
Query: 208 HNQLTEF 214
+NQ+ +
Sbjct: 94 NNQIADI 100
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 7/132 (5%)
Query: 90 LNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DG 146
L N +K + G KL+ + + NQ+ L P Q L SL N+IT L
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI-TSMNSSLSGLTKLAYLY 205
L GL LQ+ ++ N+I +R D FQ+LHNL+ +SL +N++ T + S L + ++
Sbjct: 99 LFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158
Query: 206 LSHNQLTEFLLD 217
L+ N F+ D
Sbjct: 159 LAQN---PFICD 167
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 132 GSLYANNNRITS---LDGLLRGLTKLQV--------FNMDFNQITMVRRDEFQNLHNLDS 180
GSL+ S +D +GLT++ ++ N I ++ F L
Sbjct: 1 GSLHCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRR 60
Query: 181 ISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
I L NNQI+ + + GL L L L N++TE GL L+ + L+ NKIN
Sbjct: 61 IDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 178 LDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ I L+ N I + + S KL + LS+NQ++E D +GL+ L ++ L NKI
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 237 KF 238
+
Sbjct: 94 EL 95
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 45/225 (20%)
Query: 62 IRKLHVGFNNLTS--LNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
I+ +++G+NNL + + SL+ L L N+L+ G+ KL L + NQ+
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366
Query: 120 ALPSDIQLFS-QLGSLYANNNRITSLDGLL--RGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+P++ F+ Q+ +L +N++ + + + ++ + +N+I V F L
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLD 426
Query: 177 -------NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEF-------------- 214
N+ SI+L NNQI+ L S + L+ + L N LTE
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKN 486
Query: 215 ----------------LLDDIRG--LKRLRTVDLSYNKINKFGTR 241
L DD R L L +DLSYN +KF T+
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 153 KLQVFNMDFNQI-TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
K+Q+ + +N + T Q L + NQ+ + KLA L L++NQ+
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYNQI 365
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKI 235
TE + +++ + ++NK+
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL 389
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
L ++P+ I +Q+ LY +NRIT L+ G+ LT+L ++D NQ+T++ F L
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 177 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
L +SL +NQ+ S+ + L L +++L +N + DI L R
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW-DCACSDILYLSR 126
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 32/132 (24%)
Query: 88 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 146
L+L +NR+ LE G L++L L ++ NQL LP+ G
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------------G 72
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK------ 200
+ LT+L +++ NQ+ + R F NL +L I L NN S + L++
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWISQHP 132
Query: 201 ---LAYLYLSHN 209
YL L H+
Sbjct: 133 WLVFGYLNLDHD 144
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEA 120
+RK+ VG + GL LN L L +NRL ++ Q LSKL+ L + N +E+
Sbjct: 71 VRKIEVG---------AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 121 LPSDIQLFSQLGSL----YANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
+PS F+++ SL R+ + + GL L+ N+ + + L
Sbjct: 122 IPS--YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTAL 177
Query: 176 HNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
L+ + L N++ + S GLT L L+L H Q+ + LK L ++LS+N
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 235 I 235
+
Sbjct: 238 L 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEA 120
+RK+ VG N GL LN L L +NRL ++ Q LSKL+ L + N +E+
Sbjct: 71 VRKIEVGAFN---------GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES 121
Query: 121 LPSDIQLFSQLGSL----YANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
+PS F+++ SL R+ + + GL L+ N+ + + L
Sbjct: 122 IPS--YAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDI--PNLTAL 177
Query: 176 HNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
L+ + L N++ + S GLT L L+L H Q+ + LK L ++LS+N
Sbjct: 178 VRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNN 237
Query: 235 I 235
+
Sbjct: 238 L 238
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 83 TDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNR 140
T+ L L NR+K+L + + + L+ L + +N + A+ P L +L +NR
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 141 ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 198
+ + G+ GL+ L ++ N+I ++ FQ+L+NL S+ + +N + + + + SGL
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 199 TKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINKF 238
L L L LT L + GL LR L+ N I +
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 91/235 (38%), Gaps = 57/235 (24%)
Query: 57 AFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIE 114
P R L +G N + +LN + L L LN N + ++E G L L+ L +
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 115 QNQLEALPSDIQLFSQLGSL----YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 170
N+L+ +P + +F+ L +L + N + LD + + L L+ + N + +
Sbjct: 89 SNRLKLIP--LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146
Query: 171 EFQNLHNLDSISLQNNQITSMN----SSLSGLT--------------------------- 199
F L++L+ ++L+ +TS+ S L GL
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206
Query: 200 ------------------KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L L ++H LT +R L LR ++LSYN I+
Sbjct: 207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 24/128 (18%)
Query: 65 LHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALP 122
L + NLT++ ++R L L +L L+ N + ++EG L L +LQ + + QL +
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 123 SDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 182
YA RGL L+V N+ NQ+T + F ++ NL+++
Sbjct: 289 P-----------YA-----------FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
Query: 183 LQNNQITS 190
L +N +
Sbjct: 327 LDSNPLAC 334
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 111 LVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVR 168
L I L A+P ++ L L + N I++++G +L L +LQ + Q+ +V
Sbjct: 229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE 288
Query: 169 RDEFQNLHNLDSISLQNNQITSMNSSL 195
F+ L+ L +++ NQ+T++ S+
Sbjct: 289 PYAFRGLNYLRVLNVSGNQLTTLEESV 315
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
L ++P+ I +Q+ LY +N+IT L+ G+ LT+L ++D NQ+T++ F L
Sbjct: 21 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78
Query: 177 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
L +SL +NQ+ S+ + L L +++L +N + DI L R
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW-DCACSDILYLSR 126
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Query: 88 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 146
L+L +N++ LE G L++L L ++ NQL LP+ G
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------------G 72
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL 195
+ LT+L +++ NQ+ + R F NL +L I L NN S +
Sbjct: 73 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI 121
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
L ++P+ I +Q+ LY +N+IT L+ G+ LT+L ++D NQ+T++ F L
Sbjct: 29 LASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 86
Query: 177 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
L +SL +NQ+ S+ + L L +++L +N + DI L R
Sbjct: 87 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW-DCACSDILYLSR 134
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 31/122 (25%)
Query: 88 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 146
L+L +N++ LE G L++L L ++ NQL LP+ G
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA----------------------G 80
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 206
+ LT+L +++ NQ+ + R F NL +L I L NN S + LYL
Sbjct: 81 VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDI--------LYL 132
Query: 207 SH 208
S
Sbjct: 133 SR 134
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Query: 71 NLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
NLT+L L D L L+ N L + L ++L L +++ +L L D L
Sbjct: 22 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTL-P 78
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++
Sbjct: 79 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 190 SMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 85 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 144
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 145 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 204
Query: 208 HN 209
N
Sbjct: 205 GN 206
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 60 PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117
P + L V FN LTSL +LRGL +L L+L N LK+L G L KL+ L + N
Sbjct: 101 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 160
Query: 118 LEALPSDI 125
L LP+ +
Sbjct: 161 LTELPAGL 168
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 5/164 (3%)
Query: 78 SLRGLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSL 134
S + +L L+L++N L ++ T L+ L+ L + N QL + P+ + L +L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 135 YANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-N 192
+ + + L GL RGL LQ + N + + + F++L NL + L N+I S+
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPE 169
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ GL L L L N + R L RL T+ L N ++
Sbjct: 170 HAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHN-QLTEFLLDDI 219
N+I+ V FQ+ NL + L +N + ++ ++ +GLT L L LS N QL
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 220 RGLKRLRTVDLSYNKINKFG 239
RGL L T+ L + + G
Sbjct: 101 RGLGHLHTLHLDRCGLQELG 120
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 61 TIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 118
++ L++ NNL +L +N+ R L +L LFL+ NR+ S+ E L L L++ QN +
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHV 188
Query: 119 EAL-PSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFN 162
+ P + +L +LY N ++ L +L L LQ ++ N
Sbjct: 189 ARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 84/205 (40%), Gaps = 40/205 (19%)
Query: 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLE 119
+IR++ VG + GL LN L L +N L + G LSKL+ L + N +E
Sbjct: 110 SIRQIEVG---------AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
Query: 120 ALPSDIQLFSQLGSL------------YANNNRITSLDGL---------------LRGLT 152
++PS F+++ SL Y + L L L L
Sbjct: 161 SIPS--YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLV 218
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQL 211
L+ M N +R F L +L + + N+Q++ + ++ GL L L L+HN L
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKIN 236
+ D L+ L + L +N N
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWN 303
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 133 SLYANNNRITSLDGLLRGLTKL--------QVFNMDFNQITMVRRDEFQNLHNLDSISLQ 184
S+ + +N+ + + RGL+++ + N+ N I M++ D F++LH+L+ + L
Sbjct: 48 SVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107
Query: 185 NNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
N I + + +GL L L L N LT L +LR + L N I
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Query: 71 NLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
NLT+L L D L L+ N L + L ++L L +++ +L L D L
Sbjct: 21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-P 77
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 190 SMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 60 PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117
P + L V FN LTSL +LRGL +L L+L N LK+L G L KL+ L + N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 118 LEALPSDI 125
L LP+ +
Sbjct: 160 LTELPAGL 167
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Query: 71 NLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
NLT+L L D L L+ N L + L ++L L +++ +L L D L
Sbjct: 21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-P 77
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 190 SMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 60 PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117
P + L V FN LTSL +LRGL +L L+L N LK+L G L KL+ L + N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 118 LEALPSDI 125
L LP+ +
Sbjct: 160 LTELPAGL 167
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 5/167 (2%)
Query: 71 NLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
NLT+L L D L L+ N L + L ++L L +++ +L L D L
Sbjct: 21 NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-P 77
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++
Sbjct: 78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 190 SMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 60 PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117
P + L V FN LTSL +LRGL +L L+L N LK+L G L KL+ L + N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 118 LEALPSDI 125
L LP+ +
Sbjct: 160 LTELPAGL 167
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 42/184 (22%)
Query: 60 PTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117
P I+ + G+NNL + SL+ L L +N+++ LE GT KL L ++ NQ
Sbjct: 548 PKIQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQ 606
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
+E +P D F+ ++GL KL+ FN ++++
Sbjct: 607 IEEIPEDFCAFTD------------QVEGLGFSHNKLKYIPNIFNA---------KSVYV 645
Query: 178 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
S+ N+I S ++S DD +G+ TV LSYN+I K
Sbjct: 646 XGSVDFSYNKIGSEGRNIS-----------------CSXDDYKGI-NASTVTLSYNEIQK 687
Query: 238 FGTR 241
F T
Sbjct: 688 FPTE 691
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 60 PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117
P + L V FN LTSL +LRGL +L L+L N LK+L G L KL+ L + N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANND 159
Query: 118 LEALPSDI 125
L LP+ +
Sbjct: 160 LTELPAGL 167
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 191 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLD-GL 147
L++N+L+SL TL L +L + N+L +LP ++ +L LY N + +L GL
Sbjct: 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L KL+ ++ N +T + L NLD++ LQ N + ++ G L + +L
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203
Query: 208 HN 209
N
Sbjct: 204 GN 205
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 60 PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117
P + L V FN LTSL +LRGL +L L+L N LK+L G L KL+ L + N
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159
Query: 118 LEALPSDI 125
L LP+ +
Sbjct: 160 LTELPAGL 167
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 1/106 (0%)
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
LG+L ++N++ SL L + L L V ++ FN++T + + L L + L+ N++ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 191 MNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 147
L+LN N L L ++ LS L++L + N+L +LP+++ QL Y +N +T+L
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE 311
Query: 148 LRGLTKLQVFNMDFNQI 164
L LQ ++ N +
Sbjct: 312 FGNLCNLQFLGVEGNPL 328
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 121
+ +L++ N+LT L ++ L++L L L++NRL SL +LG+ +L+ N + L
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 122 PSDI 125
P +
Sbjct: 309 PWEF 312
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 108 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167
L L + N L LP++I+ S L L ++NR+TSL L +L+ F N +T +
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308
Query: 168 RRDEFQNLHNLDSISLQNNQI 188
EF NL NL + ++ N +
Sbjct: 309 PW-EFGNLCNLQFLGVEGNPL 328
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 162 NQITMVRRDEF--QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
N++ M + ++ Q H LD L N QI ++++++ L LYL+ N LTE L +I
Sbjct: 211 NRMVMPKDSKYDDQLWHALD---LSNLQIFNISANIFKYDFLTRLYLNGNSLTE-LPAEI 266
Query: 220 RGLKRLRTVDLSYNKI 235
+ L LR +DLS+N++
Sbjct: 267 KNLSNLRVLDLSHNRL 282
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 171 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
E +NL NL + L +N++TS+ + L +L Y Y N +T
Sbjct: 265 EIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT 306
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L G+T L F I + Q L+NL + L++NQIT + + L LTK+ L LS
Sbjct: 40 LDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELS 93
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
N L + I GL+ ++T+DL+ +I
Sbjct: 94 GNPLKN--VSAIAGLQSIKTLDLTSTQI 119
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 78 SLRGLTDLNWLF---LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 134
++ G+ LN L L +N++ L L L+K+ L + N L+ + S I + +L
Sbjct: 55 TIEGVQYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTL 112
Query: 135 YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS 194
+ +IT + L GL+ LQV +D NQIT + L NL +S+ N Q++ + +
Sbjct: 113 DLTSTQITDVTPL-AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL-TP 168
Query: 195 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L+ L+KL L N++++ + + L L V L N+I
Sbjct: 169 LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQI 207
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 7/151 (4%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 121
I +L + N L +++ ++ GL + L L + ++ + L LS LQ+L ++ NQ+ +
Sbjct: 87 ITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI 144
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSI 181
S + + L L N +++ L L L+KL D N+I+ + +L NL +
Sbjct: 145 -SPLAGLTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDIS--PLASLPNLIEV 200
Query: 182 SLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
L+NNQI+ + S L+ + L + L++ +T
Sbjct: 201 HLKNNQISDV-SPLANTSNLFIVTLTNQTIT 230
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDE 171
++ L ++P+ I +Q+ LY N +IT L+ G+ LT+L N+ NQ+T +
Sbjct: 26 CQERSLASVPAGIPTTTQVLHLYIN--QITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 172 FQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLK 223
F L L ++L NQ+ S+ + L L ++YL +N + DI LK
Sbjct: 84 FDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPW-DCECSDILYLK 135
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 143 SLDGLLRGL-TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTK 200
SL + G+ T QV ++ NQIT + F +L L ++L NQ+T++ + LTK
Sbjct: 30 SLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 201 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
L +L L NQL + LK L + L
Sbjct: 90 LTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 23/100 (23%)
Query: 88 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 146
L L N++ LE G +L++L L + NQL ALP G
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPV----------------------G 82
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+ LTKL + NQ+ + F NL +L I L NN
Sbjct: 83 VFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 103 GTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMD 160
G S L +E N+L++LP + +QL L + N+I SL DG+ LTKL + +
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 161 FNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHN 209
N++ + F L L ++L NQ+ S+ + LT L ++L N
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 4/110 (3%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIE 114
P + +L + N L SL + + LT L L L+ N+++SL +G L+KL +L +
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 115 QNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFN 162
+N+L++LP+ + +QL L + N++ S+ DG+ LT LQ + N
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 134 LYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM- 191
+ N+ +TS+ G+ T+L+ ++ N++ + F L L +SL NQI S+
Sbjct: 12 IRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP 68
Query: 192 NSSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRL 225
+ LTKL LYL N+L + D + LK L
Sbjct: 69 DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 68 GFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL 127
FN + ++ L +L L L +N++ L L L+K+ L + N L+ + S I
Sbjct: 54 AFNTGVTTIEGIQYLNNLIGLELKDNQITDLT-PLKNLTKITELELSGNPLKNV-SAIAG 111
Query: 128 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
+ +L + +IT + L GL+ LQV +D NQIT + L NL +S+ NNQ
Sbjct: 112 LQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNNQ 168
Query: 188 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + + L+ L+KL L N++++ + + L L V L N+I+
Sbjct: 169 VNDL-TPLANLSKLTTLRADDNKISD--ISPLASLPNLIEVHLKDNQISDV 216
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 120 ALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 178
++P+ I +Q+ LY ++N+IT L+ G+ L L+ + NQ+ + F +L L
Sbjct: 33 SVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90
Query: 179 DSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225
+ L NQ+T + S++ L L L++ N+LTE RG++RL
Sbjct: 91 TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL----PRGIERL 134
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQ 115
P + L++ N +T L + L +L L+L +N+L +L G +L++L +L +
Sbjct: 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97
Query: 116 NQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
NQL LPS + L L+ N++T L + LT L +D NQ+ + F
Sbjct: 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 175 LHNL 178
L +L
Sbjct: 158 LSSL 161
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 210
T Q+ + NQIT + F +L NL + L +NQ+ ++ + LT+L L L NQ
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKINKF 238
LT L L+ + + NK+ +
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTEL 127
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 130 QLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
QL + +NN+IT ++ G G + + + N++ V+ F+ L +L ++ L++N+I
Sbjct: 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 189 TSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
T + N S GL+ + L L NQ+T L L T++L N N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 26/130 (20%)
Query: 60 PTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 118
P +RK++ N +T + + G + +N + L +NRL++++ ++
Sbjct: 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM---------------- 100
Query: 119 EALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+ L +L +NRIT + D + GL+ +++ ++ NQIT V F LH
Sbjct: 101 ------FKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLH 153
Query: 177 NLDSISLQNN 186
+L +++L N
Sbjct: 154 SLSTLNLLAN 163
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 12/112 (10%)
Query: 88 LFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN-----NNR 140
L LNNN LE G L +L+ + N++ +DI+ + G+ N +NR
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI----TDIEEGAFEGASGVNEILLTSNR 92
Query: 141 ITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 191
+ ++ + +GL L+ + N+IT V D F L ++ +SL +NQIT++
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 27/125 (21%)
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
+L +P I ++ L NNN T L+ G+ + L +L+ N N+IT + F+
Sbjct: 22 KLNKIPEHIPQYT--AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG 79
Query: 175 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
++ I L +N++ ++ + +GL+ L+T+ L N+
Sbjct: 80 ASGVNEILLTSNRLENVQHKM-----------------------FKGLESLKTLMLRSNR 116
Query: 235 INKFG 239
I G
Sbjct: 117 ITCVG 121
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 99 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVF 157
EG LS L+ L + L +P+ L +L L + N ++++ G +GL LQ
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHN 209
M +QI ++ R+ F NL +L I+L +N +T + L + L L ++L HN
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 118 LEALPSDIQLFSQLGSLYANNN---RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
L+ +P DI L + L N+N RI+S DGL L L + NQ+T + + F+
Sbjct: 20 LKEIPRDIPLHTT--ELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEG 76
Query: 175 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
++ + L N+I + N GL +L L L NQ++ + L L +++L+ N
Sbjct: 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Query: 234 KIN 236
N
Sbjct: 137 PFN 139
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 185 NNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
NN + + +++ LT+L YLY++H ++ + D + +K L T+D SYN ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 43/194 (22%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSLRGLTDL----NWLFLNNNRLKSL-EGQLGTLSKLQLL 111
A P T +G+N + +N L + +L N++ L+ N + L E L LQ L
Sbjct: 1 ADPGTSECSVIGYNAIC-INRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFL 59
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE 171
+EQ Q L NN RGL+ L + +D+NQ +
Sbjct: 60 KVEQ--------------QTPGLVIRNNT-------FRGLSSLIILKLDYNQFLQLETGA 98
Query: 172 FQNLHNLDSISLQNNQITSMNSSLSG-----LTKLAYLYLSHN-----QLTEFLLDDIRG 221
F L NL+ ++L Q + LSG LT L L L N Q F L+
Sbjct: 99 FNGLANLEVLTL--TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN---- 152
Query: 222 LKRLRTVDLSYNKI 235
++R +DL++NK+
Sbjct: 153 MRRFHVLDLTFNKV 166
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 43/194 (22%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSLRGLTDL----NWLFLNNNRLKSL-EGQLGTLSKLQLL 111
A P T +G+N + +N L + +L N++ L+ N + L E L LQ L
Sbjct: 1 ADPGTSECSVIGYNAIC-INRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFL 59
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE 171
+EQ Q L NN RGL+ L + +D+NQ +
Sbjct: 60 KVEQ--------------QTPGLVIRNNT-------FRGLSSLIILKLDYNQFLQLETGA 98
Query: 172 FQNLHNLDSISLQNNQITSMNSSLSG-----LTKLAYLYLSHN-----QLTEFLLDDIRG 221
F L NL+ ++L Q + LSG LT L L L N Q F L+
Sbjct: 99 FNGLANLEVLTL--TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN---- 152
Query: 222 LKRLRTVDLSYNKI 235
++R +DL++NK+
Sbjct: 153 MRRFHVLDLTFNKV 166
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ--ITMVRRDEFQNLHNLDSISLQNNQI 188
+GS + + N + +GL V D ++ I + + F + +L+ ++L N+I
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311
Query: 189 TSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
++ ++ GLT L L LS N L L +L +DLSYN I G
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQ 155
L+ + L+ L + QN++ + + + L L + N + S+D + L KL+
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE 350
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHN 209
V ++ +N I + F L NL ++L NQ+ S+ + LT L ++L N
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 22/189 (11%)
Query: 57 AFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIE 114
A+ TI+KL++GFN + L + + + L L L N L SL G KL L +
Sbjct: 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149
Query: 115 QNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQV-FNMDFNQITMVRRDE 171
N LE + D Q + L +L ++NR+T +D L+ L V +N+ + +E
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 209
Query: 172 FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE--FLLDDIRGLKRLRTVD 229
HN SI++ + +L L L HN LT+ +LL+ L VD
Sbjct: 210 LDASHN--SINVVRGPVN---------VELTILKLQHNNLTDTAWLLN----YPGLVEVD 254
Query: 230 LSYNKINKF 238
LSYN++ K
Sbjct: 255 LSYNELEKI 263
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 104 TLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRGLTK-LQVFNMDF 161
TL+ +++ + + + LP+ + F Q+ L N+ +I +D +Q M F
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIR 220
N I + FQN+ L + L+ N ++S+ + KL L +S+N L D +
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162
Query: 221 GLKRLRTVDLSYNKI 235
L+ + LS N++
Sbjct: 163 ATTSLQNLQLSSNRL 177
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 28/162 (17%)
Query: 104 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN----------NRITSLDGLLRG--- 150
L +L + QL +P + ++ L L NN R+T+L LL
Sbjct: 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75
Query: 151 -----------LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGL 198
+ L+ ++ N + + F +L L+ + L NN I ++ ++ +
Sbjct: 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 199 TKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINK 237
+L LYLS NQ++ F L+ D L +L +DLS NK+ K
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 120 ALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 178
++PS L + + SL + N+IT + G LR LQV + ++I + D F +L +L
Sbjct: 19 SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 179 DSISLQNNQITSMNSSLSG-LTKLAYLYLSHN 209
+ + L +N ++S++SS G L+ L YL L N
Sbjct: 77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQ 155
L +LQ L I +N+L+ LP D LF L + + N++ S+ DG+ LT LQ
Sbjct: 450 LPRLQELYISRNKLKTLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 120 ALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 178
++PS L + + SL + N+IT + G LR LQV + ++I + D F +L +L
Sbjct: 45 SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 179 DSISLQNNQITSMNSSLSG-LTKLAYLYLSHN 209
+ + L +N ++S++SS G L+ L YL L N
Sbjct: 103 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQ 155
L +LQ L I +N+L+ LP D LF L + +N++ S+ DG+ LT LQ
Sbjct: 476 LPRLQELYISRNKLKTLP-DASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQ 526
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 57 AFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIE 114
A+ TI+KL++GFN + L + + + L L L N L SL G KL L +
Sbjct: 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155
Query: 115 QNQLEALPSD-IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQ 173
N LE + D Q + L +L ++NR+T +D L + L N+ +N ++ +
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL------ 207
Query: 174 NLHNLDSISLQNNQITSMNSSLSGL-----TKLAYLYLSHNQLTE--FLLDDIRGLKRLR 226
+I + ++ + ++S++ + +L L L HN LT+ +LL+ L
Sbjct: 208 ------AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN----YPGLV 257
Query: 227 TVDLSYNKINKF 238
VDLSYN++ K
Sbjct: 258 EVDLSYNELEKI 269
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 104 TLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRGLTK-LQVFNMDF 161
TL+ +++ + + + LP+ + F Q+ L N+ +I +D +Q M F
Sbjct: 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 108
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIR 220
N I + FQN+ L + L+ N ++S+ + KL L +S+N L D +
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168
Query: 221 GLKRLRTVDLSYNKI 235
L+ + LS N++
Sbjct: 169 ATTSLQNLQLSSNRL 183
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
TD L+LNNN++ LE G L LQ L N+L A+P+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
G+ LT+L +++ N + + R F NL +L I L NN
Sbjct: 75 ----GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 30/170 (17%)
Query: 78 SLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 137
S L L L +N+ + + G + L+ L L+ N + L D+ + L L +
Sbjct: 37 SEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACD 93
Query: 138 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 197
+N++T+LD + LTKL N D N++T + QN +T +N + +
Sbjct: 94 SNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS-------------QNPLLTYLNCARNT 138
Query: 198 LTKLAYLYLSHN-QLTEFLLD--------DIRGLKRLRTVDLSYNKINKF 238
LT++ +SHN QLTE D+ +L T+D S+NKI +
Sbjct: 139 LTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 80/195 (41%), Gaps = 25/195 (12%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 121
+ L FN +T L+ S L LN L + N + L+ L +L L N+L +
Sbjct: 172 LTTLDCSFNKITELDVSQNKL--LNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI 227
Query: 122 PSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDE---FQ---- 173
D+ +QL + N +T LD L LT L D +I + + FQ
Sbjct: 228 --DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285
Query: 174 -NLHNLDSISLQNNQITSMNSSLSGLT--------KLAYLYLSHNQLTEFLLDDIRGLKR 224
+ LD N Q+ ++ +G+T KL YLYL++ +LTE + LK
Sbjct: 286 RKIKELDVT--HNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKS 343
Query: 225 LRTVDLSYNKINKFG 239
L V+ + G
Sbjct: 344 LSCVNAHIQDFSSVG 358
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 121
+++LH+ N ++ L+ L+ LT L L +N NRLK+L G L L ++ N+L
Sbjct: 65 LKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNLNGIPSAC--LSRLFLDNNELRDT 121
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165
S I L L L NN++ S+ +L L+KL+V ++ N+IT
Sbjct: 122 DSLIHL-KNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEIT 163
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 12/139 (8%)
Query: 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRG 150
+N+ ++SL G + + L+ L + NQ+ L S ++ ++L L N NR+ +L+G+
Sbjct: 49 DNSNIQSLAG-MQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSA 106
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ 210
L +D N++ D +L NL+ +S++NN++ S+ L L+KL L L N+
Sbjct: 107 C--LSRLFLDNNELR--DTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNE 161
Query: 211 LTEFLLDDIRGLKRLRTVD 229
+T + GL RL+ V+
Sbjct: 162 IT-----NTGGLTRLKKVN 175
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 61 TIRKLHVGFNNLTS-LNNSLRGLTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQL 118
T+++L++ N T + +L ++L L L+ N L ++ LG+LSKL+ L + N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 119 EA-LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
E +P ++ L +L +DFN +T N N
Sbjct: 452 EGEIPQELMYVKTLETLI-----------------------LDFNDLTGEIPSGLSNCTN 488
Query: 178 LDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L+ ISL NN++T G L LA L LS+N + + ++ + L +DL+ N N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 51/227 (22%)
Query: 61 TIRKLHVGFNNLTS-LNNSLRGLTDLNWLFLNNNRLKS-LEGQLGTLSKLQLLVIEQNQL 118
T+ L + FN+LT + + L T+LNW+ L+NNRL + +G L L +L + N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 119 EA-LPSDI----------------------QLFSQLGSLYAN---NNRITSL--DGL--- 147
+P+++ +F Q G + AN R + DG+
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 148 ---------LRGLTKLQVFNMDF-NQITMVRR-------DEFQNLHNLDSISLQNNQITS 190
+G+ Q+ + N + R F N ++ + + N ++
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 191 -MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ + + L L L HN ++ + D++ L+ L +DLS NK++
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 27/180 (15%)
Query: 61 TIRKLHVGFNNLTS-LNNSLRGLTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQL 118
T+++L++ N T + +L ++L L L+ N L ++ LG+LSKL+ L + N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 119 EA-LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
E +P ++ L +L +DFN +T N N
Sbjct: 455 EGEIPQELMYVKTLETLI-----------------------LDFNDLTGEIPSGLSNCTN 491
Query: 178 LDSISLQNNQITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L+ ISL NN++T G L LA L LS+N + + ++ + L +DL+ N N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 51/227 (22%)
Query: 61 TIRKLHVGFNNLTS-LNNSLRGLTDLNWLFLNNNRLKS-LEGQLGTLSKLQLLVIEQNQL 118
T+ L + FN+LT + + L T+LNW+ L+NNRL + +G L L +L + N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 119 EA-LPSDI----------------------QLFSQLGSLYAN---NNRITSL--DGL--- 147
+P+++ +F Q G + AN R + DG+
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 148 ---------LRGLTKLQVFNMDF-NQITMVRR-------DEFQNLHNLDSISLQNNQITS 190
+G+ Q+ + N + R F N ++ + + N ++
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 191 -MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ + + L L L HN ++ + D++ L+ L +DLS NK++
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTD---LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN 116
P KL + LT L ++ L + L ++ RLK+ G+L SKLQ + E
Sbjct: 4 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 63
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167
+L+A ++ S+L +Y R+ + G L +KLQ + ++
Sbjct: 64 RLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAA 114
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTD---LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN 116
P KL + LT L ++ L + L ++ RLK+ G+L SKLQ + E
Sbjct: 27 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 86
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167
+L+A ++ S+L +Y + + G L +KLQ + Q+
Sbjct: 87 RLKAAVGELPEKSKLQEIYQELTELKAAVGELPEKSKLQEIYQELTQLKAA 137
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTD---LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN 116
P KL + LT L ++ L + L ++ RLK+ G+L SKLQ + E
Sbjct: 50 PEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELT 109
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 162
+L+A ++ S+L +Y ++ + G L +K Q +
Sbjct: 110 ELKAAVGELPEKSKLQEIYQELTQLKAAVGELPDQSKQQQIYQELT 155
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 163 QITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221
QI V D FQ+ H L++I L N + M +SL+G L +L+L+ ++ +
Sbjct: 67 QINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHN 126
Query: 222 LKRLRTVDLSYNKI 235
L+ L ++ L N I
Sbjct: 127 LENLESLHLGSNHI 140
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + FN L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 28 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 87
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 88 PIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 145
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 146 FSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + FN L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 87 PIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI 164
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + FN L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 111 PIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 168
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 169 FSNLTNLEHLDLSSNKIQSI 188
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + FN L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 29 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 88
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 89 PIQSL--ALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 147 FSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + FN L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 87 PIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI 164
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 23/155 (14%)
Query: 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA 120
+ L + NN+ ++ SL G+ +L L L N +K +E L+ L I NQ+ +
Sbjct: 50 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS 108
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGL--LRGLTKLQ--------VFNMDFNQ------- 163
L S I+ L LY +NN+IT+ + L L KL+ ++N D+ +
Sbjct: 109 L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEY 166
Query: 164 -ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 197
I +V+R NL LD + + ++ N + G
Sbjct: 167 RIEVVKR--LPNLKKLDGMPVDVDEREQANVARGG 199
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 21/125 (16%)
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+++A S ++ L N +I+SL G+ L++ ++ N I + +
Sbjct: 40 KMDATLSTLKACKHLALSTNNIEKISSLSGM----ENLRILSLGRNLI--------KKIE 87
Query: 177 NLDSIS-------LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTV 228
NLD+++ + NQI S+ S + L L LY+S+N++T + +D + L +L +
Sbjct: 88 NLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 146
Query: 229 DLSYN 233
L+ N
Sbjct: 147 LLAGN 151
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 23/155 (14%)
Query: 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA 120
+ L + NN+ ++ SL G+ +L L L N +K +E L+ L I NQ+ +
Sbjct: 49 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS 107
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGL--LRGLTKLQ--------VFNMDFNQ------- 163
L S I+ L LY +NN+IT+ + L L KL+ ++N D+ +
Sbjct: 108 L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN-DYKENNATSEY 165
Query: 164 -ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 197
I +V+R NL LD + + ++ N + G
Sbjct: 166 RIEVVKR--LPNLKKLDGMPVDVDEREQANVARGG 198
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 21/125 (16%)
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+++A S ++ L N +I+SL G+ L++ ++ N I + +
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKISSLSGM----ENLRILSLGRNLI--------KKIE 86
Query: 177 NLDSIS-------LQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTV 228
NLD+++ + NQI S+ S + L L LY+S+N++T + +D + L +L +
Sbjct: 87 NLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDL 145
Query: 229 DLSYN 233
L+ N
Sbjct: 146 LLAGN 150
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + FN L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 87 PIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 145 FSNLTNLEHLDLSSNKIQSI 164
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA--YLY 205
L+ L +L++ + F ++ + + F +L ++ + L +N++TS SS+ L+ L YL
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS--SSIEALSHLKGIYLN 529
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L+ N ++ L + L + RT++L N ++
Sbjct: 530 LASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
L L ++ QI + D FQ+ H LD++ L N + M ++LSG L +L+
Sbjct: 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYNKIN 236
++ + K L ++ L N I+
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHIS 142
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + +N L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 28 PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 87
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 88 PIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 145
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 146 FSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 59 PPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + + L + +N L L + S +L L L+ ++++E G +LS L L++ N
Sbjct: 29 PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 88
Query: 117 QLEALPSDIQLFSQLGSL---YANNNRITSLDGLLRG-LTKLQVFNMDFNQITMVRRDE- 171
+++L + FS L SL A + SL+ G L L+ N+ N I + E
Sbjct: 89 PIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 146
Query: 172 FQNLHNLDSISLQNNQITSM 191
F NL NL+ + L +N+I S+
Sbjct: 147 FSNLTNLEHLDLSSNKIQSI 166
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 27/120 (22%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
L+ LP I + LY + N Q T+V + E N +
Sbjct: 22 LKVLPKGIP--RDVTELYLDGN-----------------------QFTLVPK-ELSNYKH 55
Query: 178 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L I L NN+I+++ N S S +T+L L LS+N+L GLK LR + L N I+
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 23/133 (17%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQ 115
P + +L++ N T + L L + L+NNR+ +L Q +++L L++
Sbjct: 28 GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
N+L +P + F L SL R+ SL G N I++V F +L
Sbjct: 88 NRLRCIPP--RTFDGLKSL-----RLLSLHG---------------NDISVVPEGAFNDL 125
Query: 176 HNLDSISLQNNQI 188
L +++ N +
Sbjct: 126 SALSHLAIGANPL 138
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 29/97 (29%)
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYL 204
G+ R +T+L +D NQ T+V + E N +L I L NN+I+++ N S S +T+L
Sbjct: 28 GIPRDVTELY---LDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL-- 81
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 241
T+ LSYN++ R
Sbjct: 82 ----------------------TLILSYNRLRCIPPR 96
>pdb|3PJE|A Chain A, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
pdb|3PJE|B Chain B, Structure Of Enr G93s Mutant-Nad+-Triclosan Complex
Length = 270
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
R++ QLG+ LQ V E ++ +F++LG ++ DG + +
Sbjct: 45 KGRVEEFAAQLGSDIVLQCDVAEDASID------TMFAELGKVWPK------FDGFVHSI 92
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISL--QNNQITSMNSSLSGLTKLAYL 204
+ +D + + V R+ F+ H++ S S SM + S L L+YL
Sbjct: 93 SFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYL 147
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 17/144 (11%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQL 118
P+I LH NN++ ++ S RG N ++L NN++ L G S++Q L ++ N++
Sbjct: 99 PSIETLHAANNNISRVSCS-RGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 119 EALPSDIQLFSQLGS-------LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE 171
+ + F++L + L N I + G + KL+ ++ N++ + E
Sbjct: 157 DTVN-----FAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMG-PE 209
Query: 172 FQNLHNLDSISLQNNQITSMNSSL 195
FQ+ + ISL+NN++ + +L
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKAL 233
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 173 QNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
Q+ N+ + L N ++ ++++ L+ TKL L LS N L E L D+ L LRT+DL+
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLN 88
Query: 232 YNKINKF 238
N + +
Sbjct: 89 NNYVQEL 95
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
L L ++ QI + D FQ+ H L ++ L N + M +SL+G L +L+L
Sbjct: 53 LMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQT 112
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYNKIN 236
++ + L+ L ++ L N I+
Sbjct: 113 GISNLEFIPVHNLENLESLYLGSNHIS 139
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 17/144 (11%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQL 118
P+I LH NN++ ++ S RG N ++L NN++ L G S++Q L ++ N++
Sbjct: 99 PSIETLHAANNNISRVSCS-RGQGKKN-IYLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 119 EALPSDIQLFSQLGS-------LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE 171
+ + F++L + L N I + G + KL+ ++ N++ + E
Sbjct: 157 DTVN-----FAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMG-PE 209
Query: 172 FQNLHNLDSISLQNNQITSMNSSL 195
FQ+ + ISL+NN++ + +L
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKAL 233
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 173 QNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
Q+ N+ + L N ++ ++++ L+ TKL L LS N L E L D+ L LRT+DL+
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLN 88
Query: 232 YNKINKF 238
N + +
Sbjct: 89 NNYVQEL 95
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
++L ++ FN I+ + + Q L L ++LQ+N+++ + + + + T L L+L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKIN--KFGTR 241
+ + + K L T+DLS+N ++ K GT+
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
D + L L+ NM+ N I ++ + F L NL +SL N+ +SL LT ++
Sbjct: 332 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 386
Query: 205 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 245
L+H N++++ D L L +DL N+I + T E +
Sbjct: 387 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 437
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 77 NSLRGLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQL 131
N GL +L +L L+N+ L++L + S L +L + +N++ + SD FS L
Sbjct: 357 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWL 414
Query: 132 GSLYANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
G L + + + L RGL + + +N+ + R+ F + +L + L+
Sbjct: 415 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 474
Query: 187 QITSMNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
+ +++SS S L L L LS+N + D + GL++L +DL +N + +
Sbjct: 475 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 528
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 31/128 (24%)
Query: 79 LRGLTDLNWLFLNNNRLKSLEGQ---------LGTLSKLQLLVIEQNQLEALPSDIQLFS 129
L GL L L L +N L L L LS L +L +E N + +P ++
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV---- 565
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
+ L +L++ ++ N + + F N +L S++LQ N IT
Sbjct: 566 ------------------FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 607
Query: 190 SMNSSLSG 197
S+ + G
Sbjct: 608 SVEKKVFG 615
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
++L ++ FN I+ + + Q L L ++LQ+N+++ + + + + T L L+L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKIN--KFGTR 241
+ + + K L T+DLS+N ++ K GT+
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
D + L L+ NM+ N I ++ + F L NL +SL N+ +SL LT ++
Sbjct: 327 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 381
Query: 205 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 245
L+H N++++ D L L +DL N+I + T E +
Sbjct: 382 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 432
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 77 NSLRGLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQL 131
N GL +L +L L+N+ L++L + S L +L + +N++ + SD FS L
Sbjct: 352 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWL 409
Query: 132 GSLYANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
G L + + + L RGL + + +N+ + R+ F + +L + L+
Sbjct: 410 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 469
Query: 187 QITSMNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
+ +++SS S L L L LS+N + D + GL++L +DL +N + +
Sbjct: 470 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 523
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 31/128 (24%)
Query: 79 LRGLTDLNWLFLNNNRLKSLEGQ---------LGTLSKLQLLVIEQNQLEALPSDIQLFS 129
L GL L L L +N L L L LS L +L +E N + +P ++
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV---- 560
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
+ L +L++ ++ N + + F N +L S++LQ N IT
Sbjct: 561 ------------------FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 602
Query: 190 SMNSSLSG 197
S+ + G
Sbjct: 603 SVEKKVFG 610
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
++L ++ FN I+ + + Q L L ++LQ+N+++ + + + + T L L+L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKIN--KFGTR 241
+ + + K L T+DLS+N ++ K GT+
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
D + L L+ NM+ N I ++ + F L NL +SL N+ +SL LT ++
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF-----TSLRTLTNETFV 376
Query: 205 YLSH----------NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEGK 245
L+H N++++ D L L +DL N+I + T E +
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%)
Query: 77 NSLRGLTDLNWLFLNNN--RLKSLEGQLGTL---SKLQLLVIEQNQLEALPSDIQLFSQL 131
N GL +L +L L+N+ L++L + S L +L + +N++ + SD FS L
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWL 404
Query: 132 GSLYANNNRITSLDGLL-----RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
G L + + + L RGL + + +N+ + R+ F + +L + L+
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464
Query: 187 QITSMNSSLSG---LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
+ +++SS S L L L LS+N + D + GL++L +DL +N + +
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 31/128 (24%)
Query: 79 LRGLTDLNWLFLNNNRLKSLEGQ---------LGTLSKLQLLVIEQNQLEALPSDIQLFS 129
L GL L L L +N L L L LS L +L +E N + +P ++
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV---- 555
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
+ L +L++ ++ N + + F N +L S++LQ N IT
Sbjct: 556 ------------------FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 190 SMNSSLSG 197
S+ + G
Sbjct: 598 SVEKKVFG 605
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 71 NLTSLNNSLRGLTD---------LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 121
+L SLN S LTD + L L++N++KS+ Q+ L LQ L + NQL+++
Sbjct: 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSV 459
Query: 122 PSDIQLFSQLGSL 134
P I F +L SL
Sbjct: 460 PDGI--FDRLTSL 470
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
K L +S N ++E DI L +LR + +S+N+I
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRI 57
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 135 YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NS 193
Y N+I D GL LQV N+ +N + + F L + I LQ N I + +
Sbjct: 299 YNKINKIA--DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356
Query: 194 SLSGLTKLAYLYLSHNQLT 212
+ L KL L L N LT
Sbjct: 357 TFKFLEKLQTLDLRDNALT 375
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 58 FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQ 115
F P+I + + N L +L LT N + L+ NRL++L+ L + LQ+L++ Q
Sbjct: 379 FIPSIPDIFLSGNKLVTLPKI--NLTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQ 435
Query: 116 NQLEAL---------PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166
N+ + PS QLF L D + GL+ LQV ++ N +
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD-VFEGLSHLQVLYLNHNYLNS 494
Query: 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
+ F +L L +SL +N++T ++ + L L +S NQL L + L
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHN-DLPANLEILDISRNQL---LAPNPDVFVSLS 550
Query: 227 TVDLSYNKI 235
+D+++NK
Sbjct: 551 VLDITHNKF 559
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 22/177 (12%)
Query: 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA 120
++R L + FN ++ + GL +L L ++ LK + LS +LL ++
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD------ 430
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLD 179
+ N +I DG+ GLT L M N + F N NL
Sbjct: 431 -------------ISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476
Query: 180 SISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ L Q+ ++ + L +L L +SHN L L L T+D S+N+I
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 131 LGSLYANNNRITSLD-----------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
L +++AN +T LD G+ L +LQ+ NM N + + + L++L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 180 SISLQNNQITSMNSSLSGLTK-LAYLYLSHNQLT 212
++ N+I + L K LA+ L++N +
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 22/177 (12%)
Query: 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA 120
++R L + FN ++ + GL +L L ++ LK + LS +LL ++
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLD------ 425
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLD 179
+ N +I DG+ GLT L M N + F N NL
Sbjct: 426 -------------ISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 471
Query: 180 SISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ L Q+ ++ + L +L L +SHN L L L T+D S+N+I
Sbjct: 472 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 528
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 131 LGSLYANNNRITSLD-----------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD 179
L +++AN +T LD G+ L +LQ+ NM N + + + L++L
Sbjct: 460 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 519
Query: 180 SISLQNNQITSMNSSLSGLTK-LAYLYLSHNQLT 212
++ N+I + L K LA+ L++N +
Sbjct: 520 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 553
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 178 LDSISLQNNQI-TSMNSSLSGL--TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
+ ++SL NNQ+ + S+ SGL T L L LS+N L + L LR + L YN
Sbjct: 224 IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNN 283
Query: 235 INKFGTR 241
I + R
Sbjct: 284 IQRLSPR 290
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
++L + + FN I+ + + Q L L ++LQ+N+++ + + + T L L L N
Sbjct: 49 SQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNS 108
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKIN--KFGT 240
+ + + + K L +DLS+N ++ K GT
Sbjct: 109 IHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGT 140
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 134
L+NNR+ S+ + L LQ L + NQL+++P + F +L SL
Sbjct: 457 LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGV--FDRLTSL 499
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 71 NLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFS 129
++T +N L + D + N L + L +K L + QN + L DI S
Sbjct: 24 SMTPFSNELESMVDYS-----NRNLTHVPKDLPPRTKA--LSLSQNSISELRMPDISFLS 76
Query: 130 QLGSLYANNNRITSLDGLLRGLTK-LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
+L L ++NRI SLD + + L+ ++ N++ + +L +LD +S + +
Sbjct: 77 ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLD-LSFNDFDV 135
Query: 189 TSMNSSLSGLTKLAYLYLS 207
+ LTKL +L LS
Sbjct: 136 LPVCKEFGNLTKLTFLGLS 154
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 57 AFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQ 115
PP ++ L + N + S+ + L L L + +N+LKS+ +G L+ LQ + +
Sbjct: 447 CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Query: 116 NQLEALPSDIQLFSQ 130
N + I+ S+
Sbjct: 507 NPWDCTCPGIRYLSE 521
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 178 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ S+ L NN+IT + NS L L L L+ N + D L L +DLSYN ++
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 237 KFGT 240
+
Sbjct: 88 NLSS 91
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 178 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ S+ L NN+IT + NS L L L L+ N + D L L +DLSYN ++
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 237 KFGT 240
+
Sbjct: 114 NLSS 117
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL-----------L 148
G+ L LQ L +E + +LP+ I L SL N+ +++L L
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYL 204
RG T L+ + F ++R ++ NL ++ L +++T + L G L+ L
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,267,154
Number of Sequences: 62578
Number of extensions: 220792
Number of successful extensions: 1163
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 356
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)