Query psy4258
Match_columns 245
No_of_seqs 148 out of 2224
Neff 10.9
Searched_HMMs 46136
Date Fri Aug 16 20:47:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194|consensus 99.9 1.1E-26 2.4E-31 187.1 5.1 232 8-241 97-335 (873)
2 KOG4194|consensus 99.9 7.8E-27 1.7E-31 187.9 1.7 230 13-243 173-436 (873)
3 PLN00113 leucine-rich repeat r 99.9 8.9E-25 1.9E-29 197.0 15.0 225 11-236 91-321 (968)
4 PLN00113 leucine-rich repeat r 99.9 1.5E-24 3.3E-29 195.5 14.6 226 10-236 137-369 (968)
5 KOG0444|consensus 99.9 1.7E-23 3.7E-28 170.6 -2.8 222 11-236 53-304 (1255)
6 KOG0472|consensus 99.8 2.8E-24 6E-29 166.3 -8.2 228 10-242 65-294 (565)
7 KOG0444|consensus 99.8 6E-23 1.3E-27 167.4 -4.7 199 11-211 76-303 (1255)
8 PRK15370 E3 ubiquitin-protein 99.8 2.9E-20 6.3E-25 160.1 10.8 214 4-238 190-403 (754)
9 PRK15387 E3 ubiquitin-protein 99.8 4.7E-19 1E-23 152.2 13.1 214 4-238 213-460 (788)
10 KOG4237|consensus 99.8 3.7E-21 8E-26 148.7 -0.4 233 3-236 57-359 (498)
11 PRK15370 E3 ubiquitin-protein 99.8 2.5E-19 5.4E-24 154.4 8.6 215 4-237 211-429 (754)
12 KOG0472|consensus 99.8 2.1E-22 4.5E-27 156.1 -9.3 223 11-238 89-312 (565)
13 KOG0617|consensus 99.8 1.3E-20 2.9E-25 130.4 -4.4 178 34-212 29-212 (264)
14 KOG0617|consensus 99.7 5.1E-20 1.1E-24 127.6 -3.3 153 60-213 33-187 (264)
15 KOG0618|consensus 99.7 2.9E-19 6.3E-24 151.1 -1.5 195 39-235 242-464 (1081)
16 KOG0618|consensus 99.7 1.5E-19 3.3E-24 152.8 -3.9 224 11-238 239-491 (1081)
17 PLN03210 Resistant to P. syrin 99.7 3.3E-16 7.2E-21 142.9 17.2 217 11-233 609-903 (1153)
18 PRK15387 E3 ubiquitin-protein 99.7 4.2E-17 9.1E-22 140.3 8.9 124 83-219 342-465 (788)
19 PLN03210 Resistant to P. syrin 99.7 1.3E-15 2.7E-20 139.2 17.3 152 9-163 554-715 (1153)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-17 3.1E-22 132.5 3.6 228 11-239 21-294 (319)
21 KOG4237|consensus 99.6 1.1E-17 2.3E-22 129.7 -1.4 209 3-212 78-359 (498)
22 cd00116 LRR_RI Leucine-rich re 99.6 1.2E-16 2.5E-21 127.3 4.3 224 11-235 49-319 (319)
23 KOG0532|consensus 99.6 1E-16 2.3E-21 129.6 -2.5 213 16-233 53-270 (722)
24 KOG0532|consensus 99.4 1.7E-15 3.8E-20 122.6 -4.8 195 43-241 55-252 (722)
25 COG4886 Leucine-rich repeat (L 99.4 1.9E-13 4.2E-18 112.0 6.1 176 60-238 116-292 (394)
26 COG4886 Leucine-rich repeat (L 99.4 4.1E-13 8.8E-18 110.1 7.0 180 36-217 114-295 (394)
27 KOG1909|consensus 99.4 3.9E-14 8.3E-19 108.5 -0.3 225 11-236 28-311 (382)
28 KOG1259|consensus 99.3 3.8E-13 8.1E-18 101.7 2.5 133 104-239 282-415 (490)
29 KOG3207|consensus 99.3 1.3E-13 2.7E-18 108.7 -0.5 154 11-165 119-284 (505)
30 PF14580 LRR_9: Leucine-rich r 99.3 1.8E-12 3.9E-17 92.8 4.6 58 39-97 20-78 (175)
31 KOG3207|consensus 99.3 6E-13 1.3E-17 104.9 2.2 203 36-238 119-341 (505)
32 PF14580 LRR_9: Leucine-rich r 99.3 2.9E-12 6.2E-17 91.8 5.3 123 11-136 17-147 (175)
33 KOG1259|consensus 99.3 9.8E-13 2.1E-17 99.5 0.4 177 35-214 211-414 (490)
34 KOG1909|consensus 99.2 2.9E-12 6.2E-17 98.4 -0.1 179 34-212 88-311 (382)
35 KOG0531|consensus 99.0 4E-11 8.6E-16 98.8 -1.4 127 13-143 72-200 (414)
36 PF13855 LRR_8: Leucine rich r 99.0 1.2E-09 2.5E-14 64.7 5.2 58 13-71 1-60 (61)
37 PF13855 LRR_8: Leucine rich r 99.0 7.7E-10 1.7E-14 65.5 4.5 59 177-235 2-61 (61)
38 KOG0531|consensus 98.9 4.8E-10 1E-14 92.4 0.6 222 10-238 92-320 (414)
39 KOG4658|consensus 98.8 4.3E-09 9.4E-14 93.2 5.5 126 38-163 523-653 (889)
40 PLN03150 hypothetical protein; 98.8 2.1E-08 4.6E-13 86.6 7.9 104 131-234 420-526 (623)
41 KOG4658|consensus 98.7 6.3E-09 1.4E-13 92.2 3.3 126 11-139 521-652 (889)
42 KOG1859|consensus 98.7 1.5E-10 3.2E-15 97.2 -7.5 129 106-237 164-293 (1096)
43 KOG4579|consensus 98.7 1E-09 2.3E-14 73.8 -2.6 126 39-164 28-158 (177)
44 COG5238 RNA1 Ran GTPase-activa 98.7 3.2E-09 6.9E-14 79.6 -0.5 227 12-239 29-319 (388)
45 COG5238 RNA1 Ran GTPase-activa 98.6 6.5E-09 1.4E-13 78.0 0.1 201 36-236 28-285 (388)
46 KOG2982|consensus 98.6 2.2E-08 4.7E-13 76.2 2.5 63 151-213 198-263 (418)
47 PLN03150 hypothetical protein; 98.6 7.2E-08 1.6E-12 83.3 6.0 84 154-237 420-504 (623)
48 KOG2982|consensus 98.6 1.3E-08 2.8E-13 77.4 0.3 178 60-237 71-263 (418)
49 KOG1859|consensus 98.5 7.1E-10 1.5E-14 93.2 -7.8 100 61-163 165-265 (1096)
50 KOG4579|consensus 98.5 2.9E-09 6.2E-14 71.7 -4.0 87 106-193 53-140 (177)
51 KOG2120|consensus 98.5 2.7E-09 5.9E-14 80.9 -5.5 80 15-95 187-272 (419)
52 KOG2120|consensus 98.5 6.1E-09 1.3E-13 79.1 -3.7 172 60-233 185-373 (419)
53 PRK15386 type III secretion pr 98.4 1.9E-06 4.2E-11 69.6 8.7 130 36-186 50-187 (426)
54 PF12799 LRR_4: Leucine Rich r 98.4 8.4E-07 1.8E-11 48.3 4.1 39 61-99 2-40 (44)
55 PF12799 LRR_4: Leucine Rich r 98.4 7.7E-07 1.7E-11 48.4 3.9 39 200-239 2-40 (44)
56 KOG1644|consensus 98.3 8.4E-07 1.8E-11 63.9 4.7 101 60-161 42-149 (233)
57 KOG1644|consensus 98.3 1.4E-06 2.9E-11 62.8 4.8 122 85-208 21-149 (233)
58 PRK15386 type III secretion pr 98.2 7.9E-06 1.7E-10 66.1 8.3 133 60-210 52-188 (426)
59 PF13306 LRR_5: Leucine rich r 98.2 1.3E-05 2.9E-10 54.9 7.7 102 8-115 7-112 (129)
60 KOG3665|consensus 97.8 1.4E-05 3.1E-10 69.6 3.1 129 60-189 122-263 (699)
61 PF13306 LRR_5: Leucine rich r 97.8 0.00015 3.3E-09 49.6 7.6 62 29-92 3-67 (129)
62 KOG3665|consensus 97.8 1.3E-05 2.8E-10 69.9 2.5 131 83-214 122-265 (699)
63 KOG4341|consensus 97.6 1.1E-06 2.4E-11 69.9 -6.2 79 15-93 140-226 (483)
64 KOG2123|consensus 97.4 6.1E-06 1.3E-10 62.6 -3.7 101 126-229 16-123 (388)
65 KOG2123|consensus 97.3 9.9E-06 2.2E-10 61.5 -3.9 99 36-135 17-123 (388)
66 KOG2739|consensus 97.1 0.00041 8.9E-09 52.2 3.2 103 37-139 42-153 (260)
67 KOG2739|consensus 97.1 0.00012 2.7E-09 55.0 0.4 82 60-142 43-129 (260)
68 KOG4341|consensus 97.0 3.6E-05 7.7E-10 61.6 -3.9 83 11-93 162-252 (483)
69 KOG1947|consensus 96.7 0.00019 4.1E-09 60.5 -1.8 106 12-117 187-306 (482)
70 PF00560 LRR_1: Leucine Rich R 96.2 0.004 8.7E-08 28.1 1.8 16 62-77 2-17 (22)
71 PF00560 LRR_1: Leucine Rich R 96.0 0.0034 7.3E-08 28.4 1.1 20 84-103 1-20 (22)
72 KOG3864|consensus 95.5 0.0028 6E-08 46.1 -0.6 81 152-232 101-185 (221)
73 KOG4308|consensus 95.4 8.8E-05 1.9E-09 62.0 -9.9 37 200-236 263-303 (478)
74 PF13504 LRR_7: Leucine rich r 95.4 0.011 2.4E-07 24.8 1.2 15 224-238 2-16 (17)
75 KOG4308|consensus 95.3 0.00016 3.5E-09 60.5 -8.6 175 40-214 89-305 (478)
76 KOG1947|consensus 94.8 0.0031 6.8E-08 53.1 -2.4 104 60-163 188-306 (482)
77 KOG3864|consensus 93.8 0.0069 1.5E-07 44.2 -2.0 78 15-93 103-186 (221)
78 smart00370 LRR Leucine-rich re 93.8 0.044 9.6E-07 25.7 1.5 20 224-243 3-22 (26)
79 smart00369 LRR_TYP Leucine-ric 93.8 0.044 9.6E-07 25.7 1.5 20 224-243 3-22 (26)
80 PF13516 LRR_6: Leucine Rich r 92.9 0.051 1.1E-06 24.9 0.9 21 199-219 2-22 (24)
81 KOG0473|consensus 89.8 0.0064 1.4E-07 45.4 -6.0 81 60-140 42-122 (326)
82 KOG0473|consensus 87.5 0.0083 1.8E-07 44.9 -6.7 93 26-119 30-124 (326)
83 smart00364 LRR_BAC Leucine-ric 86.9 0.45 9.7E-06 22.3 1.2 18 223-240 2-19 (26)
84 smart00365 LRR_SD22 Leucine-ri 83.0 1.3 2.8E-05 20.8 1.9 18 223-240 2-19 (26)
85 smart00368 LRR_RI Leucine rich 82.6 0.99 2.1E-05 21.5 1.4 17 199-215 2-18 (28)
86 smart00367 LRR_CC Leucine-rich 78.8 1.2 2.7E-05 20.6 1.0 15 13-27 2-16 (26)
87 PF05725 FNIP: FNIP Repeat; I 65.9 9.4 0.0002 20.3 2.7 30 39-68 13-42 (44)
88 KOG3763|consensus 62.6 3.7 8E-05 35.1 1.0 63 150-213 216-284 (585)
89 KOG3763|consensus 50.9 8.9 0.00019 32.9 1.4 62 174-237 216-284 (585)
No 1
>KOG4194|consensus
Probab=99.93 E-value=1.1e-26 Score=187.06 Aligned_cols=232 Identities=25% Similarity=0.374 Sum_probs=154.0
Q ss_pred ccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCC
Q psy4258 8 EDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTD 84 (245)
Q Consensus 8 ~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~ 84 (245)
.+.++++|+++.+.. |.++.++. .-....+++.|++.+|.|+++....+. +.|+.|+|+.|.+.+++ .+|..-.+
T Consensus 97 ~f~nl~nLq~v~l~~-N~Lt~IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNK-NELTRIPR-FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHhcCCcceeeeecc-chhhhccc-ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 344666666666666 66665543 112234566666666666666544443 67777777777777666 55666677
Q ss_pred CcEEEeeccccCCcc-ccccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCch-hhhcCCCCCcEEecCC
Q psy4258 85 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 161 (245)
Q Consensus 85 L~~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~ 161 (245)
+++|++++|.++++. +.|.++.+|..+.+++|+++.+|.. +.++++|+.|++..|+++... -.+..+++++.|.+..
T Consensus 175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred ceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 777777777777653 4566667777777888877777654 555777888887777776542 3456666777777777
Q ss_pred CccccccCccCCCCCCCCEEEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 162 ~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
|.+.......|..+.++++|++..|.++.+. .++.++..|+.|++++|.|..+-+..+..+++|+.|++++|.++.+++
T Consensus 255 N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 255 NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence 7776666666667777777777777776553 455666777777777777776666666667777777777777766665
Q ss_pred C
Q psy4258 241 R 241 (245)
Q Consensus 241 ~ 241 (245)
.
T Consensus 335 ~ 335 (873)
T KOG4194|consen 335 G 335 (873)
T ss_pred h
Confidence 4
No 2
>KOG4194|consensus
Probab=99.92 E-value=7.8e-27 Score=187.93 Aligned_cols=230 Identities=27% Similarity=0.434 Sum_probs=167.9
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCC--------------------
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFN-------------------- 70 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~-------------------- 70 (245)
.++++|+|.+ |+++.+....|.++++|..|.+++|.++.++...|. ++|+.|+|..|
T Consensus 173 ~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 3466666666 666666666666666666666666666666555554 45555555544
Q ss_pred ----ccccch-hhhcCCCCCcEEEeeccccCCcc-ccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCC
Q psy4258 71 ----NLTSLN-NSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITS 143 (245)
Q Consensus 71 ----~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~ 143 (245)
++..+. ++|..+.++++|+++.|.+..+. .++.++..|+.|+++.|.+..+ ++.+..+++|+.|+++.|+++.
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 444333 55666677777777777766553 4566778888888888877755 4567777888888888888888
Q ss_pred ch-hhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccc----ccccccCCCCccEEEcCCCcccccchhh
Q psy4258 144 LD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MNSSLSGLTKLAYLYLSHNQLTEFLLDD 218 (245)
Q Consensus 144 ~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 218 (245)
++ ..+..+..|++|+++.|.++.+....|.++++|+.|++..|.+.. -...+..+++|+.|.+.||++..+...+
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 75 456677888888888888888777788888889999998888772 2345677899999999999999988889
Q ss_pred hcCCCcccEEEccCCCCcccccCCC
Q psy4258 219 IRGLKRLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 219 l~~~~~L~~l~l~~n~l~~~~~~~~ 243 (245)
+.+++.|+.||+.+|.|..+.+..|
T Consensus 412 fsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred hccCcccceecCCCCcceeeccccc
Confidence 9999999999999999988865543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=8.9e-25 Score=196.99 Aligned_cols=225 Identities=25% Similarity=0.350 Sum_probs=146.4
Q ss_pred ccccccEEeeCCCCCce-ecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccc-cchhhhcCCCCCcEE
Q psy4258 11 HAVALNLIDLEPETGSH-PLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLT-SLNNSLRGLTDLNWL 88 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~-~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L 88 (245)
.+++|+.|++++ +.+. .++...+..+++|+.|++++|.+.+..+....++|++|++++|.+. .+|..+..+++|++|
T Consensus 91 ~l~~L~~L~Ls~-n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 91 RLPYIQTINLSN-NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCCEEECCC-CccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 577788888888 7775 3444445577788888888877654433333477888888887776 566777778888888
Q ss_pred EeeccccC-CccccccCCCCccEEEecccccc-cCChhhhcccccceeecccCcCC-CchhhhcCCCCCcEEecCCCccc
Q psy4258 89 FLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFNQIT 165 (245)
Q Consensus 89 ~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~~~l~ 165 (245)
++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|+.|++..|.+. .+|..+..+++|++|++++|.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 88887764 56667777777778877777665 45666777777777777777665 35666666677777777766665
Q ss_pred cccCccCCCCCCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 166 MVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
...+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++
T Consensus 250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 544555666666666666666554 34444555555555555555555545555555555555555555443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1.5e-24 Score=195.48 Aligned_cols=226 Identities=23% Similarity=0.338 Sum_probs=126.9
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccc-cchhhhcCCCCCc
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT-SLNNSLRGLTDLN 86 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~~~~~~~~~L~ 86 (245)
..+++|++|++++ +.+....+..+..+++|+.|++++|.+....+..+. ++|++|++++|.+. .+|..+..+.+|+
T Consensus 137 ~~l~~L~~L~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 137 GSIPNLETLDLSN-NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred cccCCCCEEECcC-CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 3445555555555 455444444455555666666665554433322222 55666666665554 3455555566666
Q ss_pred EEEeeccccC-CccccccCCCCccEEEecccccc-cCChhhhcccccceeecccCcCCC-chhhhcCCCCCcEEecCCCc
Q psy4258 87 WLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 87 ~L~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~ 163 (245)
+|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++..|.+.+ +|..+..+++|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 6666665554 34555555666666666666554 445555566666666666665542 44555555666666666665
Q ss_pred cccccCccCCCCCCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 164 ITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 164 l~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..|..++.+++|+.+++++|.++
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 55444455555566666666666555 34445555666666666666666555556666666666666666554
No 5
>KOG0444|consensus
Probab=99.85 E-value=1.7e-23 Score=170.59 Aligned_cols=222 Identities=26% Similarity=0.379 Sum_probs=146.6
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeecccccc--ccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNI--THIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNW 87 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i--~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 87 (245)
.+.+|++|.+.. |.+..+..+ ++.++.|+.+.+..|.+ +++|+..|. ..|+.|+++.|.++++|..+....++-.
T Consensus 53 ~lqkLEHLs~~H-N~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 53 RLQKLEHLSMAH-NQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHhhhhhhhhhh-hhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 677888888888 887777543 67778888888887764 345666555 7888888888888888877777788888
Q ss_pred EEeeccccCCcccc-ccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCch-hhhcCCCCCcEEecC-----
Q psy4258 88 LFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD----- 160 (245)
Q Consensus 88 L~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~----- 160 (245)
|.++.|+|.++|.. +-++..|-.|++++|++..+|+.+..+..|++|.+++|.+..+. ..+..+++|++|+++
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 88888888888754 44567788888888888888888888888888888888655431 223334444444444
Q ss_pred --------------------CCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhc
Q psy4258 161 --------------------FNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR 220 (245)
Q Consensus 161 --------------------~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 220 (245)
.|.+..++ ..+..+++|+.|++++|.++++.-....+.++++|++++|+++. +|.+++
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~-LP~avc 288 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV-LPDAVC 288 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc-chHHHh
Confidence 44443332 23334455555555555555544444445555555555555555 455566
Q ss_pred CCCcccEEEccCCCCc
Q psy4258 221 GLKRLRTVDLSYNKIN 236 (245)
Q Consensus 221 ~~~~L~~l~l~~n~l~ 236 (245)
.+++|+.|.+.+|+++
T Consensus 289 KL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLT 304 (1255)
T ss_pred hhHHHHHHHhccCccc
Confidence 6666666655555543
No 6
>KOG0472|consensus
Probab=99.85 E-value=2.8e-24 Score=166.33 Aligned_cols=228 Identities=29% Similarity=0.358 Sum_probs=197.4
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEE
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 88 (245)
.+++.+..+++.. +.+...++ +...+.+++.++++.+.+..++..... ..+.+++.+.|.+..+++.+..+..+..+
T Consensus 65 ~nL~~l~vl~~~~-n~l~~lp~-aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 65 KNLACLTVLNVHD-NKLSQLPA-AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hcccceeEEEecc-chhhhCCH-HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhh
Confidence 4677788888888 88877754 356677888889998888888765444 78899999999999999999999999999
Q ss_pred EeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcccccc
Q psy4258 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 168 (245)
Q Consensus 89 ~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~ 168 (245)
+..+|++.++|+.+.++.++..+++.+|.+..+|+..-+++.|+++++..|-+..+|+.++.+.++.-|++..|.+...|
T Consensus 143 ~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 143 DATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred hccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC
Confidence 99999999999999999999999999999999988877899999999999999999999999999999999999988775
Q ss_pred CccCCCCCCCCEEEccCCcccccccccc-CCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCC
Q psy4258 169 RDEFQNLHNLDSISLQNNQITSMNSSLS-GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
.|++|..|+.++++.|.+..+|.+.. +++++..||+..|++++ .|..++-+++|..||+++|.++.+++..
T Consensus 223 --ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 223 --EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred --CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCccccCCccc
Confidence 68888999999999999998887654 88899999999999998 4777888889999999999999888654
No 7
>KOG0444|consensus
Probab=99.83 E-value=6e-23 Score=167.43 Aligned_cols=199 Identities=28% Similarity=0.379 Sum_probs=123.2
Q ss_pred ccccccEEeeCCCCCceec-CCCCCCCCcccceeeccccccccccCC-CCCCcccEEEecCCccccchhh-hcCCCCCcE
Q psy4258 11 HAVALNLIDLEPETGSHPL-TSDDLKGTPALITLLLVNNNITHIHEN-AFPPTIRKLHVGFNNLTSLNNS-LRGLTDLNW 87 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~-~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 87 (245)
.+|.|+.+++.. |++..- .|..+..+..|+.||++.|.+++.|.. ..++++-.|++++|++..+|.. |.++..|-+
T Consensus 76 ~Lp~LRsv~~R~-N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRD-NNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhc-cccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 566777777777 666422 233444577777777777777776643 2225666677777777766633 356666666
Q ss_pred EEeeccccCCccccccCCCCccEEEecccccc--------------------------cCChhhhcccccceeecccCcC
Q psy4258 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE--------------------------ALPSDIQLFSQLGSLYANNNRI 141 (245)
Q Consensus 88 L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~--------------------------~~~~~~~~~~~L~~l~l~~~~~ 141 (245)
|++++|.+..+|+.+..+..|++|.+++|.+. .+|..+..+.+|..++++.|.+
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L 234 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL 234 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC
Confidence 67777666666655555555555555544321 2344455566677777777777
Q ss_pred CCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcc
Q psy4258 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211 (245)
Q Consensus 142 ~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l 211 (245)
..+|+.+..+.+|+.|++++|.++.+.. ..+.+.++++|+++.|.++.+|..+..+++|+.|.+.+|++
T Consensus 235 p~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 235 PIVPECLYKLRNLRRLNLSGNKITELNM-TEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred CcchHHHhhhhhhheeccCcCceeeeec-cHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcc
Confidence 7777777777777777777777665432 23344566666666666666666666666666666666544
No 8
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.9e-20 Score=160.13 Aligned_cols=214 Identities=22% Similarity=0.336 Sum_probs=140.4
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCC
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLT 83 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 83 (245)
++.+|..-.++++.|++++ |+++.++...+ ++|+.|++++|.++.++.. ++++|+.|++++|.+..+|..+. .
T Consensus 190 LtsLP~~Ip~~L~~L~Ls~-N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~-l~~~L~~L~Ls~N~L~~LP~~l~--s 262 (754)
T PRK15370 190 LTTIPACIPEQITTLILDN-NELKSLPENLQ---GNIKTLYANSNQLTSIPAT-LPDTIQEMELSINRITELPERLP--S 262 (754)
T ss_pred cCcCCcccccCCcEEEecC-CCCCcCChhhc---cCCCEEECCCCccccCChh-hhccccEEECcCCccCcCChhHh--C
Confidence 4455655567899999999 88888765433 4789999999988887653 45789999999998888886654 5
Q ss_pred CCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCc
Q psy4258 84 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 84 ~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~ 163 (245)
+|+.|++++|.+..+|..+. ++|+.|++++|.+..+|..+. ++|+.|++.+|.+..+|..+. ++|+.|++++|.
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~ 336 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENA 336 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCc
Confidence 78899999988888876554 578889998888887765432 356667777776666654332 456666666666
Q ss_pred cccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 164 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 164 l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
++.++. .+. ++|+.|++++|.+..+|..+ .++|+.|++++|.++.. |..+. ..|+.|++++|+++.+
T Consensus 337 Lt~LP~-~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~L-P~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 337 LTSLPA-SLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNL-PENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred cccCCh-hhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCC-CHhHH--HHHHHHhhccCCcccC
Confidence 655432 221 45666666666666555433 24566666666665553 22221 1344444444444443
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=4.7e-19 Score=152.19 Aligned_cols=214 Identities=29% Similarity=0.303 Sum_probs=118.8
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhc---
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLR--- 80 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--- 80 (245)
+..+|..-.++|+.|++.. |.++.++. ..++|+.|++++|.++.++. ++++|+.|++++|.+..+|..+.
T Consensus 213 LtsLP~~l~~~L~~L~L~~-N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~~Lp~lp~~L~ 285 (788)
T PRK15387 213 LTTLPDCLPAHITTLVIPD-NNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLC 285 (788)
T ss_pred CCcCCcchhcCCCEEEccC-CcCCCCCC----CCCCCcEEEecCCccCcccC--cccccceeeccCCchhhhhhchhhcC
Confidence 3445544445677777777 66666542 23566777777776666543 23455555555554444432110
Q ss_pred --------------CCCCCcEEEeeccccCCccccccCC-----------------CCccEEEecccccccCChhhhccc
Q psy4258 81 --------------GLTDLNWLFLNNNRLKSLEGQLGTL-----------------SKLQLLVIEQNQLEALPSDIQLFS 129 (245)
Q Consensus 81 --------------~~~~L~~L~l~~~~l~~~~~~~~~~-----------------~~L~~l~l~~~~l~~~~~~~~~~~ 129 (245)
..++|+.|++++|.+..+|.....+ .+|+.|++++|.+..+|.. ..
T Consensus 286 ~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~ 362 (788)
T PRK15387 286 KLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL---PS 362 (788)
T ss_pred EEECcCCccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC---Cc
Confidence 1244555555555555443311100 1333344443333333321 12
Q ss_pred ccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCC
Q psy4258 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209 (245)
Q Consensus 130 ~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n 209 (245)
+|+.|++..|.+..+|.. ..+|+.|++++|.++.++. ..++|+.|++++|.+..+|.. +.+|+.|++++|
T Consensus 363 ~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~N 432 (788)
T PRK15387 363 ELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRN 432 (788)
T ss_pred ccceehhhccccccCccc---ccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccC
Confidence 333333444444433321 1356667777766665432 124677777777777777643 346777888888
Q ss_pred cccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 210 QLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 210 ~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
+++. +|..+..++.|..+++++|+++..
T Consensus 433 qLt~-LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 433 QLTR-LPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred cccc-cChHHhhccCCCeEECCCCCCCch
Confidence 8886 577888899999999999999855
No 10
>KOG4237|consensus
Probab=99.80 E-value=3.7e-21 Score=148.69 Aligned_cols=233 Identities=24% Similarity=0.322 Sum_probs=164.6
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecC-Cccccch-hh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGF-NNLTSLN-NS 78 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~-~~~~~~~-~~ 78 (245)
.+.++|-.-++....|.|.. |.|+.+++.+|+.+.+|+.||+++|.|+.|.+.+|. +.+..|.+.+ |+++.+| +.
T Consensus 57 GL~eVP~~LP~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcccCcccCCCcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 46778888888999999999 999999999999999999999999999999999997 6666666655 8888777 55
Q ss_pred hcCCCCCcEEEeeccccCCc-cccccCCCCccEEEecccccccCCh-hhhcccccceeecccCc----------------
Q psy4258 79 LRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNR---------------- 140 (245)
Q Consensus 79 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~---------------- 140 (245)
|..+..++.|.+.-|++..+ .+.+..++++..|.+..|.+..++. .+..+..++++.+..|.
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 55665555555555544432 2233344444444444443332222 11122222222111111
Q ss_pred ---------------------------------------------CC-Cch-hhhcCCCCCcEEecCCCccccccCccCC
Q psy4258 141 ---------------------------------------------IT-SLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQ 173 (245)
Q Consensus 141 ---------------------------------------------~~-~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~ 173 (245)
.. ..| ..+..+++|+.+++++|.++.+.+.+|.
T Consensus 216 ~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 216 NPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred chhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc
Confidence 11 112 3567788899999999999888888898
Q ss_pred CCCCCCEEEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 174 NLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 174 ~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
+...++.|.+..|++..+. ..+.++..|+.|+|.+|+|+...|.+|....+|..+++-.|++.
T Consensus 296 ~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 296 GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 8889999999999888664 35677889999999999999888888888888888888877764
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.5e-19 Score=154.40 Aligned_cols=215 Identities=22% Similarity=0.352 Sum_probs=172.8
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCC
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLT 83 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 83 (245)
+..+|...+++|+.|++++ +.++.++.. + .++|+.|++++|.+..++.. +..+|+.|++++|++..+|..+. .
T Consensus 211 LtsLP~~l~~nL~~L~Ls~-N~LtsLP~~-l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~l~--~ 283 (754)
T PRK15370 211 LKSLPENLQGNIKTLYANS-NQLTSIPAT-L--PDTIQEMELSINRITELPER-LPSALQSLDLFHNKISCLPENLP--E 283 (754)
T ss_pred CCcCChhhccCCCEEECCC-CccccCChh-h--hccccEEECcCCccCcCChh-HhCCCCEEECcCCccCccccccC--C
Confidence 4455656667999999999 999877542 3 24799999999999888654 44789999999999998887553 5
Q ss_pred CCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCc
Q psy4258 84 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 84 ~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~ 163 (245)
+|++|++++|.++.+|..+. +.|+.|++++|.+..+|..+ .++|+.|++.+|.+..+|..+. ++|+.|++++|.
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~ 357 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQ 357 (754)
T ss_pred CCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCCC
Confidence 89999999999998876553 57899999999998877644 3689999999999998887553 689999999999
Q ss_pred cccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhh----hcCCCcccEEEccCCCCcc
Q psy4258 164 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD----IRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 164 l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~l~l~~n~l~~ 237 (245)
++.++. .+. ++|+.|++++|.++.+|..+. ..|+.|++++|++.+. |.. ....+.+..+++.+|+++.
T Consensus 358 L~~LP~-~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 358 ITVLPE-TLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CCcCCh-hhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCccH
Confidence 987654 332 689999999999999887653 4799999999999863 443 3445788999999999863
No 12
>KOG0472|consensus
Probab=99.79 E-value=2.1e-22 Score=156.05 Aligned_cols=223 Identities=23% Similarity=0.332 Sum_probs=195.9
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEEE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLF 89 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 89 (245)
....+..++.+. +++..++. .......++.++++.+.+.++++..+. -.+..++..+|.+..+|+.+.++..+..++
T Consensus 89 ~l~~l~~l~vs~-n~ls~lp~-~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~ 166 (565)
T KOG0472|consen 89 ELEALKSLNVSH-NKLSELPE-QIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLD 166 (565)
T ss_pred HHHHHHHhhccc-chHhhccH-HHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhh
Confidence 455677888888 88887754 456678899999999998888776554 678888889999999999999999999999
Q ss_pred eeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccC
Q psy4258 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR 169 (245)
Q Consensus 90 l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~ 169 (245)
+.+|+++.+|+..-.+..|+.++.-.|.+..+|+.++.+.+|..+++..|++..+| .+..+..+.+++++.|.+..++.
T Consensus 167 ~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpa 245 (565)
T KOG0472|consen 167 LEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPA 245 (565)
T ss_pred ccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHH
Confidence 99999998888777799999999999999999999999999999999999999999 48889999999999999988877
Q ss_pred ccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 170 DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
.....++++..|++.+|+++++|..+..+.+|+.||+++|.+++ .|-.++++ .|+.|-+.||++..+
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHH
Confidence 77778999999999999999999999889999999999999999 56788888 889999999988655
No 13
>KOG0617|consensus
Probab=99.75 E-value=1.3e-20 Score=130.41 Aligned_cols=178 Identities=24% Similarity=0.376 Sum_probs=139.2
Q ss_pred CCCCcccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEE
Q psy4258 34 LKGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLV 112 (245)
Q Consensus 34 ~~~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~ 112 (245)
+..+.+++.|.++.|.++.+++..-. .+|+.|++.+|.+.++|..++++++|+.|.++-|.+..+|..|+++|.|+.++
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 44567788888888888877765332 78888888888888888888888889998888888888888888888899999
Q ss_pred ecccccc--cCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccc
Q psy4258 113 IEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190 (245)
Q Consensus 113 l~~~~l~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 190 (245)
+.+|.+. .+|..+.-+..|+.|++++|.+.-+|..+..+++++.|.+.+|.+-..+ ..++.+..|+.|.+.+|+++-
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp-keig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP-KEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc-HHHHHHHHHHHHhcccceeee
Confidence 8888777 5777787888888888888888888888888888988888888877664 567778888888888888888
Q ss_pred ccccccCCC---CccEEEcCCCccc
Q psy4258 191 MNSSLSGLT---KLAYLYLSHNQLT 212 (245)
Q Consensus 191 ~~~~~~~~~---~L~~L~l~~n~l~ 212 (245)
+|+.+..+. +-+...+..|...
T Consensus 188 lppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 188 LPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred cChhhhhhhhhhhHHHHhhhhCCCC
Confidence 877665432 2233344455443
No 14
>KOG0617|consensus
Probab=99.74 E-value=5.1e-20 Score=127.57 Aligned_cols=153 Identities=28% Similarity=0.431 Sum_probs=77.5
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccC
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 139 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~ 139 (245)
.+++.|.++.|+++.+|..+..+.+|+.|.+.+|+++.+|..++++++|+.++++-|++..+|.+++.++.|+.|++..|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 34445555555555555444555555555555555555555555555555555555555555555555555555555554
Q ss_pred cCCC--chhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccc
Q psy4258 140 RITS--LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 140 ~~~~--~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
++.+ +|..++.++.++.|.+++|.+..++ ..++.+.+|+.|.+.+|.+-++|+.+..+.+|+.|++.+|+++-
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 4442 4444444555555555555444332 24444555555555555555555555555555555555555544
No 15
>KOG0618|consensus
Probab=99.72 E-value=2.9e-19 Score=151.10 Aligned_cols=195 Identities=26% Similarity=0.402 Sum_probs=106.8
Q ss_pred ccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccc
Q psy4258 39 ALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~ 117 (245)
+|+.++++.+.+..++..... .+|+.+....|.++.+|..+....+|+++.+..|.++-+|........|++|++..|.
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 455555555554444422111 4555555555555555444444445555555555555555555556667777777666
Q ss_pred cccCChhh--------------------------hcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCc
Q psy4258 118 LEALPSDI--------------------------QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRD 170 (245)
Q Consensus 118 l~~~~~~~--------------------------~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~ 170 (245)
+..+|+.+ ..++.|+.|++.+|.+++- -..+.++..|+.|++++|.++.++..
T Consensus 322 L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 322 LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH
Confidence 65554321 1223455666666666651 12356677888888888888777777
Q ss_pred cCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCC
Q psy4258 171 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235 (245)
Q Consensus 171 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l 235 (245)
.+..+..|+.|++++|+++.+|..+..++.|++|...+|.+... | .+..++.|+.+|++.|++
T Consensus 402 ~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~f-P-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 402 KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSF-P-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeec-h-hhhhcCcceEEecccchh
Confidence 77777788888888887776654444444444444444443331 2 333333344444443333
No 16
>KOG0618|consensus
Probab=99.72 E-value=1.5e-19 Score=152.78 Aligned_cols=224 Identities=27% Similarity=0.315 Sum_probs=173.7
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEEE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLF 89 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 89 (245)
-..+++.++++. +++..++ +-...+.+|+.++...|.+..++...+. .+|+.|.+..|.+..+|.....+..|++|+
T Consensus 239 ~p~nl~~~dis~-n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 239 VPLNLQYLDISH-NNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccccceeeecch-hhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeee
Confidence 456788888888 8888887 6677888888898888888777665554 677777888888877777777777888888
Q ss_pred eeccccCCcccccc--------------------------CCCCccEEEecccccc-cCChhhhcccccceeecccCcCC
Q psy4258 90 LNNNRLKSLEGQLG--------------------------TLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRIT 142 (245)
Q Consensus 90 l~~~~l~~~~~~~~--------------------------~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~~~ 142 (245)
+..|.+..+|+.+. .++.|+.|++.+|.++ ..-+.+.++++|+.|+++.|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 88777765553211 1356677777777766 23345778889999999999999
Q ss_pred Cchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcC
Q psy4258 143 SLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221 (245)
Q Consensus 143 ~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 221 (245)
.+|. .+.++..|++|++++|.++.++ ..+..++.|++|....|.+..+| .+..++.|+.+|++.|.++.........
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCC
Confidence 8874 5678889999999999998876 67778889999999999999888 6788999999999999988755444445
Q ss_pred CCcccEEEccCCCCccc
Q psy4258 222 LKRLRTVDLSYNKINKF 238 (245)
Q Consensus 222 ~~~L~~l~l~~n~l~~~ 238 (245)
.++|++||++||.-..+
T Consensus 475 ~p~LkyLdlSGN~~l~~ 491 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTRLVF 491 (1081)
T ss_pred CcccceeeccCCccccc
Confidence 58999999999874333
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=3.3e-16 Score=142.89 Aligned_cols=217 Identities=20% Similarity=0.296 Sum_probs=130.4
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccc-cccccCCCCCCcccEEEecCC-ccccchhhhcCCCCCcEE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNN-ITHIHENAFPPTIRKLHVGFN-NLTSLNNSLRGLTDLNWL 88 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~-i~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L 88 (245)
.+.+|+.|++.+ +.+..+. ..+..+++|+.++++++. ++.++.....++|++|++++| .+..+|..+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~-s~l~~L~-~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQG-SKLEKLW-DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcC-ccccccc-cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 456777888887 7776653 335667888888888764 666665555588888888876 456778778888888888
Q ss_pred Eeeccc-cCCccccccCCCCccEE---------------------EecccccccCChhh---------------------
Q psy4258 89 FLNNNR-LKSLEGQLGTLSKLQLL---------------------VIEQNQLEALPSDI--------------------- 125 (245)
Q Consensus 89 ~l~~~~-l~~~~~~~~~~~~L~~l---------------------~l~~~~l~~~~~~~--------------------- 125 (245)
++++|. +..+|..+ ++++|+.| +++++.+..+|..+
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 888763 55555433 33444444 44444433333221
Q ss_pred ---------hcccccceeecccCc-CCCchhhhcCCCCCcEEecCCCc-cccccCccCCCCCC-----------------
Q psy4258 126 ---------QLFSQLGSLYANNNR-ITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHN----------------- 177 (245)
Q Consensus 126 ---------~~~~~L~~l~l~~~~-~~~~~~~~~~~~~l~~L~l~~~~-l~~~~~~~~~~~~~----------------- 177 (245)
...++|+.|++++|. +..+|..+..+++|+.|++++|. +..++. .+ .+++
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-~~-~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-GI-NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-CC-CccccCEEECCCCCccccccc
Confidence 011345566666553 33467777778888888887763 333332 11 2334
Q ss_pred ----CCEEEccCCccccccccccCCCCccEEEcCCC-cccccchhhhcCCCcccEEEccCC
Q psy4258 178 ----LDSISLQNNQITSMNSSLSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRLRTVDLSYN 233 (245)
Q Consensus 178 ----L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~l~l~~n 233 (245)
++.|++++|.+..+|.++..+++|+.|++++| .+.. ++..+..++.|+.+++++|
T Consensus 844 ~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 844 ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCCeeecCCC
Confidence 44555555555556666666666666666665 3333 3444555556666666555
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.70 E-value=4.2e-17 Score=140.33 Aligned_cols=124 Identities=31% Similarity=0.305 Sum_probs=103.9
Q ss_pred CCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCC
Q psy4258 83 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 162 (245)
Q Consensus 83 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~ 162 (245)
.+|++|++++|.++.+|... ++|+.|++++|.+..+|.. ..+|+.|++++|.+..+|.. ..+++.|++++|
T Consensus 342 ~~Lq~LdLS~N~Ls~LP~lp---~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N 412 (788)
T PRK15387 342 SGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGN 412 (788)
T ss_pred cccceEecCCCccCCCCCCC---cccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCC
Confidence 47899999999998887643 5688899999998888753 35799999999999988864 367999999999
Q ss_pred ccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhh
Q psy4258 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219 (245)
Q Consensus 163 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 219 (245)
.++.++. . ..+|+.|++++|.++.+|..+..+++++.++|++|++.+..+..+
T Consensus 413 ~LssIP~-l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 413 RLTSLPM-L---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCCCc-c---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 9987653 2 356889999999999999999999999999999999998766665
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.69 E-value=1.3e-15 Score=139.16 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=102.5
Q ss_pred cCccccccEEeeCCCCC------ceecCCCCCCCC-cccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcC
Q psy4258 9 DGHAVALNLIDLEPETG------SHPLTSDDLKGT-PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRG 81 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~------l~~~~~~~~~~~-~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 81 (245)
+..|++|+.|.+.. +. +....+..|..+ .+|+.|.+.++.++.+|....+.+|++|++.++.+..++..+..
T Consensus 554 F~~m~~L~~L~~~~-~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYT-KKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEec-ccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccccccccc
Confidence 34677888887755 32 121223334444 35788888887777777655557888888888888777777777
Q ss_pred CCCCcEEEeeccc-cCCccccccCCCCccEEEeccc-ccccCChhhhcccccceeecccC-cCCCchhhhcCCCCCcEEe
Q psy4258 82 LTDLNWLFLNNNR-LKSLEGQLGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNN-RITSLDGLLRGLTKLQVFN 158 (245)
Q Consensus 82 ~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l~~~-~l~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~l~~L~ 158 (245)
+++|+.|+++++. +..+| .+..+++|+.|++++| .+..+|..+..+++|+.|++.+| .+..+|..+ .+++|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 8888888887654 45555 3666788888888776 35577777778888888888775 455566433 456666666
Q ss_pred cCCCc
Q psy4258 159 MDFNQ 163 (245)
Q Consensus 159 l~~~~ 163 (245)
+++|.
T Consensus 711 Lsgc~ 715 (1153)
T PLN03210 711 LSGCS 715 (1153)
T ss_pred CCCCC
Confidence 66653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=1.5e-17 Score=132.49 Aligned_cols=228 Identities=29% Similarity=0.330 Sum_probs=161.0
Q ss_pred ccccccEEeeCCCCCceec----CCCCCCCCcccceeeccccccccccC------CCC--CCcccEEEecCCccc-cchh
Q psy4258 11 HAVALNLIDLEPETGSHPL----TSDDLKGTPALITLLLVNNNITHIHE------NAF--PPTIRKLHVGFNNLT-SLNN 77 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~----~~~~~~~~~~L~~l~l~~~~i~~~~~------~~~--~~~L~~L~l~~~~~~-~~~~ 77 (245)
.++.|+.+++++ +.++.. ....+...++++.++++++.+...+. ..+ .++|++|++++|.+. ..+.
T Consensus 21 ~l~~L~~l~l~~-~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEG-NTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecC-CCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 455699999999 777432 12334566779999998887653111 111 269999999999876 3333
Q ss_pred hhcCC---CCCcEEEeeccccCC-----ccccccCC-CCccEEEecccccc-----cCChhhhcccccceeecccCcCCC
Q psy4258 78 SLRGL---TDLNWLFLNNNRLKS-----LEGQLGTL-SKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITS 143 (245)
Q Consensus 78 ~~~~~---~~L~~L~l~~~~l~~-----~~~~~~~~-~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~l~l~~~~~~~ 143 (245)
.+..+ ++|++|++++|.+.. +...+..+ ++|+.+++++|.+. .+...+..+++|+.|++.+|.+.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 34333 459999999998762 23345566 89999999999876 233446667789999999998874
Q ss_pred -----chhhhcCCCCCcEEecCCCcccccc----CccCCCCCCCCEEEccCCccccc--c---ccc-cCCCCccEEEcCC
Q psy4258 144 -----LDGLLRGLTKLQVFNMDFNQITMVR----RDEFQNLHNLDSISLQNNQITSM--N---SSL-SGLTKLAYLYLSH 208 (245)
Q Consensus 144 -----~~~~~~~~~~l~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~i~~~--~---~~~-~~~~~L~~L~l~~ 208 (245)
++..+...+++++|++++|.++... ...+..+++|+.|++++|.+.+. . ..+ ...+.|+.|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 3445566689999999999886432 23456678899999999988842 1 111 1247899999999
Q ss_pred Cccccc----chhhhcCCCcccEEEccCCCCcccc
Q psy4258 209 NQLTEF----LLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 209 n~l~~~----~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
|.+++. ....+..++.|+.+++++|.++..+
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 998732 2345566788999999999998764
No 21
>KOG4237|consensus
Probab=99.64 E-value=1.1e-17 Score=129.72 Aligned_cols=209 Identities=28% Similarity=0.456 Sum_probs=164.3
Q ss_pred CceeeccC---ccccccEEeeCCCCCceecCCCCCCCCcccceeeccc-cccccccCCCCC--CcccEEEecCCccccch
Q psy4258 3 RFSYFEDG---HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVN-NNITHIHENAFP--PTIRKLHVGFNNLTSLN 76 (245)
Q Consensus 3 ~~~~~~~~---~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~-~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~ 76 (245)
.+++||.. .+++|+.|+|+. |.|+.+.+++|.++..+.+|-+.+ |.|++++.++|. ..++.|.+.-|.+.-+.
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir 156 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR 156 (498)
T ss_pred CcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence 35566655 778899999999 999999999999999998887776 789999998887 67777888777777444
Q ss_pred -hhhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEecccccc---cCC-----------------------------
Q psy4258 77 -NSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLE---ALP----------------------------- 122 (245)
Q Consensus 77 -~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~---~~~----------------------------- 122 (245)
+.|..++++..|.+.+|.+..++. .+..+..++.+.+..|.+. .+|
T Consensus 157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri 236 (498)
T KOG4237|consen 157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRI 236 (498)
T ss_pred HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHh
Confidence 777888888888888887776665 4555555555555444311 011
Q ss_pred -------------------------------hhhhcccccceeecccCcCCCch-hhhcCCCCCcEEecCCCccccccCc
Q psy4258 123 -------------------------------SDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRD 170 (245)
Q Consensus 123 -------------------------------~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~ 170 (245)
..+..+++|+.+++++|.++.+. .++.....+++|.+..|.+..+...
T Consensus 237 ~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~ 316 (498)
T KOG4237|consen 237 NQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSG 316 (498)
T ss_pred cccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHH
Confidence 23566789999999999999875 5677888999999999999888778
Q ss_pred cCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCccc
Q psy4258 171 EFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 212 (245)
Q Consensus 171 ~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~ 212 (245)
.|.++..|+.|++.+|+|+.+ |.+|.....|.+|++-+|.+.
T Consensus 317 ~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 317 MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 889999999999999999965 667778888999998888764
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=1.2e-16 Score=127.30 Aligned_cols=224 Identities=24% Similarity=0.239 Sum_probs=147.3
Q ss_pred ccccccEEeeCCCCCcee------cCCCCCCCCcccceeeccccccccccCCCCC-----CcccEEEecCCccc-----c
Q psy4258 11 HAVALNLIDLEPETGSHP------LTSDDLKGTPALITLLLVNNNITHIHENAFP-----PTIRKLHVGFNNLT-----S 74 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~------~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-----~~L~~L~l~~~~~~-----~ 74 (245)
..++++++++++ +.+.. .....+..+++|+.|+++++.+.......+. ++|++|++++|.+. .
T Consensus 49 ~~~~l~~l~l~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 49 PQPSLKELCLSL-NETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hCCCceEEeccc-cccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 456688888887 65552 1122345577888888888877542222111 34888888888776 2
Q ss_pred chhhhcCC-CCCcEEEeeccccC-----CccccccCCCCccEEEecccccc-----cCChhhhcccccceeecccCcCCC
Q psy4258 75 LNNSLRGL-TDLNWLFLNNNRLK-----SLEGQLGTLSKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITS 143 (245)
Q Consensus 75 ~~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~l~l~~~~~~~ 143 (245)
+...+..+ ++|+.|++++|.++ .+...+..+++|+.+++++|.+. .++..+..+++|+.|++++|.+.+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 23455566 78888888888876 23445566678888888888776 233345556688888888887764
Q ss_pred -----chhhhcCCCCCcEEecCCCccccccCccCC-----CCCCCCEEEccCCccc-----cccccccCCCCccEEEcCC
Q psy4258 144 -----LDGLLRGLTKLQVFNMDFNQITMVRRDEFQ-----NLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSH 208 (245)
Q Consensus 144 -----~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~ 208 (245)
++..+..+++|+.|++++|.++......+. ..+.|+.|++++|.++ .+...+..+++|+.+++++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 334566678888888888877642211111 2367888888888876 2334455567888888888
Q ss_pred Ccccccc----hhhhcCC-CcccEEEccCCCC
Q psy4258 209 NQLTEFL----LDDIRGL-KRLRTVDLSYNKI 235 (245)
Q Consensus 209 n~l~~~~----~~~l~~~-~~L~~l~l~~n~l 235 (245)
|.+.... ..++... +.++.+++.+|.+
T Consensus 288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 288 NKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 8888653 2333344 5778888877754
No 23
>KOG0532|consensus
Probab=99.57 E-value=1e-16 Score=129.58 Aligned_cols=213 Identities=22% Similarity=0.288 Sum_probs=177.8
Q ss_pred cEEeeCCCCCceecCCCCCC-CCcccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEEEeecc
Q psy4258 16 NLIDLEPETGSHPLTSDDLK-GTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93 (245)
Q Consensus 16 ~~l~l~~~~~l~~~~~~~~~-~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 93 (245)
..+.|++ .+++..+...+. .+..-+..+++.|.+.+++..+-. ..|+.+.++.|.+..+|.++.++..|.+++++.|
T Consensus 53 g~l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 53 GRLLLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 4566777 777777655443 455667789999999888765433 7888999999999999999999999999999999
Q ss_pred ccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCC
Q psy4258 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQ 173 (245)
Q Consensus 94 ~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~ 173 (245)
+++.+|..++.++ |+.+.+++|++..+|..++...+|..++.+.|.+..+|..+..+.+++.+++..|.+..++....
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~- 209 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC- 209 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-
Confidence 9999999999888 99999999999999999998889999999999999999999999999999999999988865444
Q ss_pred CCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhh---cCCCcccEEEccCC
Q psy4258 174 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI---RGLKRLRTVDLSYN 233 (245)
Q Consensus 174 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l---~~~~~L~~l~l~~n 233 (245)
.++ |..|+++.|++..+|-.|.++..|++|-|.+|.++.. |..+ +...-+++|+.+-|
T Consensus 210 ~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 SLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 554 8999999999999999999999999999999999984 4333 22334566666544
No 24
>KOG0532|consensus
Probab=99.44 E-value=1.7e-15 Score=122.64 Aligned_cols=195 Identities=22% Similarity=0.323 Sum_probs=169.7
Q ss_pred eeccccccccccCCCCC---CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccc
Q psy4258 43 LLLVNNNITHIHENAFP---PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119 (245)
Q Consensus 43 l~l~~~~i~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~ 119 (245)
|.+++-.+++++-+++. ..-...+++.|++..+|..+..|..|..+.+..|.+..+|..+.++..|.+++++.|.+.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh
Confidence 55666667777766555 344568899999999998888899999999999999999999999999999999999999
Q ss_pred cCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCC
Q psy4258 120 ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199 (245)
Q Consensus 120 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 199 (245)
.+|..++.++ |+.+.+..|++..+|..+.....+..++.+.|.+..++ ..++++.+|+.|.+..|.+..+|+.+.. -
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp~El~~-L 211 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLPEELCS-L 211 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCCHHHhC-C
Confidence 9999887774 88999999999999998888899999999999998875 4677888999999999999999988874 4
Q ss_pred CccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccC
Q psy4258 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 241 (245)
Q Consensus 200 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~ 241 (245)
.|..||++.|++.- +|-.|..++.|++|-+.+|++..=+++
T Consensus 212 pLi~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 212 PLIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred ceeeeecccCceee-cchhhhhhhhheeeeeccCCCCCChHH
Confidence 58999999999999 578899999999999999999876654
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=1.9e-13 Score=111.99 Aligned_cols=176 Identities=29% Similarity=0.413 Sum_probs=114.9
Q ss_pred CcccEEEecCCccccchhhhcCCC-CCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeeccc
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLT-DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 138 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~ 138 (245)
+.++.+.+.++.+..++....... +|+.|++++|.+..++..+..++.|+.|+++.|.+..++......+.|+.+++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 456777777777776665555553 6777777777777666666677777777777777776666555666777777777
Q ss_pred CcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhh
Q psy4258 139 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 218 (245)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 218 (245)
|++.++|........++++.++.|..... ...+..+..+..+.+.++.+..++..+..++.++.|++++|.++....
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-- 272 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-- 272 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceec-chhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--
Confidence 77777766544445577777766643222 223455556666666666666655666666677777777777776433
Q ss_pred hcCCCcccEEEccCCCCccc
Q psy4258 219 IRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 219 l~~~~~L~~l~l~~n~l~~~ 238 (245)
++...+++.++++++.+...
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccCccCEEeccCcccccc
Confidence 66666777777777666544
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.41 E-value=4.1e-13 Score=110.08 Aligned_cols=180 Identities=36% Similarity=0.417 Sum_probs=147.5
Q ss_pred CCcccceeeccccccccccCCCCCC--cccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEe
Q psy4258 36 GTPALITLLLVNNNITHIHENAFPP--TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVI 113 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l 113 (245)
.++.++.+++.++.++++++..... +|+.|+++.|.+..++..+..+++|+.|+++.|++..++......+.|+.+++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4467888999999999888765553 89999999999998887788899999999999999988887768889999999
Q ss_pred cccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccc
Q psy4258 114 EQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 193 (245)
Q Consensus 114 ~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 193 (245)
++|.+..+|........|+.+.+..|.....+..+....++..+.+..+.+... ...++.++.++.|++++|.+..++.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec-cchhccccccceecccccccccccc
Confidence 999999888877667779999999987666666677788888888878777653 3466777889999999999998876
Q ss_pred cccCCCCccEEEcCCCcccccchh
Q psy4258 194 SLSGLTKLAYLYLSHNQLTEFLLD 217 (245)
Q Consensus 194 ~~~~~~~L~~L~l~~n~l~~~~~~ 217 (245)
+....+++.++++++.+...++.
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred -ccccCccCEEeccCccccccchh
Confidence 77788999999999888765443
No 27
>KOG1909|consensus
Probab=99.39 E-value=3.9e-14 Score=108.54 Aligned_cols=225 Identities=22% Similarity=0.247 Sum_probs=164.8
Q ss_pred ccccccEEeeCCCCCceec----CCCCCCCCcccceeeccccccc----cccC------CCC--CCcccEEEecCCccc-
Q psy4258 11 HAVALNLIDLEPETGSHPL----TSDDLKGTPALITLLLVNNNIT----HIHE------NAF--PPTIRKLHVGFNNLT- 73 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~----~~~~~~~~~~L~~l~l~~~~i~----~~~~------~~~--~~~L~~L~l~~~~~~- 73 (245)
.+..++.|+|++ |.+..- ....+...++|+..++++..-+ +++. .++ ++.|++++|+.|-+.
T Consensus 28 ~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 456788999999 887622 2334556678888888865221 1111 111 269999999999665
Q ss_pred ----cchhhhcCCCCCcEEEeeccccCCcc--------------ccccCCCCccEEEecccccccCC-----hhhhcccc
Q psy4258 74 ----SLNNSLRGLTDLNWLFLNNNRLKSLE--------------GQLGTLSKLQLLVIEQNQLEALP-----SDIQLFSQ 130 (245)
Q Consensus 74 ----~~~~~~~~~~~L~~L~l~~~~l~~~~--------------~~~~~~~~L~~l~l~~~~l~~~~-----~~~~~~~~ 130 (245)
.+...+.++.+|++|.+.+|.+.... ....+-+.|+.+...+|++...+ ..+..++.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 23356788999999999999887332 23445689999999999887433 34667789
Q ss_pred cceeecccCcCCC-----chhhhcCCCCCcEEecCCCccccc----cCccCCCCCCCCEEEccCCcccc-----ccccc-
Q psy4258 131 LGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMV----RRDEFQNLHNLDSISLQNNQITS-----MNSSL- 195 (245)
Q Consensus 131 L~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~- 195 (245)
|+.+.+..|.+.. +...+..++.|+.|++.+|.++.. ....++.++.|+.+++++|.+.. +...+
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 9999999998774 346788899999999999988753 23567778899999999998883 22222
Q ss_pred cCCCCccEEEcCCCcccccchhh----hcCCCcccEEEccCCCCc
Q psy4258 196 SGLTKLAYLYLSHNQLTEFLLDD----IRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 196 ~~~~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~l~l~~n~l~ 236 (245)
...|+|+.+.+.+|.++.....+ +..-+.|..|++++|.+.
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 33689999999999998653333 344678999999999994
No 28
>KOG1259|consensus
Probab=99.34 E-value=3.8e-13 Score=101.70 Aligned_cols=133 Identities=27% Similarity=0.352 Sum_probs=93.5
Q ss_pred CCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEc
Q psy4258 104 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 183 (245)
Q Consensus 104 ~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 183 (245)
.++.|+.+++++|.+..+...+.-.++++.|+++.|.+..+.. +..+++++.|++++|.++...+ |=..+.+.++|.+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhh-hHhhhcCEeeeeh
Confidence 4567777888888777777777777788888888887776654 6667778888888877766543 3334556777777
Q ss_pred cCCccccccccccCCCCccEEEcCCCccccc-chhhhcCCCcccEEEccCCCCcccc
Q psy4258 184 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 184 ~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
++|.+.++ ..+..+-+|..||+++|++... -...++.+|.|..+.+.+|++..+.
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 77777766 3455566777788888877653 2345677777777778888776553
No 29
>KOG3207|consensus
Probab=99.34 E-value=1.3e-13 Score=108.66 Aligned_cols=154 Identities=22% Similarity=0.237 Sum_probs=61.8
Q ss_pred ccccccEEeeCCCCCceecCC-CCCCCCcccceeeccccccccccCCC-C---CCcccEEEecCCccccchhh--hcCCC
Q psy4258 11 HAVALNLIDLEPETGSHPLTS-DDLKGTPALITLLLVNNNITHIHENA-F---PPTIRKLHVGFNNLTSLNNS--LRGLT 83 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~-~~~~~~~~L~~l~l~~~~i~~~~~~~-~---~~~L~~L~l~~~~~~~~~~~--~~~~~ 83 (245)
+...|+.+.+.. ..+..... .....|++++.||++.|-+..+.+.. + .|+|+.|+++.|++....++ -..++
T Consensus 119 n~kkL~~IsLdn-~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDN-YRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecC-ccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 444455555555 44433322 22334455555555555443332110 0 14555555555444321111 01334
Q ss_pred CCcEEEeeccccC--CccccccCCCCccEEEecccc-cccCChhhhcccccceeecccCcCCCch--hhhcCCCCCcEEe
Q psy4258 84 DLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQ-LEALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQVFN 158 (245)
Q Consensus 84 ~L~~L~l~~~~l~--~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~l~~L~ 158 (245)
+|+.|.++.|.++ ++......+|.|+.|++..|. +..-......+..|+.|++++|++.+++ .....++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 4444555555443 222223334445555554442 1111111222334444455444444433 2233444444444
Q ss_pred cCCCccc
Q psy4258 159 MDFNQIT 165 (245)
Q Consensus 159 l~~~~l~ 165 (245)
++.+++.
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 4444443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=1.8e-12 Score=92.82 Aligned_cols=58 Identities=34% Similarity=0.396 Sum_probs=7.7
Q ss_pred ccceeeccccccccccCCC-CCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCC
Q psy4258 39 ALITLLLVNNNITHIHENA-FPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 97 (245)
++++|++.++.|+.+.... ...+|+.|++++|.++.+.+ +..++.|+.|++++|.+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCc
Confidence 3444444444444443221 11334444444444443321 2333334444444443333
No 31
>KOG3207|consensus
Probab=99.32 E-value=6e-13 Score=104.91 Aligned_cols=203 Identities=24% Similarity=0.320 Sum_probs=146.8
Q ss_pred CCcccceeeccccccccccCCCC---CCcccEEEecCCcccc---chhhhcCCCCCcEEEeeccccCCcccc--ccCCCC
Q psy4258 36 GTPALITLLLVNNNITHIHENAF---PPTIRKLHVGFNNLTS---LNNSLRGLTDLNWLFLNNNRLKSLEGQ--LGTLSK 107 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~~~---~~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~~ 107 (245)
++.+|+.+.+.++.+...+.... .++++.|+|++|-+.. +-.....+++|+.|.++.|.+....+. -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 56788899999988776653222 2899999999997663 335567889999999999987743222 124588
Q ss_pred ccEEEecccccc--cCChhhhcccccceeecccCcCC-CchhhhcCCCCCcEEecCCCccccccC-ccCCCCCCCCEEEc
Q psy4258 108 LQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISL 183 (245)
Q Consensus 108 L~~l~l~~~~l~--~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l 183 (245)
|+.|.+..|.+. .+...+..+++++.|++..|... .-.....-+..|++|++++|.+-..+. ...+.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 999999999887 44555677899999999988522 112223345688999999998765542 45677889999999
Q ss_pred cCCccccc--ccc-----ccCCCCccEEEcCCCcccccc-hhhhcCCCcccEEEccCCCCccc
Q psy4258 184 QNNQITSM--NSS-----LSGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 184 ~~~~i~~~--~~~-----~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
+.+++.++ |.. -..+++|+.|++..|++.++. ...+..+++|+.+.+..|.++.-
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99999865 222 245789999999999997642 23455667788888888777543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=2.9e-12 Score=91.76 Aligned_cols=123 Identities=27% Similarity=0.373 Sum_probs=48.9
Q ss_pred ccccccEEeeCCCCCceecCCCCCC-CCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhh-cCCCCCcEE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLK-GTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWL 88 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~-~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L 88 (245)
++..+++|+|.+ +.++.++. +. .+.+|+.|++++|.|+.++.-...+.|++|++++|.++.++..+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~-n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRG-NQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccc-cccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 677899999999 99998864 44 57899999999999999886555699999999999999886555 468999999
Q ss_pred EeeccccCCccc--cccCCCCccEEEecccccccCCh----hhhcccccceeec
Q psy4258 89 FLNNNRLKSLEG--QLGTLSKLQLLVIEQNQLEALPS----DIQLFSQLGSLYA 136 (245)
Q Consensus 89 ~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~l~~~~~----~~~~~~~L~~l~l 136 (245)
++++|.+.++.. .+..+++|+.|++.+|.+..-+. .+..+++|+.|+-
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999886543 45567888888888887664332 2445566666553
No 33
>KOG1259|consensus
Probab=99.26 E-value=9.8e-13 Score=99.47 Aligned_cols=177 Identities=21% Similarity=0.283 Sum_probs=133.9
Q ss_pred CCCcccceeeccccccccccCC-CCCCcccEEEecCCccccc----h--------------------hhhcCCCCCcEEE
Q psy4258 35 KGTPALITLLLVNNNITHIHEN-AFPPTIRKLHVGFNNLTSL----N--------------------NSLRGLTDLNWLF 89 (245)
Q Consensus 35 ~~~~~L~~l~l~~~~i~~~~~~-~~~~~L~~L~l~~~~~~~~----~--------------------~~~~~~~~L~~L~ 89 (245)
..+.+|+.+.++.+.-..|-.. +..|.|+++.+.+..+... | ..+..+..|+.++
T Consensus 211 ~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 211 NAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred HHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 3446677777776644333322 2237777777765433311 1 1123446788899
Q ss_pred eeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccC
Q psy4258 90 LNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR 169 (245)
Q Consensus 90 l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~ 169 (245)
+++|.++.+..+..-.|.++.|+++.|.+..+.. +..+++|+.|++++|.+..+..+=..+.++++|.+++|.+.+..
T Consensus 291 LS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS- 368 (490)
T KOG1259|consen 291 LSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS- 368 (490)
T ss_pred ccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-
Confidence 9999999888888888999999999999887654 88889999999999998887766667889999999999887764
Q ss_pred ccCCCCCCCCEEEccCCcccccc--ccccCCCCccEEEcCCCccccc
Q psy4258 170 DEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~n~l~~~ 214 (245)
-+..+-+|..|++.+|+|..+. ..+..+|.|+.+.|.+|++.+.
T Consensus 369 -GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 369 -GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred -hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 3666778999999999999653 5778899999999999998874
No 34
>KOG1909|consensus
Probab=99.19 E-value=2.9e-12 Score=98.44 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=131.7
Q ss_pred CCCCcccceeeccccccccccCCCC------CCcccEEEecCCccccch--------------hhhcCCCCCcEEEeecc
Q psy4258 34 LKGTPALITLLLVNNNITHIHENAF------PPTIRKLHVGFNNLTSLN--------------NSLRGLTDLNWLFLNNN 93 (245)
Q Consensus 34 ~~~~~~L~~l~l~~~~i~~~~~~~~------~~~L~~L~l~~~~~~~~~--------------~~~~~~~~L~~L~l~~~ 93 (245)
+.++++|+.+++++|-++.-....| +..|++|.+.+|.+.... .-..+-++|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 4456677777777776654433222 256777777777765321 22356689999999999
Q ss_pred ccCCc-----cccccCCCCccEEEeccccccc-----CChhhhcccccceeecccCcCCC-----chhhhcCCCCCcEEe
Q psy4258 94 RLKSL-----EGQLGTLSKLQLLVIEQNQLEA-----LPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFN 158 (245)
Q Consensus 94 ~l~~~-----~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~l~~L~ 158 (245)
.+.+- ...+...+.|+.+.++.|.+.. +...+..+++|+.|++.+|.++. +...+..++.|+.++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 88743 3457778999999999998761 23457889999999999998874 567888899999999
Q ss_pred cCCCccccccCcc-----CCCCCCCCEEEccCCcccc-----ccccccCCCCccEEEcCCCccc
Q psy4258 159 MDFNQITMVRRDE-----FQNLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLT 212 (245)
Q Consensus 159 l~~~~l~~~~~~~-----~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~n~l~ 212 (245)
+++|.+....... -...++|+.+.+++|.|+. +...+...+.|+.|+|++|.+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999886533221 1236889999999999882 3344566899999999999993
No 35
>KOG0531|consensus
Probab=98.99 E-value=4e-11 Score=98.78 Aligned_cols=127 Identities=26% Similarity=0.342 Sum_probs=69.2
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccC-CCCCCcccEEEecCCccccchhhhcCCCCCcEEEee
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHE-NAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 91 (245)
..++.+.+.. +.+..+. ..+..+.+|+.+++.+|.|..+.. ....++|++|++++|.++.+. .+..+..|+.|++.
T Consensus 72 ~~l~~l~l~~-n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQ-NLIAKIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccch-hhhhhhh-cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 3344444444 4444311 124445566666666666666655 344466666666666666552 23445556666666
Q ss_pred ccccCCccccccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCC
Q psy4258 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITS 143 (245)
Q Consensus 92 ~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~ 143 (245)
+|.+..+.. +..++.|+.+++++|.+..+... ...+.+++.+++.+|.+..
T Consensus 149 ~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 149 GNLISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCcchhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 666665432 33456666666666666544332 3555566666666665543
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=1.2e-09 Score=64.71 Aligned_cols=58 Identities=36% Similarity=0.503 Sum_probs=41.5
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCc
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNN 71 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~ 71 (245)
|+|++|++.+ ++++.++...|.++++|+.|++++|.++.+++.+|. ++|++|++++|+
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4677777777 777777777777777777777777777777766654 566666666554
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.99 E-value=7.7e-10 Score=65.50 Aligned_cols=59 Identities=42% Similarity=0.575 Sum_probs=37.5
Q ss_pred CCCEEEccCCccccccc-cccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCC
Q psy4258 177 NLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235 (245)
Q Consensus 177 ~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l 235 (245)
+|+.|++++|.++.++. .+..+++|+.|++++|.++...++++.++++|+.+++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 45666666666666653 455566666666666666666666666666666666666654
No 38
>KOG0531|consensus
Probab=98.86 E-value=4.8e-10 Score=92.42 Aligned_cols=222 Identities=26% Similarity=0.355 Sum_probs=150.0
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEE
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLF 89 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 89 (245)
..+.+++.+++.+ +.+..+... +..+++|+.|++++|.|+++........|+.|++.+|.++.+.. +..+..|+.++
T Consensus 92 ~~~~~l~~l~l~~-n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~ 168 (414)
T KOG0531|consen 92 SKLKSLEALDLYD-NKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLD 168 (414)
T ss_pred ccccceeeeeccc-cchhhcccc-hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-Cccchhhhccc
Confidence 4678899999999 999888642 56789999999999999999877777889999999999998854 45589999999
Q ss_pred eeccccCCcccc-ccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCC--CCcEEecCCCcccc
Q psy4258 90 LNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT--KLQVFNMDFNQITM 166 (245)
Q Consensus 90 l~~~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--~l~~L~l~~~~l~~ 166 (245)
+++|.+..+... ...+.+++.+.+.+|.+..+. .+..+..+..+.+..|.+..+.. +.... .++.+++.++.+..
T Consensus 169 l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~ 246 (414)
T KOG0531|consen 169 LSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISR 246 (414)
T ss_pred CCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCcccc
Confidence 999999877654 577888999999998776442 23333444444666666654432 22222 27778888887765
Q ss_pred ccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCccccc---chhh-hcCCCcccEEEccCCCCccc
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF---LLDD-IRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~-l~~~~~L~~l~l~~n~l~~~ 238 (245)
.+ ..+..+..+..+++..+.+..+. .+...+.+..+....+.+... .... ....+.+..+.+.+|.+...
T Consensus 247 ~~-~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 247 SP-EGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cc-ccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence 52 34555667777777777776542 233444555555555554421 1111 23345555666666655443
No 39
>KOG4658|consensus
Probab=98.83 E-value=4.3e-09 Score=93.20 Aligned_cols=126 Identities=27% Similarity=0.367 Sum_probs=85.1
Q ss_pred cccceeeccccccccccCCCCCCcccEEEecCCc--cccch-hhhcCCCCCcEEEeeccc-cCCccccccCCCCccEEEe
Q psy4258 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNN--LTSLN-NSLRGLTDLNWLFLNNNR-LKSLEGQLGTLSKLQLLVI 113 (245)
Q Consensus 38 ~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~--~~~~~-~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l 113 (245)
...+.+.+-++.+..++...-.+.|+.|-+..+. +..++ ..|..++.|++|++++|. +..+|..++.+-+|++|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 4456666666666666555555677777777775 44444 446677888888887654 5677777777777888888
Q ss_pred cccccccCChhhhcccccceeecccCcCC-CchhhhcCCCCCcEEecCCCc
Q psy4258 114 EQNQLEALPSDIQLFSQLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 114 ~~~~l~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~~~ 163 (245)
+++.+..+|.++.++++|.+|++..+... .+|.....+++|++|.+....
T Consensus 603 ~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 603 SDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 88777778888888888888877765433 334444457777777775543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.78 E-value=2.1e-08 Score=86.61 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=66.9
Q ss_pred cceeecccCcCCC-chhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccc-cccccccCCCCccEEEcCC
Q psy4258 131 LGSLYANNNRITS-LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSH 208 (245)
Q Consensus 131 L~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~ 208 (245)
++.|++.++.+.. +|..+..+++|+.|++++|.+....+..++.+++|+.|++++|.+. .+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 4555666666553 5556666677777777777766555556666777777777777766 4566666777777777777
Q ss_pred CcccccchhhhcCC-CcccEEEccCCC
Q psy4258 209 NQLTEFLLDDIRGL-KRLRTVDLSYNK 234 (245)
Q Consensus 209 n~l~~~~~~~l~~~-~~L~~l~l~~n~ 234 (245)
|.+.+.+|..+... .++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77776666666542 344556666554
No 41
>KOG4658|consensus
Probab=98.73 E-value=6.3e-09 Score=92.19 Aligned_cols=126 Identities=25% Similarity=0.334 Sum_probs=72.1
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccc--cccccCCCCC--CcccEEEecCC-ccccchhhhcCCCCC
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNN--ITHIHENAFP--PTIRKLHVGFN-NLTSLNNSLRGLTDL 85 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~--i~~~~~~~~~--~~L~~L~l~~~-~~~~~~~~~~~~~~L 85 (245)
+....+.+.+.+ +.+..+... ..+++|++|-+..+. +..++...|. +.|+.|++++| .+..+|..++.+.+|
T Consensus 521 ~~~~~rr~s~~~-~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMN-NKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEec-cchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 344556666666 555444321 233456666666554 4444433232 66777777655 445667667777777
Q ss_pred cEEEeeccccCCccccccCCCCccEEEecccccc-cCChhhhcccccceeecccC
Q psy4258 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNN 139 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~ 139 (245)
++|+++++.++.+|..+.++..|.+|++..+... .++.....+.+|++|.+...
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 7777777777777777777777777776655322 33333444666666665443
No 42
>KOG1859|consensus
Probab=98.69 E-value=1.5e-10 Score=97.20 Aligned_cols=129 Identities=29% Similarity=0.365 Sum_probs=85.0
Q ss_pred CCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccC
Q psy4258 106 SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185 (245)
Q Consensus 106 ~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 185 (245)
-+|...++++|++..+...+.-++.++.|+++.|++.+.. .+..++.|++||++.|.+..++.-...++. |+.|.+.+
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 4566666677776666666666777777777777777766 466777777788877777766543333443 77777777
Q ss_pred CccccccccccCCCCccEEEcCCCcccccc-hhhhcCCCcccEEEccCCCCcc
Q psy4258 186 NQITSMNSSLSGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 186 ~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
|.++++ ..+.++.+|..||+++|-+.+-- -.-+..+..|+.|.+.||++-.
T Consensus 242 N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 777766 44566777777777777665521 1123334566777777777643
No 43
>KOG4579|consensus
Probab=98.67 E-value=1e-09 Score=73.79 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=77.3
Q ss_pred ccceeeccccccccccCCCCC----CcccEEEecCCccccchhhh-cCCCCCcEEEeeccccCCccccccCCCCccEEEe
Q psy4258 39 ALITLLLVNNNITHIHENAFP----PTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVI 113 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l 113 (245)
.+-.+++++|.+..++..... ..|+.+++++|.+..+|..| ..++.++.+.+++|.+.++|.++..++.|+.+++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 344566666665544432111 45666777777777776555 3445777777777777777777777777777777
Q ss_pred cccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcc
Q psy4258 114 EQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 114 ~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l 164 (245)
..|.+...|..+..+.++..|+..+|....++..+...+......+..+.+
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl 158 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPL 158 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcc
Confidence 777777666666666777777777776666654433333333334444333
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.67 E-value=3.2e-09 Score=79.59 Aligned_cols=227 Identities=18% Similarity=0.177 Sum_probs=144.5
Q ss_pred cccccEEeeCCCCCceecCC----CCCCCCcccceeecccccccccc------------CCCCCCcccEEEecCCccc--
Q psy4258 12 AVALNLIDLEPETGSHPLTS----DDLKGTPALITLLLVNNNITHIH------------ENAFPPTIRKLHVGFNNLT-- 73 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~~~~~----~~~~~~~~L~~l~l~~~~i~~~~------------~~~~~~~L~~L~l~~~~~~-- 73 (245)
+..+..++++| |.+..-.. ..+..-.+|+..++++-..+-.. ...-+|.++.++++.|-+.
T Consensus 29 ~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 56678888888 77763322 22334456777766654222111 1111378899999888665
Q ss_pred ---cchhhhcCCCCCcEEEeeccccCCccc--------------cccCCCCccEEEecccccccCChh-----hhccccc
Q psy4258 74 ---SLNNSLRGLTDLNWLFLNNNRLKSLEG--------------QLGTLSKLQLLVIEQNQLEALPSD-----IQLFSQL 131 (245)
Q Consensus 74 ---~~~~~~~~~~~L~~L~l~~~~l~~~~~--------------~~~~~~~L~~l~l~~~~l~~~~~~-----~~~~~~L 131 (245)
.+.+.+++-.+|++|.+++|.+..+.+ ...+-|.|+.+...+|++...+.. +.....|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 223667888899999999998764432 123348889999988888755543 3334578
Q ss_pred ceeecccCcCCC--c----hhhhcCCCCCcEEecCCCcccccc----CccCCCCCCCCEEEccCCcccc--cc---ccc-
Q psy4258 132 GSLYANNNRITS--L----DGLLRGLTKLQVFNMDFNQITMVR----RDEFQNLHNLDSISLQNNQITS--MN---SSL- 195 (245)
Q Consensus 132 ~~l~l~~~~~~~--~----~~~~~~~~~l~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~i~~--~~---~~~- 195 (245)
+.+.+..|.++. + -..+..+.+|+.|++++|.++... ...+..++.|+.|.+.+|-+.. .. ..+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 888888887763 1 134566788999999999876432 3455667778888888887763 11 111
Q ss_pred -cCCCCccEEEcCCCcccccchh-----hh--cCCCcccEEEccCCCCcccc
Q psy4258 196 -SGLTKLAYLYLSHNQLTEFLLD-----DI--RGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 196 -~~~~~L~~L~l~~n~l~~~~~~-----~l--~~~~~L~~l~l~~n~l~~~~ 239 (245)
...|+|..|-..+|.+.+.... .+ ...+-|..+.+.+|.+++..
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence 2357788888888866542211 11 34566777777888887653
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.62 E-value=6.5e-09 Score=77.96 Aligned_cols=201 Identities=18% Similarity=0.162 Sum_probs=133.5
Q ss_pred CCcccceeeccccccccccCCCCC------CcccEEEecCCccc----c-------chhhhcCCCCCcEEEeeccccC-C
Q psy4258 36 GTPALITLLLVNNNITHIHENAFP------PTIRKLHVGFNNLT----S-------LNNSLRGLTDLNWLFLNNNRLK-S 97 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~~~~------~~L~~L~l~~~~~~----~-------~~~~~~~~~~L~~L~l~~~~l~-~ 97 (245)
.+..++.+++++|.|+.-+...++ .+|+..+++.--.. . +..++..|+.|+.+++++|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 357788999999988765443332 56777776542111 2 2356678899999999998765 2
Q ss_pred c----cccccCCCCccEEEecccccccC-----Chh---------hhcccccceeecccCcCCCch-----hhhcCCCCC
Q psy4258 98 L----EGQLGTLSKLQLLVIEQNQLEAL-----PSD---------IQLFSQLGSLYANNNRITSLD-----GLLRGLTKL 154 (245)
Q Consensus 98 ~----~~~~~~~~~L~~l~l~~~~l~~~-----~~~---------~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~~l 154 (245)
. -+.+++...|.+|.+.+|.+..+ ..+ ..+-+.|+.+.+..|++...+ ..+.....+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 2 24466778899999999876522 211 233467888989888887643 334444688
Q ss_pred cEEecCCCcccccc-----CccCCCCCCCCEEEccCCcccc-----ccccccCCCCccEEEcCCCcccccchhhh-----
Q psy4258 155 QVFNMDFNQITMVR-----RDEFQNLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFLLDDI----- 219 (245)
Q Consensus 155 ~~L~l~~~~l~~~~-----~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l----- 219 (245)
+++.+..|.+.... ..-+..+.+|+.|++++|.++- +...+..|+.|..|.+..|.++.....++
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 89999888775421 1223456789999999988773 23455677788999999998876544333
Q ss_pred -cCCCcccEEEccCCCCc
Q psy4258 220 -RGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 220 -~~~~~L~~l~l~~n~l~ 236 (245)
...++|..|...+|.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 268 EKFVPNLMPLPGDYNERR 285 (388)
T ss_pred hhcCCCccccccchhhhc
Confidence 12466777777777553
No 46
>KOG2982|consensus
Probab=98.61 E-value=2.2e-08 Score=76.15 Aligned_cols=63 Identities=19% Similarity=0.279 Sum_probs=32.4
Q ss_pred CCCCcEEecCCCccccccC-ccCCCCCCCCEEEccCCcccccc--ccccCCCCccEEEcCCCcccc
Q psy4258 151 LTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 151 ~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~n~l~~ 213 (245)
++++.++-+..|.+..... ..+..++.+..|+++.+.+.++. ..+.+++++..|.++++++.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 4555555555555433221 12333444455566666666442 234556666666666666554
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=7.2e-08 Score=83.34 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=77.6
Q ss_pred CcEEecCCCccccccCccCCCCCCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccC
Q psy4258 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232 (245)
Q Consensus 154 l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~ 232 (245)
++.|++++|.+....+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 678999999998777778899999999999999998 6888899999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy4258 233 NKINK 237 (245)
Q Consensus 233 n~l~~ 237 (245)
|.++.
T Consensus 500 N~l~g 504 (623)
T PLN03150 500 NSLSG 504 (623)
T ss_pred Ccccc
Confidence 99873
No 48
>KOG2982|consensus
Probab=98.56 E-value=1.3e-08 Score=77.37 Aligned_cols=178 Identities=19% Similarity=0.242 Sum_probs=122.4
Q ss_pred CcccEEEecCCcccc---chhhhcCCCCCcEEEeeccccCCccccc-cCCCCccEEEecccccc--cCChhhhcccccce
Q psy4258 60 PTIRKLHVGFNNLTS---LNNSLRGLTDLNWLFLNNNRLKSLEGQL-GTLSKLQLLVIEQNQLE--ALPSDIQLFSQLGS 133 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~l~l~~~~l~--~~~~~~~~~~~L~~ 133 (245)
..++++++.+|.+.. +...+.+++.|++|.++.|++.+.-+.. ....+|+.+.+.+..+. .....+..++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 678888998888773 4444578899999999999877543333 34578888888887665 55566778888888
Q ss_pred eecccCcCCCc---hhhhcC-CCCCcEEecCCCcccccc--CccCCCCCCCCEEEccCCccccc--cccccCCCCccEEE
Q psy4258 134 LYANNNRITSL---DGLLRG-LTKLQVFNMDFNQITMVR--RDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLY 205 (245)
Q Consensus 134 l~l~~~~~~~~---~~~~~~-~~~l~~L~l~~~~l~~~~--~~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~ 205 (245)
+.++.|.++.+ ...... .+.+.++++-.|...... ......++++..+.+..|.+.+. .+.....+.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 88888855432 122222 346777777777543211 11122346788888888888754 34556678888899
Q ss_pred cCCCcccccc-hhhhcCCCcccEEEccCCCCcc
Q psy4258 206 LSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 206 l~~n~l~~~~-~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
|+.+++.++. ..++.+++.+..+.+..+++.+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 9998888753 3567788888888888888754
No 49
>KOG1859|consensus
Probab=98.53 E-value=7.1e-10 Score=93.24 Aligned_cols=100 Identities=27% Similarity=0.403 Sum_probs=43.7
Q ss_pred cccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChh-hhcccccceeecccC
Q psy4258 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 139 (245)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~ 139 (245)
.|...++++|.++.+..++.-++.+++|+++.|++.++. .+.-+++|++||++.|.+..+|.- ...+ +|+.|.+.+|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc
Confidence 344444445555444444444455555555555544443 344444455555554444443321 1112 2444444444
Q ss_pred cCCCchhhhcCCCCCcEEecCCCc
Q psy4258 140 RITSLDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~l~~~~ 163 (245)
.++.+-. +.++.+|+.||++.|-
T Consensus 243 ~l~tL~g-ie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 243 ALTTLRG-IENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHHhhhh-HHhhhhhhccchhHhh
Confidence 4443321 3334444444444443
No 50
>KOG4579|consensus
Probab=98.50 E-value=2.9e-09 Score=71.70 Aligned_cols=87 Identities=21% Similarity=0.341 Sum_probs=46.1
Q ss_pred CCccEEEecccccccCChhhhc-ccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEcc
Q psy4258 106 SKLQLLVIEQNQLEALPSDIQL-FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ 184 (245)
Q Consensus 106 ~~L~~l~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 184 (245)
..|..+++++|.+..+|+.+.. ++.+..+++..|.+.++|..+..++.|+.++++.|.+...+...+ .+.++..|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHH-HHHhHHHhcCC
Confidence 3444445555555545444332 234555566666666666556666666666666666655443222 25555555555
Q ss_pred CCccccccc
Q psy4258 185 NNQITSMNS 193 (245)
Q Consensus 185 ~~~i~~~~~ 193 (245)
+|.+..+|-
T Consensus 132 ~na~~eid~ 140 (177)
T KOG4579|consen 132 ENARAEIDV 140 (177)
T ss_pred CCccccCcH
Confidence 555555543
No 51
>KOG2120|consensus
Probab=98.46 E-value=2.7e-09 Score=80.93 Aligned_cols=80 Identities=19% Similarity=0.110 Sum_probs=35.5
Q ss_pred ccEEeeCCCCCceec-CCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCC-ccccc--hhhhcCCCCCcEE
Q psy4258 15 LNLIDLEPETGSHPL-TSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFN-NLTSL--NNSLRGLTDLNWL 88 (245)
Q Consensus 15 L~~l~l~~~~~l~~~-~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~-~~~~~--~~~~~~~~~L~~L 88 (245)
++++|++. ..++.- ....++.|.+|+.+.++++.+.+.-....+ .+|+.++++++ ++++. .--+.+|..|..|
T Consensus 187 lq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 55555555 444311 112234455555555555554432221111 45555555554 23321 1223455555555
Q ss_pred Eeecccc
Q psy4258 89 FLNNNRL 95 (245)
Q Consensus 89 ~l~~~~l 95 (245)
.+++|.+
T Consensus 266 NlsWc~l 272 (419)
T KOG2120|consen 266 NLSWCFL 272 (419)
T ss_pred CchHhhc
Confidence 5555543
No 52
>KOG2120|consensus
Probab=98.46 E-value=6.1e-09 Score=79.10 Aligned_cols=172 Identities=15% Similarity=0.079 Sum_probs=112.8
Q ss_pred CcccEEEecCCccc--cchhhhcCCCCCcEEEeeccccC-CccccccCCCCccEEEeccc-ccccC--Chhhhcccccce
Q psy4258 60 PTIRKLHVGFNNLT--SLNNSLRGLTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQN-QLEAL--PSDIQLFSQLGS 133 (245)
Q Consensus 60 ~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~l~l~~~-~l~~~--~~~~~~~~~L~~ 133 (245)
..+++++++...++ .+...+..|.+|+.|.+.++.+. .+...+....+|+.++++.+ .+++. .--+..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46889999988877 44566788899999999998876 35556777788999998776 34432 223677888888
Q ss_pred eecccCcCCC--chhhhcC-CCCCcEEecCCCcc--ccc-cCccCCCCCCCCEEEccCCccc--cccccccCCCCccEEE
Q psy4258 134 LYANNNRITS--LDGLLRG-LTKLQVFNMDFNQI--TMV-RRDEFQNLHNLDSISLQNNQIT--SMNSSLSGLTKLAYLY 205 (245)
Q Consensus 134 l~l~~~~~~~--~~~~~~~-~~~l~~L~l~~~~l--~~~-~~~~~~~~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~ 205 (245)
|+++.|.... +...+.. -..++.|+++++.- ... .......++.+.+|++++|..- +...++..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8888886542 1111111 24677778877632 111 1112346788888888877543 3345566778888888
Q ss_pred cCCCcccccchhh---hcCCCcccEEEccCC
Q psy4258 206 LSHNQLTEFLLDD---IRGLKRLRTVDLSYN 233 (245)
Q Consensus 206 l~~n~l~~~~~~~---l~~~~~L~~l~l~~n 233 (245)
+++|.... |.. +...|+|.+|++-++
T Consensus 345 lsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 88886443 333 344567778877654
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=1.9e-06 Score=69.57 Aligned_cols=130 Identities=20% Similarity=0.290 Sum_probs=76.8
Q ss_pred CCcccceeeccccccccccCCCCCCcccEEEecCC-ccccchhhhcCCCCCcEEEeecc-ccCCccccccCCCCccEEEe
Q psy4258 36 GTPALITLLLVNNNITHIHENAFPPTIRKLHVGFN-NLTSLNNSLRGLTDLNWLFLNNN-RLKSLEGQLGTLSKLQLLVI 113 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~l~l 113 (245)
.+++++.|++++|.++.+| .++++|+.|.+++| .++.+|+.+ ..+|++|.+++| .+..+| +.|+.|++
T Consensus 50 ~~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L 119 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEI 119 (426)
T ss_pred HhcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEe
Confidence 3567888888888777776 46677888888764 455666544 257888888877 555554 34666666
Q ss_pred ccccc---ccCChhhhcccccceeecccCcCC---CchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCC
Q psy4258 114 EQNQL---EALPSDIQLFSQLGSLYANNNRIT---SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186 (245)
Q Consensus 114 ~~~~l---~~~~~~~~~~~~L~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 186 (245)
..+.. ..+|. +|+.|.+..++.. .++..+ .++|++|++++|.....+ ..+. .+|+.|+++.+
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP-~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILP-EKLP--ESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcccCc-cccc--ccCcEEEeccc
Confidence 65443 34444 3445555332211 112111 257788888777654432 2233 56777777665
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=8.4e-07 Score=48.30 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=23.2
Q ss_pred cccEEEecCCccccchhhhcCCCCCcEEEeeccccCCcc
Q psy4258 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99 (245)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 99 (245)
+|++|++++|+++.+|..+.++++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 466666666666666655666666666666666665543
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=7.7e-07 Score=48.45 Aligned_cols=39 Identities=36% Similarity=0.508 Sum_probs=19.8
Q ss_pred CccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccc
Q psy4258 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 200 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
+|+.|++++|++++. +..+..+++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDL-PPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCccc-CchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555542 334555555555555555555554
No 56
>KOG1644|consensus
Probab=98.33 E-value=8.4e-07 Score=63.88 Aligned_cols=101 Identities=26% Similarity=0.378 Sum_probs=47.0
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccC-CCCccEEEecccccccCC--hhhhcccccceeec
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYA 136 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~l~~~~--~~~~~~~~L~~l~l 136 (245)
.....++++.|.+..++. |..++.|.+|.+++|.+..+.+.+.. +++|..|.+.+|++.++. ..+..|++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 344444444444443321 33444555555555555544433333 244555555555444321 12344555555555
Q ss_pred ccCcCCCch----hhhcCCCCCcEEecCC
Q psy4258 137 NNNRITSLD----GLLRGLTKLQVFNMDF 161 (245)
Q Consensus 137 ~~~~~~~~~----~~~~~~~~l~~L~l~~ 161 (245)
-+|.+.+.. ..+..+++++.||+.+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 555554422 2344455566665554
No 57
>KOG1644|consensus
Probab=98.28 E-value=1.4e-06 Score=62.84 Aligned_cols=122 Identities=25% Similarity=0.355 Sum_probs=64.3
Q ss_pred CcEEEeeccccCCccccccC-CCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcC-CCCCcEEecCCC
Q psy4258 85 LNWLFLNNNRLKSLEGQLGT-LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRG-LTKLQVFNMDFN 162 (245)
Q Consensus 85 L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~l~~L~l~~~ 162 (245)
-+.+++++.++..+.. ++. ......+++.+|.+..++ .+..++.|.+|.++.|++..+...+.. ++++++|.+.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 4556666665543322 222 244556666666554331 344555666666666666665443332 345666666666
Q ss_pred ccccccC-ccCCCCCCCCEEEccCCccccccc----cccCCCCccEEEcCC
Q psy4258 163 QITMVRR-DEFQNLHNLDSISLQNNQITSMNS----SLSGLTKLAYLYLSH 208 (245)
Q Consensus 163 ~l~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~~~L~~L~l~~ 208 (245)
.+..+.. ..+..+++|+.|.+-+|.++.-.. .+..+|+++.||+.+
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6544321 234455666666666666653321 234556666666554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=7.9e-06 Score=66.12 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=85.2
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccc-cCCccccccCCCCccEEEeccc-ccccCChhhhcccccceeecc
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNR-LKSLEGQLGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYAN 137 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l~~~-~l~~~~~~~~~~~~L~~l~l~ 137 (245)
.+++.|++++|.++.+|. -..+|+.|.+++|. ++.+|+.+ .++|+.|.+.+| .+..+|. +|+.|.+.
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeC
Confidence 678899999998888872 23579999998754 55666544 268999999887 5656654 46666676
Q ss_pred cCcCCCchhhhcCCCCCcEEecCCCc-cccc-cCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCc
Q psy4258 138 NNRITSLDGLLRGLTKLQVFNMDFNQ-ITMV-RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ 210 (245)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~l~~~~-l~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~ 210 (245)
.+....++.. .++|+.|.+..+. .... .+..+ .++|+.|++.+|....+|..+ ..+|+.|.++.+.
T Consensus 121 ~n~~~~L~~L---PssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 121 GSATDSIKNV---PNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKL--PESLQSITLHIEQ 188 (426)
T ss_pred CCCCcccccC---cchHhheecccccccccccccccc--CCcccEEEecCCCcccCcccc--cccCcEEEecccc
Confidence 6554333221 1245566664322 1110 11112 267999999998877666443 3688999887763
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.16 E-value=1.3e-05 Score=54.88 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=52.7
Q ss_pred ccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCC
Q psy4258 8 EDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTD 84 (245)
Q Consensus 8 ~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~ 84 (245)
-++++.+|+.+++.. .+..+....|..+.+|+.+.+.++ +..++..+|. ++++.+.+.. .+..++ ..|..+.+
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 455677788888765 467777777777777888877764 6677766665 4677777755 444443 45556777
Q ss_pred CcEEEeeccccCCccc-cccCCCCccEEEecc
Q psy4258 85 LNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQ 115 (245)
Q Consensus 85 L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~ 115 (245)
++.+.+..+ +..++. .+.+. .++.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777777554 444433 23333 666666554
No 60
>KOG3665|consensus
Probab=97.80 E-value=1.4e-05 Score=69.59 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=88.8
Q ss_pred CcccEEEecCCccc--cch-hhhcCCCCCcEEEeeccccC--CccccccCCCCccEEEecccccccCChhhhccccccee
Q psy4258 60 PTIRKLHVGFNNLT--SLN-NSLRGLTDLNWLFLNNNRLK--SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 134 (245)
Q Consensus 60 ~~L~~L~l~~~~~~--~~~-~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l 134 (245)
.+|++|+++|...- ..+ ..-..+|.|+.|.+.+-.+. ++.....++|+|..||++++.+..+ .+++++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 68888888885432 222 22357788999988886654 2334456678899999998888766 678888888888
Q ss_pred ecccCcCCCch--hhhcCCCCCcEEecCCCcccccc---C---ccCCCCCCCCEEEccCCccc
Q psy4258 135 YANNNRITSLD--GLLRGLTKLQVFNMDFNQITMVR---R---DEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 135 ~l~~~~~~~~~--~~~~~~~~l~~L~l~~~~l~~~~---~---~~~~~~~~L~~L~l~~~~i~ 189 (245)
.+.+=.+.... ..++.+++|+.||++.......+ . ..-..+|.|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 87766555432 34677889999999876543322 1 11234678889998887776
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.80 E-value=0.00015 Score=49.56 Aligned_cols=62 Identities=24% Similarity=0.395 Sum_probs=31.0
Q ss_pred cCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCCcEEEeec
Q psy4258 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNN 92 (245)
Q Consensus 29 ~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 92 (245)
++..+|.++.+|+.+.+.+ .+..+...+|. .+++.+.+..+ +..++ .+|..+.+++.+.+.+
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 4455677777888888774 46667766665 45666666553 44444 4455555566666643
No 62
>KOG3665|consensus
Probab=97.78 E-value=1.3e-05 Score=69.87 Aligned_cols=131 Identities=23% Similarity=0.286 Sum_probs=59.1
Q ss_pred CCCcEEEeecccc--CCccccccC-CCCccEEEecccccc--cCChhhhcccccceeecccCcCCCchhhhcCCCCCcEE
Q psy4258 83 TDLNWLFLNNNRL--KSLEGQLGT-LSKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157 (245)
Q Consensus 83 ~~L~~L~l~~~~l--~~~~~~~~~-~~~L~~l~l~~~~l~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L 157 (245)
.+|++|++++... ..++..++. +|.|+.|.+.+-.+. .+..-..++++|..|+++++++..+ ..++.+.+|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4556666655432 123333333 355666555554332 1122233455555555555555555 334555555555
Q ss_pred ecCCCccccc-cCccCCCCCCCCEEEccCCcccccc-------ccccCCCCccEEEcCCCccccc
Q psy4258 158 NMDFNQITMV-RRDEFQNLHNLDSISLQNNQITSMN-------SSLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 158 ~l~~~~l~~~-~~~~~~~~~~L~~L~l~~~~i~~~~-------~~~~~~~~L~~L~l~~n~l~~~ 214 (245)
.+.+=.+... .-..+..+++|+.||++.......+ +.-..+|.|+.||.+++.+.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 5544333221 1123334555555555554333211 1112245555555555555443
No 63
>KOG4341|consensus
Probab=97.58 E-value=1.1e-06 Score=69.85 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=33.7
Q ss_pred ccEEeeCCCCCceecCCCCC-CCCcccceeeccccc-cccccC---CCCCCcccEEEecCC-ccccch--hhhcCCCCCc
Q psy4258 15 LNLIDLEPETGSHPLTSDDL-KGTPALITLLLVNNN-ITHIHE---NAFPPTIRKLHVGFN-NLTSLN--NSLRGLTDLN 86 (245)
Q Consensus 15 L~~l~l~~~~~l~~~~~~~~-~~~~~L~~l~l~~~~-i~~~~~---~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~L~ 86 (245)
|+.+.+.|+..+..-...++ ..+++++.|++.++. +++... ..+.++++++++..| .++... .-...+++|+
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 45555555433332222222 245555555555543 332211 122355555555553 233211 1223455555
Q ss_pred EEEeecc
Q psy4258 87 WLFLNNN 93 (245)
Q Consensus 87 ~L~l~~~ 93 (245)
++.++++
T Consensus 220 ~lNlSwc 226 (483)
T KOG4341|consen 220 YLNLSWC 226 (483)
T ss_pred HhhhccC
Confidence 5555555
No 64
>KOG2123|consensus
Probab=97.44 E-value=6.1e-06 Score=62.58 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=78.8
Q ss_pred hcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccc--cccCCCCccE
Q psy4258 126 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAY 203 (245)
Q Consensus 126 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~L~~ 203 (245)
+.+.+.+.|++++|.+.++.- ...++.++.|.++-|.++.+. .+..|.+|+.|+|..|.|.++.+ -+.++++|+.
T Consensus 16 sdl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345678889999999998864 567899999999999888764 47888999999999999997754 4578899999
Q ss_pred EEcCCCcccccch-----hhhcCCCcccEEE
Q psy4258 204 LYLSHNQLTEFLL-----DDIRGLKRLRTVD 229 (245)
Q Consensus 204 L~l~~n~l~~~~~-----~~l~~~~~L~~l~ 229 (245)
|.|..|+-.+..+ ..+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999887766433 2455667776664
No 65
>KOG2123|consensus
Probab=97.30 E-value=9.9e-06 Score=61.45 Aligned_cols=99 Identities=22% Similarity=0.268 Sum_probs=67.4
Q ss_pred CCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccc--cccCCCCccEEEe
Q psy4258 36 GTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG--QLGTLSKLQLLVI 113 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~l~l 113 (245)
.+.+.++|++.+|++.+|....-.+.|+.|.|+-|.++.+ ..+..|..|++|++..|.|.++.. -+.++|+|+.|-+
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 3556788888888888876554447888888888888877 446788888888888888876643 3556677777777
Q ss_pred cccccc-cCCh-----hhhcccccceee
Q psy4258 114 EQNQLE-ALPS-----DIQLFSQLGSLY 135 (245)
Q Consensus 114 ~~~~l~-~~~~-----~~~~~~~L~~l~ 135 (245)
..|... +.+. .+..+++|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 666433 2221 244556666554
No 66
>KOG2739|consensus
Probab=97.15 E-value=0.00041 Score=52.25 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=57.1
Q ss_pred CcccceeeccccccccccCCCCCCcccEEEecCC--ccc-cchhhhcCCCCCcEEEeeccccCCcc--ccccCCCCccEE
Q psy4258 37 TPALITLLLVNNNITHIHENAFPPTIRKLHVGFN--NLT-SLNNSLRGLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLL 111 (245)
Q Consensus 37 ~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~--~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~l 111 (245)
+.+|+.+++.+.+++.+..-...++|++|.++.| ++. .++.....+++|+++.+++|+++.+. ..+..+++|..|
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 4556666666666665554444477777777777 333 33333345577777777777766421 123344556666
Q ss_pred EecccccccCCh----hhhcccccceeecccC
Q psy4258 112 VIEQNQLEALPS----DIQLFSQLGSLYANNN 139 (245)
Q Consensus 112 ~l~~~~l~~~~~----~~~~~~~L~~l~l~~~ 139 (245)
++..|....+.. .+.-+++|++++-.+.
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 666665443321 1344556665554433
No 67
>KOG2739|consensus
Probab=97.14 E-value=0.00012 Score=54.97 Aligned_cols=82 Identities=26% Similarity=0.243 Sum_probs=39.3
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeecccc--C-CccccccCCCCccEEEecccccccC--Chhhhccccccee
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRL--K-SLEGQLGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSL 134 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l--~-~~~~~~~~~~~L~~l~l~~~~l~~~--~~~~~~~~~L~~l 134 (245)
..++.+.+.+.+++.+. .+..+++|++|.++.|.. . .++.....+|+|+++++++|.+..+ -..+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 34555555555554442 234556666666666632 2 2222333346666666666655421 1123334445555
Q ss_pred ecccCcCC
Q psy4258 135 YANNNRIT 142 (245)
Q Consensus 135 ~l~~~~~~ 142 (245)
++..|...
T Consensus 122 dl~n~~~~ 129 (260)
T KOG2739|consen 122 DLFNCSVT 129 (260)
T ss_pred hcccCCcc
Confidence 55555433
No 68
>KOG4341|consensus
Probab=96.97 E-value=3.6e-05 Score=61.57 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=46.2
Q ss_pred ccccccEEeeCCCCCceecCCCCCC-CCcccceeeccccc-cccccCC---CCCCcccEEEecCCcc-c--cchhhhcCC
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLK-GTPALITLLLVNNN-ITHIHEN---AFPPTIRKLHVGFNNL-T--SLNNSLRGL 82 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~-~~~~L~~l~l~~~~-i~~~~~~---~~~~~L~~L~l~~~~~-~--~~~~~~~~~ 82 (245)
++|++++|++.+|.++++.....++ .+++++.+++..|. +++..-. .-+++|.++++++|.- . .+.....++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 7888888888886666544433332 46777777777743 4443221 1126777777777632 2 222333444
Q ss_pred CCCcEEEeecc
Q psy4258 83 TDLNWLFLNNN 93 (245)
Q Consensus 83 ~~L~~L~l~~~ 93 (245)
..++.+...+|
T Consensus 242 ~~l~~~~~kGC 252 (483)
T KOG4341|consen 242 KELEKLSLKGC 252 (483)
T ss_pred hhhhhhhhccc
Confidence 44555544443
No 69
>KOG1947|consensus
Probab=96.73 E-value=0.00019 Score=60.48 Aligned_cols=106 Identities=18% Similarity=0.085 Sum_probs=55.8
Q ss_pred cccccEEeeCCCCCceecC-CCCCCCCcccceeecccc-c-ccccc-----CCCCCCcccEEEecCCc-cccch-hhh-c
Q psy4258 12 AVALNLIDLEPETGSHPLT-SDDLKGTPALITLLLVNN-N-ITHIH-----ENAFPPTIRKLHVGFNN-LTSLN-NSL-R 80 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~~~~-~~~~~~~~~L~~l~l~~~-~-i~~~~-----~~~~~~~L~~L~l~~~~-~~~~~-~~~-~ 80 (245)
+++|+.+.+.++..+.... ......+++|+.|+++++ . +...+ .....++++.++++++. ++... .++ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667777777654554422 122345667777777652 1 11111 11112667777777665 44322 222 3
Q ss_pred CCCCCcEEEeeccc-cC--CccccccCCCCccEEEecccc
Q psy4258 81 GLTDLNWLFLNNNR-LK--SLEGQLGTLSKLQLLVIEQNQ 117 (245)
Q Consensus 81 ~~~~L~~L~l~~~~-l~--~~~~~~~~~~~L~~l~l~~~~ 117 (245)
.+++|++|.+.++. ++ .+......++.|+.++++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 46777777766665 33 223334455667777777663
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.004 Score=28.11 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=7.2
Q ss_pred ccEEEecCCccccchh
Q psy4258 62 IRKLHVGFNNLTSLNN 77 (245)
Q Consensus 62 L~~L~l~~~~~~~~~~ 77 (245)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3444444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0034 Score=28.35 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=12.0
Q ss_pred CCcEEEeeccccCCcccccc
Q psy4258 84 DLNWLFLNNNRLKSLEGQLG 103 (245)
Q Consensus 84 ~L~~L~l~~~~l~~~~~~~~ 103 (245)
+|++|++++|.++.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666655543
No 72
>KOG3864|consensus
Probab=95.49 E-value=0.0028 Score=46.15 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=55.9
Q ss_pred CCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccc---ccccccCCCCccEEEcCCC-cccccchhhhcCCCcccE
Q psy4258 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS---MNSSLSGLTKLAYLYLSHN-QLTEFLLDDIRGLKRLRT 227 (245)
Q Consensus 152 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~---~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~ 227 (245)
..+++++-+++.+.......+.++++++.|.+.+|.-.+ +...-...++|+.|++++| .|++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 456778888877776666677777888888887776442 1111124578888888888 677766677777788777
Q ss_pred EEccC
Q psy4258 228 VDLSY 232 (245)
Q Consensus 228 l~l~~ 232 (245)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 76654
No 73
>KOG4308|consensus
Probab=95.36 E-value=8.8e-05 Score=62.03 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=15.2
Q ss_pred CccEEEcCCCcccccc----hhhhcCCCcccEEEccCCCCc
Q psy4258 200 KLAYLYLSHNQLTEFL----LDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 200 ~L~~L~l~~n~l~~~~----~~~l~~~~~L~~l~l~~n~l~ 236 (245)
.++.++++.|.+++.. ...+..++.+..+.+.+|.+.
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3444444444444322 122233344444444444443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.36 E-value=0.011 Score=24.78 Aligned_cols=15 Identities=47% Similarity=0.771 Sum_probs=6.4
Q ss_pred cccEEEccCCCCccc
Q psy4258 224 RLRTVDLSYNKINKF 238 (245)
Q Consensus 224 ~L~~l~l~~n~l~~~ 238 (245)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555544
No 75
>KOG4308|consensus
Probab=95.29 E-value=0.00016 Score=60.48 Aligned_cols=175 Identities=28% Similarity=0.301 Sum_probs=102.7
Q ss_pred cceeeccccccccccCCCC------CCcccEEEecCCccccc-----hhhhcCC-CCCcEEEeeccccC-----Cccccc
Q psy4258 40 LITLLLVNNNITHIHENAF------PPTIRKLHVGFNNLTSL-----NNSLRGL-TDLNWLFLNNNRLK-----SLEGQL 102 (245)
Q Consensus 40 L~~l~l~~~~i~~~~~~~~------~~~L~~L~l~~~~~~~~-----~~~~~~~-~~L~~L~l~~~~l~-----~~~~~~ 102 (245)
+..+.+.+|.+..-..... .++|+.|++++|.+... -..+... +.+++|.+..|.+. .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6666777776655432211 15777777777766621 1223332 45666666666654 233445
Q ss_pred cCCCCccEEEecccccc-----cCChhhh----cccccceeecccCcCCC-----chhhhcCCCC-CcEEecCCCccccc
Q psy4258 103 GTLSKLQLLVIEQNQLE-----ALPSDIQ----LFSQLGSLYANNNRITS-----LDGLLRGLTK-LQVFNMDFNQITMV 167 (245)
Q Consensus 103 ~~~~~L~~l~l~~~~l~-----~~~~~~~----~~~~L~~l~l~~~~~~~-----~~~~~~~~~~-l~~L~l~~~~l~~~ 167 (245)
.....++.+++..|.+. .++..+. ...+++++.+..+.+.. +...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 55677777777777653 1222333 34567777777776663 2344555555 55677777766543
Q ss_pred c----CccCCCC-CCCCEEEccCCcccc-----ccccccCCCCccEEEcCCCccccc
Q psy4258 168 R----RDEFQNL-HNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 168 ~----~~~~~~~-~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~n~l~~~ 214 (245)
. ...+... +.++.+++..|.+.+ +.+.+..++.++.+.+++|++...
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 1 1233333 566788888887773 345556677888888888887764
No 76
>KOG1947|consensus
Probab=94.80 E-value=0.0031 Score=53.13 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=49.8
Q ss_pred CcccEEEecCC-cccc--chhhhcCCCCCcEEEeecc-c-cCCc----cccccCCCCccEEEecccc-ccc--CChhhhc
Q psy4258 60 PTIRKLHVGFN-NLTS--LNNSLRGLTDLNWLFLNNN-R-LKSL----EGQLGTLSKLQLLVIEQNQ-LEA--LPSDIQL 127 (245)
Q Consensus 60 ~~L~~L~l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~-l~~~----~~~~~~~~~L~~l~l~~~~-l~~--~~~~~~~ 127 (245)
+.++.+.+.++ .+.. +......+++|+.|+++.+ . .... ......+++|+.+++.++. +.. +..-...
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 45555555554 2332 2344456666666666652 1 1111 1122334666666666554 331 1111223
Q ss_pred ccccceeecccCc-CCC--chhhhcCCCCCcEEecCCCc
Q psy4258 128 FSQLGSLYANNNR-ITS--LDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 128 ~~~L~~l~l~~~~-~~~--~~~~~~~~~~l~~L~l~~~~ 163 (245)
+++|+.|.+..+. +++ +......+++|++|++++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 5666666655554 333 33344455667777776654
No 77
>KOG3864|consensus
Probab=93.84 E-value=0.0069 Score=44.16 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=47.6
Q ss_pred ccEEeeCCCCCceecCCCCCCCCcccceeeccccc-cccccC---CCCCCcccEEEecCC-ccccch-hhhcCCCCCcEE
Q psy4258 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNN-ITHIHE---NAFPPTIRKLHVGFN-NLTSLN-NSLRGLTDLNWL 88 (245)
Q Consensus 15 L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~-i~~~~~---~~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~L~~L 88 (245)
++.++=++ ..+.....+-+..++.++.+.+.+|. +.+..- ....++|+.|++++| +|++-. ..+..+++|+.|
T Consensus 103 IeaVDAsd-s~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCC-chHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 56666666 66666655666777777778887774 322211 113478888888876 455433 445666777776
Q ss_pred Eeecc
Q psy4258 89 FLNNN 93 (245)
Q Consensus 89 ~l~~~ 93 (245)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66543
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.83 E-value=0.044 Score=25.67 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=11.1
Q ss_pred cccEEEccCCCCcccccCCC
Q psy4258 224 RLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 224 ~L~~l~l~~n~l~~~~~~~~ 243 (245)
+|+.|++++|.++.++...+
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 45555666666665554443
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.83 E-value=0.044 Score=25.67 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=11.1
Q ss_pred cccEEEccCCCCcccccCCC
Q psy4258 224 RLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 224 ~L~~l~l~~n~l~~~~~~~~ 243 (245)
+|+.|++++|.++.++...+
T Consensus 3 ~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCCcCCHHHc
Confidence 45555666666665554443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.93 E-value=0.051 Score=24.90 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=10.8
Q ss_pred CCccEEEcCCCcccccchhhh
Q psy4258 199 TKLAYLYLSHNQLTEFLLDDI 219 (245)
Q Consensus 199 ~~L~~L~l~~n~l~~~~~~~l 219 (245)
++|+.|++++|.+++....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666665444433
No 81
>KOG0473|consensus
Probab=89.81 E-value=0.0064 Score=45.45 Aligned_cols=81 Identities=17% Similarity=0.117 Sum_probs=49.7
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccC
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 139 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~ 139 (245)
...+.|+++.++...+...|+.+..+..|+++.+.+..+|..+.....+..++...|.....|......+.++.++..++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 55666666666666555555555566666666666666666666555555566666666666666666666666665555
Q ss_pred c
Q psy4258 140 R 140 (245)
Q Consensus 140 ~ 140 (245)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 82
>KOG0473|consensus
Probab=87.49 E-value=0.0083 Score=44.89 Aligned_cols=93 Identities=10% Similarity=0.084 Sum_probs=71.3
Q ss_pred ceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCcccccc
Q psy4258 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLG 103 (245)
Q Consensus 26 l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 103 (245)
++.++.-.+......+.||++.+.+-..... |. ..+..|+++.+.+..+|..+.....++++....|..+..|.++.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 3445555556667788888888865433321 22 56778899999999899888888889999999999998999999
Q ss_pred CCCCccEEEecccccc
Q psy4258 104 TLSKLQLLVIEQNQLE 119 (245)
Q Consensus 104 ~~~~L~~l~l~~~~l~ 119 (245)
..+++++++...+.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999998887654
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.94 E-value=0.45 Score=22.34 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=13.6
Q ss_pred CcccEEEccCCCCccccc
Q psy4258 223 KRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 223 ~~L~~l~l~~n~l~~~~~ 240 (245)
++|+.|++++|+++.+|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356778888888888775
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.04 E-value=1.3 Score=20.79 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=11.3
Q ss_pred CcccEEEccCCCCccccc
Q psy4258 223 KRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 223 ~~L~~l~l~~n~l~~~~~ 240 (245)
.+|+.|+++.|.|+.++.
T Consensus 2 ~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 2 TNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CccCEEECCCCccceecC
Confidence 356667777777666643
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.63 E-value=0.99 Score=21.50 Aligned_cols=17 Identities=35% Similarity=0.239 Sum_probs=10.0
Q ss_pred CCccEEEcCCCcccccc
Q psy4258 199 TKLAYLYLSHNQLTEFL 215 (245)
Q Consensus 199 ~~L~~L~l~~n~l~~~~ 215 (245)
++|+.|+|++|.+....
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 34666666666665543
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.78 E-value=1.2 Score=20.63 Aligned_cols=15 Identities=27% Similarity=0.164 Sum_probs=7.2
Q ss_pred ccccEEeeCCCCCce
Q psy4258 13 VALNLIDLEPETGSH 27 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~ 27 (245)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555543343
No 87
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=65.94 E-value=9.4 Score=20.32 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=13.8
Q ss_pred ccceeeccccccccccCCCCCCcccEEEec
Q psy4258 39 ALITLLLVNNNITHIHENAFPPTIRKLHVG 68 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~ 68 (245)
+++.|.+.+..=..+..+.+++++++|.++
T Consensus 13 ~l~~L~~g~~fn~~i~~~~lP~sl~~L~fg 42 (44)
T PF05725_consen 13 SLKSLIFGSSFNQPIEPGSLPNSLKSLSFG 42 (44)
T ss_pred CCeEEEECCccCccCCCCccCCCceEEEee
Confidence 345555533322333444455555555543
No 88
>KOG3763|consensus
Probab=62.60 E-value=3.7 Score=35.10 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=29.3
Q ss_pred CCCCCcEEecCCCccccccC--ccCCCCCCCCEEEccCC--cccccccccc--CCCCccEEEcCCCcccc
Q psy4258 150 GLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNN--QITSMNSSLS--GLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 150 ~~~~l~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~--~i~~~~~~~~--~~~~L~~L~l~~n~l~~ 213 (245)
+.+.+..+++++|.+..+.. ......|+|..|+|++| .+... .++. ....|++|.+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCcccc
Confidence 34555556666665543321 11223455666666666 33321 1111 12345666666666543
No 89
>KOG3763|consensus
Probab=50.91 E-value=8.9 Score=32.95 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=42.3
Q ss_pred CCCCCCEEEccCCccccccc---cccCCCCccEEEcCCC--cccccchhhhcCC--CcccEEEccCCCCcc
Q psy4258 174 NLHNLDSISLQNNQITSMNS---SLSGLTKLAYLYLSHN--QLTEFLLDDIRGL--KRLRTVDLSYNKINK 237 (245)
Q Consensus 174 ~~~~L~~L~l~~~~i~~~~~---~~~~~~~L~~L~l~~n--~l~~~~~~~l~~~--~~L~~l~l~~n~l~~ 237 (245)
..+.+..+++++|++..+.. .-...|++..|+|++| .+.. ..++..+ ..|++|-+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 45678889999999886532 2234689999999999 3433 2344433 346777788888753
Done!