Query psy4258
Match_columns 245
No_of_seqs 148 out of 2224
Neff 10.9
Searched_HMMs 29240
Date Fri Aug 16 20:48:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xku_A Decorin; proteoglycan, 100.0 8.4E-29 2.9E-33 196.8 22.1 232 4-241 43-281 (330)
2 2z66_A Variable lymphocyte rec 100.0 1.3E-29 4.6E-34 199.3 16.5 235 3-238 18-263 (306)
3 3zyj_A Leucine-rich repeat-con 100.0 7.9E-29 2.7E-33 204.3 19.8 233 3-237 54-293 (440)
4 3zyi_A Leucine-rich repeat-con 100.0 1.1E-28 3.7E-33 204.1 20.2 233 3-237 65-304 (452)
5 2ft3_A Biglycan; proteoglycan, 100.0 9.2E-29 3.2E-33 196.7 19.0 230 4-240 45-281 (332)
6 1xku_A Decorin; proteoglycan, 100.0 3.6E-28 1.2E-32 193.1 21.5 227 9-239 72-309 (330)
7 4fcg_A Uncharacterized protein 100.0 1.9E-28 6.5E-33 194.5 18.6 228 11-240 79-318 (328)
8 3v47_A TOLL-like receptor 5B a 100.0 6.8E-28 2.3E-32 199.4 22.2 95 148-242 295-390 (455)
9 1ogq_A PGIP-2, polygalacturona 100.0 7.4E-29 2.5E-33 195.7 14.9 223 13-237 50-282 (313)
10 2z80_A TOLL-like receptor 2, v 100.0 5.4E-29 1.8E-33 199.7 13.9 235 3-238 42-316 (353)
11 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-28 1.3E-32 193.1 17.3 224 9-237 74-308 (332)
12 2id5_A Lingo-1, leucine rich r 100.0 1.5E-27 5.3E-32 198.5 21.0 239 3-242 22-291 (477)
13 3o6n_A APL1; leucine-rich repe 100.0 3.2E-27 1.1E-31 191.8 20.4 228 10-240 66-335 (390)
14 3t6q_A CD180 antigen; protein- 100.0 1.1E-26 3.7E-31 198.7 22.8 232 4-236 24-338 (606)
15 1ozn_A Reticulon 4 receptor; N 100.0 1E-26 3.5E-31 181.1 20.7 216 17-236 15-238 (285)
16 3rgz_A Protein brassinosteroid 100.0 1.2E-27 4.3E-32 209.4 16.7 226 11-237 416-718 (768)
17 2id5_A Lingo-1, leucine rich r 100.0 8.7E-27 3E-31 194.0 21.0 228 9-237 76-334 (477)
18 3v47_A TOLL-like receptor 5B a 100.0 1.1E-26 3.8E-31 192.1 20.3 116 124-239 294-411 (455)
19 2z66_A Variable lymphocyte rec 100.0 1.3E-26 4.4E-31 182.3 19.5 223 16-242 10-242 (306)
20 1ozn_A Reticulon 4 receptor; N 100.0 4.3E-27 1.5E-31 183.2 16.4 211 3-214 22-240 (285)
21 1ogq_A PGIP-2, polygalacturona 99.9 1E-27 3.4E-32 189.2 12.4 227 9-238 72-307 (313)
22 3oja_B Anopheles plasmodium-re 99.9 2.3E-26 7.8E-31 196.3 21.0 225 11-240 73-341 (597)
23 4fmz_A Internalin; leucine ric 99.9 6.6E-26 2.3E-30 181.2 21.1 223 9-240 84-328 (347)
24 4fcg_A Uncharacterized protein 99.9 1.2E-26 4.2E-31 184.0 15.4 200 37-237 80-291 (328)
25 3rgz_A Protein brassinosteroid 99.9 2E-26 6.9E-31 201.8 17.9 226 12-238 393-695 (768)
26 4fmz_A Internalin; leucine ric 99.9 1.4E-25 4.9E-30 179.3 21.0 216 11-237 64-279 (347)
27 4ecn_A Leucine-rich repeat pro 99.9 1E-25 3.5E-30 197.8 21.7 229 10-242 570-825 (876)
28 4eco_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 196.5 18.2 229 10-242 327-585 (636)
29 2z62_A TOLL-like receptor 4, v 99.9 5.9E-26 2E-30 176.0 16.9 209 4-214 19-239 (276)
30 3t6q_A CD180 antigen; protein- 99.9 1.5E-25 5E-30 191.7 20.6 228 10-239 275-516 (606)
31 3o6n_A APL1; leucine-rich repe 99.9 2.2E-25 7.4E-30 181.0 19.9 224 9-238 89-354 (390)
32 3vq2_A TLR4, TOLL-like recepto 99.9 1.9E-25 6.5E-30 191.0 19.9 226 11-241 305-539 (606)
33 4eco_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 196.5 14.7 228 10-240 203-474 (636)
34 1ziw_A TOLL-like receptor 3; i 99.9 4.1E-25 1.4E-29 191.3 21.7 231 9-240 325-601 (680)
35 3zyj_A Leucine-rich repeat-con 99.9 4.6E-25 1.6E-29 181.8 21.0 223 15-243 45-275 (440)
36 1h6u_A Internalin H; cell adhe 99.9 2E-26 7E-31 181.2 12.0 193 11-213 39-231 (308)
37 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-25 3.6E-30 195.0 17.5 235 4-239 16-288 (680)
38 3o53_A Protein LRIM1, AGAP0063 99.9 5.9E-26 2E-30 179.4 14.6 216 11-236 32-250 (317)
39 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-25 4.9E-30 191.8 17.2 228 10-242 282-516 (606)
40 2z80_A TOLL-like receptor 2, v 99.9 7.4E-26 2.5E-30 181.4 14.5 229 11-243 29-297 (353)
41 1o6v_A Internalin A; bacterial 99.9 4.2E-25 1.4E-29 183.3 19.4 222 8-241 172-393 (466)
42 3zyi_A Leucine-rich repeat-con 99.9 7.7E-25 2.7E-29 181.0 20.9 223 15-243 56-286 (452)
43 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-25 7.1E-30 187.5 17.6 111 5-118 13-127 (520)
44 3oja_A Leucine-rich immune mol 99.9 2.2E-25 7.5E-30 185.7 17.0 216 11-236 32-250 (487)
45 3oja_B Anopheles plasmodium-re 99.9 4.2E-25 1.4E-29 188.5 19.1 223 9-237 95-359 (597)
46 1wwl_A Monocyte differentiatio 99.9 1.8E-26 6.1E-31 182.0 9.7 221 13-238 63-311 (312)
47 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-24 3.6E-29 184.9 20.9 113 4-119 43-159 (562)
48 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.3E-24 7.8E-29 182.8 22.9 86 9-96 72-159 (562)
49 3j0a_A TOLL-like receptor 5; m 99.9 7.2E-25 2.5E-29 193.8 20.5 236 4-241 16-356 (844)
50 1p9a_G Platelet glycoprotein I 99.9 7.8E-25 2.7E-29 170.7 18.1 200 9-213 6-209 (290)
51 4g8a_A TOLL-like receptor 4; l 99.9 3E-24 1E-28 184.1 23.4 134 4-138 43-182 (635)
52 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-24 4.1E-29 179.8 19.8 215 6-240 35-250 (457)
53 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-25 5.4E-30 189.4 14.3 163 3-166 16-210 (549)
54 1o6v_A Internalin A; bacterial 99.9 3.1E-24 1.1E-28 178.1 21.2 82 11-96 66-147 (466)
55 2xwt_C Thyrotropin receptor; s 99.9 6.4E-25 2.2E-29 166.7 15.5 190 39-233 32-236 (239)
56 4ecn_A Leucine-rich repeat pro 99.9 2.7E-25 9.1E-30 195.1 15.2 177 10-189 445-657 (876)
57 1p9a_G Platelet glycoprotein I 99.9 2E-24 6.7E-29 168.5 17.6 201 34-237 6-209 (290)
58 2z63_A TOLL-like receptor 4, v 99.9 7.9E-25 2.7E-29 185.8 16.3 225 11-238 280-533 (570)
59 2o6q_A Variable lymphocyte rec 99.9 5.1E-24 1.7E-28 164.6 19.3 196 14-213 17-219 (270)
60 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.7E-29 183.2 16.6 106 9-118 41-150 (520)
61 3j0a_A TOLL-like receptor 5; m 99.9 4.5E-24 1.5E-28 188.7 20.6 110 130-239 267-378 (844)
62 2z63_A TOLL-like receptor 4, v 99.9 3.3E-24 1.1E-28 182.0 17.9 208 6-216 318-535 (570)
63 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-25 5.6E-30 176.8 8.5 213 9-231 54-270 (317)
64 2xwt_C Thyrotropin receptor; s 99.9 3.5E-24 1.2E-28 162.6 15.2 199 42-243 15-225 (239)
65 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-24 4.1E-29 184.0 13.8 134 9-143 46-210 (549)
66 1h6u_A Internalin H; cell adhe 99.9 5E-24 1.7E-28 167.6 15.7 222 7-240 13-234 (308)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-23 6.4E-28 177.8 20.4 215 4-239 52-300 (622)
68 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-23 1.2E-27 171.1 20.6 209 9-238 60-269 (457)
69 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-23 5E-28 179.9 18.6 109 9-118 72-185 (635)
70 3oja_A Leucine-rich immune mol 99.9 2.8E-24 9.5E-29 179.0 12.5 213 9-231 54-270 (487)
71 3rfs_A Internalin B, repeat mo 99.9 1.6E-24 5.5E-29 167.5 9.1 203 11-222 39-245 (272)
72 2o6q_A Variable lymphocyte rec 99.9 9.6E-23 3.3E-27 157.4 17.8 186 3-189 27-218 (270)
73 3rfs_A Internalin B, repeat mo 99.9 3.1E-23 1.1E-27 160.4 14.2 218 8-236 14-235 (272)
74 1jl5_A Outer protein YOPM; leu 99.9 2.6E-23 8.7E-28 171.7 12.5 182 39-239 92-273 (454)
75 1wwl_A Monocyte differentiatio 99.9 3.2E-23 1.1E-27 163.3 12.4 198 11-214 93-311 (312)
76 1jl5_A Outer protein YOPM; leu 99.9 7E-22 2.4E-26 163.1 19.2 182 12-213 90-271 (454)
77 4glp_A Monocyte differentiatio 99.9 1.9E-22 6.5E-27 158.8 14.3 222 12-238 63-309 (310)
78 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.6E-28 170.9 6.5 228 11-239 30-319 (386)
79 3cvr_A Invasion plasmid antige 99.9 4.6E-22 1.6E-26 167.5 16.1 188 13-222 59-253 (571)
80 3m19_A Variable lymphocyte rec 99.9 1.2E-21 4.1E-26 149.7 16.7 176 38-214 14-194 (251)
81 1h6t_A Internalin B; cell adhe 99.9 5.3E-23 1.8E-27 160.5 8.9 197 8-214 19-215 (291)
82 3g06_A SSPH2 (leucine-rich rep 99.9 3.3E-21 1.1E-25 164.1 20.3 205 13-240 40-278 (622)
83 2z62_A TOLL-like receptor 4, v 99.9 1.2E-21 4.1E-26 151.8 15.3 181 9-190 48-238 (276)
84 3cvr_A Invasion plasmid antige 99.9 2.9E-21 9.8E-26 162.7 17.6 179 39-238 60-245 (571)
85 1h6t_A Internalin B; cell adhe 99.9 4.6E-22 1.6E-26 155.2 11.4 194 38-240 24-217 (291)
86 4ay9_X Follicle-stimulating ho 99.9 5.5E-21 1.9E-25 152.9 16.9 226 3-232 20-255 (350)
87 1m9s_A Internalin B; cell inva 99.9 6E-22 2E-26 168.4 10.9 200 7-216 15-214 (605)
88 3m19_A Variable lymphocyte rec 99.9 1.5E-20 5E-25 143.7 17.5 174 13-190 14-193 (251)
89 2ast_B S-phase kinase-associat 99.9 1E-21 3.6E-26 156.2 9.2 225 13-242 70-312 (336)
90 1m9s_A Internalin B; cell inva 99.9 2.3E-21 8E-26 164.7 11.5 195 37-240 20-214 (605)
91 2ast_B S-phase kinase-associat 99.9 1.1E-21 3.7E-26 156.1 8.9 220 13-237 47-285 (336)
92 3goz_A Leucine-rich repeat-con 99.8 1.4E-21 4.9E-26 157.0 7.3 227 11-238 20-299 (362)
93 1z7x_W Ribonuclease inhibitor; 99.8 2.8E-22 9.7E-27 166.0 2.1 179 61-239 200-414 (461)
94 3goz_A Leucine-rich repeat-con 99.8 9.1E-22 3.1E-26 158.2 3.7 221 18-239 3-269 (362)
95 1xeu_A Internalin C; cellular 99.8 6.5E-21 2.2E-25 146.5 8.1 172 36-215 17-188 (263)
96 2ca6_A RAN GTPase-activating p 99.8 4.4E-21 1.5E-25 155.4 6.7 204 34-237 28-288 (386)
97 4ay9_X Follicle-stimulating ho 99.8 1.6E-19 5.4E-24 144.4 14.9 218 16-240 12-241 (350)
98 1xeu_A Internalin C; cellular 99.8 1.4E-20 4.8E-25 144.6 8.3 176 7-192 13-188 (263)
99 2o6s_A Variable lymphocyte rec 99.8 8.8E-20 3E-24 135.4 12.2 177 41-224 10-190 (208)
100 1z7x_W Ribonuclease inhibitor; 99.8 5.4E-22 1.8E-26 164.3 -0.2 223 14-237 86-384 (461)
101 4ezg_A Putative uncharacterize 99.8 2.1E-19 7.3E-24 132.2 11.3 150 60-237 44-195 (197)
102 3e6j_A Variable lymphocyte rec 99.8 8.9E-19 3E-23 131.9 14.7 151 61-214 20-174 (229)
103 2xot_A Amphoterin-induced prot 99.8 4.3E-19 1.5E-23 142.5 12.7 172 41-213 21-203 (361)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 8.8E-19 3E-23 131.1 13.5 151 62-214 13-168 (220)
105 2v9t_B SLIT homolog 2 protein 99.8 8E-19 2.7E-23 131.3 13.2 149 63-213 14-166 (220)
106 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.8E-23 128.4 13.2 150 35-188 41-193 (197)
107 4glp_A Monocyte differentiatio 99.8 1.3E-19 4.3E-24 142.7 8.4 198 11-213 89-308 (310)
108 2o6s_A Variable lymphocyte rec 99.8 6.8E-19 2.3E-23 130.6 11.5 174 16-200 10-190 (208)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 7.1E-18 2.4E-22 126.2 13.8 149 40-189 13-166 (220)
110 2v9t_B SLIT homolog 2 protein 99.8 6.4E-18 2.2E-22 126.4 13.4 149 40-189 13-165 (220)
111 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 125.8 14.5 149 40-189 21-172 (229)
112 2xot_A Amphoterin-induced prot 99.8 6E-18 2E-22 135.8 12.1 139 6-145 32-179 (361)
113 2ell_A Acidic leucine-rich nuc 99.7 1.1E-17 3.9E-22 119.8 10.1 136 106-242 24-166 (168)
114 2ell_A Acidic leucine-rich nuc 99.7 2.5E-17 8.6E-22 118.0 11.8 134 59-193 23-164 (168)
115 3sb4_A Hypothetical leucine ri 99.7 3.3E-17 1.1E-21 129.9 12.4 79 12-92 48-157 (329)
116 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.9E-24 153.5 -2.4 178 60-240 349-550 (567)
117 1dce_A Protein (RAB geranylger 99.7 1E-19 3.5E-24 153.8 -3.9 193 35-230 346-567 (567)
118 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.1E-22 132.5 7.1 226 10-244 22-318 (329)
119 4fdw_A Leucine rich hypothetic 99.7 2.3E-15 7.7E-20 122.2 18.8 219 14-243 136-365 (401)
120 1w8a_A SLIT protein; signaling 99.7 2.7E-16 9.4E-21 115.0 11.4 128 86-215 11-142 (192)
121 4fdw_A Leucine rich hypothetic 99.7 3.7E-15 1.3E-19 120.9 18.1 210 15-232 159-379 (401)
122 4b8c_D Glucose-repressible alc 99.7 2.8E-17 9.6E-22 142.8 6.1 114 75-189 216-329 (727)
123 2wfh_A SLIT homolog 2 protein 99.7 5.3E-16 1.8E-20 113.5 11.9 126 86-213 13-140 (193)
124 4b8c_D Glucose-repressible alc 99.7 9.2E-17 3.1E-21 139.6 8.8 216 12-236 172-404 (727)
125 3ogk_B Coronatine-insensitive 99.7 2.9E-17 9.9E-22 140.0 5.6 205 35-240 290-530 (592)
126 3ogk_B Coronatine-insensitive 99.7 1.4E-17 4.8E-22 141.9 3.5 201 36-237 162-421 (592)
127 2je0_A Acidic leucine-rich nuc 99.7 2.3E-16 7.9E-21 110.7 8.7 123 60-183 17-147 (149)
128 2je0_A Acidic leucine-rich nuc 99.7 1.6E-16 5.3E-21 111.5 7.5 123 108-231 19-148 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.7 1.8E-16 6.3E-21 114.3 7.7 133 80-236 16-153 (176)
130 1w8a_A SLIT protein; signaling 99.7 1.6E-15 5.4E-20 110.9 12.7 126 62-189 10-139 (192)
131 2wfh_A SLIT homolog 2 protein 99.6 4.6E-15 1.6E-19 108.5 12.9 125 63-189 13-139 (193)
132 1a9n_A U2A', U2A'; complex (nu 99.6 3.2E-16 1.1E-20 113.1 6.5 129 60-189 19-153 (176)
133 2o6r_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 105.2 12.6 131 84-216 8-141 (177)
134 1ds9_A Outer arm dynein; leuci 99.6 3.6E-17 1.2E-21 120.3 -1.9 127 61-189 24-153 (198)
135 1ds9_A Outer arm dynein; leuci 99.6 8.8E-17 3E-21 118.3 -0.3 138 95-237 37-186 (198)
136 2o6r_A Variable lymphocyte rec 99.6 4.2E-14 1.4E-18 102.0 12.8 127 62-190 9-138 (177)
137 2p1m_B Transport inhibitor res 99.6 1E-16 3.4E-21 136.7 -2.2 34 198-231 371-405 (594)
138 2p1m_B Transport inhibitor res 99.5 5.9E-16 2E-20 131.9 1.3 102 11-112 128-241 (594)
139 3g39_A Variable lymphocyte rec 99.5 1.6E-13 5.4E-18 98.3 10.4 105 108-214 11-117 (170)
140 2r9u_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 98.3 10.6 104 109-214 15-120 (174)
141 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.3E-17 92.7 10.5 105 84-190 10-116 (170)
142 2r9u_A Variable lymphocyte rec 99.4 2.6E-12 8.9E-17 92.2 10.8 106 85-192 14-121 (174)
143 3un9_A NLR family member X1; l 99.4 9.2E-14 3.1E-18 111.7 1.2 177 60-236 72-283 (372)
144 3un9_A NLR family member X1; l 99.3 6.1E-13 2.1E-17 106.9 5.3 159 82-240 71-256 (372)
145 4fs7_A Uncharacterized protein 99.3 1.1E-10 3.7E-15 94.6 15.8 213 10-232 159-375 (394)
146 2ifg_A High affinity nerve gro 99.3 2.3E-11 8E-16 96.8 10.6 103 110-213 12-117 (347)
147 4gt6_A Cell surface protein; l 99.3 1.1E-09 3.9E-14 88.7 19.6 85 147-234 283-368 (394)
148 4gt6_A Cell surface protein; l 99.2 1.3E-09 4.4E-14 88.3 19.7 128 102-235 261-390 (394)
149 4fs7_A Uncharacterized protein 99.2 4.7E-10 1.6E-14 90.9 17.0 226 9-243 67-362 (394)
150 4h09_A Hypothetical leucine ri 99.2 2.6E-09 8.8E-14 86.0 20.6 94 147-243 258-352 (379)
151 4h09_A Hypothetical leucine ri 99.2 4.1E-09 1.4E-13 84.9 19.7 112 127-242 215-328 (379)
152 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 92.1 9.4 103 86-190 11-117 (347)
153 2ra8_A Uncharacterized protein 99.0 1.4E-09 4.6E-14 86.9 8.7 156 75-234 164-341 (362)
154 2ra8_A Uncharacterized protein 99.0 2.4E-09 8.1E-14 85.5 9.0 177 60-239 107-323 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 4.8E-09 1.6E-13 75.9 3.3 113 126-238 33-166 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 1.5E-08 5.1E-13 73.2 4.6 88 102-189 61-164 (185)
157 3e4g_A ATP synthase subunit S, 98.4 1.1E-07 3.8E-12 67.4 3.0 86 152-237 61-154 (176)
158 3rw6_A Nuclear RNA export fact 98.3 2.6E-07 8.8E-12 70.3 2.9 80 149-229 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.2 6.7E-07 2.3E-11 63.4 2.2 78 39-116 62-149 (176)
160 3rw6_A Nuclear RNA export fact 97.8 2.4E-05 8.1E-10 59.5 5.3 63 173-237 167-234 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 5.6E-05 1.9E-09 54.6 5.0 37 125-161 94-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.6 9.5E-05 3.2E-09 53.4 5.4 62 104-165 39-111 (197)
163 3rfe_A Platelet glycoprotein I 97.4 0.00034 1.1E-08 47.1 6.0 55 155-212 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.2 0.00052 1.8E-08 46.1 5.0 54 42-96 12-68 (130)
165 2lz0_A Uncharacterized protein 91.3 0.37 1.3E-05 30.3 4.7 46 24-70 6-53 (100)
166 2lz0_A Uncharacterized protein 90.0 0.48 1.7E-05 29.8 4.4 37 9-47 16-52 (100)
No 1
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.4e-29 Score=196.80 Aligned_cols=232 Identities=24% Similarity=0.347 Sum_probs=139.2
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcC
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRG 81 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 81 (245)
+..+|..-.++++.|++++ +.++.+++..|..+++|+.|++++|.++++.+..+. ++|++|++++|.++.+|..+.
T Consensus 43 l~~lp~~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~- 120 (330)
T 1xku_A 43 LEKVPKDLPPDTALLDLQN-NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP- 120 (330)
T ss_dssp CCSCCCSCCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-
T ss_pred ccccCccCCCCCeEEECCC-CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-
Confidence 3445544556677777777 777777666677777777777777777766555554 677777777777666664432
Q ss_pred CCCCcEEEeeccccCCccc-cccCCCCccEEEecccccc---cCChhhhcccccceeecccCcCCCchhhhcCCCCCcEE
Q psy4258 82 LTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLE---ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~---~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L 157 (245)
++|++|++++|.+..++. .+..+++|+.+++++|.+. ..+..+..+++|+.|++.+|.+..+|..+. +++++|
T Consensus 121 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L 197 (330)
T 1xku_A 121 -KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTEL 197 (330)
T ss_dssp -TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEE
T ss_pred -ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEE
Confidence 566666666666665543 3556666666666666554 233445566666666666666665554332 455666
Q ss_pred ecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 158 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
++++|.++...+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++. +|..+..+++|+.|++++|+++
T Consensus 198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCC
Confidence 666665555555555555566666666665554432 44555556666666665554 3445555555666666666665
Q ss_pred ccccC
Q psy4258 237 KFGTR 241 (245)
Q Consensus 237 ~~~~~ 241 (245)
.++..
T Consensus 277 ~~~~~ 281 (330)
T 1xku_A 277 AIGSN 281 (330)
T ss_dssp CCCTT
T ss_pred ccChh
Confidence 55543
No 2
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.3e-29 Score=199.34 Aligned_cols=235 Identities=18% Similarity=0.267 Sum_probs=206.6
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeecccccccccc---CC-CCCCcccEEEecCCccccchhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIH---EN-AFPPTIRKLHVGFNNLTSLNNS 78 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~---~~-~~~~~L~~L~l~~~~~~~~~~~ 78 (245)
.+..+|..-.+++++|++++ +.++.++...|..+++|+.|++++|.++.+. .. .-.++|++|++++|.+..++..
T Consensus 18 ~l~~ip~~~~~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 18 GLTSVPTGIPSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CCSSCCSCCCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred CcccCCCCCCCCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 35677777788999999999 9999998888999999999999999887653 11 1138999999999999999988
Q ss_pred hcCCCCCcEEEeeccccCCccc--cccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCC--chhhhcCCCC
Q psy4258 79 LRGLTDLNWLFLNNNRLKSLEG--QLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITS--LDGLLRGLTK 153 (245)
Q Consensus 79 ~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~ 153 (245)
+..+++|++|++++|.+..++. .+..+++|+.|++++|.+... +..+..+++|+.|++.+|.+.+ +|..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 9999999999999999987764 788899999999999988854 5567889999999999999886 6778888999
Q ss_pred CcEEecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccccchhhhcCCC-cccEEEcc
Q psy4258 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-RLRTVDLS 231 (245)
Q Consensus 154 l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~l~l~ 231 (245)
|++|++++|.++..++..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+++..+..+..++ +|+.|+++
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 9999999999999888889999999999999999998754 677899999999999999998888888884 89999999
Q ss_pred CCCCccc
Q psy4258 232 YNKINKF 238 (245)
Q Consensus 232 ~n~l~~~ 238 (245)
+|+++..
T Consensus 257 ~N~~~~~ 263 (306)
T 2z66_A 257 QNDFACT 263 (306)
T ss_dssp TCCEECS
T ss_pred CCCeecc
Confidence 9998753
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.9e-29 Score=204.26 Aligned_cols=233 Identities=24% Similarity=0.321 Sum_probs=208.9
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSL 79 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~ 79 (245)
.+..+|..-.++++.|++++ +.+..+.+..|..+++|+.|++++|.++.++..+|. ++|++|++++|.++.++ ..|
T Consensus 54 ~l~~iP~~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 54 NLREVPDGISTNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CCSSCCSCCCTTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CcCcCCCCCCCCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 45667777788999999999 999999999999999999999999999999877776 89999999999999887 468
Q ss_pred cCCCCCcEEEeeccccCCccc-cccCCCCccEEEeccc-ccccCCh-hhhcccccceeecccCcCCCchhhhcCCCCCcE
Q psy4258 80 RGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQN-QLEALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQV 156 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~-~l~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~ 156 (245)
..+++|++|++++|.+..++. .+..+++|+.|+++++ .+..++. .+..+++|+.|++++|.+..+|. +..+++|++
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 211 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDE 211 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCE
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCE
Confidence 999999999999999998765 6788999999999985 5555654 57889999999999999999985 778899999
Q ss_pred EecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCC
Q psy4258 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235 (245)
Q Consensus 157 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l 235 (245)
|++++|.++...+..+..+++|+.|++++|.+..+ +..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999998888999999999999999999976 45678899999999999999998888889999999999999987
Q ss_pred cc
Q psy4258 236 NK 237 (245)
Q Consensus 236 ~~ 237 (245)
..
T Consensus 292 ~C 293 (440)
T 3zyj_A 292 NC 293 (440)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-28 Score=204.12 Aligned_cols=233 Identities=24% Similarity=0.304 Sum_probs=208.4
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSL 79 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~ 79 (245)
.+..+|..-.++++.|++++ +.+..+.+..|..+++|+.|++++|.++++++..|. ++|++|++++|.++.++ ..+
T Consensus 65 ~l~~iP~~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 143 (452)
T 3zyi_A 65 GLSEVPQGIPSNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF 143 (452)
T ss_dssp CCSSCCSCCCTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS
T ss_pred CcCccCCCCCCCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh
Confidence 35667777778999999999 999999999999999999999999999999887776 89999999999999887 558
Q ss_pred cCCCCCcEEEeeccccCCccc-cccCCCCccEEEeccc-ccccCCh-hhhcccccceeecccCcCCCchhhhcCCCCCcE
Q psy4258 80 RGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQN-QLEALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQV 156 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~-~l~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~ 156 (245)
..+++|++|++++|.+..++. .+..+++|+.|+++++ .+..++. .+..+++|+.|++++|.+.++|. +..+++|++
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 222 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEE 222 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCE
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccE
Confidence 889999999999999998765 6788999999999984 5666655 47889999999999999999875 778899999
Q ss_pred EecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCC
Q psy4258 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235 (245)
Q Consensus 157 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l 235 (245)
|++++|.++...+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 99999999998888999999999999999999976 56788899999999999999998888889999999999999987
Q ss_pred cc
Q psy4258 236 NK 237 (245)
Q Consensus 236 ~~ 237 (245)
..
T Consensus 303 ~C 304 (452)
T 3zyi_A 303 NC 304 (452)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 5
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=9.2e-29 Score=196.72 Aligned_cols=230 Identities=28% Similarity=0.410 Sum_probs=137.6
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcC
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRG 81 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 81 (245)
+..+|..-.++++.|++++ +.+..+++..|..+++|+.|++++|.++++.+..+. ++|++|++++|.+..+|..+.
T Consensus 45 l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~- 122 (332)
T 2ft3_A 45 LKAVPKEISPDTTLLDLQN-NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP- 122 (332)
T ss_dssp CSSCCSCCCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-
T ss_pred ccccCCCCCCCCeEEECCC-CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-
Confidence 3445555566788888888 777777777777788888888888877777555554 678888888887777765443
Q ss_pred CCCCcEEEeeccccCCccc-cccCCCCccEEEeccccccc---CChhhhcccccceeecccCcCCCchhhhcCCCCCcEE
Q psy4258 82 LTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEA---LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L 157 (245)
++|++|++++|.+..++. .+..+++|+.|++++|.+.. .+..+..+ +|+.|++++|.+..+|..+. +++++|
T Consensus 123 -~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L 198 (332)
T 2ft3_A 123 -SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNEL 198 (332)
T ss_dssp -TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCC
T ss_pred -ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEE
Confidence 677777777777776654 36667777777777776642 23333333 55555555555555443322 345555
Q ss_pred ecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 158 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
++++|.++..++..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.++. +|..+..+++|+.|++++|.++
T Consensus 199 ~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp BCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCC
T ss_pred ECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCC
Confidence 555555544444444455555555555555554432 34444555555555555543 3334444555555555555555
Q ss_pred cccc
Q psy4258 237 KFGT 240 (245)
Q Consensus 237 ~~~~ 240 (245)
.++.
T Consensus 278 ~~~~ 281 (332)
T 2ft3_A 278 KVGV 281 (332)
T ss_dssp BCCT
T ss_pred ccCh
Confidence 4443
No 6
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=3.6e-28 Score=193.13 Aligned_cols=227 Identities=22% Similarity=0.333 Sum_probs=201.8
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcE
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNW 87 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 87 (245)
+.++++|++|++++ +.+..+.+..|..+++|+.|++++|.+++++...+ ++|++|++++|.+..++ ..+..+++|++
T Consensus 72 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 72 FKNLKNLHTLILIN-NKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp TTTCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCE
T ss_pred hccCCCCCEEECCC-CcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccE
Confidence 45889999999999 99999988899999999999999999998876655 89999999999999776 56899999999
Q ss_pred EEeeccccCC---ccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCc
Q psy4258 88 LFLNNNRLKS---LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 88 L~l~~~~l~~---~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~ 163 (245)
|++++|.+.. .+..+..+++|+.+++++|.+..+|..+. ++|+.|++.+|.+.++ +..+..+++|++|++++|.
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 9999999863 35678889999999999999998876653 7999999999999886 5678889999999999999
Q ss_pred cccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcC------CCcccEEEccCCCCcc
Q psy4258 164 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG------LKRLRTVDLSYNKINK 237 (245)
Q Consensus 164 l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~------~~~L~~l~l~~n~l~~ 237 (245)
++..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+++..+..+.. ...++.+++.+|++..
T Consensus 228 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9988877888999999999999999999999999999999999999999987776653 3678999999999976
Q ss_pred cc
Q psy4258 238 FG 239 (245)
Q Consensus 238 ~~ 239 (245)
+.
T Consensus 308 ~~ 309 (330)
T 1xku_A 308 WE 309 (330)
T ss_dssp GG
T ss_pred cc
Confidence 43
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.9e-28 Score=194.45 Aligned_cols=228 Identities=17% Similarity=0.137 Sum_probs=200.3
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCC-CCcccEEEecCCccccchhhhcCCCCCcEEE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAF-PPTIRKLHVGFNNLTSLNNSLRGLTDLNWLF 89 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 89 (245)
..+.++.|++++ +.+..++. .+..+++|+.|++++|.++.++.... .++|++|++++|.+..+|..+..+++|++|+
T Consensus 79 ~~~~l~~L~L~~-n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRS-VPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEES-SCCSSCCS-CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccC-CCchhcCh-hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 457899999999 99997754 46679999999999999987764322 2899999999999999999999999999999
Q ss_pred eecccc-CCcccccc---------CCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEec
Q psy4258 90 LNNNRL-KSLEGQLG---------TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159 (245)
Q Consensus 90 l~~~~l-~~~~~~~~---------~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l 159 (245)
+++|.+ ..+|..+. .+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..+..+++|++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEEC
Confidence 999764 46666554 48999999999999999999999999999999999999999988999999999999
Q ss_pred CCCccccccCccCCCCCCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 160 DFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
++|.+....+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.+++++.+++..+.+..+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 999888777888999999999999998766 6788899999999999999999999999999999999999998887766
Q ss_pred cc
Q psy4258 239 GT 240 (245)
Q Consensus 239 ~~ 240 (245)
+.
T Consensus 317 ~~ 318 (328)
T 4fcg_A 317 DQ 318 (328)
T ss_dssp --
T ss_pred hh
Confidence 53
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=6.8e-28 Score=199.44 Aligned_cols=95 Identities=23% Similarity=0.333 Sum_probs=64.1
Q ss_pred hcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCccc
Q psy4258 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226 (245)
Q Consensus 148 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 226 (245)
+..+++|++|++++|.++..++..+..+++|+.|++++|.+.++ +..+..+++|+.|++++|.+++..+.++..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 44556666666666666666555666666777777777766655 34556677777777777777776666777777777
Q ss_pred EEEccCCCCcccccCC
Q psy4258 227 TVDLSYNKINKFGTRN 242 (245)
Q Consensus 227 ~l~l~~n~l~~~~~~~ 242 (245)
.|++++|.++.++...
T Consensus 375 ~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 375 ELALDTNQLKSVPDGI 390 (455)
T ss_dssp EEECCSSCCSCCCTTT
T ss_pred EEECCCCccccCCHhH
Confidence 7777777777766543
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=7.4e-29 Score=195.65 Aligned_cols=223 Identities=21% Similarity=0.252 Sum_probs=195.8
Q ss_pred ccccEEeeCCCCCcee--cCCCCCCCCcccceeeccc-cccccccCCCCC--CcccEEEecCCccc-cchhhhcCCCCCc
Q psy4258 13 VALNLIDLEPETGSHP--LTSDDLKGTPALITLLLVN-NNITHIHENAFP--PTIRKLHVGFNNLT-SLNNSLRGLTDLN 86 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~--~~~~~~~~~~~L~~l~l~~-~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~~~~~~~~~L~ 86 (245)
.++++|++++ +.+.. ..+..+..+++|+.|++++ +.+.+..+..+. ++|++|++++|.+. .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCC-CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 6799999999 89886 5567888999999999995 777655444444 89999999999998 7788899999999
Q ss_pred EEEeeccccC-CccccccCCCCccEEEecccccc-cCChhhhccc-ccceeecccCcCC-CchhhhcCCCCCcEEecCCC
Q psy4258 87 WLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFS-QLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFN 162 (245)
Q Consensus 87 ~L~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~-~L~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~~ 162 (245)
+|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|+.|++++|.+. .+|..+..+. ++.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 9999999988 67888999999999999999998 7888898888 8999999999988 4677777776 999999999
Q ss_pred ccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcc
Q psy4258 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 163 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
.++...+..+..+++|+.|++++|.+...+..+..+++|+.|++++|.+++..|.++..+++|+.|++++|+++.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 998877888999999999999999999666667888999999999999998889999999999999999999973
No 10
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=199.68 Aligned_cols=235 Identities=21% Similarity=0.300 Sum_probs=195.6
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhh-h
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNS-L 79 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~-~ 79 (245)
.+..+|..-.++|++|++++ +.++.++...+..+++|+.|++++|.++++++..+. ++|++|++++|.++.++.. +
T Consensus 42 ~l~~iP~~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 42 SLNSIPSGLTEAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp TCSSCCTTCCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred CcccccccccccCcEEECCC-CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 45677777778999999999 999999888899999999999999999998877665 8999999999999988754 8
Q ss_pred cCCCCCcEEEeeccccCCccc--cccCCCCccEEEeccc-ccccC-ChhhhcccccceeecccCcCCCc-hhhhcCCCCC
Q psy4258 80 RGLTDLNWLFLNNNRLKSLEG--QLGTLSKLQLLVIEQN-QLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKL 154 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~l~l~~~-~l~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l 154 (245)
..+++|++|++++|.+..++. .+..+++|+.|++++| .+..+ +..+..+++|+.|++.+|.+..+ |..+..++++
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 899999999999999998876 6888999999999998 46655 45678889999999999988875 6677888889
Q ss_pred cEEecCCCccccccCccCCCCCCCCEEEccCCccccc--------------------------------cccccCCCCcc
Q psy4258 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--------------------------------NSSLSGLTKLA 202 (245)
Q Consensus 155 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~--------------------------------~~~~~~~~~L~ 202 (245)
++|++++|.+...+...+..+++|+.|++++|.+..+ |..+..+++|+
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 9999998888766655555577888888888877653 34456788899
Q ss_pred EEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 203 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 203 ~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
.|++++|.++......+..+++|+.+++++|++...
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 999999999876555568889999999999988754
No 11
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.9e-28 Score=193.08 Aligned_cols=224 Identities=22% Similarity=0.329 Sum_probs=198.7
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcE
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNW 87 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 87 (245)
+.++++|++|++++ +.+..+.+..|..+++|+.|++++|.++.++...+ ++|++|++++|.+..++ ..+..+++|++
T Consensus 74 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 74 FKGLQHLYALVLVN-NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNC 151 (332)
T ss_dssp TTTCTTCCEEECCS-SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred hhCCCCCcEEECCC-CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence 45889999999999 99999988899999999999999999998887665 89999999999999887 55899999999
Q ss_pred EEeeccccCC---ccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCch-hhhcCCCCCcEEecCCCc
Q psy4258 88 LFLNNNRLKS---LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 88 L~l~~~~l~~---~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~~~ 163 (245)
|++++|.+.. .+..+..+ +|+.+++++|.+..+|..+. ++|+.|++++|.+.+++ ..+..+++++.|++++|.
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred EECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 9999999863 34556666 89999999999998877654 68999999999999875 568889999999999999
Q ss_pred cccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCC------CcccEEEccCCCCcc
Q psy4258 164 ITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL------KRLRTVDLSYNKINK 237 (245)
Q Consensus 164 l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~------~~L~~l~l~~n~l~~ 237 (245)
++..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+++..+..+... ..++.+++.+|++..
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 99888878999999999999999999999999999999999999999999877776543 568999999999983
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=198.48 Aligned_cols=239 Identities=23% Similarity=0.309 Sum_probs=176.0
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSL 79 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~ 79 (245)
.+..+|..-.++++.|++++ +.++.+.+..|..+++|+.|++++|.++++.+.+|. ++|++|++++|.+..++ ..|
T Consensus 22 ~l~~ip~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 22 RFVAVPEGIPTETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp CCSSCCSCCCTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CcCcCCCCCCCCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 35566666677888888888 888888888888888888888888888887766665 78888888888888776 456
Q ss_pred cCCCCCcEEEeeccccCCc-cccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCchh-hhcCCCCCcE
Q psy4258 80 RGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQV 156 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~ 156 (245)
..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++.+|.+..++. .+..+++|+.
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence 7888888888888887755 44677778888888888877754 4457777888888888887777653 4667777777
Q ss_pred EecCCCccccccCccCCCCCCCCEEE------------------------ccCCcccccc-ccccCCCCccEEEcCCCcc
Q psy4258 157 FNMDFNQITMVRRDEFQNLHNLDSIS------------------------LQNNQITSMN-SSLSGLTKLAYLYLSHNQL 211 (245)
Q Consensus 157 L~l~~~~l~~~~~~~~~~~~~L~~L~------------------------l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l 211 (245)
|++++|.+...++..+..+++|+.|+ +++|.++.+| ..+..+++|+.|++++|.+
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC
Confidence 77777777666555555555555555 4455555554 2456677788888888887
Q ss_pred cccchhhhcCCCcccEEEccCCCCcccccCC
Q psy4258 212 TEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 212 ~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
++..+..+..+++|+.|++++|.++.+++..
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 291 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred CccChhhccccccCCEEECCCCccceECHHH
Confidence 7776677777788888888888887775443
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=3.2e-27 Score=191.83 Aligned_cols=228 Identities=21% Similarity=0.286 Sum_probs=165.7
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhh-hcCCCCCc
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNS-LRGLTDLN 86 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 86 (245)
..+++|++|++++ +.+..+++..|..+++|+.|++++|.++++++..+. ++|++|++++|.+..+|.. +..+++|+
T Consensus 66 ~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 66 DSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCC-CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 3567788888888 778877777777888888888888887777666554 7788888888888777644 47778888
Q ss_pred EEEeeccccCCcc-ccccCCCCccEEEecccccccCChh-hhc-------------------------------------
Q psy4258 87 WLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQL------------------------------------- 127 (245)
Q Consensus 87 ~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~-~~~------------------------------------- 127 (245)
+|++++|.+..++ ..+..+++|+.|++++|.+..++.. +..
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 8888888777654 3466777788888877766543211 100
Q ss_pred ccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcC
Q psy4258 128 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207 (245)
Q Consensus 128 ~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~ 207 (245)
.++|+.|++.+|.+.+.+ .+..++++++|++++|.++...+..+..+++|+.|++++|.++.++..+..+++|+.|+++
T Consensus 225 ~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp CSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECC
T ss_pred cccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECC
Confidence 123445555555555443 3566788888888888888777777888888888888888888887777778888888888
Q ss_pred CCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 208 ~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
+|.+.+. +..+..+++|+.|++++|.++.++.
T Consensus 304 ~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~~ 335 (390)
T 3o6n_A 304 HNHLLHV-ERNQPQFDRLENLYLDHNSIVTLKL 335 (390)
T ss_dssp SSCCCCC-GGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred CCcceec-CccccccCcCCEEECCCCccceeCc
Confidence 8888864 5566777888888888888877753
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=1.1e-26 Score=198.68 Aligned_cols=232 Identities=19% Similarity=0.234 Sum_probs=145.3
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccc-hhhhc
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLR 80 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~-~~~~~ 80 (245)
+..+|..-.+++++|++++ +.++.+.+..|.++++|+.|++++|.+..+.+.+|. ++|++|++++|.+..+ |..+.
T Consensus 24 l~~iP~~l~~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 24 LNEIPGTLPNSTECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CSSCCTTSCTTCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred cccCcCCCCCcCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 3445555555667777777 666666666666667777777777666666555554 5666666666666544 45566
Q ss_pred CCCCCcEEEeeccccCCc-cccccCCCCccEEEecccccccCC-hhhhcccccceeecccCcCCCc-hhhhcCCCC----
Q psy4258 81 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSL-DGLLRGLTK---- 153 (245)
Q Consensus 81 ~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~---- 153 (245)
.+++|++|++++|.+..+ +..+..+++|++|++++|.+..++ +.+..+++|+.|++.+|.+..+ +..+..+++
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l 182 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee
Confidence 666666666666666654 344555566666666666555431 2222355555555555554443 222333333
Q ss_pred -------------------------------------------------------------------------CcEEecC
Q psy4258 154 -------------------------------------------------------------------------LQVFNMD 160 (245)
Q Consensus 154 -------------------------------------------------------------------------l~~L~l~ 160 (245)
++.++++
T Consensus 183 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~ 262 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECT
T ss_pred EEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEee
Confidence 3444444
Q ss_pred CCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 161 FNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 161 ~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
+|.++..++..++.+++|+.|++++|.++.+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 263 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 263 KHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp TCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred cCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 4444445455567778888888888888888887888888888888888888766666777777777777777655
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1e-26 Score=181.08 Aligned_cols=216 Identities=25% Similarity=0.370 Sum_probs=120.3
Q ss_pred EEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccc-hhhhcCCCCCcEEEeecc
Q psy4258 17 LIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNN 93 (245)
Q Consensus 17 ~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 93 (245)
+++.++ +.++.++... .++++.|+++++.+++++...+. ++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 15 ~~~c~~-~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQ-QGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCS-SCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCc-CCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 445555 5555443321 23455556665555555544443 4556666665555544 345555566666666665
Q ss_pred c-cCCc-cccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCccccccC
Q psy4258 94 R-LKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRR 169 (245)
Q Consensus 94 ~-l~~~-~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~ 169 (245)
. +..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|++|++++|.++..++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 4 5544 34455556666666666655544 3335555566666666666555443 24455666666666666655555
Q ss_pred ccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 170 DEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+++..+..+..+++|+.+++++|++.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 5555566666666666666544 445555666666666666666655555566666666666666554
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.2e-27 Score=209.44 Aligned_cols=226 Identities=24% Similarity=0.324 Sum_probs=163.6
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccc-cchhhhcCCCCCcE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT-SLNNSLRGLTDLNW 87 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~~~~~~~~~L~~ 87 (245)
++++|++|++++ +.+....+..+..+++|+.|++++|.+.+..+..+. ++|++|++++|.+. .+|..+..+++|++
T Consensus 416 ~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 416 NCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCCCCEEECcC-CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 455666666666 666655555566666666666666665544333332 67777777777776 55667777777777
Q ss_pred EEeeccccC-CccccccCCCCccEEEecccccc-cCChhhhcccccceeecccCcCC-Cchhh-----------------
Q psy4258 88 LFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRIT-SLDGL----------------- 147 (245)
Q Consensus 88 L~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~----------------- 147 (245)
|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 777777776 56677777777888888777776 56777777788888888777654 23322
Q ss_pred -----------------------------------------------------hcCCCCCcEEecCCCccccccCccCCC
Q psy4258 148 -----------------------------------------------------LRGLTKLQVFNMDFNQITMVRRDEFQN 174 (245)
Q Consensus 148 -----------------------------------------------------~~~~~~l~~L~l~~~~l~~~~~~~~~~ 174 (245)
+..+++++.|++++|.++...+..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 222356778888888887777777888
Q ss_pred CCCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcc
Q psy4258 175 LHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 175 ~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
++.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|+++.
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 888888888888888 678888888888888888888888888888888888888888888764
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=8.7e-27 Score=193.96 Aligned_cols=228 Identities=23% Similarity=0.317 Sum_probs=160.9
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L 85 (245)
+.++++|++|++++ +.+..++...|..+++|+.|++++|.+..+.+..+. ++|++|++++|.+..++ ..|..+++|
T Consensus 76 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 154 (477)
T 2id5_A 76 FNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154 (477)
T ss_dssp TTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred hhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence 34677888888888 788887777777888888888888887777665554 67888888877777553 566777777
Q ss_pred cEEEeeccccCCccc-cccCCCCccEEEecccccccCCh-hhhccc------------------------ccceeecccC
Q psy4258 86 NWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPS-DIQLFS------------------------QLGSLYANNN 139 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~------------------------~L~~l~l~~~ 139 (245)
++|++++|.+..++. .+..+++|+.|++++|.+..++. .+..++ +|+.|++.+|
T Consensus 155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 777777777766553 35566666666666665553322 233333 5555666666
Q ss_pred cCCCch-hhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchh
Q psy4258 140 RITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLD 217 (245)
Q Consensus 140 ~~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~ 217 (245)
.+..+| ..+..+++|+.|++++|.++..++..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+++..+.
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred cccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 666665 3566677777788877777777666777777788888887777765 45667777788888888877776666
Q ss_pred hhcCCCcccEEEccCCCCcc
Q psy4258 218 DIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 218 ~l~~~~~L~~l~l~~n~l~~ 237 (245)
.+..+++|+.|++++|++..
T Consensus 315 ~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp GBSCGGGCCEEECCSSCEEC
T ss_pred HcCCCcccCEEEccCCCccC
Confidence 77777778888888777653
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.1e-26 Score=192.15 Aligned_cols=116 Identities=28% Similarity=0.347 Sum_probs=102.2
Q ss_pred hhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCc
Q psy4258 124 DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201 (245)
Q Consensus 124 ~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L 201 (245)
.+..+++|+.|++++|.+.++ +..+..+++|++|++++|.++..++..++.+++|+.|++++|.+..+ |..+..+++|
T Consensus 294 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 373 (455)
T 3v47_A 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL 373 (455)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence 355667788888888888776 45788899999999999999988888899999999999999999976 6788899999
Q ss_pred cEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccc
Q psy4258 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 202 ~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
+.|++++|++++..+..+..+++|+.|++++|+++..-
T Consensus 374 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 374 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence 99999999999987778899999999999999997654
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.3e-26 Score=182.32 Aligned_cols=223 Identities=22% Similarity=0.292 Sum_probs=194.9
Q ss_pred cEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccc---hhhhcCCCCCcEEEe
Q psy4258 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL---NNSLRGLTDLNWLFL 90 (245)
Q Consensus 16 ~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l 90 (245)
+.++.++ +.++.++.... ++++.|++++|.+++++...+. ++|++|++++|.+..+ +..+..+++|++|++
T Consensus 10 ~~l~c~~-~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNS-KGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCS-SCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCC-CCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 5688888 88888875432 5799999999999999887665 8999999999998855 566778999999999
Q ss_pred eccccCCccccccCCCCccEEEecccccccCCh--hhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCcccc-
Q psy4258 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS--DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM- 166 (245)
Q Consensus 91 ~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~- 166 (245)
++|.+..++..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+... +..+..++++++|++++|.+..
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 999999999889999999999999999987764 688899999999999998864 4567889999999999999876
Q ss_pred ccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCC
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
..+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++...+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 5567889999999999999999977 567888999999999999999987778899999999999999998876543
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=4.3e-27 Score=183.23 Aligned_cols=211 Identities=27% Similarity=0.392 Sum_probs=188.8
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCc-cccc-hhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNN-LTSL-NNS 78 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~-~~~~-~~~ 78 (245)
.+..+|....+++++|++++ +.++.+++..|..+++|+.|++++|.++++.+..+. ++|++|++++|. +..+ +..
T Consensus 22 ~l~~ip~~~~~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 22 GLQAVPVGIPAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CCSSCCTTCCTTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred CcccCCcCCCCCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 45677877888999999999 999999988999999999999999999998777665 899999999997 8877 578
Q ss_pred hcCCCCCcEEEeeccccCCc-cccccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCc
Q psy4258 79 LRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQ 155 (245)
Q Consensus 79 ~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~ 155 (245)
+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+..++. .+..+++|+
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 180 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence 89999999999999999877 45678899999999999999977654 7889999999999999998875 578899999
Q ss_pred EEecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCccccc
Q psy4258 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 156 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~ 214 (245)
+|++++|.++...+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++...
T Consensus 181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred EEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 99999999998888899999999999999999998864 578899999999999998763
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1e-27 Score=189.16 Aligned_cols=227 Identities=19% Similarity=0.250 Sum_probs=198.5
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccc-cchhhhcCCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT-SLNNSLRGLTDL 85 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~~~~~~~~~L 85 (245)
+.++++|++|++++++.+....+..+..+++|+.|++++|.+++..+..+. ++|++|++++|.+. .+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 347899999999933788877788899999999999999999855554444 89999999999998 788889999999
Q ss_pred cEEEeeccccC-CccccccCCC-CccEEEecccccc-cCChhhhcccccceeecccCcCCC-chhhhcCCCCCcEEecCC
Q psy4258 86 NWLFLNNNRLK-SLEGQLGTLS-KLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDF 161 (245)
Q Consensus 86 ~~L~l~~~~l~-~~~~~~~~~~-~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~ 161 (245)
++|++++|.+. .+|..+..++ .|+.|++++|.+. .+|..+..+. |+.|++++|.+.. .|..+..+++++.|++++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 99999999998 7888899987 9999999999988 6788888886 9999999999885 567788899999999999
Q ss_pred CccccccCccCCCCCCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCC-Cccc
Q psy4258 162 NQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK-INKF 238 (245)
Q Consensus 162 ~~l~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~-l~~~ 238 (245)
|.++...+. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++.+|+ +...
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 999866543 778899999999999999 77888999999999999999999887765 788999999999998 4443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-26 Score=196.27 Aligned_cols=225 Identities=21% Similarity=0.304 Sum_probs=171.3
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhh-hcCCCCCcE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNS-LRGLTDLNW 87 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~-~~~~~~L~~ 87 (245)
++++|+.|++++ +.+..+++..|..+++|+.|++++|.++++++..+. ++|++|++++|.+..+|.. |..+++|++
T Consensus 73 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 73 SFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HCCCCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCC-CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 567888888888 888888877888888888888888888888776654 7888888888888877744 578888888
Q ss_pred EEeeccccCCccc-cccCCCCccEEEecccccccCChhhhccc-------------------------------------
Q psy4258 88 LFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPSDIQLFS------------------------------------- 129 (245)
Q Consensus 88 L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~~~~~~~------------------------------------- 129 (245)
|++++|.+..+++ .+..+++|+.|++++|.+..++. ..++
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~ 229 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence 8888888876644 57778888888888887765432 1122
Q ss_pred ---ccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEc
Q psy4258 130 ---QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 206 (245)
Q Consensus 130 ---~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l 206 (245)
+|+.|++.+|.+.+. ..+..+++|+.|++++|.+....+..++.+++|+.|++++|.+..+|..+..+++|+.|++
T Consensus 230 ~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 230 VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence 244444444444443 3466678888888888888887777888888888888888888888777777888888888
Q ss_pred CCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 207 ~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
++|.+.+ +|..+..+++|+.|++++|.++.++.
T Consensus 309 s~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 309 SHNHLLH-VERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp CSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred CCCCCCc-cCcccccCCCCCEEECCCCCCCCcCh
Confidence 8888886 45667777888888888888877653
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.6e-26 Score=181.23 Aligned_cols=223 Identities=28% Similarity=0.389 Sum_probs=157.6
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEE
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 88 (245)
...+++|++|++++ +.+..++ .+..+++|+.|++++|.+++++.....++|++|++++|........+..+++|++|
T Consensus 84 ~~~l~~L~~L~L~~-n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L 160 (347)
T 4fmz_A 84 LSNLVKLTNLYIGT-NKITDIS--ALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL 160 (347)
T ss_dssp GTTCTTCCEEECCS-SCCCCCG--GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred hhcCCcCCEEEccC-CcccCch--HHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence 55778888888888 7777653 47778888888888887777665333366677777666433222334555555555
Q ss_pred EeeccccCCccccccCCCCccEEEec----------------------ccccccCChhhhcccccceeecccCcCCCchh
Q psy4258 89 FLNNNRLKSLEGQLGTLSKLQLLVIE----------------------QNQLEALPSDIQLFSQLGSLYANNNRITSLDG 146 (245)
Q Consensus 89 ~l~~~~l~~~~~~~~~~~~L~~l~l~----------------------~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 146 (245)
++++|.+..++. +..+++|+.++++ +|.+..++. +..+++|+.|++++|.+.+++.
T Consensus 161 ~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 161 TVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred EecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc
Confidence 555555544433 4444444444444 444443332 5566777788888887777766
Q ss_pred hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCccc
Q psy4258 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226 (245)
Q Consensus 147 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 226 (245)
+..++++++|++++|.++.. ..+..+++|+.|++++|.+.++ ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 67778888888888877765 3577788899999998888887 4577888999999999999988888899999999
Q ss_pred EEEccCCCCccccc
Q psy4258 227 TVDLSYNKINKFGT 240 (245)
Q Consensus 227 ~l~l~~n~l~~~~~ 240 (245)
.|++++|+++.+++
T Consensus 315 ~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 315 TLFLSQNHITDIRP 328 (347)
T ss_dssp EEECCSSSCCCCGG
T ss_pred EEEccCCccccccC
Confidence 99999999988765
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-26 Score=184.03 Aligned_cols=200 Identities=21% Similarity=0.279 Sum_probs=179.0
Q ss_pred CcccceeeccccccccccCCCCC-CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecc
Q psy4258 37 TPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ 115 (245)
Q Consensus 37 ~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~ 115 (245)
..+++.|+++++.++.++..... ++|++|++++|.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 36789999999999988765443 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccc-cCChhhhc---------ccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccC
Q psy4258 116 NQLE-ALPSDIQL---------FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185 (245)
Q Consensus 116 ~~l~-~~~~~~~~---------~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 185 (245)
|... .+|..+.. +++|+.|++++|.+..+|..+..+++|++|++++|.++.+++ .++.+++|+.|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcC
Confidence 7544 67766554 899999999999999999889999999999999999987654 688899999999999
Q ss_pred Cccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcc
Q psy4258 186 NQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 186 ~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
|.+. .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++..
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 8776 678888999999999999999999899999999999999999987644
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.94 E-value=2e-26 Score=201.81 Aligned_cols=226 Identities=21% Similarity=0.290 Sum_probs=178.7
Q ss_pred cccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccc-cchhhhcCCCCCcEE
Q psy4258 12 AVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT-SLNNSLRGLTDLNWL 88 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L 88 (245)
+++|++|++.+ +.+....+..+..+++|+.|++++|.+++..+..+. ++|++|++++|.+. .+|..+..+++|++|
T Consensus 393 ~~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCS-SEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCccEEECCC-CccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEE
Confidence 56677777777 777766666777778888888888877655444443 77888888888777 667778888888888
Q ss_pred EeeccccC-CccccccCCCCccEEEecccccc-cCChhhhcccccceeecccCcCC-CchhhhcCCCCCcEEecCCCccc
Q psy4258 89 FLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFNQIT 165 (245)
Q Consensus 89 ~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~~~l~ 165 (245)
++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++.+|.+. .+|..+..+++|+.|++++|.++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 88888877 56777888888888888888887 67777888888888888888887 46777888888888888888765
Q ss_pred cccC----------------------------------------------------------------------ccCCCC
Q psy4258 166 MVRR----------------------------------------------------------------------DEFQNL 175 (245)
Q Consensus 166 ~~~~----------------------------------------------------------------------~~~~~~ 175 (245)
...+ ..++.+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 2211 123345
Q ss_pred CCCCEEEccCCccc-cccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 176 HNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 176 ~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
+.|+.|++++|.++ .+|..+..++.|+.|++++|.+++.+|..++.+++|+.|++++|+++..
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEC
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCc
Confidence 67888999999888 6788888999999999999999998999999999999999999999844
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.4e-25 Score=179.27 Aligned_cols=216 Identities=25% Similarity=0.395 Sum_probs=111.7
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEe
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 90 (245)
.+++|++|++++ +.+..+++ +..+++|+.|++++|.+++++.-...++|++|++++|.+..++. +..+++|++|++
T Consensus 64 ~~~~L~~L~l~~-n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 64 YLTNLEYLNLNG-NQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNL 139 (347)
T ss_dssp GCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred hcCCccEEEccC-Cccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEEC
Confidence 455566666666 55555443 55556666666666655555432222566666666666655544 555666666666
Q ss_pred eccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCc
Q psy4258 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 170 (245)
Q Consensus 91 ~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~ 170 (245)
++|........+..+++|+.+++++|.+..++. +..+++|+.|++.+|.+.+++. +..+++++.+++++|.+....+
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-
Confidence 666433333346666677777777666655443 5566677777777776666543 3344444444444444433322
Q ss_pred cCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcc
Q psy4258 171 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 171 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.+++. ..+..+++|+.|++++|.++.
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred -hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 3334444444444444444333 33444444444444444432 233334444444444444433
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1e-25 Score=197.76 Aligned_cols=229 Identities=19% Similarity=0.242 Sum_probs=158.9
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC-Cc-ccEEEecCCccccchhhhcCCCC--C
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP-PT-IRKLHVGFNNLTSLNNSLRGLTD--L 85 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-~~-L~~L~l~~~~~~~~~~~~~~~~~--L 85 (245)
.++++|+.|++++ +.+..++ .+..+++|+.|++++|.++.++..... ++ |+.|++++|.+..+|..+..... |
T Consensus 570 ~~L~~L~~L~Ls~-N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVH-NKVRHLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTT-SCCCBCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCC-CCcccch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence 3556666666666 6666443 556666666666666666654433111 44 66666666666666655544432 6
Q ss_pred cEEEeeccccCCccc----ccc--CCCCccEEEecccccccCChhhh-cccccceeecccCcCCCchhhhcCCC------
Q psy4258 86 NWLFLNNNRLKSLEG----QLG--TLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSLDGLLRGLT------ 152 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~----~~~--~~~~L~~l~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~------ 152 (245)
++|++++|.+....+ .+. ..++|+.|++++|.+..+|..+. .+++|+.|++++|.+..+|.......
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence 666666666543221 111 23477888888887777777654 67888888888888888776544332
Q ss_pred --CCcEEecCCCccccccCccCC--CCCCCCEEEccCCccccccccccCCCCccEEEcCC------CcccccchhhhcCC
Q psy4258 153 --KLQVFNMDFNQITMVRRDEFQ--NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH------NQLTEFLLDDIRGL 222 (245)
Q Consensus 153 --~l~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~l~~~ 222 (245)
+|+.|++++|.++.++ ..+. .+++|+.|++++|.+..+|..+..+++|+.|++++ |.+.+.+|..+..+
T Consensus 727 l~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp GGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred cCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 7888999888888654 3444 78889999999998888888888888999998866 67777788888888
Q ss_pred CcccEEEccCCCCcccccCC
Q psy4258 223 KRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 223 ~~L~~l~l~~n~l~~~~~~~ 242 (245)
++|+.|++++|.++.+|...
T Consensus 806 ~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 806 PSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp SSCCEEECCSSCCCBCCSCC
T ss_pred CCCCEEECCCCCCCccCHhh
Confidence 99999999999888887653
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.3e-26 Score=196.52 Aligned_cols=229 Identities=18% Similarity=0.187 Sum_probs=159.1
Q ss_pred CccccccEEeeCCCCCce-ecCCCCCCCCcccceeeccccccccccCCCCC-Cc-ccEEEecCCccccchhhhcCCC--C
Q psy4258 10 GHAVALNLIDLEPETGSH-PLTSDDLKGTPALITLLLVNNNITHIHENAFP-PT-IRKLHVGFNNLTSLNNSLRGLT--D 84 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~-~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-~~-L~~L~l~~~~~~~~~~~~~~~~--~ 84 (245)
.++++|++|++++ +.+. .++ .+..+++|+.|++++|.++.++..... ++ |++|++++|.++.+|..+.... +
T Consensus 327 ~~l~~L~~L~L~~-N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLY-NQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCS-CCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcC-CcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCc
Confidence 3566666666666 6666 443 556666666666666666655433111 45 7777777777666665554433 6
Q ss_pred CcEEEeeccccCC-cccccc-------CCCCccEEEecccccccCChhhh-cccccceeecccCcCCCchhhhcCC----
Q psy4258 85 LNWLFLNNNRLKS-LEGQLG-------TLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSLDGLLRGL---- 151 (245)
Q Consensus 85 L~~L~l~~~~l~~-~~~~~~-------~~~~L~~l~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~---- 151 (245)
|++|++++|.+.. +|..+. .+++|+.|++++|.+..+|..+. .+++|+.|++++|.+..+|......
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~ 483 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEE
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccc
Confidence 7777777776653 334444 55678888888887777776543 4778888888888887776533222
Q ss_pred ----CCCcEEecCCCccccccCccCC--CCCCCCEEEccCCccccccccccCCCCccEEEc------CCCcccccchhhh
Q psy4258 152 ----TKLQVFNMDFNQITMVRRDEFQ--NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL------SHNQLTEFLLDDI 219 (245)
Q Consensus 152 ----~~l~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l------~~n~l~~~~~~~l 219 (245)
++|+.|++++|.++.++. .+. .+++|+.|++++|.++.+|..+..+++|+.|++ ++|.+.+.+|..+
T Consensus 484 ~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLTKLSD-DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp CTTGGGCCEEECCSSCCCBCCG-GGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred ccccCCccEEECcCCcCCccCh-hhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 278888888888876543 443 788888888888888888888888888888888 4566777778888
Q ss_pred cCCCcccEEEccCCCCcccccCC
Q psy4258 220 RGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 220 ~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
..+++|+.|++++|.++.+|...
T Consensus 563 ~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp GGCSSCCEEECCSSCCCBCCSCC
T ss_pred hcCCCCCEEECCCCcCCccCHhH
Confidence 88888888888888888877643
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=5.9e-26 Score=176.01 Aligned_cols=209 Identities=25% Similarity=0.358 Sum_probs=143.0
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhc
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLR 80 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~ 80 (245)
+..+|..-.+++++|++++ +.++.+++..|.++++|+.|++++|.+++++...+. ++|++|++++|.+..++ ..+.
T Consensus 19 l~~ip~~l~~~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (276)
T 2z62_A 19 FYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (276)
T ss_dssp CSSCCSSSCTTCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccccCCCCCCCccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc
Confidence 3445555556788888888 778777776777778888888888877777765554 67788888877777655 5677
Q ss_pred CCCCCcEEEeeccccCCccc-cccCCCCccEEEeccccccc--CChhhhcccccceeecccCcCCCch-hhhcCCCCCc-
Q psy4258 81 GLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQ- 155 (245)
Q Consensus 81 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~--~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~- 155 (245)
.+++|++|++++|.+..++. .+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+++ ..+..+..++
T Consensus 98 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 77778888887777776554 46667777777777777764 5666777777777777777776653 2333333333
Q ss_pred ---EEecCCCccccccCccCCCCCCCCEEEccCCcccccccc-ccCCCCccEEEcCCCccccc
Q psy4258 156 ---VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 156 ---~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~n~l~~~ 214 (245)
++++++|.++..++..+.. .+|+.|++++|.++.++.. +..+++|+.|++++|++...
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 6777777776665544433 3677777777777766543 45677777777777777653
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=1.5e-25 Score=191.71 Aligned_cols=228 Identities=26% Similarity=0.327 Sum_probs=120.1
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccc-cch-hhhcCCCCC
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT-SLN-NSLRGLTDL 85 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~-~~~~~~~~L 85 (245)
.++++|++|++++ +.++.++ ..+..+++|+.|++++|.++++.+..+. ++|++|++++|.+. .++ ..+..+++|
T Consensus 275 ~~l~~L~~L~l~~-n~l~~lp-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 275 HCFSGLQELDLTA-THLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTCTTCSEEECTT-SCCSCCC-SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred ccccCCCEEeccC-CccCCCC-hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 3455666666666 5555443 2355556666666666655554333222 45555555555443 333 334555566
Q ss_pred cEEEeeccccCCc---cccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCch--hhhcCCCCCcEEec
Q psy4258 86 NWLFLNNNRLKSL---EGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQVFNM 159 (245)
Q Consensus 86 ~~L~l~~~~l~~~---~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~l~~L~l 159 (245)
++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++.+|.+.... ..+..++++++|++
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 6666665555543 33455556666666666555432 334555555666666555554321 22445555566666
Q ss_pred CCCccccccCccCCCCCCCCEEEccCCcccc--c--cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCC
Q psy4258 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITS--M--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235 (245)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~--~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l 235 (245)
++|.++...+..++.+++|+.|++++|.+.+ + +..+..+++|+.|++++|.+++..+.++..+++|+.|++++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 5555555544555555555555555555543 1 12344455555555555555555555555555555555555555
Q ss_pred cccc
Q psy4258 236 NKFG 239 (245)
Q Consensus 236 ~~~~ 239 (245)
+..+
T Consensus 513 ~~~~ 516 (606)
T 3t6q_A 513 TSSS 516 (606)
T ss_dssp CGGG
T ss_pred CcCC
Confidence 5443
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-25 Score=181.02 Aligned_cols=224 Identities=19% Similarity=0.288 Sum_probs=185.8
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L 85 (245)
+..+++|++|++++ +.+..+++..+..+++|+.|++++|.+++++...+. ++|++|++++|.+..++ ..+..+++|
T Consensus 89 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 89 FAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred ccCCCCcCEEECCC-CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 35788999999999 899999888889999999999999999988877654 89999999999988765 568888999
Q ss_pred cEEEeeccccCCcccc-ccC-------------------------------------CCCccEEEecccccccCChhhhc
Q psy4258 86 NWLFLNNNRLKSLEGQ-LGT-------------------------------------LSKLQLLVIEQNQLEALPSDIQL 127 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~~-~~~-------------------------------------~~~L~~l~l~~~~l~~~~~~~~~ 127 (245)
++|++++|.++.++.. +.. .++|+.|++++|.+... +.+..
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~ 246 (390)
T 3o6n_A 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLN 246 (390)
T ss_dssp CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGG
T ss_pred CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcC
Confidence 9999999887754311 111 13455666666655544 46788
Q ss_pred ccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEc
Q psy4258 128 FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 206 (245)
Q Consensus 128 ~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l 206 (245)
+++|+.|++++|.+.++ |..+..+++|++|++++|.++..+. .+..+++|+.|++++|.+..+|..+..+++|+.|++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 325 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEEC
Confidence 99999999999999876 6778889999999999999988753 557789999999999999999888888999999999
Q ss_pred CCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 207 ~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
++|.+++.. +..+++|+.|++++|+++..
T Consensus 326 ~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 326 DHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCccceeC---chhhccCCEEEcCCCCccch
Confidence 999998853 67789999999999998764
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.9e-25 Score=190.97 Aligned_cols=226 Identities=23% Similarity=0.249 Sum_probs=166.5
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccc-cccccCCCCCCcccEEEecCCccccc---hhhhcCCCCCc
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNN-ITHIHENAFPPTIRKLHVGFNNLTSL---NNSLRGLTDLN 86 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~-i~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~ 86 (245)
.+++|++|++.+ +.+..++ .+ .+++|+.|++++|. +..++ ....++|++|++++|.+..+ +..+..+++|+
T Consensus 305 ~~~~L~~L~l~~-n~l~~lp--~~-~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 305 KHFKWQSLSIIR-CQLKQFP--TL-DLPFLKSLTLTMNKGSISFK-KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp TTCCCSEEEEES-CCCSSCC--CC-CCSSCCEEEEESCSSCEECC-CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred ccccCCEEEccc-ccCcccc--cC-CCCccceeeccCCcCccchh-hccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence 444555555555 5554443 23 55556666666553 22221 11226788888888877755 67778888888
Q ss_pred EEEeeccccCCccccccCCCCccEEEecccccccCC--hhhhcccccceeecccCcCCC-chhhhcCCCCCcEEecCCCc
Q psy4258 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDFNQ 163 (245)
Q Consensus 87 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~ 163 (245)
+|++++|.+..++..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+.. .|..+..+++|++|++++|.
T Consensus 380 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 380 HLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp EEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred EeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 888888888877777888888888888888877554 357778888888888888776 45667778888888888888
Q ss_pred ccc-ccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccC
Q psy4258 164 ITM-VRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 241 (245)
Q Consensus 164 l~~-~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~ 241 (245)
+.. ..+..++.+++|+.|++++|.++.+ |..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++.++..
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh
Confidence 876 3566788888888888888888865 45677888888888888888887788888888888888888888877754
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3.2e-26 Score=196.54 Aligned_cols=228 Identities=20% Similarity=0.276 Sum_probs=139.0
Q ss_pred CccccccEEeeCCCCCceec-----------------CCCCCC--CCcccceeeccccccccccCCCCC--CcccEEEec
Q psy4258 10 GHAVALNLIDLEPETGSHPL-----------------TSDDLK--GTPALITLLLVNNNITHIHENAFP--PTIRKLHVG 68 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~-----------------~~~~~~--~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~ 68 (245)
.++++|++|++++ +.++.. .+..+. .+++|+.|++++|.+.+..+..+. ++|++|+++
T Consensus 203 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 203 MRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred hcccCCCEEECcC-CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3677788888888 777763 455566 777788888887775544334343 677777777
Q ss_pred CCc-cc--cchhhhcCC------CCCcEEEeeccccCCccc--cccCCCCccEEEecccccc-cCChhhhcccccceeec
Q psy4258 69 FNN-LT--SLNNSLRGL------TDLNWLFLNNNRLKSLEG--QLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYA 136 (245)
Q Consensus 69 ~~~-~~--~~~~~~~~~------~~L~~L~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~l~-~~~~~~~~~~~L~~l~l 136 (245)
+|. ++ .+|..+..+ ++|++|++++|.++.+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 776 66 366555544 777777777777777776 6777777777777777766 666 6666666666666
Q ss_pred ccCcCCCchhhhcCCCC-CcEEecCCCccccccCccCCCCC--CCCEEEccCCcccc-cccccc-------CCCCccEEE
Q psy4258 137 NNNRITSLDGLLRGLTK-LQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITS-MNSSLS-------GLTKLAYLY 205 (245)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-l~~L~l~~~~l~~~~~~~~~~~~--~L~~L~l~~~~i~~-~~~~~~-------~~~~L~~L~ 205 (245)
++|.+..+|..+..+++ |++|++++|.++.++ ..+.... +|+.|++++|.+.. +|..+. .+++|+.|+
T Consensus 361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIP-NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CSSEEEECCTTSEEECTTCCEEECCSSCCSSCC-SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCccccccHhhhhhcccCcEEEccCCcCcccc-hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 66666666655666666 666666666665433 2333322 45555555555553 233333 344555555
Q ss_pred cCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 206 l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
+++|.+++..+..+..+++|+.|++++|.++.++.
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 55555554333333445555555555555554443
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=4.1e-25 Score=191.32 Aligned_cols=231 Identities=20% Similarity=0.290 Sum_probs=144.6
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccc--cccccCCCCC----CcccEEEecCCccccc-hhhhcC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNN--ITHIHENAFP----PTIRKLHVGFNNLTSL-NNSLRG 81 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~--i~~~~~~~~~----~~L~~L~l~~~~~~~~-~~~~~~ 81 (245)
+..+++|++|++++ +.+..+.+..|.++++|+.|++++|. +..++...|. ++|+.|++++|.+..+ +..+..
T Consensus 325 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 325 FQWLKCLEHLNMED-NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTCTTCCEEECCS-CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred cccCCCCCEEECCC-CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 45788899999999 88988888888888888888888775 3333333332 4666677776666644 355666
Q ss_pred CCCCcEEEeeccccCC-cc-ccccCCCCccEEEeccccccc---------------------------CChhhhcccccc
Q psy4258 82 LTDLNWLFLNNNRLKS-LE-GQLGTLSKLQLLVIEQNQLEA---------------------------LPSDIQLFSQLG 132 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~-~~-~~~~~~~~L~~l~l~~~~l~~---------------------------~~~~~~~~~~L~ 132 (245)
+++|++|++++|.+.. ++ ..+..+++|+.+++++|.+.. +|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 6677777776666542 33 345555666666665555432 344455555666
Q ss_pred eeecccCcCCCchh-hhcCCCCCcEEecCCCccccccC--------ccCCCCCCCCEEEccCCccccccc-cccCCCCcc
Q psy4258 133 SLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRR--------DEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLA 202 (245)
Q Consensus 133 ~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~--------~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~ 202 (245)
.|++++|.+..++. .+..+++|++|++++|.++.+.. ..+..+++|+.|++++|.+..+|. .+..+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 66666666655542 34555666666666666554322 124555666666666666666654 355666666
Q ss_pred EEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 203 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 203 ~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.|++++|.+++..+..+..+++|+.|++++|.++.++.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 66666666666555556666667777777766666543
No 35
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.6e-25 Score=181.78 Aligned_cols=223 Identities=22% Similarity=0.339 Sum_probs=194.5
Q ss_pred ccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCCcEEEee
Q psy4258 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLN 91 (245)
Q Consensus 15 L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~ 91 (245)
.+.++..+ ..++.++.... ++++.|++++|.++.++...|. ++|++|++++|.+..++ ..|..+++|++|+++
T Consensus 45 ~~~v~c~~-~~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVR-KNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCS-CCCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCC-CCcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 56778777 88888865433 5789999999999999877776 89999999999999776 788999999999999
Q ss_pred ccccCCccc-cccCCCCccEEEecccccccCCh-hhhcccccceeecccC-cCCCchh-hhcCCCCCcEEecCCCccccc
Q psy4258 92 NNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNN-RITSLDG-LLRGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 92 ~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~-~~~~~~~-~~~~~~~l~~L~l~~~~l~~~ 167 (245)
+|.++.++. .+..+++|+.|++++|.+..++. .+..+++|+.|++.+| .+..++. .+..+++|++|++++|.++.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 999998876 58889999999999999987765 5788999999999984 4555554 678899999999999999877
Q ss_pred cCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCCC
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~ 243 (245)
+ .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+++..+.++..+++|+.|++++|+++.++...+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 5 478889999999999999977 6788899999999999999999989999999999999999999999887654
No 36
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.94 E-value=2e-26 Score=181.24 Aligned_cols=193 Identities=25% Similarity=0.355 Sum_probs=88.2
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEe
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 90 (245)
.+++|++|++.+ +.+..++ .+..+++|+.|++++|.+++++.-.-.++|++|++++|.+..++ .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~-~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFG-TGVTTIE--GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTT-SCCCCCT--TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeC-CCccCch--hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 344455555555 4444432 23444445555555554444443111144555555555444443 3444445555555
Q ss_pred eccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCc
Q psy4258 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 170 (245)
Q Consensus 91 ~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~ 170 (245)
++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++..++
T Consensus 115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 115 TSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 5554444432 4444445555554444444332 4444444555554444444443 4444444555554444444332
Q ss_pred cCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccc
Q psy4258 171 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 171 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
+..+++|+.|++++|.+..++. +..+++|+.|++++|++++
T Consensus 191 -l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred -hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 3444444455554444444432 3444444555554444443
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.1e-25 Score=194.96 Aligned_cols=235 Identities=23% Similarity=0.310 Sum_probs=150.6
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchh-hhc
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNN-SLR 80 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~-~~~ 80 (245)
+..+|..-.+++++|++++ +.++.+++..|..+++|+.|++++|.++++.+.++. ++|++|++++|.+..+|. +|.
T Consensus 16 L~~ip~~~~~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 16 LTQVPDDLPTNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp CSSCCSCSCTTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccccccCCCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 4556655567788888888 888887777777888888888888887777665553 778888888888777764 577
Q ss_pred CCCCCcEEEeeccccCCcc-ccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCchh-hh--cCCCCCc
Q psy4258 81 GLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDG-LL--RGLTKLQ 155 (245)
Q Consensus 81 ~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~~-~~--~~~~~l~ 155 (245)
.+++|++|++++|.+..++ ..+..+++|++|++++|.+... +..+..+++|+.|++.+|.+..++. .+ ...++++
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 7888888888888777665 4577778888888887777644 3446667777777777777766543 22 2346677
Q ss_pred EEecCCCccccccCccCCCC---------------------------CCCCEEEccCCccccc-cccccCCC--CccEEE
Q psy4258 156 VFNMDFNQITMVRRDEFQNL---------------------------HNLDSISLQNNQITSM-NSSLSGLT--KLAYLY 205 (245)
Q Consensus 156 ~L~l~~~~l~~~~~~~~~~~---------------------------~~L~~L~l~~~~i~~~-~~~~~~~~--~L~~L~ 205 (245)
+|++++|.++...+..+..+ ++|+.|++++|.+..+ +.++..+. +|+.|+
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 77777776655544433322 2344444444444432 22333332 255555
Q ss_pred cCCCcccccchhhhcCCCcccEEEccCCCCcccc
Q psy4258 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 206 l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
+++|.+.+..+.++..+++|+.|++++|.++.+.
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288 (680)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEEC
T ss_pred CCCCCcCccCcccccCcccccEeeCCCCccCccC
Confidence 5555555554555555555555555555555443
No 38
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.9e-26 Score=179.38 Aligned_cols=216 Identities=19% Similarity=0.216 Sum_probs=184.3
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEe
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 90 (245)
.+++|++|++++ +.+..+.+..+..+++|+.|++++|.+++..+-...++|++|++++|.++.++. .++|++|++
T Consensus 32 ~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTT-SCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCCCEEECcC-CccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 567999999999 999998888889999999999999998877653334899999999999987763 389999999
Q ss_pred eccccCCccccccCCCCccEEEecccccccCCh-hhhcccccceeecccCcCCCch-hhh-cCCCCCcEEecCCCccccc
Q psy4258 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLL-RGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 91 ~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~~~~~~-~~~-~~~~~l~~L~l~~~~l~~~ 167 (245)
++|.+..++.. .+++|+.|++++|.+..+++ .+..+++|+.|++++|.+.+++ ..+ ..++++++|++++|.++..
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 99999877643 36889999999999987644 6778899999999999998754 334 4678999999999999887
Q ss_pred cCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
+. ...+++|+.|++++|.++.++..+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 185 KG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCB
T ss_pred cc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCcc
Confidence 54 334789999999999999998888899999999999999997 4677888999999999999998
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.4e-25 Score=191.78 Aligned_cols=228 Identities=16% Similarity=0.199 Sum_probs=199.6
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEE
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLF 89 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 89 (245)
..+++|+.+++.+ +.+..++ .+..+++|+.|++++|.++.++.. ..++|++|++++|..... ..+..+++|++|+
T Consensus 282 ~~l~~L~~L~l~~-~~~~~l~--~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 282 HCLANVSAMSLAG-VSIKYLE--DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLD 356 (606)
T ss_dssp GGGTTCSEEEEES-CCCCCCC--CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEE
T ss_pred ccCCCCCEEEecC-ccchhhh--hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccc-hhhccCCCCCEEE
Confidence 4678899999999 8887776 688889999999999999888754 448999999999954422 2567899999999
Q ss_pred eeccccCCc---cccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCch--hhhcCCCCCcEEecCCCcc
Q psy4258 90 LNNNRLKSL---EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 90 l~~~~l~~~---~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~l~~L~l~~~~l 164 (245)
+++|.+..+ +..+..+++|+.+++++|.+..+|..+..+++|+.|++.+|.+...+ ..+..+++|++|++++|.+
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 999998765 67788899999999999999888888889999999999999988764 3678899999999999999
Q ss_pred ccccCccCCCCCCCCEEEccCCcccc--ccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCC
Q psy4258 165 TMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
....+..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+++..+.++..+++|+.|++++|+++.+.+..
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 88888889999999999999999986 6788899999999999999999988999999999999999999999885543
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=7.4e-26 Score=181.44 Aligned_cols=229 Identities=19% Similarity=0.237 Sum_probs=197.2
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCCcE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNW 87 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~ 87 (245)
.|+.....+.++ +.++.++.... ++|+.|++++|.+++++...+. ++|++|++++|.++.++ ..+..+++|++
T Consensus 29 ~C~~~~~c~~~~-~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSS-GSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCS-TTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCC-CCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 566777788888 89998875433 4799999999999999886665 89999999999999775 67899999999
Q ss_pred EEeeccccCCcccc-ccCCCCccEEEecccccccCCh--hhhcccccceeecccC-cCCCc-hhhhcCCCCCcEEecCCC
Q psy4258 88 LFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPS--DIQLFSQLGSLYANNN-RITSL-DGLLRGLTKLQVFNMDFN 162 (245)
Q Consensus 88 L~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~l~~L~l~~~ 162 (245)
|++++|.++.++.. +..+++|++|++++|.+..+|. .+..+++|+.|++.+| .+..+ +..+..++++++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 99999999988776 8889999999999999998876 6888999999999998 46666 456788999999999999
Q ss_pred ccccccCccCCCCCCCCEEEccCCccccccccc-cCCCCccEEEcCCCccccc---------------------------
Q psy4258 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEF--------------------------- 214 (245)
Q Consensus 163 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~l~~n~l~~~--------------------------- 214 (245)
.++...+..+..+++|+.|++++|.+..++..+ ..+++|+.|++++|.+++.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 999888888999999999999999998877644 3578999999999988763
Q ss_pred ----chhhhcCCCcccEEEccCCCCcccccCCC
Q psy4258 215 ----LLDDIRGLKRLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 215 ----~~~~l~~~~~L~~l~l~~n~l~~~~~~~~ 243 (245)
+|.++..+++|+.|++++|.++.++...+
T Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred chhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 34567788999999999999999987654
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.2e-25 Score=183.29 Aligned_cols=222 Identities=24% Similarity=0.369 Sum_probs=189.0
Q ss_pred ccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcE
Q psy4258 8 EDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNW 87 (245)
Q Consensus 8 ~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 87 (245)
+..++++|++|++++ +.+..+. .+..+++|+.|++++|.+.++.+....++|++|++++|.+..++ .+..+++|++
T Consensus 172 ~~~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 247 (466)
T 1o6v_A 172 PLANLTTLERLDISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTD 247 (466)
T ss_dssp GGTTCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred hhccCCCCCEEECcC-CcCCCCh--hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCE
Confidence 356788899999998 8887664 36778899999999998887766444589999999999888774 5778899999
Q ss_pred EEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccc
Q psy4258 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 88 L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~ 167 (245)
|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++..
T Consensus 248 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 248 LDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred EECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence 9999999887765 7888999999999998887765 7788999999999999998876 77889999999999998877
Q ss_pred cCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccC
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 241 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~ 241 (245)
.+ +..+++|+.|++++|.+.++ ..+..+++|+.|++++|++.+..| +..+++|+.|++++|.++.+|..
T Consensus 325 ~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred hh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence 54 67889999999999999987 467889999999999999999766 88899999999999999886644
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.7e-25 Score=181.03 Aligned_cols=223 Identities=22% Similarity=0.347 Sum_probs=193.5
Q ss_pred ccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCCcEEEee
Q psy4258 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLN 91 (245)
Q Consensus 15 L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~ 91 (245)
.+.++..+ ..++.++.. +. ++++.|++++|.++.+.+..|. ++|++|++++|.+..++ ..|..+++|++|+++
T Consensus 56 ~~~v~c~~-~~l~~iP~~-~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEVPQG-IP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCS-SCCSSCCSC-CC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECC-CCcCccCCC-CC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 46777777 788877643 22 5799999999999999877776 89999999999999776 788999999999999
Q ss_pred ccccCCcccc-ccCCCCccEEEecccccccCCh-hhhcccccceeecccC-cCCCchh-hhcCCCCCcEEecCCCccccc
Q psy4258 92 NNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNN-RITSLDG-LLRGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 92 ~~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~-~~~~~~~-~~~~~~~l~~L~l~~~~l~~~ 167 (245)
+|.++.++.. +..+++|+.|++++|.+..++. .+..+++|+.|++.++ .+..++. .+..+++|+.|++++|.++..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999988754 7789999999999999987765 5788999999999984 5555654 577899999999999999877
Q ss_pred cCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCCC
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~ 243 (245)
+ .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.+..+.++..+++|+.|++++|.++.++...+
T Consensus 212 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 212 P--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp C--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred c--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 4 478889999999999999976 6678899999999999999999889999999999999999999999887654
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=187.51 Aligned_cols=111 Identities=17% Similarity=0.275 Sum_probs=62.4
Q ss_pred eeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcCC
Q psy4258 5 SYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGL 82 (245)
Q Consensus 5 ~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~ 82 (245)
..+|..-.++|++|++++ +.+..+++..|..+++|+.|++++|.++++.+..+. ++|++|++++|.++.+|.. .+
T Consensus 13 ~~ip~~~~~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 89 (520)
T 2z7x_B 13 IHVPKDLSQKTTILNISQ-NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PT 89 (520)
T ss_dssp SSCCCSCCTTCSEEECCS-SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CC
T ss_pred ccccccccccccEEECCC-CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--cc
Confidence 334443345666666666 566655555555566666666666666555444443 5666666666666555543 55
Q ss_pred CCCcEEEeeccccCC--ccccccCCCCccEEEeccccc
Q psy4258 83 TDLNWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQL 118 (245)
Q Consensus 83 ~~L~~L~l~~~~l~~--~~~~~~~~~~L~~l~l~~~~l 118 (245)
++|++|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence 666666666665553 344555555555555555544
No 44
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-25 Score=185.65 Aligned_cols=216 Identities=19% Similarity=0.202 Sum_probs=187.9
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEe
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 90 (245)
.+++|++|++++ +.+..+++..|..+++|+.|++++|.+++..+-...++|++|++++|.++.++. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCS-SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeC-CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 566999999999 999999888999999999999999999877653334899999999999988763 389999999
Q ss_pred eccccCCccccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCc-hhhhc-CCCCCcEEecCCCccccc
Q psy4258 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSL-DGLLR-GLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 91 ~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~-~~~~~-~~~~l~~L~l~~~~l~~~ 167 (245)
++|.+..++.. .+++|+.|++++|.+..+ |..+..+++|+.|++++|.+.+. |..+. .+++|++|++++|.++..
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred cCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99999887653 468999999999999866 45688899999999999999874 44554 689999999999999887
Q ss_pred cCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
++ ...+++|+.|++++|.++.+|..+..+++|+.|++++|.+++ +|..+..+++|+.+++++|++.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 54 335889999999999999998888899999999999999998 5677888999999999999998
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.2e-25 Score=188.47 Aligned_cols=223 Identities=19% Similarity=0.291 Sum_probs=185.2
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L 85 (245)
+.++++|+.|++++ +.+..+++..|..+++|+.|++++|.++.+++..|. ++|++|++++|.+..++ ..+..+++|
T Consensus 95 ~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 95 FAYAHTIQKLYMGF-NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred hcCCCCCCEEECCC-CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 45788999999999 899999888889999999999999999988887654 89999999999988765 568889999
Q ss_pred cEEEeeccccCCcccc-ccC-------------------------------------CCCccEEEecccccccCChhhhc
Q psy4258 86 NWLFLNNNRLKSLEGQ-LGT-------------------------------------LSKLQLLVIEQNQLEALPSDIQL 127 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~~-~~~-------------------------------------~~~L~~l~l~~~~l~~~~~~~~~ 127 (245)
++|++++|.+..++.. +.+ .++|+.|++++|.+... ..+..
T Consensus 174 ~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~ 252 (597)
T 3oja_B 174 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLN 252 (597)
T ss_dssp CEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGG
T ss_pred cEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhcc
Confidence 9999999987754311 110 12355555555555442 56788
Q ss_pred ccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEc
Q psy4258 128 FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 206 (245)
Q Consensus 128 ~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l 206 (245)
+++|+.|++++|.+.++ |..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..+|..+..+++|+.|++
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL 331 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEEC
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC-cccccCCCCcEEECCCCCCCccCcccccCCCCCEEEC
Confidence 99999999999999876 677889999999999999998874 4556789999999999999999988889999999999
Q ss_pred CCCcccccchhhhcCCCcccEEEccCCCCcc
Q psy4258 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 207 ~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
++|.+.+.. +..+++|+.|++++|+++.
T Consensus 332 ~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 332 DHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 999998853 6778899999999999864
No 46
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.8e-26 Score=181.99 Aligned_cols=221 Identities=19% Similarity=0.181 Sum_probs=180.0
Q ss_pred ccccEEeeCCCCCceecCCC-CCC-------CCcccceeeccccccccccCCCC----CCcccEEEecCCccccchhhhc
Q psy4258 13 VALNLIDLEPETGSHPLTSD-DLK-------GTPALITLLLVNNNITHIHENAF----PPTIRKLHVGFNNLTSLNNSLR 80 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~-~~~-------~~~~L~~l~l~~~~i~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~ 80 (245)
..++.|++++ +.+...... .+. .+++|+.|++++|.+++..+..+ .++|++|++++|.+..+|..+.
T Consensus 63 ~~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 141 (312)
T 1wwl_A 63 DIIKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLA 141 (312)
T ss_dssp HHHHHCCCCE-EEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHH
T ss_pred HHHhhccccc-ccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHH
Confidence 3477888888 777554322 222 47899999999999885433332 2899999999999997776666
Q ss_pred CC-----CCCcEEEeeccccCCcc-ccccCCCCccEEEeccccccc---CChhh--hcccccceeecccCcCCCch----
Q psy4258 81 GL-----TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA---LPSDI--QLFSQLGSLYANNNRITSLD---- 145 (245)
Q Consensus 81 ~~-----~~L~~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~---~~~~~--~~~~~L~~l~l~~~~~~~~~---- 145 (245)
.+ ++|++|++++|.+..++ ..+..+++|+.|++++|.+.. ++..+ ..+++|+.|++++|.+..++
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 55 89999999999999876 688899999999999998652 34444 78899999999999999654
Q ss_pred hhhcCCCCCcEEecCCCccccccC-ccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCc
Q psy4258 146 GLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224 (245)
Q Consensus 146 ~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 224 (245)
..+..+++|++|++++|.++...+ ..+..+++|+.|++++|.++.+|..+. ++|+.|++++|++++. |. +..+++
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 234577999999999999987653 456678999999999999999988776 8999999999999996 44 889999
Q ss_pred ccEEEccCCCCccc
Q psy4258 225 LRTVDLSYNKINKF 238 (245)
Q Consensus 225 L~~l~l~~n~l~~~ 238 (245)
|+.|++++|++++.
T Consensus 298 L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 298 VGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECTTCTTTCC
T ss_pred CCEEeccCCCCCCC
Confidence 99999999999865
No 47
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.1e-24 Score=184.87 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=71.5
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcC
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRG 81 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~ 81 (245)
+..+|..-.+++++|++++ +.+..+++..|..+++|+.|++++|.++++++.+|. ++|++|++++|.++.+|.. .
T Consensus 43 L~~ip~~~~~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~ 119 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQ-NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--P 119 (562)
T ss_dssp CCSCCTTSCTTCCEEECCS-SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--C
T ss_pred CccCCCCCCCCcCEEECCC-CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--c
Confidence 3445554556677777777 667666666666677777777777766666655554 6666777776666666644 5
Q ss_pred CCCCcEEEeeccccCCcc--ccccCCCCccEEEecccccc
Q psy4258 82 LTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLE 119 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~l~l~~~~l~ 119 (245)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 666666666666666543 45666666666666665543
No 48
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=2.3e-24 Score=182.82 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=75.1
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccch--hhhcCCCCCc
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN--NSLRGLTDLN 86 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~ 86 (245)
+.++++|++|++++ +.++.+.+..|.++++|+.|++++|.+++++.. ..++|++|++++|.+..++ ..+..+++|+
T Consensus 72 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 72 ISFLSELRVLRLSH-NRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp TTTCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred hccCCCccEEECCC-CCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 56889999999999 999999999999999999999999999998877 4589999999999988654 6788888888
Q ss_pred EEEeeccccC
Q psy4258 87 WLFLNNNRLK 96 (245)
Q Consensus 87 ~L~l~~~~l~ 96 (245)
+|++++|.+.
T Consensus 150 ~L~L~~n~l~ 159 (562)
T 3a79_B 150 FLGLSAAKFR 159 (562)
T ss_dssp EEEEECSBCC
T ss_pred EEecCCCccc
Confidence 8888887654
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=7.2e-25 Score=193.79 Aligned_cols=236 Identities=22% Similarity=0.271 Sum_probs=126.3
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccc-cccccCCCCC--CcccEEEecCCccccc-hhhh
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNN-ITHIHENAFP--PTIRKLHVGFNNLTSL-NNSL 79 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~-i~~~~~~~~~--~~L~~L~l~~~~~~~~-~~~~ 79 (245)
+..+|. .++++++|++++ +.++.+.+..|..+++|+.|++++|. +..+++.+|. ++|++|++++|.+..+ |..|
T Consensus 16 L~~vP~-lp~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 16 LTQVPQ-VLNTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp SSCCCS-SCTTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCCC-CCCCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc
Confidence 444554 556666666666 66666655556666666666666553 4444444443 5556666665555543 4555
Q ss_pred cCCCCCcEEEeeccccCC-cccc--ccCCCCccEEEecccccccC--ChhhhcccccceeecccCcCCCc-hhhh-----
Q psy4258 80 RGLTDLNWLFLNNNRLKS-LEGQ--LGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYANNNRITSL-DGLL----- 148 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~-~~~~--~~~~~~L~~l~l~~~~l~~~--~~~~~~~~~L~~l~l~~~~~~~~-~~~~----- 148 (245)
..+++|++|++++|.+.. ++.. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+... +..+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 555555555555555543 2222 44555555555555554432 12344455555555444433221 0000
Q ss_pred ---------------------cC---------------------------------------------------------
Q psy4258 149 ---------------------RG--------------------------------------------------------- 150 (245)
Q Consensus 149 ---------------------~~--------------------------------------------------------- 150 (245)
..
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 00
Q ss_pred -----------CCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhh
Q psy4258 151 -----------LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDD 218 (245)
Q Consensus 151 -----------~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~ 218 (245)
.++++.|++++|.+....+..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+.+..+..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 13445555555555544455555666666666666666644 345556666666666666666655566
Q ss_pred hcCCCcccEEEccCCCCcccccC
Q psy4258 219 IRGLKRLRTVDLSYNKINKFGTR 241 (245)
Q Consensus 219 l~~~~~L~~l~l~~n~l~~~~~~ 241 (245)
+..+++|+.|++++|.++.++..
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSS
T ss_pred hcCCCCCCEEECCCCCCCccChh
Confidence 66666666666666666665543
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=7.8e-25 Score=170.74 Aligned_cols=200 Identities=24% Similarity=0.282 Sum_probs=165.2
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcCCCCCc
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~ 86 (245)
..++++++++++.+ +.++.++.... ++++.|++++|.++.+++..+. ++|++|++++|.++.++.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~-~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTT-SCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCC-CCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 34678889999998 88888765433 5788899999988888766555 7899999999988877654 6788899
Q ss_pred EEEeeccccCCccccccCCCCccEEEecccccccCC-hhhhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCcc
Q psy4258 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 87 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l 164 (245)
+|++++|.+..+|..+..+++|++|++++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999998888888888889999999999888776 457788899999999998888764 456788899999999988
Q ss_pred ccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccc
Q psy4258 165 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
+.+++..+..+++|+.|++++|.++.+|..+....+|+.+++++|++..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 8887777888888999999999999888888888889999999888764
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=3e-24 Score=184.14 Aligned_cols=134 Identities=25% Similarity=0.325 Sum_probs=93.0
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhc
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLR 80 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~ 80 (245)
+.++|..-.+++++|+|++ |.++.+++.+|.++++|+.|++++|.|+.+++.+|. ++|++|++++|+++.+| ..|.
T Consensus 43 l~~vP~~lp~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CSSCCSSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred cCccCCCCCcCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4566655556788888888 888888777788888888888888888888777765 67888888888877766 4567
Q ss_pred CCCCCcEEEeeccccCCccc-cccCCCCccEEEeccccccc--CChhhhcccccceeeccc
Q psy4258 81 GLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYANN 138 (245)
Q Consensus 81 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~--~~~~~~~~~~L~~l~l~~ 138 (245)
++++|++|++++|.++.++. .+..+++|++|++++|.+.. .|..+..+++|++|++.+
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC
Confidence 77777777777777776654 35666666666666665542 344444444444444443
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=1.2e-24 Score=179.80 Aligned_cols=215 Identities=26% Similarity=0.347 Sum_probs=152.0
Q ss_pred eeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCC
Q psy4258 6 YFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDL 85 (245)
Q Consensus 6 ~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 85 (245)
.+...++++|++|++++ +.++.++ .+..+++|+.|++++|.+++++.. -.++|++|++++|.++.++ +..+++|
T Consensus 35 ~~~~~~l~~L~~L~Ls~-n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~-~l~~L~~L~Ls~N~l~~~~--~~~l~~L 108 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHN-SSITDMT--GIEKLTGLTKLICTSNNITTLDLS-QNTNLTYLACDSNKLTNLD--VTPLTKL 108 (457)
T ss_dssp EEEHHHHTTCCEEECCS-SCCCCCT--TGGGCTTCSEEECCSSCCSCCCCT-TCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred ccChhHcCCCCEEEccC-CCcccCh--hhcccCCCCEEEccCCcCCeEccc-cCCCCCEEECcCCCCceee--cCCCCcC
Confidence 34455788889999988 8888764 477788888889888888887522 2278888888888888774 7788888
Q ss_pred cEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccC-cCCCchhhhcCCCCCcEEecCCCcc
Q psy4258 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN-RITSLDGLLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~l~~L~l~~~~l 164 (245)
++|++++|.++.++ +..+++|+.|++++|.+..++ +..+++|+.|++..| .+..+ .+..++++++|++++|.+
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 88888888888764 777888888888888877653 556677777777777 33334 245566777777777766
Q ss_pred ccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 165 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
+.++ ++.+++|+.|++++|.++.++ +..+++|+.|++++|++++. | +..+++|+.|++++|.++.++.
T Consensus 183 ~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 183 TELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp CCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCC
T ss_pred ceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCH
Confidence 6643 555666777777766666652 55666666666666666663 3 5566666666666666665543
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.6e-25 Score=189.36 Aligned_cols=163 Identities=21% Similarity=0.296 Sum_probs=126.8
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSL 79 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~ 79 (245)
.+..+|..-.++|++|++++ +.++.+.+..|..+++|+.|++++|.++++++.++. ++|++|++++|.+..++ ..+
T Consensus 16 ~l~~ip~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 16 SFTSIPSGLTAAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CCSSCCSCCCTTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccccCCCCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 45667777778999999999 899988888899999999999999999888877665 78999999999988776 458
Q ss_pred cCCCCCcEEEeeccccCC--ccccccCCCCccEEEecccc-cccCC-hhhhcccccceeecccCcCCC-chhhh------
Q psy4258 80 RGLTDLNWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQ-LEALP-SDIQLFSQLGSLYANNNRITS-LDGLL------ 148 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~l~l~~~~-l~~~~-~~~~~~~~L~~l~l~~~~~~~-~~~~~------ 148 (245)
..+++|++|++++|.+.. .+..+..+++|++|++++|. +..++ ..+..+++|+.|++.+|.+.. .|..+
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 889999999999998874 35678888888888888886 45554 356777777777777776654 22222
Q ss_pred ------------------cCCCCCcEEecCCCcccc
Q psy4258 149 ------------------RGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 149 ------------------~~~~~l~~L~l~~~~l~~ 166 (245)
..++++++|++++|.++.
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence 246677777777776654
No 54
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=3.1e-24 Score=178.08 Aligned_cols=82 Identities=28% Similarity=0.350 Sum_probs=45.6
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEe
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 90 (245)
.+++|++|++++ +.+..+++ +..+++|+.|++++|.+.++++-.-.++|++|++++|.+..++. +..+++|++|++
T Consensus 66 ~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 66 YLNNLTQINFSN-NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp GCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred hhcCCCEEECCC-CccCCchh--hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 456666666666 66665543 55566666666666665555442222556666666555555443 455555555555
Q ss_pred eccccC
Q psy4258 91 NNNRLK 96 (245)
Q Consensus 91 ~~~~l~ 96 (245)
++|.+.
T Consensus 142 ~~n~l~ 147 (466)
T 1o6v_A 142 SSNTIS 147 (466)
T ss_dssp EEEEEC
T ss_pred CCCccC
Confidence 555444
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.93 E-value=6.4e-25 Score=166.66 Aligned_cols=190 Identities=23% Similarity=0.369 Sum_probs=118.3
Q ss_pred ccceeeccccccccccCCCCC--CcccEEEecCCc-cccch-hhhcCCCCCcEEEeec-cccCCcc-ccccCCCCccEEE
Q psy4258 39 ALITLLLVNNNITHIHENAFP--PTIRKLHVGFNN-LTSLN-NSLRGLTDLNWLFLNN-NRLKSLE-GQLGTLSKLQLLV 112 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~-~~l~~~~-~~~~~~~~L~~l~ 112 (245)
+++.|++++|.+++++...|. ++|++|++++|. ++.++ ..|..+++|++|++++ |.++.++ ..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 566666666666666555443 566666666664 55554 3556666666666666 6666554 3455666666666
Q ss_pred ecccccccCChhhhcccccc---eeecccC-cCCCchh-hhcCCCCCc-EEecCCCccccccCccCCCCCCCCEEEccCC
Q psy4258 113 IEQNQLEALPSDIQLFSQLG---SLYANNN-RITSLDG-LLRGLTKLQ-VFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186 (245)
Q Consensus 113 l~~~~l~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~-~~~~~~~l~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 186 (245)
+++|.+..+|. +..+++|+ .|++++| .+..++. .+..+++++ ++++++|.++.++...+.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 66666666554 55555565 6677666 6666553 355666777 7777777776665555544 56777777777
Q ss_pred c-ccccc-ccccCC-CCccEEEcCCCcccccchhhhcCCCcccEEEccCC
Q psy4258 187 Q-ITSMN-SSLSGL-TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233 (245)
Q Consensus 187 ~-i~~~~-~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n 233 (245)
. ++.++ ..+..+ ++|+.|++++|.+++..+. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 4 66664 345566 6777777777777764332 4556666766654
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.7e-25 Score=195.09 Aligned_cols=177 Identities=16% Similarity=0.247 Sum_probs=104.1
Q ss_pred CccccccEEeeCCCCCcee-----------------cCCCCCC--CCcccceeeccccccccccCCCCC--CcccEEEec
Q psy4258 10 GHAVALNLIDLEPETGSHP-----------------LTSDDLK--GTPALITLLLVNNNITHIHENAFP--PTIRKLHVG 68 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~-----------------~~~~~~~--~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~ 68 (245)
.++++|+.|++++ +.++. ..|..+. .+++|+.|++++|.+.+..+..+. ++|++|+++
T Consensus 445 ~~L~~L~~L~Ls~-N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 445 QRLTKLQIIYFAN-SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred hcCCCCCEEECcC-CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3667777777777 77766 1344444 677777777777764433333332 567777777
Q ss_pred CCc-ccc--chhhhcC-------CCCCcEEEeeccccCCccc--cccCCCCccEEEecccccccCChhhhcccccceeec
Q psy4258 69 FNN-LTS--LNNSLRG-------LTDLNWLFLNNNRLKSLEG--QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA 136 (245)
Q Consensus 69 ~~~-~~~--~~~~~~~-------~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l 136 (245)
+|. ++. +|..+.. +++|++|++++|.+..+|. .+..+++|+.|++++|.+..+| .+..+++|+.|++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 665 553 5543333 3366666666666666666 6666666666666666666555 5566666666666
Q ss_pred ccCcCCCchhhhcCCCC-CcEEecCCCccccccCccCCCCC--CCCEEEccCCccc
Q psy4258 137 NNNRITSLDGLLRGLTK-LQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQIT 189 (245)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-l~~L~l~~~~l~~~~~~~~~~~~--~L~~L~l~~~~i~ 189 (245)
++|.+..+|..+..+++ |+.|++++|.++.++ ..+...+ +|+.|++++|.+.
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTT
T ss_pred cCCccccchHHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCC
Confidence 66666666655555565 666666666655432 2333322 2445555554443
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2e-24 Score=168.45 Aligned_cols=201 Identities=29% Similarity=0.331 Sum_probs=164.6
Q ss_pred CCCCcccceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcEEEeeccccCCccccccCCCCccEEE
Q psy4258 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLV 112 (245)
Q Consensus 34 ~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~ 112 (245)
+..+++++.++++++.++.++... +++++.|++++|.+..++ ..+..+++|++|++++|.++.++.. ..+++|+.|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 456678888899888888877543 478889999998888664 6788888999999999888877654 6778899999
Q ss_pred ecccccccCChhhhcccccceeecccCcCCCch-hhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc
Q psy4258 113 IEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 191 (245)
Q Consensus 113 l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~ 191 (245)
+++|.+..+|..+..+++|+.|++++|++..++ ..+..+++|++|++++|.++..++..+..+++|+.|++++|.++.+
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 999888888887888888999999999888876 4677888899999999988888777788888899999999988888
Q ss_pred ccc-ccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcc
Q psy4258 192 NSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 192 ~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~ 237 (245)
|.. +..+++|+.|++++|+++. +|..+.....|+.+++.+|++..
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCCBCC
T ss_pred CHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCCccC
Confidence 754 4678889999999998886 45666677788889998888754
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=7.9e-25 Score=185.80 Aligned_cols=225 Identities=20% Similarity=0.221 Sum_probs=157.2
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCC---------------------CCCcccEEEecC
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENA---------------------FPPTIRKLHVGF 69 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~---------------------~~~~L~~L~l~~ 69 (245)
.+++|++|++.+ +.+..++. .+..+ +|+.|++++|.+..++... ..++|++|++++
T Consensus 280 ~l~~L~~L~l~~-~~l~~l~~-~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~ 356 (570)
T 2z63_A 280 CLTNVSSFSLVS-VTIERVKD-FSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356 (570)
T ss_dssp GGTTCSEEEEES-CEECSCCB-CCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCS
T ss_pred CcCcccEEEecC-ccchhhhh-hhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcC
Confidence 467788888887 77765543 34444 6666776666665554422 225677777777
Q ss_pred Cccccc---hhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCCh--hhhcccccceeecccCcCCC-
Q psy4258 70 NNLTSL---NNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS--DIQLFSQLGSLYANNNRITS- 143 (245)
Q Consensus 70 ~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~~~~~~~L~~l~l~~~~~~~- 143 (245)
|.+... +..+..+++|++|++++|.+..++..+..+++|+.|++++|.+...++ .+..+++|+.|++++|.+..
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 436 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred CccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence 766644 456667777777777777777666667777778888887777665432 46677778888887777765
Q ss_pred chhhhcCCCCCcEEecCCCccc-cccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcC
Q psy4258 144 LDGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221 (245)
Q Consensus 144 ~~~~~~~~~~l~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 221 (245)
.+..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.+.++ |..+..+++|+.|++++|.+++.++..+..
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 3456667778888888887775 33456677777888888888887765 566777788888888888888776777777
Q ss_pred CCcccEEEccCCCCccc
Q psy4258 222 LKRLRTVDLSYNKINKF 238 (245)
Q Consensus 222 ~~~L~~l~l~~n~l~~~ 238 (245)
+++|+.+++++|+++..
T Consensus 517 l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred ccCCcEEEecCCcccCC
Confidence 78888888888877643
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=5.1e-24 Score=164.59 Aligned_cols=196 Identities=26% Similarity=0.380 Sum_probs=119.6
Q ss_pred cccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchh-hhcCCCCCcEEEe
Q psy4258 14 ALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFL 90 (245)
Q Consensus 14 ~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l 90 (245)
+.+.+++++ +.++.++.. +. ++++.|++++|.+++++..++. ++|++|++++|.++.++. .|..+++|++|++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTT-SCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccC-CCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 356677766 666665432 21 4566677777766666655444 666677776666666553 3456666677777
Q ss_pred eccccCCccc-cccCCCCccEEEecccccccCCh-hhhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCccccc
Q psy4258 91 NNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 91 ~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~ 167 (245)
++|.+..++. .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..++. .+..+++|++|++++|.++.+
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 6666665543 34556666666666666665543 24566666666666666666553 245566666666666666666
Q ss_pred cCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccc
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~ 213 (245)
++..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 55556666666666666666665544 34556666666666666543
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=183.17 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=85.4
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCcccc--chhhhcCCCCCc
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTS--LNNSLRGLTDLN 86 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~ 86 (245)
+.++++|++|++++ +.++.+.+..|..+++|+.|++++|.+++++.. ..++|++|++++|.+.. +|..+..+++|+
T Consensus 41 ~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 118 (520)
T 2z7x_B 41 ILSLSKLRILIISH-NRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118 (520)
T ss_dssp HTTCTTCCEEECCS-SCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCC
T ss_pred ccccccccEEecCC-CccCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcce
Confidence 45789999999999 999999888999999999999999999999877 45899999999999985 568899999999
Q ss_pred EEEeeccccCCccccccCCCCc--cEEEeccccc
Q psy4258 87 WLFLNNNRLKSLEGQLGTLSKL--QLLVIEQNQL 118 (245)
Q Consensus 87 ~L~l~~~~l~~~~~~~~~~~~L--~~l~l~~~~l 118 (245)
+|++++|.+.. ..+..+++| +.+++++|.+
T Consensus 119 ~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 119 FLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred EEEecCcccch--hhccccccceeeEEEeecccc
Confidence 99999988753 223333334 4444444433
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=4.5e-24 Score=188.72 Aligned_cols=110 Identities=26% Similarity=0.444 Sum_probs=92.8
Q ss_pred ccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcC
Q psy4258 130 QLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLS 207 (245)
Q Consensus 130 ~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~ 207 (245)
+++.|++++|.+..+ +..+..+++++.|++++|.++...+..+..+++|+.|++++|.+..+ +..+..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 455555555555543 34567789999999999999988888899999999999999999876 6678899999999999
Q ss_pred CCcccccchhhhcCCCcccEEEccCCCCcccc
Q psy4258 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 208 ~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
+|.+.+..+..+..+++|+.|++++|.++.++
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 99999988888899999999999999988765
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.3e-24 Score=181.96 Aligned_cols=208 Identities=19% Similarity=0.270 Sum_probs=172.2
Q ss_pred eeccCccccccEEeeCCCCCceecCCCCCCCCcccceeecccccccccc--CCCC--CCcccEEEecCCccccchhhhcC
Q psy4258 6 YFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIH--ENAF--PPTIRKLHVGFNNLTSLNNSLRG 81 (245)
Q Consensus 6 ~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~--~~~~--~~~L~~L~l~~~~~~~~~~~~~~ 81 (245)
.+|...+++|+.|++.+ +.+....+. ..+++|+.|++++|.++... +..+ .++|++|++++|.+..++..+..
T Consensus 318 ~l~~~~l~~L~~L~l~~-n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 394 (570)
T 2z63_A 318 QFPTLKLKSLKRLTFTS-NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394 (570)
T ss_dssp SCCBCBCSSCCEEEEES-CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET
T ss_pred ccCcccccccCEEeCcC-Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc
Confidence 34445666777777777 555443332 56789999999999887653 1111 28999999999999988866999
Q ss_pred CCCCcEEEeeccccCCcc--ccccCCCCccEEEeccccccc-CChhhhcccccceeecccCcCC--CchhhhcCCCCCcE
Q psy4258 82 LTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRIT--SLDGLLRGLTKLQV 156 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~l~l~~~~~~--~~~~~~~~~~~l~~ 156 (245)
+++|++|++++|.+...+ ..+..+++|+.|++++|.+.. .+..+..+++|+.|++.+|.+. .+|..+..+++|++
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 999999999999988654 367889999999999998885 4667888999999999999987 47888889999999
Q ss_pred EecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccccch
Q psy4258 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLL 216 (245)
Q Consensus 157 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 216 (245)
|++++|.++...+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++.+..+
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9999999999888899999999999999999998754 57889999999999999988644
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.6e-25 Score=176.85 Aligned_cols=213 Identities=23% Similarity=0.295 Sum_probs=184.6
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEE
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 88 (245)
+..+++|++|++++ +.+....+ +..+++|+.|++++|.+++++.. ++|++|++++|.+..++. ..+++|++|
T Consensus 54 ~~~l~~L~~L~Ls~-n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~---~~L~~L~l~~n~l~~~~~--~~~~~L~~L 125 (317)
T 3o53_A 54 LAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC--SRGQGKKNI 125 (317)
T ss_dssp HTTCTTCCEEECTT-SCCEEEEE--ETTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCSEEEE--CCCSSCEEE
T ss_pred hhCCCcCCEEECCC-CcCCcchh--hhhcCCCCEEECcCCccccccCC---CCcCEEECCCCccCCcCc--cccCCCCEE
Confidence 45889999999999 99987764 88899999999999999887743 899999999999997763 347889999
Q ss_pred EeeccccCCccc-cccCCCCccEEEecccccccCC-hhh-hcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccc
Q psy4258 89 FLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALP-SDI-QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165 (245)
Q Consensus 89 ~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~-~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~ 165 (245)
++++|.+..++. .+..+++|+.|++++|.+..++ ..+ ..+++|+.|++++|.+.+++.. ..++++++|++++|.++
T Consensus 126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~ 204 (317)
T 3o53_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA 204 (317)
T ss_dssp ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCC
Confidence 999999998754 6777899999999999988653 344 4689999999999999988653 34899999999999999
Q ss_pred cccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCccc-ccchhhhcCCCcccEEEcc
Q psy4258 166 MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT-EFLLDDIRGLKRLRTVDLS 231 (245)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~l~l~ 231 (245)
..++. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++. +..+.++..++.|+.+++.
T Consensus 205 ~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 205 FMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp EECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 87654 78889999999999999999999999999999999999998 6677888888888888776
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=3.5e-24 Score=162.60 Aligned_cols=199 Identities=21% Similarity=0.311 Sum_probs=172.2
Q ss_pred eeeccccccccccCCCCCCcccEEEecCCccccchh-hhcCCCCCcEEEeeccc-cCCccc-cccCCCCccEEEecc-cc
Q psy4258 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNN-SLRGLTDLNWLFLNNNR-LKSLEG-QLGTLSKLQLLVIEQ-NQ 117 (245)
Q Consensus 42 ~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~l~l~~-~~ 117 (245)
.+++.-..++++|. +++++++|++++|.++.++. .|..+++|++|++++|. ++.++. .+..+++|++|++++ |.
T Consensus 15 ~~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 15 DFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTEEEECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT
T ss_pred cceeEccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC
Confidence 33333333777776 66899999999999998874 78899999999999997 888875 688899999999998 89
Q ss_pred cccCCh-hhhcccccceeecccCcCCCchhhhcCCCCCc---EEecCCC-ccccccCccCCCCCCCC-EEEccCCccccc
Q psy4258 118 LEALPS-DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ---VFNMDFN-QITMVRRDEFQNLHNLD-SISLQNNQITSM 191 (245)
Q Consensus 118 l~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~---~L~l~~~-~l~~~~~~~~~~~~~L~-~L~l~~~~i~~~ 191 (245)
+..++. .+..+++|+.|++.+|.+..+|. +..+++++ +|++++| .++.+++..+..+++|+ .+++++|.++.+
T Consensus 93 l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i 171 (239)
T 2xwt_C 93 LTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171 (239)
T ss_dssp CCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE
T ss_pred eeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc
Confidence 987764 57789999999999999999887 77788888 9999999 99998888899999999 999999999988
Q ss_pred cccccCCCCccEEEcCCCc-ccccchhhhcCC-CcccEEEccCCCCcccccCCC
Q psy4258 192 NSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGL-KRLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 192 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-~~L~~l~l~~n~l~~~~~~~~ 243 (245)
|......++|+.|++++|+ +++..+.++..+ ++|+.|++++|+++.++...+
T Consensus 172 ~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 172 QGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp CTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred CHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 8765555899999999995 998878889999 999999999999999886543
No 65
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=1.2e-24 Score=184.01 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=103.9
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCcccc--chhhhcCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTS--LNNSLRGLTD 84 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~--~~~~~~~~~~ 84 (245)
+.++++|++|++++ +.+..+++..|..+++|+.|++++|.++++++..+. ++|++|++++|.+.. .+..+..+++
T Consensus 46 ~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 124 (549)
T 2z81_A 46 LRACANLQVLILKS-SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124 (549)
T ss_dssp TSSCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hhcCCcccEEECCC-CCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence 45889999999999 999999888899999999999999998887765443 789999999998874 4567888889
Q ss_pred CcEEEeeccc-cCCcc-ccccCCCCccEEEeccccccc-CChhhh------------------------cccccceeecc
Q psy4258 85 LNWLFLNNNR-LKSLE-GQLGTLSKLQLLVIEQNQLEA-LPSDIQ------------------------LFSQLGSLYAN 137 (245)
Q Consensus 85 L~~L~l~~~~-l~~~~-~~~~~~~~L~~l~l~~~~l~~-~~~~~~------------------------~~~~L~~l~l~ 137 (245)
|++|++++|. +..++ ..+..+++|+.|++++|.+.. .|..+. .+++|+.|++.
T Consensus 125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 204 (549)
T 2z81_A 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204 (549)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEE
T ss_pred ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEcc
Confidence 9999998887 55565 467778888888888877663 333332 35667777777
Q ss_pred cCcCCC
Q psy4258 138 NNRITS 143 (245)
Q Consensus 138 ~~~~~~ 143 (245)
+|.+..
T Consensus 205 ~n~l~~ 210 (549)
T 2z81_A 205 DTNLAR 210 (549)
T ss_dssp SCBCTT
T ss_pred CCcccc
Confidence 766554
No 66
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.92 E-value=5e-24 Score=167.62 Aligned_cols=222 Identities=23% Similarity=0.319 Sum_probs=190.7
Q ss_pred eccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCc
Q psy4258 7 FEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLN 86 (245)
Q Consensus 7 ~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 86 (245)
+|+..+..+....+.. ..+.... .+..+++|+.|+++++.+++++.....++|++|++++|.+..++. +..+++|+
T Consensus 13 ~pd~~l~~~~~~~l~~-~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~ 88 (308)
T 1h6u_A 13 FPDPALANAIKIAAGK-SNVTDTV--TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKIT 88 (308)
T ss_dssp CCSHHHHHHHHHHTTC-SSTTSEE--CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCC
T ss_pred cCCHHHHHHHHHHhCC-CCcCcee--cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCC
Confidence 4556666666666666 5655432 244678999999999999888754445899999999999998877 89999999
Q ss_pred EEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcccc
Q psy4258 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 87 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 166 (245)
+|++++|.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+.+++. +..+++|+.|++++|.++.
T Consensus 89 ~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 89 ELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp EEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred EEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC
Confidence 9999999999875 68889999999999999988764 8889999999999999999876 7889999999999999988
Q ss_pred ccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.++ +..+++|+.|++++|.+..++. +..+++|+.|++++|++.+.. .+..+++|+.|++++|+++..+.
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred Chh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 755 8889999999999999998865 788999999999999999865 38899999999999999987654
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.9e-23 Score=177.85 Aligned_cols=215 Identities=26% Similarity=0.268 Sum_probs=127.0
Q ss_pred ceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCC
Q psy4258 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLT 83 (245)
Q Consensus 4 ~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 83 (245)
+..+|..-.++|++|++++ +.++.++. .+++|+.|++++|.++.++. ..++|++|++++|.+..+|. .+.
T Consensus 52 L~~lp~~l~~~L~~L~L~~-N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~ 121 (622)
T 3g06_A 52 LTTLPDCLPAHITTLVIPD-NNLTSLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPS 121 (622)
T ss_dssp CSCCCSCCCTTCSEEEECS-CCCSCCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCT
T ss_pred cCccChhhCCCCcEEEecC-CCCCCCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCC
Confidence 3344444446667777776 66665543 34566666666666666554 23566666666665555543 234
Q ss_pred CCcEEEeeccccCCccccccCCCCccEEEecccccccCChh---h--------------hcccccceeecccCcCCCchh
Q psy4258 84 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD---I--------------QLFSQLGSLYANNNRITSLDG 146 (245)
Q Consensus 84 ~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~---~--------------~~~~~L~~l~l~~~~~~~~~~ 146 (245)
+|++|++++|.++.+|.. +++|++|++++|.+..+|.. + ..+++|+.|++++|.+..+|.
T Consensus 122 ~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 122 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred CcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC
Confidence 444444444444443332 13344444444433322211 1 112445555555555444332
Q ss_pred hhc-----------------CCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCC
Q psy4258 147 LLR-----------------GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209 (245)
Q Consensus 147 ~~~-----------------~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n 209 (245)
... .+++|+.|++++|.++.++ ..+++|+.|++++|.++.+|. .+++|+.|++++|
T Consensus 199 ~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC
Confidence 110 1256777777777776654 345678888888888887766 5678999999999
Q ss_pred cccccchhhhcCCCcccEEEccCCCCcccc
Q psy4258 210 QLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 210 ~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
.++. +|..+..+++|+.|++++|+++...
T Consensus 272 ~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 272 QLTR-LPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCCS-CCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCc-CCHHHhhccccCEEEecCCCCCCcC
Confidence 8885 4677888999999999999987653
No 68
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=3.5e-23 Score=171.07 Aligned_cols=209 Identities=24% Similarity=0.284 Sum_probs=167.5
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEE
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 88 (245)
...+++|++|++++ +.++.++ +..+++|+.|++++|.+++++.. -.++|++|++++|.++.++ +..+++|++|
T Consensus 60 l~~l~~L~~L~Ls~-n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~-~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 60 IEKLTGLTKLICTS-NNITTLD---LSQNTNLTYLACDSNKLTNLDVT-PLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp GGGCTTCSEEECCS-SCCSCCC---CTTCTTCSEEECCSSCCSCCCCT-TCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred hcccCCCCEEEccC-CcCCeEc---cccCCCCCEEECcCCCCceeecC-CCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 35788999999999 8888874 77889999999999998887522 2389999999999998875 7889999999
Q ss_pred EeeccccCCccccccCCCCccEEEecccc-cccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccc
Q psy4258 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQ-LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 89 ~l~~~~l~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~ 167 (245)
++++|.++.++ +..+++|+.+++++|. +..+ .+..+++|+.|++++|.+..+| +..+++++.|++++|.++..
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee
Confidence 99999998874 7788999999998884 4444 3667888999999999888876 67788899999999888776
Q ss_pred cCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
.++.+++|+.|++++|.++.+| +..+++|+.|++++|.+++.. +..+++|+.+++++|.+..+
T Consensus 207 ---~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L 269 (457)
T 3bz5_A 207 ---DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEI 269 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCC
T ss_pred ---ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEE
Confidence 3777888999999999988876 778888999999999888854 34455555555555555444
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=1.5e-23 Score=179.89 Aligned_cols=109 Identities=25% Similarity=0.299 Sum_probs=85.3
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L 85 (245)
+.++++|++|+|++ +.++.+++.+|.++++|+.|++++|.++.+++..|. ++|++|++++|.++.++ ..|..+++|
T Consensus 72 f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 72 FFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp TTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 45788899999988 888888888888888899999998888888877665 78888888888888776 457788888
Q ss_pred cEEEeeccccCC--ccccccCCCCccEEEeccccc
Q psy4258 86 NWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQL 118 (245)
Q Consensus 86 ~~L~l~~~~l~~--~~~~~~~~~~L~~l~l~~~~l 118 (245)
++|++++|.+.. ++..+..+++|++|++++|.+
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 888888887764 355566677777777766644
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-24 Score=179.02 Aligned_cols=213 Identities=23% Similarity=0.287 Sum_probs=184.9
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEE
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 88 (245)
+..+++|+.|++++ +.+....+ +..+++|+.|++++|.+++++.. ++|++|++++|.+..++. ..+++|++|
T Consensus 54 ~~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~~N~l~~~~~--~~l~~L~~L 125 (487)
T 3oja_A 54 LAPFTKLELLNLSS-NVLYETLD--LESLSTLRTLDLNNNYVQELLVG---PSIETLHAANNNISRVSC--SRGQGKKNI 125 (487)
T ss_dssp GTTCTTCCEEECTT-SCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECCSSCCCCEEE--CCCSSCEEE
T ss_pred HhCCCCCCEEEeeC-CCCCCCcc--cccCCCCCEEEecCCcCCCCCCC---CCcCEEECcCCcCCCCCc--cccCCCCEE
Confidence 45889999999999 99987765 88999999999999999988754 899999999999997764 356899999
Q ss_pred EeeccccCCc-cccccCCCCccEEEecccccccC-Chhhh-cccccceeecccCcCCCchhhhcCCCCCcEEecCCCccc
Q psy4258 89 FLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL-PSDIQ-LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165 (245)
Q Consensus 89 ~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~-~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~ 165 (245)
++++|.+..+ +..+..+++|+.|++++|.+... |..+. .+++|+.|++++|.+.+++. ...+++|+.|++++|.++
T Consensus 126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp ECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCC
Confidence 9999999876 45778899999999999999854 55554 78999999999999998865 345899999999999999
Q ss_pred cccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCccc-ccchhhhcCCCcccEEEcc
Q psy4258 166 MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT-EFLLDDIRGLKRLRTVDLS 231 (245)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~l~l~ 231 (245)
..++. +..+++|+.|++++|.+..+|..+..+++|+.|++++|.+. +.++.++..++.++.+++.
T Consensus 205 ~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 205 FMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 87654 78889999999999999999999999999999999999998 5567788888888777764
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.6e-24 Score=167.54 Aligned_cols=203 Identities=24% Similarity=0.286 Sum_probs=94.2
Q ss_pred ccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcEEE
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLF 89 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 89 (245)
.+++|+.|++.+ +.+..++ .+..+++|+.|++++|.+++++...-.++|++|++++|.++.++ ..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~-~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANN-SDIKSVQ--GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTT-SCCCCCT--TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCC-CCccccc--ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 344455555555 4444332 23444555555555555444432222245555555555554443 2234455555555
Q ss_pred eeccccCCcccc-ccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCcccc
Q psy4258 90 LNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 90 l~~~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~ 166 (245)
+++|.+..++.. +..+++|++|++++|.+..+++. +..+++|+.|++++|.+.+++. .+..+++|++|++++|.++.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 555555444332 34445555555555544444332 3444555555555555544432 23444555555555555544
Q ss_pred ccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCC
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 222 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 222 (245)
.++..+..+++|+.|++++|.+.. .+++++.++++.|.+.|.+|.+++.+
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 444444445555555555544331 23344445555555555455444443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=9.6e-23 Score=157.43 Aligned_cols=186 Identities=26% Similarity=0.375 Sum_probs=165.5
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhh
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSL 79 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~ 79 (245)
.+..+|..-.+++++|++++ +.+..+++..|..+++|+.|++++|.++.++...|. ++|++|++++|.+..++ ..+
T Consensus 27 ~l~~ip~~~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 105 (270)
T 2o6q_A 27 KLTAIPSNIPADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105 (270)
T ss_dssp CCSSCCSCCCTTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCccCCCCCCCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHc
Confidence 35566766678899999999 999999988999999999999999999999887765 89999999999999887 567
Q ss_pred cCCCCCcEEEeeccccCCccc-cccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcE
Q psy4258 80 RGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQV 156 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~ 156 (245)
..+++|++|++++|.+..++. .+..+++|+.|++++|.+..++.. +..+++|+.|++.+|.+..++. .+..+++|++
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 889999999999999988765 467899999999999999988765 7889999999999999998875 4778899999
Q ss_pred EecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 157 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
|++++|.++..++..+..+++|+.|++++|.+.
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 999999999888888889999999999999876
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.1e-23 Score=160.36 Aligned_cols=218 Identities=25% Similarity=0.398 Sum_probs=156.6
Q ss_pred ccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcE
Q psy4258 8 EDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNW 87 (245)
Q Consensus 8 ~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 87 (245)
++..+..+..+++.+ ..+.... .+..+++|+.|+++++.++.++.....++|++|++++|.+..++ .+..+++|++
T Consensus 14 ~~~~~~~l~~l~l~~-~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~ 89 (272)
T 3rfs_A 14 PDDAFAETIKANLKK-KSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTY 89 (272)
T ss_dssp CSHHHHHHHHHHHTC-SCTTSEE--CHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCE
T ss_pred CCchHHHHHHHHhcC-ccccccc--ccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCE
Confidence 455666666677766 5554442 24456778888888888777665444578888888888877764 5677888888
Q ss_pred EEeeccccCCcccc-ccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCcc
Q psy4258 88 LFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 88 L~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l 164 (245)
|++++|.++.++.. +..+++|++|++++|.+..++.. +..+++|+.|++++|.+..++. .+..+++|++|++++|.+
T Consensus 90 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 90 LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCc
Confidence 88888888776543 56778888888888887766554 5777888888888888877654 346778888888888888
Q ss_pred ccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCc
Q psy4258 165 TMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236 (245)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~ 236 (245)
+..++..++.+++|+.|++++|.+..++. .+..+++|+.|++++|++.+. ++.++.+++.+|.++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHS 235 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTG
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCC
Confidence 77776677778888888888888887654 356778888888888877653 334555555555444
No 74
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.6e-23 Score=171.72 Aligned_cols=182 Identities=27% Similarity=0.354 Sum_probs=101.7
Q ss_pred ccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEeccccc
Q psy4258 39 ALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 118 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l 118 (245)
+|+.|++++|.+++++. ..++|++|++++|.+..++.. .++|++|++++|.++.+| .+..+++|+++++++|.+
T Consensus 92 ~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 92 HLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp TCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred CCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcC
Confidence 44444444444444332 124455555555544443321 145666666666666555 355666666666666665
Q ss_pred ccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCC
Q psy4258 119 EALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 198 (245)
Q Consensus 119 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 198 (245)
..+|.. ..+|+.|++++|.+..+| .+..++++++|++++|.++.++. ..++|+.|++++|.+..+|. +..+
T Consensus 166 ~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~lp~-~~~l 236 (454)
T 1jl5_A 166 KKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELPE-LQNL 236 (454)
T ss_dssp SCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCCC-CTTC
T ss_pred cccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCcccc-cCCC
Confidence 555432 235666666666666655 35566666666666666655432 11356677777776666653 5667
Q ss_pred CCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccc
Q psy4258 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 199 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
++|+.|++++|++++. |. ..++|+.|++++|.++.++
T Consensus 237 ~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 237 PFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp TTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCC
T ss_pred CCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccC
Confidence 7777777777777663 22 1245666666666665544
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.2e-23 Score=163.33 Aligned_cols=198 Identities=20% Similarity=0.205 Sum_probs=165.1
Q ss_pred ccccccEEeeCCCCCceecCCCCC--CCCcccceeeccccccccccCCCC-------CCcccEEEecCCccccch-hhhc
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDL--KGTPALITLLLVNNNITHIHENAF-------PPTIRKLHVGFNNLTSLN-NSLR 80 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~--~~~~~L~~l~l~~~~i~~~~~~~~-------~~~L~~L~l~~~~~~~~~-~~~~ 80 (245)
++++|++|++++ +.+....+..+ ..+++|+.|++++|.+++++ ..+ .++|++|++++|.+..++ ..+.
T Consensus 93 ~l~~L~~L~L~~-n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLEN-LEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEE-EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred CcCCccEEEccC-CcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 588999999999 99986655554 88999999999999998873 222 279999999999999877 7889
Q ss_pred CCCCCcEEEeeccccCC---ccccc--cCCCCccEEEecccccccCC---hh-hhcccccceeecccCcCCCch--hhhc
Q psy4258 81 GLTDLNWLFLNNNRLKS---LEGQL--GTLSKLQLLVIEQNQLEALP---SD-IQLFSQLGSLYANNNRITSLD--GLLR 149 (245)
Q Consensus 81 ~~~~L~~L~l~~~~l~~---~~~~~--~~~~~L~~l~l~~~~l~~~~---~~-~~~~~~L~~l~l~~~~~~~~~--~~~~ 149 (245)
.+++|++|++++|.+.. ++..+ ..+++|+.|++++|.+..++ .. +..+++|+.|++++|.+.+.+ ..+.
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 99999999999998653 23444 78899999999999988443 22 356789999999999998854 3455
Q ss_pred CCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCccccc
Q psy4258 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 150 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 214 (245)
.+++|++|++++|.++.++. .+. ++|+.|++++|.++.+|. +..+++|+.|++++|++++.
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~-~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPK-GLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCS-SCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTCC
T ss_pred hcCCCCEEECCCCccChhhh-hcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCCC
Confidence 67899999999999997654 443 789999999999999876 88999999999999999873
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=7e-22 Score=163.12 Aligned_cols=182 Identities=29% Similarity=0.368 Sum_probs=126.6
Q ss_pred cccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEee
Q psy4258 12 AVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 91 (245)
.++|++|++++ +.++.++. ..++|+.|++++|.+++++. .+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 90 ~~~L~~L~l~~-n~l~~lp~----~~~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 90 PPHLESLVASC-NSLTELPE----LPQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp CTTCSEEECCS-SCCSSCCC----CCTTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred cCCCCEEEccC-CcCCcccc----ccCCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECC
Confidence 46788888888 88877542 23678888888888877653 2378888888888888877 57888888888888
Q ss_pred ccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCcc
Q psy4258 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDE 171 (245)
Q Consensus 92 ~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~ 171 (245)
+|.++.+|..+ ++|++|++++|.+..+| .+..+++|+.|++.+|.+..+|.. .+++++|++++|.++.++ .
T Consensus 162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp--~ 232 (454)
T 1jl5_A 162 NNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELP--E 232 (454)
T ss_dssp SSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCC--C
T ss_pred CCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCccc--c
Confidence 88887766543 47888888888777766 567777777777777777765542 246677777777666543 2
Q ss_pred CCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccc
Q psy4258 172 FQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 172 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
++.+++|+.|++++|.++.+|.. +++|+.|++++|.+.+
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC
T ss_pred cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc
Confidence 56666667777666666655432 2445555555554444
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=158.81 Aligned_cols=222 Identities=15% Similarity=0.097 Sum_probs=172.7
Q ss_pred cccccEEeeCCCCCceecCCC---CCCCCcccceeeccccccccccCCCC----CCcccEEEecCCccccc----h-hhh
Q psy4258 12 AVALNLIDLEPETGSHPLTSD---DLKGTPALITLLLVNNNITHIHENAF----PPTIRKLHVGFNNLTSL----N-NSL 79 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~~~~~~---~~~~~~~L~~l~l~~~~i~~~~~~~~----~~~L~~L~l~~~~~~~~----~-~~~ 79 (245)
...++.+.+.. ..+...... .+..+++|+.|++++|.+.+..+..+ .++|++|++++|.+... + ..+
T Consensus 63 ~~~l~~l~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 63 ALRVRRLTVGA-AQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SCCCCEEEECS-CCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hcceeEEEEeC-CcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 34467788877 565422111 11124569999999999887665554 38899999999988742 2 344
Q ss_pred cCCCCCcEEEeeccccCCcc-ccccCCCCccEEEeccccccc---CCh--hhhcccccceeecccCcCCCchh----hhc
Q psy4258 80 RGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA---LPS--DIQLFSQLGSLYANNNRITSLDG----LLR 149 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~---~~~--~~~~~~~L~~l~l~~~~~~~~~~----~~~ 149 (245)
..+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++. .+..+++|++|++++|.+..++. .+.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA 221 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence 67899999999999998765 577889999999999998652 222 23678899999999999987765 346
Q ss_pred CCCCCcEEecCCCccccccCccCCCC---CCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCccc
Q psy4258 150 GLTKLQVFNMDFNQITMVRRDEFQNL---HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226 (245)
Q Consensus 150 ~~~~l~~L~l~~~~l~~~~~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 226 (245)
.+++|++|++++|.++...+..+..+ ++|+.|++++|.++.+|..+. ++|+.|++++|++++. | .+..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence 78999999999999988755555555 699999999999999988764 8999999999999985 2 267889999
Q ss_pred EEEccCCCCccc
Q psy4258 227 TVDLSYNKINKF 238 (245)
Q Consensus 227 ~l~l~~n~l~~~ 238 (245)
.|++++|++++-
T Consensus 298 ~L~L~~N~l~~~ 309 (310)
T 4glp_A 298 NLTLDGNPFLVP 309 (310)
T ss_dssp CEECSSTTTSCC
T ss_pred EEECcCCCCCCC
Confidence 999999999864
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.1e-23 Score=170.87 Aligned_cols=228 Identities=19% Similarity=0.201 Sum_probs=180.9
Q ss_pred ccccccEEeeCCCCCceecCC----CCCCCCcccceeeccccccccccC----C--------CCCCcccEEEecCCcccc
Q psy4258 11 HAVALNLIDLEPETGSHPLTS----DDLKGTPALITLLLVNNNITHIHE----N--------AFPPTIRKLHVGFNNLTS 74 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~----~~~~~~~~L~~l~l~~~~i~~~~~----~--------~~~~~L~~L~l~~~~~~~ 74 (245)
.+++|++|++++ +.+....+ ..+..+++|+.|++++|.+..+.. . ...++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 30 EDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred cCCCccEEECCC-CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 578899999999 88876533 347788999999999975543321 1 123899999999999885
Q ss_pred -----chhhhcCCCCCcEEEeeccccCC-----ccccccCC---------CCccEEEecccccc--cCC---hhhhcccc
Q psy4258 75 -----LNNSLRGLTDLNWLFLNNNRLKS-----LEGQLGTL---------SKLQLLVIEQNQLE--ALP---SDIQLFSQ 130 (245)
Q Consensus 75 -----~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~---------~~L~~l~l~~~~l~--~~~---~~~~~~~~ 130 (245)
++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|.+. .++ ..+..+++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCC
Confidence 67788999999999999998863 23334344 89999999999886 334 45778899
Q ss_pred cceeecccCcCCC------chhhhcCCCCCcEEecCCCccc----cccCccCCCCCCCCEEEccCCcccc-----ccccc
Q psy4258 131 LGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQIT----MVRRDEFQNLHNLDSISLQNNQITS-----MNSSL 195 (245)
Q Consensus 131 L~~l~l~~~~~~~------~~~~~~~~~~l~~L~l~~~~l~----~~~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~ 195 (245)
|+.|++.+|.+.+ ++..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.++. ++..+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 9999999999883 2336778899999999999985 3334567788999999999999985 35666
Q ss_pred cC--CCCccEEEcCCCcccc----cchhhh-cCCCcccEEEccCCCCcccc
Q psy4258 196 SG--LTKLAYLYLSHNQLTE----FLLDDI-RGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 196 ~~--~~~L~~L~l~~n~l~~----~~~~~l-~~~~~L~~l~l~~n~l~~~~ 239 (245)
.. +++|+.|++++|.+++ .++..+ ..+++|+.|++++|.++..+
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 43 8999999999999998 366666 66899999999999998765
No 79
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=4.6e-22 Score=167.54 Aligned_cols=188 Identities=21% Similarity=0.294 Sum_probs=161.1
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeec
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNN 92 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (245)
.+++.|++++ +.++.++... .++|+.|++++|.++.++ .+.++|++|++++|.++.+|. +.. +|++|++++
T Consensus 59 ~~L~~L~Ls~-n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNR-LNLSSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCS-SCCSCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CCccEEEeCC-CCCCccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 3899999999 8998876543 268999999999999888 456899999999999998887 554 999999999
Q ss_pred cccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccC
Q psy4258 93 NRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172 (245)
Q Consensus 93 ~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~ 172 (245)
|.++.+|. .+++|+.|++++|.+..+|. .+++|+.|++++|.+..+|. +. ++|+.|++++|.++.++. +
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~ 198 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--V 198 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--C
T ss_pred CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--H
Confidence 99998887 67899999999999998876 57899999999999999888 54 899999999999987765 4
Q ss_pred CCCCCC-------CEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCC
Q psy4258 173 QNLHNL-------DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 222 (245)
Q Consensus 173 ~~~~~L-------~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 222 (245)
.. +| +.|++++|.++.+|..+..+++|+.|++++|.+++..|..+..+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred HH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 43 67 99999999999999988889999999999999999888777654
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.2e-21 Score=149.68 Aligned_cols=176 Identities=30% Similarity=0.449 Sum_probs=149.6
Q ss_pred cccceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEecc
Q psy4258 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQ 115 (245)
Q Consensus 38 ~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~ 115 (245)
...+.++++++.++.++.. ++++++.|++++|.+..++ ..+..+++|++|++++|.+..++. .+..+++|+.|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 3567899999999888764 4489999999999998765 568899999999999999987654 478889999999999
Q ss_pred cccccCCh-hhhcccccceeecccCcCCCchhh-hcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccc
Q psy4258 116 NQLEALPS-DIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 193 (245)
Q Consensus 116 ~~l~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 193 (245)
|.+..++. .+..+++|+.|++++|.+..++.. +..+++|++|++++|.++.+++..++.+++|+.|++++|.++.++.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 99987765 467889999999999999987754 5778999999999999988887788889999999999999998765
Q ss_pred -cccCCCCccEEEcCCCccccc
Q psy4258 194 -SLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 194 -~~~~~~~L~~L~l~~n~l~~~ 214 (245)
.+..+++|+.|++++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 677889999999999998775
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.88 E-value=5.3e-23 Score=160.48 Aligned_cols=197 Identities=28% Similarity=0.442 Sum_probs=136.0
Q ss_pred ccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcE
Q psy4258 8 EDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNW 87 (245)
Q Consensus 8 ~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 87 (245)
|+..+..+..+.+.. ..+..+. .+..+++|+.|+++++.+++++.....++|++|++++|.+..++. +..+++|++
T Consensus 19 ~d~~l~~~~~~~l~~-~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~ 94 (291)
T 1h6t_A 19 SDDAFAETIKDNLKK-KSVTDAV--TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGW 94 (291)
T ss_dssp CSHHHHHHHHHHTTC-SCTTSEE--CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred CCHHHHHHHHHHhcC-CCccccc--chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCE
Confidence 444455555555555 5554432 134566777777777777766544444777777777777776665 677777888
Q ss_pred EEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccc
Q psy4258 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMV 167 (245)
Q Consensus 88 L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~ 167 (245)
|++++|.+..++. +..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+.+++ .+..+++|++|++++|.++..
T Consensus 95 L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 95 LFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp EECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred EECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEccCCccccc
Confidence 8887777776554 67777777888877777665 35667777777777777777763 466677777888877777766
Q ss_pred cCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCccccc
Q psy4258 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 214 (245)
++ +..+++|+.|++++|.++.++. +..+++|+.|++++|++...
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred hh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 54 6677777788887777777653 66777777888777777653
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3.3e-21 Score=164.08 Aligned_cols=205 Identities=26% Similarity=0.251 Sum_probs=142.0
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeec
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNN 92 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 92 (245)
.+++.|++++ +.++.++.... ++|+.|++++|.++.++. ..++|++|++++|.++.+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~-n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGE-SGLTTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCS-SCCSCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecC-CCcCccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 4689999999 99998865433 789999999999998887 55899999999999998887 679999999999
Q ss_pred cccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcC-----------------CCCCc
Q psy4258 93 NRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRG-----------------LTKLQ 155 (245)
Q Consensus 93 ~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----------------~~~l~ 155 (245)
|.++.++. .+++|+.|++++|.+..+|.. +++|++|++++|.+..+|..+.. +++|+
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 184 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCc
Confidence 99998877 568899999999999888764 47888999998888776542211 15566
Q ss_pred EEecCCCccccccCccCC-----------------CCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhh
Q psy4258 156 VFNMDFNQITMVRRDEFQ-----------------NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 218 (245)
Q Consensus 156 ~L~l~~~~l~~~~~~~~~-----------------~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 218 (245)
.|++++|.++.++. .+. .+++|+.|++++|.++.+| ..+++|+.|++++|.+++. |.
T Consensus 185 ~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~l-p~- 258 (622)
T 3g06_A 185 ELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSL-PM- 258 (622)
T ss_dssp EEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC-CC-
T ss_pred EEECCCCCCCCCCC-ccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcC-Cc-
Confidence 66666666654332 110 0123444444444444433 2234455555555555542 22
Q ss_pred hcCCCcccEEEccCCCCccccc
Q psy4258 219 IRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 219 l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.+++|+.|++++|.++.++.
T Consensus 259 --~~~~L~~L~Ls~N~L~~lp~ 278 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLTRLPE 278 (622)
T ss_dssp --CCTTCCEEECCSSCCCSCCG
T ss_pred --ccccCcEEeCCCCCCCcCCH
Confidence 34556666666666665543
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=1.2e-21 Score=151.76 Aligned_cols=181 Identities=24% Similarity=0.303 Sum_probs=160.1
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchh-hhcCCCCC
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNN-SLRGLTDL 85 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~-~~~~~~~L 85 (245)
+.++++|++|++++ +.+..+.+..|..+++|+.|++++|.+++++...+. ++|++|++++|.+..++. .+..+++|
T Consensus 48 ~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 48 FFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred hccccCCcEEECCC-CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 45789999999999 999999988999999999999999999998877665 899999999999997764 68899999
Q ss_pred cEEEeeccccCC--ccccccCCCCccEEEecccccccCC-hhhhcccccc----eeecccCcCCCchhhhcCCCCCcEEe
Q psy4258 86 NWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLG----SLYANNNRITSLDGLLRGLTKLQVFN 158 (245)
Q Consensus 86 ~~L~l~~~~l~~--~~~~~~~~~~L~~l~l~~~~l~~~~-~~~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~l~~L~ 158 (245)
++|++++|.+.. +|..+..+++|+.|++++|.+..++ ..+..+++++ .+++++|.+..++.......+++.|+
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~ 206 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence 999999999986 6788999999999999999998664 4566666666 88999999998877666677999999
Q ss_pred cCCCccccccCccCCCCCCCCEEEccCCcccc
Q psy4258 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190 (245)
Q Consensus 159 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 190 (245)
+++|.++..++..+..+++|+.|++++|.+..
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99999999888788899999999999998873
No 84
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.9e-21 Score=162.73 Aligned_cols=179 Identities=27% Similarity=0.378 Sum_probs=157.2
Q ss_pred ccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEeccccc
Q psy4258 39 ALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 118 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l 118 (245)
+++.|++++|.+++++... .++|++|++++|.++.+| ..+++|++|++++|.++.+|. +.. +|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcC
Confidence 7999999999999987654 489999999999999988 567999999999999999888 654 999999999999
Q ss_pred ccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCC
Q psy4258 119 EALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 198 (245)
Q Consensus 119 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 198 (245)
..+|. .+++|+.|++++|.+..+|. .+++|+.|++++|.++.++. +. ++|+.|++++|.++.+|. +..
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~- 200 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV- 200 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC--
T ss_pred CCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH-
Confidence 98887 68899999999999999887 57899999999999988765 55 899999999999999987 543
Q ss_pred CCc-------cEEEcCCCcccccchhhhcCCCcccEEEccCCCCccc
Q psy4258 199 TKL-------AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 199 ~~L-------~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
+| +.|++++|.++. +|..+..+++|+.|++++|+++..
T Consensus 201 -~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 201 -RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp --------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCc
Confidence 77 999999999998 567777799999999999999764
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.87 E-value=4.6e-22 Score=155.15 Aligned_cols=194 Identities=27% Similarity=0.421 Sum_probs=165.8
Q ss_pred cccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccc
Q psy4258 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ 117 (245)
Q Consensus 38 ~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~ 117 (245)
.++..+.+....+.++....-.++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 3455556666666554433333789999999999998864 7889999999999999998877 8899999999999999
Q ss_pred cccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccC
Q psy4258 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 197 (245)
Q Consensus 118 l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 197 (245)
+..++ .+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+..++. +..
T Consensus 102 l~~~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~ 176 (291)
T 1h6t_A 102 VKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAG 176 (291)
T ss_dssp CCCGG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred CCCCh-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcC
Confidence 98765 4888999999999999999985 477899999999999999877 468889999999999999998866 889
Q ss_pred CCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 198 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 198 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
+++|+.|++++|.+++. + .+..+++|+.|++++|+++..+.
T Consensus 177 l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 177 LTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence 99999999999999985 3 58899999999999999876654
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=5.5e-21 Score=152.91 Aligned_cols=226 Identities=19% Similarity=0.238 Sum_probs=179.8
Q ss_pred CceeeccCccccccEEeeCCCCCceecCCCCCCCCcccceeecccccc-ccccCCCCC--CcccE-EEecCCccccch-h
Q psy4258 3 RFSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNI-THIHENAFP--PTIRK-LHVGFNNLTSLN-N 77 (245)
Q Consensus 3 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i-~~~~~~~~~--~~L~~-L~l~~~~~~~~~-~ 77 (245)
+++++|..-++++++|+|++ ++++.++..+|.++++|+.|++++|.+ +.++..+|. +++.+ +.+++|++..++ .
T Consensus 20 ~Lt~iP~~l~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 20 KVTEIPSDLPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCCSCCTTCCTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCccCcCcCCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 46677766678999999999 999999999999999999999999996 456777765 55554 666778898875 7
Q ss_pred hhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEecc-cccccCChh-hhccc-ccceeecccCcCCCchhhhcCCCC
Q psy4258 78 SLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQ-NQLEALPSD-IQLFS-QLGSLYANNNRITSLDGLLRGLTK 153 (245)
Q Consensus 78 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~-~~l~~~~~~-~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~ 153 (245)
.|..+++|++|++++|.+..+++ .+....++..+++.+ +.+..++.. +..+. .++.|++++|++..++.......+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 78999999999999999987765 344556788888865 467666543 44443 688999999999999877777788
Q ss_pred CcEEecCC-CccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccC
Q psy4258 154 LQVFNMDF-NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232 (245)
Q Consensus 154 l~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~ 232 (245)
++++++.+ |.++.++...|..+++|+.|++++|.++.+|.. .+.+|+.|.+.++.-...+| .+..+++|+.+++.+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 99999975 678888888899999999999999999999763 36677888776664333344 477888999998875
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.87 E-value=6e-22 Score=168.36 Aligned_cols=200 Identities=28% Similarity=0.446 Sum_probs=162.5
Q ss_pred eccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCc
Q psy4258 7 FEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLN 86 (245)
Q Consensus 7 ~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 86 (245)
+|+..+..+..+.+.. ..+..+.. +..+++|+.|+++++.+..++.....++|+.|++++|.+..++. +..+++|+
T Consensus 15 fpd~~l~~l~~l~l~~-~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~ 90 (605)
T 1m9s_A 15 FPDDAFAETIKDNLKK-KSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLG 90 (605)
T ss_dssp CCSHHHHHHHHHHTTC-SCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCC
T ss_pred CCcHHHHHHHHHhccC-CCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCC
Confidence 3566677777777777 66665533 45677888999999988887754455899999999998887766 78899999
Q ss_pred EEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcccc
Q psy4258 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 87 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 166 (245)
+|++++|.+..++ .+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.++ ..+..+++|+.|++++|.+..
T Consensus 91 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 91 WLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp EEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC
T ss_pred EEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC
Confidence 9999999988765 6788899999999999888763 577888999999999998888 457788999999999998887
Q ss_pred ccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccccch
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 216 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 216 (245)
.++ +..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+.+...
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCC
T ss_pred chh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcc
Confidence 755 788889999999999998874 57888999999999998877533
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.5e-20 Score=143.65 Aligned_cols=174 Identities=27% Similarity=0.376 Sum_probs=150.7
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCCcEEE
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLF 89 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~ 89 (245)
...+++++++ +.++.++.... ++++.|++++|.++.+++..+. ++|++|++++|.+..++ ..+..+++|++|+
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCC-CCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 5678899999 89988875432 5789999999999998877665 89999999999998765 5678999999999
Q ss_pred eeccccCCccc-cccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCcccc
Q psy4258 90 LNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 90 l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~ 166 (245)
+++|.++.++. .+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+..++. .+..+++|++|++++|.++.
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999988764 567889999999999999988765 5789999999999999998875 57888999999999999998
Q ss_pred ccCccCCCCCCCCEEEccCCcccc
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITS 190 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~ 190 (245)
.++..+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 888888899999999999998874
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1e-21 Score=156.15 Aligned_cols=225 Identities=16% Similarity=0.139 Sum_probs=153.8
Q ss_pred ccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccc--cCC-CCCCcccEEEecCCccc-cchhhhcCCCCCcEE
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHI--HEN-AFPPTIRKLHVGFNNLT-SLNNSLRGLTDLNWL 88 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~--~~~-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L 88 (245)
++++.+++.+ +.+....+. +..+++|+.|++++|.+++. +.. .-.++|++|++++|.+. ..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~-n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPR-SFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTT-CEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCC-ccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 6778888888 777766554 44678888888888876542 211 11278888888888776 455677778888888
Q ss_pred Eeecc-ccC--CccccccCCCCccEEEeccc-cccc--CChhhhccc-ccceeecccCc--CC--CchhhhcCCCCCcEE
Q psy4258 89 FLNNN-RLK--SLEGQLGTLSKLQLLVIEQN-QLEA--LPSDIQLFS-QLGSLYANNNR--IT--SLDGLLRGLTKLQVF 157 (245)
Q Consensus 89 ~l~~~-~l~--~~~~~~~~~~~L~~l~l~~~-~l~~--~~~~~~~~~-~L~~l~l~~~~--~~--~~~~~~~~~~~l~~L 157 (245)
++++| .++ .++..+..+++|+.|++++| .+.. ++..+..++ +|+.|++++|. +. .++..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 88888 565 25556777788888888888 7763 556677788 88888888884 43 356666678888888
Q ss_pred ecCCCc-cccccCccCCCCCCCCEEEccCCc-ccc-ccccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCC
Q psy4258 158 NMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQ-ITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234 (245)
Q Consensus 158 ~l~~~~-l~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~ 234 (245)
++++|. ++......+..+++|+.|++++|. +.. ....+..+++|+.|++++| +.......+. ..+..|++++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH 304 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence 888887 555445567777888888888874 321 1134667888888888888 4443222332 234455578888
Q ss_pred CcccccCC
Q psy4258 235 INKFGTRN 242 (245)
Q Consensus 235 l~~~~~~~ 242 (245)
++...+..
T Consensus 305 l~~~~~~~ 312 (336)
T 2ast_B 305 FTTIARPT 312 (336)
T ss_dssp SCCTTCSS
T ss_pred CccccCCc
Confidence 87765443
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.85 E-value=2.3e-21 Score=164.73 Aligned_cols=195 Identities=28% Similarity=0.436 Sum_probs=169.3
Q ss_pred CcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEeccc
Q psy4258 37 TPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN 116 (245)
Q Consensus 37 ~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~ 116 (245)
+.++..+.+..+.+.++....-.++|+.|++++|.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 3456667777777766554333388999999999999886 57889999999999999998876 888999999999999
Q ss_pred ccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccccccccc
Q psy4258 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196 (245)
Q Consensus 117 ~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 196 (245)
.+..++ .+..+++|+.|++++|.+.+++. +..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..++. +.
T Consensus 98 ~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 98 KIKDLS-SLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp CCCCCT-TSTTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCCCCh-hhccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hc
Confidence 998775 68889999999999999999864 77899999999999999877 468889999999999999998866 88
Q ss_pred CCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 197 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.+++|+.|+|++|.+.+. ..+..+++|+.|++++|++...+.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 999999999999999985 468899999999999999887654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.1e-21 Score=156.11 Aligned_cols=220 Identities=16% Similarity=0.141 Sum_probs=177.3
Q ss_pred ccccEEeeCCCCCceecCCCCCCCC--cccceeeccccccccccCCCCC-CcccEEEecCCcccc--chhhhcCCCCCcE
Q psy4258 13 VALNLIDLEPETGSHPLTSDDLKGT--PALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTS--LNNSLRGLTDLNW 87 (245)
Q Consensus 13 ~~L~~l~l~~~~~l~~~~~~~~~~~--~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~--~~~~~~~~~~L~~ 87 (245)
..++++++++ +.+. +..+..+ ++++.++++++.+.+.....+. ++|++|++++|.+.. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~-~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTG-KNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTT-CBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeecccc-ccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3478899998 7665 2234444 6899999999998877665444 899999999998873 7788899999999
Q ss_pred EEeeccccC-CccccccCCCCccEEEeccc-ccc--cCChhhhcccccceeecccC-cCCC--chhhhcCCC-CCcEEec
Q psy4258 88 LFLNNNRLK-SLEGQLGTLSKLQLLVIEQN-QLE--ALPSDIQLFSQLGSLYANNN-RITS--LDGLLRGLT-KLQVFNM 159 (245)
Q Consensus 88 L~l~~~~l~-~~~~~~~~~~~L~~l~l~~~-~l~--~~~~~~~~~~~L~~l~l~~~-~~~~--~~~~~~~~~-~l~~L~l 159 (245)
|++++|.+. ..+..+..+++|+.|++++| .+. .++..+..+++|+.|++.+| .+.+ ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999887 45677888999999999999 566 36666888999999999999 8885 567778889 9999999
Q ss_pred CCCc--cc-cccCccCCCCCCCCEEEccCCc-cc-cccccccCCCCccEEEcCCCc-ccccchhhhcCCCcccEEEccCC
Q psy4258 160 DFNQ--IT-MVRRDEFQNLHNLDSISLQNNQ-IT-SMNSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYN 233 (245)
Q Consensus 160 ~~~~--l~-~~~~~~~~~~~~L~~L~l~~~~-i~-~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~l~l~~n 233 (245)
++|. ++ ...+..+..+++|+.|++++|. ++ ..+..+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9994 44 2223456678999999999999 55 456678889999999999994 54444446888999999999999
Q ss_pred CCcc
Q psy4258 234 KINK 237 (245)
Q Consensus 234 ~l~~ 237 (245)
++.
T Consensus 283 -i~~ 285 (336)
T 2ast_B 283 -VPD 285 (336)
T ss_dssp -SCT
T ss_pred -cCH
Confidence 443
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=1.4e-21 Score=157.02 Aligned_cols=227 Identities=16% Similarity=0.226 Sum_probs=173.0
Q ss_pred ccccccEEeeCCCCCceecCC----CCCCCCc-ccceeeccccccccccCCCC-------CCcccEEEecCCccccch-h
Q psy4258 11 HAVALNLIDLEPETGSHPLTS----DDLKGTP-ALITLLLVNNNITHIHENAF-------PPTIRKLHVGFNNLTSLN-N 77 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~----~~~~~~~-~L~~l~l~~~~i~~~~~~~~-------~~~L~~L~l~~~~~~~~~-~ 77 (245)
..++|++|++++ +.+..... ..+..++ +|+.|++++|.+++.....+ .++|++|++++|.++..+ .
T Consensus 20 ~~~~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 20 IPHGVTSLDLSL-NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp SCTTCCEEECTT-SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCCceEEEccC-CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 455699999999 99988876 6677787 89999999999887654322 268999999999988543 2
Q ss_pred ----hhcCC-CCCcEEEeeccccCCccc-----cccC-CCCccEEEeccccccc-----CChhhhccc-ccceeecccCc
Q psy4258 78 ----SLRGL-TDLNWLFLNNNRLKSLEG-----QLGT-LSKLQLLVIEQNQLEA-----LPSDIQLFS-QLGSLYANNNR 140 (245)
Q Consensus 78 ----~~~~~-~~L~~L~l~~~~l~~~~~-----~~~~-~~~L~~l~l~~~~l~~-----~~~~~~~~~-~L~~l~l~~~~ 140 (245)
.+..+ ++|++|++++|.+...+. .+.. .++|+.|++++|.+.. ++..+...+ +|+.|++++|.
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence 35555 899999999999875543 2444 3699999999998873 334455565 89999999999
Q ss_pred CCCch-----hhhcCC-CCCcEEecCCCccccccC----ccCCC-CCCCCEEEccCCcccccc-----ccccCCCCccEE
Q psy4258 141 ITSLD-----GLLRGL-TKLQVFNMDFNQITMVRR----DEFQN-LHNLDSISLQNNQITSMN-----SSLSGLTKLAYL 204 (245)
Q Consensus 141 ~~~~~-----~~~~~~-~~l~~L~l~~~~l~~~~~----~~~~~-~~~L~~L~l~~~~i~~~~-----~~~~~~~~L~~L 204 (245)
+.+.. ..+... ++|++|++++|.++.... ..+.. .++|+.|++++|.+.+.+ ..+..+++|+.|
T Consensus 179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L 258 (362)
T 3goz_A 179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence 87643 345555 599999999999876321 23333 458999999999998643 345678899999
Q ss_pred EcCCCcccccc-------hhhhcCCCcccEEEccCCCCccc
Q psy4258 205 YLSHNQLTEFL-------LDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 205 ~l~~n~l~~~~-------~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
++++|.+.+.. +..+..+++|+.+++++|++...
T Consensus 259 ~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 259 YLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 99999855432 33566788899999999999766
No 93
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=2.8e-22 Score=165.97 Aligned_cols=179 Identities=21% Similarity=0.201 Sum_probs=111.6
Q ss_pred cccEEEecCCcccc-----chhhhcCCCCCcEEEeeccccCCc------cccccCCCCccEEEeccccccc-----CChh
Q psy4258 61 TIRKLHVGFNNLTS-----LNNSLRGLTDLNWLFLNNNRLKSL------EGQLGTLSKLQLLVIEQNQLEA-----LPSD 124 (245)
Q Consensus 61 ~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~~L~~l~l~~~~l~~-----~~~~ 124 (245)
+|++|++++|.++. ++..+..+++|++|++++|.+... +..+..+++|+.|++++|.+.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 56666666665553 345555666666666666665432 1122245667777777766653 4555
Q ss_pred hhcccccceeecccCcCCCc-----hhhhc-CCCCCcEEecCCCcccccc----CccCCCCCCCCEEEccCCccccc-cc
Q psy4258 125 IQLFSQLGSLYANNNRITSL-----DGLLR-GLTKLQVFNMDFNQITMVR----RDEFQNLHNLDSISLQNNQITSM-NS 193 (245)
Q Consensus 125 ~~~~~~L~~l~l~~~~~~~~-----~~~~~-~~~~l~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~i~~~-~~ 193 (245)
+..+++|+.|++++|.+.+. +..+. ..+++++|++++|.++... +..+..+++|+.|++++|.+.+. +.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 56667777777777766532 22222 2257777777777765432 23444567788888888877743 12
Q ss_pred ----cccC-CCCccEEEcCCCcccc----cchhhhcCCCcccEEEccCCCCcccc
Q psy4258 194 ----SLSG-LTKLAYLYLSHNQLTE----FLLDDIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 194 ----~~~~-~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
.+.. .++|+.|++++|.+++ .++..+..+++|+.|++++|+++..+
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~ 414 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence 2222 5688888888888885 45667777888888888888887653
No 94
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=9.1e-22 Score=158.16 Aligned_cols=221 Identities=20% Similarity=0.223 Sum_probs=168.1
Q ss_pred EeeCCCCCceecCCCCCCCCcccceeeccccccccccC----CCCC--C-cccEEEecCCccccc-hhhhcC----C-CC
Q psy4258 18 IDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHE----NAFP--P-TIRKLHVGFNNLTSL-NNSLRG----L-TD 84 (245)
Q Consensus 18 l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~----~~~~--~-~L~~L~l~~~~~~~~-~~~~~~----~-~~ 84 (245)
++++. +.++...+..+...++|+.|++++|.+++.+. .++. + +|++|++++|.+... +..+.. . ++
T Consensus 3 ~~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTL-HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCC-CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccc-ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 56777 77877666656666679999999999988765 3322 4 899999999998854 344433 2 99
Q ss_pred CcEEEeeccccCCccc-----cccCC-CCccEEEecccccccCCh-hh----hc-ccccceeecccCcCCC-----chhh
Q psy4258 85 LNWLFLNNNRLKSLEG-----QLGTL-SKLQLLVIEQNQLEALPS-DI----QL-FSQLGSLYANNNRITS-----LDGL 147 (245)
Q Consensus 85 L~~L~l~~~~l~~~~~-----~~~~~-~~L~~l~l~~~~l~~~~~-~~----~~-~~~L~~l~l~~~~~~~-----~~~~ 147 (245)
|++|++++|.+..... .+... ++|+.|++++|.+...+. .+ .. .++|+.|++++|.+.+ ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999875433 25555 899999999999886543 22 23 3699999999999884 4555
Q ss_pred hcCCC-CCcEEecCCCccccccCc----cCCCC-CCCCEEEccCCcccc-----ccccccC-CCCccEEEcCCCcccccc
Q psy4258 148 LRGLT-KLQVFNMDFNQITMVRRD----EFQNL-HNLDSISLQNNQITS-----MNSSLSG-LTKLAYLYLSHNQLTEFL 215 (245)
Q Consensus 148 ~~~~~-~l~~L~l~~~~l~~~~~~----~~~~~-~~L~~L~l~~~~i~~-----~~~~~~~-~~~L~~L~l~~n~l~~~~ 215 (245)
+...+ ++++|++++|.++..... .+..+ ++|+.|++++|.+.. ++..+.. .++|+.|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 66665 999999999999776543 33344 589999999999997 5666655 459999999999999865
Q ss_pred hh----hhcCCCcccEEEccCCCCcccc
Q psy4258 216 LD----DIRGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 216 ~~----~l~~~~~L~~l~l~~n~l~~~~ 239 (245)
+. .+..+++|+.|++++|.++.++
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccC
Confidence 53 3466789999999999855443
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.83 E-value=6.5e-21 Score=146.50 Aligned_cols=172 Identities=23% Similarity=0.345 Sum_probs=145.4
Q ss_pred CCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecc
Q psy4258 36 GTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ 115 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~ 115 (245)
.+.+++.+++.++.+++++...-.++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|+.|++++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 46678888999988888763222389999999999999887 67889999999999999998877 88899999999999
Q ss_pred cccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccc
Q psy4258 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL 195 (245)
Q Consensus 116 ~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 195 (245)
|.+..++.... ++|+.|++++|.+.+++. +..+++|+.|++++|.++..+ .+..+++|+.|++++|.+.++ ..+
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred CccCCcCcccc--CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHh
Confidence 99887765333 889999999999998864 788899999999999988774 577889999999999999987 667
Q ss_pred cCCCCccEEEcCCCcccccc
Q psy4258 196 SGLTKLAYLYLSHNQLTEFL 215 (245)
Q Consensus 196 ~~~~~L~~L~l~~n~l~~~~ 215 (245)
..+++|+.|++++|.+.+..
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCC
T ss_pred ccCCCCCEEeCCCCcccCCc
Confidence 88899999999999888753
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.4e-21 Score=155.44 Aligned_cols=204 Identities=20% Similarity=0.225 Sum_probs=163.4
Q ss_pred CCCCcccceeeccccccccccCCC----C--CCcccEEEecCCccc----cch-------hhhcCCCCCcEEEeeccccC
Q psy4258 34 LKGTPALITLLLVNNNITHIHENA----F--PPTIRKLHVGFNNLT----SLN-------NSLRGLTDLNWLFLNNNRLK 96 (245)
Q Consensus 34 ~~~~~~L~~l~l~~~~i~~~~~~~----~--~~~L~~L~l~~~~~~----~~~-------~~~~~~~~L~~L~l~~~~l~ 96 (245)
+..+++|+.|++++|.++...... + .++|++|++++|.+. .+| .++..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 445788999999999887753322 2 389999999997544 233 33478999999999999988
Q ss_pred C-----ccccccCCCCccEEEeccccccc-----CChhhhcc---------cccceeecccCcCCC--ch---hhhcCCC
Q psy4258 97 S-----LEGQLGTLSKLQLLVIEQNQLEA-----LPSDIQLF---------SQLGSLYANNNRITS--LD---GLLRGLT 152 (245)
Q Consensus 97 ~-----~~~~~~~~~~L~~l~l~~~~l~~-----~~~~~~~~---------~~L~~l~l~~~~~~~--~~---~~~~~~~ 152 (245)
. ++..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|++.+ ++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 6 66778889999999999998862 33334455 899999999999873 44 4667789
Q ss_pred CCcEEecCCCcccc-----ccCccCCCCCCCCEEEccCCccc-----cccccccCCCCccEEEcCCCccccc----chhh
Q psy4258 153 KLQVFNMDFNQITM-----VRRDEFQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEF----LLDD 218 (245)
Q Consensus 153 ~l~~L~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~ 218 (245)
+|++|++++|.++. ..+..+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+++. ++.+
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 99999999998873 22336778899999999999994 5677888999999999999999886 3455
Q ss_pred hc--CCCcccEEEccCCCCcc
Q psy4258 219 IR--GLKRLRTVDLSYNKINK 237 (245)
Q Consensus 219 l~--~~~~L~~l~l~~n~l~~ 237 (245)
+. .+++|+.|++++|.++.
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBH
T ss_pred HhhccCCCeEEEECcCCcCCH
Confidence 63 38999999999999987
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.6e-19 Score=144.45 Aligned_cols=218 Identities=20% Similarity=0.277 Sum_probs=154.8
Q ss_pred cEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccc-cch-hhhcCCCCCcE-EEe
Q psy4258 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT-SLN-NSLRGLTDLNW-LFL 90 (245)
Q Consensus 16 ~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~-~~~-~~~~~~~~L~~-L~l 90 (245)
++++-++ ++++.++... .+++++|++++|.|+.++..+|. ++|++|++++|.+. .++ .+|.+++++++ +.+
T Consensus 12 ~~v~C~~-~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQE-SKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEES-TTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecC-CCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 5677777 7888876532 25688999999999999888776 78999999999875 455 56778888776 455
Q ss_pred eccccCCcc-ccccCCCCccEEEecccccccCChh-hhcccccceeeccc-CcCCCchh-hhcCC-CCCcEEecCCCccc
Q psy4258 91 NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN-NRITSLDG-LLRGL-TKLQVFNMDFNQIT 165 (245)
Q Consensus 91 ~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~-~~~~~~~~-~~~~~-~~l~~L~l~~~~l~ 165 (245)
..|.+..++ ..+..+++|+++++++|.+..++.. .....++..+++.+ +.+..++. .+... ..++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 667888774 5677889999999999988866543 33445666777755 45666653 33333 35788999999988
Q ss_pred cccCccCCCCCCCCEEEcc-CCccccccc-cccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCccccc
Q psy4258 166 MVRRDEFQNLHNLDSISLQ-NNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~-~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.++...+. ..+++.+++. +|.++.+|. .+..+++|+.|++++|+++...+..+.++++|+.+ ..+.++.+|.
T Consensus 168 ~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l--~~~~l~~lP~ 241 (350)
T 4ay9_X 168 EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLPT 241 (350)
T ss_dssp EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECT--TCTTCCCCCC
T ss_pred CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhc--cCCCcCcCCC
Confidence 87766554 4578888886 467888875 56788899999999999988655555444444333 2345666653
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.82 E-value=1.4e-20 Score=144.61 Aligned_cols=176 Identities=26% Similarity=0.337 Sum_probs=153.3
Q ss_pred eccCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCc
Q psy4258 7 FEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLN 86 (245)
Q Consensus 7 ~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 86 (245)
+|+.++.+++.+++.+ +.++.+. .+..+++|+.|++++|.+++++.-...++|++|++++|.+..++. +..+++|+
T Consensus 13 ~pd~~l~~l~~l~l~~-~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~ 88 (263)
T 1xeu_A 13 FPDPGLANAVKQNLGK-QSVTDLV--SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLE 88 (263)
T ss_dssp CCSHHHHHHHHHHHTC-SCTTSEE--CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCC
T ss_pred CCCHHHHHHHHHHhcC-CCccccc--chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCC
Confidence 4677888899999999 8888776 467789999999999999988744444899999999999998877 88999999
Q ss_pred EEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcccc
Q psy4258 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 87 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 166 (245)
+|++++|.++.++.... ++|+.|++++|.+..++ .+..+++|+.|++++|++.+++ .+..+++|+.|++++|.++.
T Consensus 89 ~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 89 ELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred EEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 99999999998876444 89999999999998875 5888999999999999999987 57889999999999999987
Q ss_pred ccCccCCCCCCCCEEEccCCcccccc
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSMN 192 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~~ 192 (245)
. ..+..+++|+.|++++|.+...|
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h--HHhccCCCCCEEeCCCCcccCCc
Confidence 7 56888999999999999988654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=8.8e-20 Score=135.39 Aligned_cols=177 Identities=27% Similarity=0.357 Sum_probs=135.4
Q ss_pred ceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcEEEeeccccCCcccc-ccCCCCccEEEeccccc
Q psy4258 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQL 118 (245)
Q Consensus 41 ~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~l 118 (245)
+.++++++.+++++.. +.+++++|++++|.+..++ ..+..+++|++|++++|.++.++.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4566666666666543 3367788888888777665 3467788888888888888777654 56778888888888888
Q ss_pred ccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccccccccc
Q psy4258 119 EALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196 (245)
Q Consensus 119 ~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 196 (245)
..++.. +..+++|+.|++++|.+..++. .+..+++|++|++++|.++..++..+..+++|+.|++++|.+. .
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~ 162 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------C 162 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------C
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------c
Confidence 776654 5778888888888888887764 3677889999999999888877777888889999999988654 3
Q ss_pred CCCCccEEEcCCCcccccchhhhcCCCc
Q psy4258 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKR 224 (245)
Q Consensus 197 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 224 (245)
.+++++.|+++.|.+++.+|..++.++.
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 4677888899999999888887776653
No 100
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=5.4e-22 Score=164.31 Aligned_cols=223 Identities=20% Similarity=0.222 Sum_probs=122.5
Q ss_pred cccEEeeCCCCCceec----CCCCCCCCcccceeeccccccccccCCCC-------CCcccEEEecCCcccc-----chh
Q psy4258 14 ALNLIDLEPETGSHPL----TSDDLKGTPALITLLLVNNNITHIHENAF-------PPTIRKLHVGFNNLTS-----LNN 77 (245)
Q Consensus 14 ~L~~l~l~~~~~l~~~----~~~~~~~~~~L~~l~l~~~~i~~~~~~~~-------~~~L~~L~l~~~~~~~-----~~~ 77 (245)
+|++|++++ +.+... .+..+..+++|+.|++++|.+++.....+ .++|++|++++|.++. ++.
T Consensus 86 ~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQN-CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTT-SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred ceeEEEccC-CCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 688899988 777742 25567778888888888887765332211 1468888888777663 345
Q ss_pred hhcCCCCCcEEEeeccccCCcc-ccc----c-CCCCccEEEeccccccc-----CChhhhcccccceeecccCcCCCc--
Q psy4258 78 SLRGLTDLNWLFLNNNRLKSLE-GQL----G-TLSKLQLLVIEQNQLEA-----LPSDIQLFSQLGSLYANNNRITSL-- 144 (245)
Q Consensus 78 ~~~~~~~L~~L~l~~~~l~~~~-~~~----~-~~~~L~~l~l~~~~l~~-----~~~~~~~~~~L~~l~l~~~~~~~~-- 144 (245)
.+..+++|++|++++|.+.... ..+ . ..++|+.|++++|.+.. ++..+..+++|+.|++++|.+.+.
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 5566677777777777654221 111 1 23456666666665543 233444555555555555554431
Q ss_pred ----hhhhcCCCCCcEEecCCCcccccc----CccCCCCC-----------------------------CCCEEEccCCc
Q psy4258 145 ----DGLLRGLTKLQVFNMDFNQITMVR----RDEFQNLH-----------------------------NLDSISLQNNQ 187 (245)
Q Consensus 145 ----~~~~~~~~~l~~L~l~~~~l~~~~----~~~~~~~~-----------------------------~L~~L~l~~~~ 187 (245)
+.....++++++|++++|.++... +..+..++ +|+.|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 111113444555555555444311 11222334 45555555555
Q ss_pred ccc-----ccccccCCCCccEEEcCCCcccccchhhhcC-----CCcccEEEccCCCCcc
Q psy4258 188 ITS-----MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG-----LKRLRTVDLSYNKINK 237 (245)
Q Consensus 188 i~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-----~~~L~~l~l~~n~l~~ 237 (245)
++. ++..+..+++|+.|++++|.+.+..+..+.. .++|+.|++++|.++.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 442 2334445566666666666666544433322 4566666666666663
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.1e-19 Score=132.20 Aligned_cols=150 Identities=21% Similarity=0.250 Sum_probs=82.0
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccC
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 139 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~ 139 (245)
++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|+.|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~------------------------~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN------------------------PISGLSNLERLRIMGK 98 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG------------------------GGTTCTTCCEEEEECT
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch------------------------hhhcCCCCCEEEeECC
Confidence 44555555555555444 3445555555555555443332 3344445555555555
Q ss_pred cCCC-chhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCc-cccccccccCCCCccEEEcCCCcccccchh
Q psy4258 140 RITS-LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-ITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217 (245)
Q Consensus 140 ~~~~-~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 217 (245)
.+.+ .+..+..+++|++|++++|.++...+..++.+++|+.|++++|. +..++ .+..+++|+.|++++|.+++..
T Consensus 99 ~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-- 175 (197)
T 4ezg_A 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-- 175 (197)
T ss_dssp TCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred ccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--
Confidence 4443 23344555666666666666655444455566666666666665 55554 4566666777777777666632
Q ss_pred hhcCCCcccEEEccCCCCcc
Q psy4258 218 DIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 218 ~l~~~~~L~~l~l~~n~l~~ 237 (245)
.+..+++|+.|++++|++..
T Consensus 176 ~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp TGGGCSSCCEEEECBC----
T ss_pred HhccCCCCCEEEeeCcccCC
Confidence 55666677777777776643
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=8.9e-19 Score=131.87 Aligned_cols=151 Identities=25% Similarity=0.356 Sum_probs=109.1
Q ss_pred cccEEEecCCccccchhhhcCCCCCcEEEeeccccCCc-cccccCCCCccEEEecccccccCChh-hhcccccceeeccc
Q psy4258 61 TIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 138 (245)
Q Consensus 61 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~ 138 (245)
..+.++.+++.++.+|..+. ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++.. +..+++|+.|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45667788888887776443 7888888888888766 45677778888888888887776644 56777788888888
Q ss_pred CcCCCchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCccccc
Q psy4258 139 NRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 139 ~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~~ 214 (245)
|.+..++. .+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|++...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 87777654 3466777788888777777553 455667777888887777777653 466677777888877777653
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=4.3e-19 Score=142.46 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=112.9
Q ss_pred ceeeccccccccccCCCCCCcccEEEecCCccccch-hhhc-CCCCCcEEEeeccccCCccc-cccCCCCccEEEecccc
Q psy4258 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLR-GLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQ 117 (245)
Q Consensus 41 ~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~ 117 (245)
+.++++++.++.++.. +++.++.|++++|.++.++ ..+. .+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 5678888888877653 4467888888888888766 3344 77888888888888776653 46777777777777777
Q ss_pred cccCCh-hhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccC---CCCCCCCEEEccCCcccccc
Q psy4258 118 LEALPS-DIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF---QNLHNLDSISLQNNQITSMN 192 (245)
Q Consensus 118 l~~~~~-~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~~~i~~~~ 192 (245)
+..++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.++...+ ..+++|+.|++++|.++.++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 765544 356666777777777766655 3455666666667776666666555444 34566666666666666554
Q ss_pred c-cccCCCC--ccEEEcCCCcccc
Q psy4258 193 S-SLSGLTK--LAYLYLSHNQLTE 213 (245)
Q Consensus 193 ~-~~~~~~~--L~~L~l~~n~l~~ 213 (245)
. .+..++. ++.|++.+|++..
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEEC
T ss_pred HHHhhhccHhhcceEEecCCCccC
Confidence 2 3344443 3556666666553
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=8.8e-19 Score=131.09 Aligned_cols=151 Identities=24% Similarity=0.340 Sum_probs=126.2
Q ss_pred ccEEEecCCccccchhhhcCCCCCcEEEeeccccCCcc--ccccCCCCccEEEecccccccCCh-hhhcccccceeeccc
Q psy4258 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANN 138 (245)
Q Consensus 62 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~ 138 (245)
-+.++++++.++.+|..+ ...+++|++++|.++.++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 357899999998888655 346789999999998774 347788999999999998887655 688889999999999
Q ss_pred CcCCCchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCccccc
Q psy4258 139 NRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 139 ~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~ 214 (245)
|.+..++. .+..+++|++|++++|.++...+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99888754 577889999999999999888788888889999999999999977 66788889999999999988764
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=8e-19 Score=131.31 Aligned_cols=149 Identities=28% Similarity=0.415 Sum_probs=129.1
Q ss_pred cEEEecCCccccchhhhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEecccccccC-ChhhhcccccceeecccCc
Q psy4258 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNR 140 (245)
Q Consensus 63 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~ 140 (245)
+.++.+++.++.+|..+. ++++.|++++|.++.++. .+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 578888899998887554 789999999999988765 678889999999999998866 6678899999999999999
Q ss_pred CCCchhh-hcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccc
Q psy4258 141 ITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 141 ~~~~~~~-~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~ 213 (245)
+..+|.. +..+++|++|++++|.++..++..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++..
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9988754 5778999999999999998888889999999999999999998765 47788999999999998865
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=1.1e-18 Score=128.37 Aligned_cols=150 Identities=22% Similarity=0.340 Sum_probs=102.2
Q ss_pred CCCcccceeeccccccccccCCCCCCcccEEEecCCccccchhhhcCCCCCcEEEeeccccCC-ccccccCCCCccEEEe
Q psy4258 35 KGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS-LEGQLGTLSKLQLLVI 113 (245)
Q Consensus 35 ~~~~~L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~l~l 113 (245)
..+++|+.|+++++.+++++.....++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 467889999999999998875444589999999999877664 67889999999999999875 4666777788888888
Q ss_pred ccccccc-CChhhhcccccceeecccCc-CCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcc
Q psy4258 114 EQNQLEA-LPSDIQLFSQLGSLYANNNR-ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188 (245)
Q Consensus 114 ~~~~l~~-~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i 188 (245)
++|.+.. .+..+..+++|+.|++++|. +.+++ .+..+++|++|++++|.++..+ .+..+++|+.|++++|.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 8777663 34455566666666666665 55554 3444555555555555554432 334444444444444443
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=142.66 Aligned_cols=198 Identities=17% Similarity=0.135 Sum_probs=163.6
Q ss_pred ccccccEEeeCCCCCceecCCCCC--CCCcccceeeccccccccccC----C--CCCCcccEEEecCCccccch-hhhcC
Q psy4258 11 HAVALNLIDLEPETGSHPLTSDDL--KGTPALITLLLVNNNITHIHE----N--AFPPTIRKLHVGFNNLTSLN-NSLRG 81 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~~~~--~~~~~L~~l~l~~~~i~~~~~----~--~~~~~L~~L~l~~~~~~~~~-~~~~~ 81 (245)
.+++|++|++++ +.+....+..+ ..+++|+.|++++|.+++... . ...++|++|++++|.+..++ ..+..
T Consensus 89 ~~~~L~~L~l~~-n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLED-LKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEES-CCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred ccCceeEEEeeC-CEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence 356799999999 99988877777 889999999999999876322 1 12389999999999998766 77889
Q ss_pred CCCCcEEEeeccccCC---cc--ccccCCCCccEEEecccccccCChh----hhcccccceeecccCcCCCc-hhhhcCC
Q psy4258 82 LTDLNWLFLNNNRLKS---LE--GQLGTLSKLQLLVIEQNQLEALPSD----IQLFSQLGSLYANNNRITSL-DGLLRGL 151 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~---~~--~~~~~~~~L~~l~l~~~~l~~~~~~----~~~~~~L~~l~l~~~~~~~~-~~~~~~~ 151 (245)
+++|++|++++|.+.. ++ ..+..+++|++|++++|.+..++.. +..+++|++|++++|.+.+. |..+..+
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 9999999999998753 32 2236789999999999999765543 46789999999999999986 6555555
Q ss_pred ---CCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccccccccCCCCccEEEcCCCcccc
Q psy4258 152 ---TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 152 ---~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
++|++|++++|.++.++. .+. ++|+.|++++|.++.+|. +..+++|+.|++++|++++
T Consensus 248 ~~~~~L~~L~Ls~N~l~~lp~-~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQVPK-GLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCTTCCCEECCSSCCCSCCS-CCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred cCcCcCCEEECCCCCCCchhh-hhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 699999999999997754 333 799999999999998865 6788999999999999886
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=6.8e-19 Score=130.60 Aligned_cols=174 Identities=24% Similarity=0.324 Sum_probs=125.6
Q ss_pred cEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcCCCCCcEEEeec
Q psy4258 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNN 92 (245)
Q Consensus 16 ~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 92 (245)
+.++..+ +.+..++... .++++.|++++|.+++++...+. ++|++|++++|.++.++ ..+..+++|++|++++
T Consensus 10 ~~v~c~~-~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCS-SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecC-CCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666 6666665332 34677888888877777765553 77888888888777666 3457788888888888
Q ss_pred cccCCcccc-ccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcEEecCCCccccccC
Q psy4258 93 NRLKSLEGQ-LGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDFNQITMVRR 169 (245)
Q Consensus 93 ~~l~~~~~~-~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~ 169 (245)
|.+..++.. +..+++|+.|++++|.+..++.. +..+++|+.|++.+|.+.+++. .+..++++++|++++|.+.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 888777654 56778888888888888776654 5778888888888888887765 3667888888888888543
Q ss_pred ccCCCCCCCCEEEccCCccc-cccccccCCCC
Q psy4258 170 DEFQNLHNLDSISLQNNQIT-SMNSSLSGLTK 200 (245)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~ 200 (245)
+.++.++.|++..|.++ .+|.++..++.
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34567888888888777 56666655443
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=126.15 Aligned_cols=149 Identities=25% Similarity=0.391 Sum_probs=132.3
Q ss_pred cceeeccccccccccCCCCCCcccEEEecCCccccch--hhhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEeccc
Q psy4258 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN--NSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQN 116 (245)
Q Consensus 40 L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~ 116 (245)
-+.++++++.++.++. .+++.+++|++++|.++.++ ..|..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4689999999998875 34578899999999999874 458899999999999999998765 7889999999999999
Q ss_pred ccccCChh-hhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 117 QLEALPSD-IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 117 ~l~~~~~~-~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
.+..++.. +..+++|+.|++++|.+..+ |..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99977654 88899999999999999987 567888999999999999999988889999999999999999887
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.4e-18 Score=126.36 Aligned_cols=149 Identities=21% Similarity=0.345 Sum_probs=133.2
Q ss_pred cceeeccccccccccCCCCCCcccEEEecCCccccch-hhhcCCCCCcEEEeeccccCCc-cccccCCCCccEEEecccc
Q psy4258 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQ 117 (245)
Q Consensus 40 L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~ 117 (245)
-+.++++++.++.++.. +++++++|++++|.+..++ ..|..+++|++|++++|.+..+ +..+..+++|++|++++|.
T Consensus 13 ~~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TTEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CCEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 36788999999988764 4489999999999999887 4789999999999999999877 6789999999999999999
Q ss_pred cccCChh-hhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 118 LEALPSD-IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 118 l~~~~~~-~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
+..+|.. +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9988776 57899999999999999987 467888999999999999999998888999999999999999876
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.1e-17 Score=125.84 Aligned_cols=149 Identities=26% Similarity=0.339 Sum_probs=125.3
Q ss_pred cceeeccccccccccCCCCCCcccEEEecCCccccc-hhhhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEecccc
Q psy4258 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQ 117 (245)
Q Consensus 40 L~~l~l~~~~i~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~ 117 (245)
-+.++++++.++.++... +++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|+.|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 566888888888877643 48889999999888876 4678888999999999999888775 45778999999999998
Q ss_pred cccCChh-hhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 118 LEALPSD-IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 118 l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
+..++.. +..+++|+.|++++|.+..+|..+..+++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8877654 57888999999999999998888888899999999999998887778888899999999999877
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=6e-18 Score=135.84 Aligned_cols=139 Identities=25% Similarity=0.370 Sum_probs=68.5
Q ss_pred eeccCccccccEEeeCCCCCceecCCCCCC-CCcccceeeccccccccccCCCCC--CcccEEEecCCccccch-hhhcC
Q psy4258 6 YFEDGHAVALNLIDLEPETGSHPLTSDDLK-GTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRG 81 (245)
Q Consensus 6 ~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~-~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~ 81 (245)
.+|..-.+.++.|+|++ +.++.+....|. .+++|+.|++++|.++++++.+|. ++|++|++++|.+..++ ..|..
T Consensus 32 ~iP~~~~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 32 NVPQSLPSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp SCCSSCCTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred ccCccCCCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 34443444455555555 555555544444 455555555555555555444443 45555555555555443 23445
Q ss_pred CCCCcEEEeeccccCCc-cccccCCCCccEEEecccccccCChhh----hcccccceeecccCcCCCch
Q psy4258 82 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI----QLFSQLGSLYANNNRITSLD 145 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~~~~~----~~~~~L~~l~l~~~~~~~~~ 145 (245)
+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+|..+ ..+++|+.|++++|.+..++
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 55555555555555443 234444555555555555555444432 33455555555555555443
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1.1e-17 Score=119.78 Aligned_cols=136 Identities=20% Similarity=0.161 Sum_probs=93.6
Q ss_pred CCccEEEecccccc--cCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEc
Q psy4258 106 SKLQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 183 (245)
Q Consensus 106 ~~L~~l~l~~~~l~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 183 (245)
++|+.|++++|.+. .+|..+..+++|+.|++.+|.+..+ ..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555555544 4444455556666666666666655 44566677777777777776644555555777788888
Q ss_pred cCCcccccc--ccccCCCCccEEEcCCCcccccch---hhhcCCCcccEEEccCCCCcccccCC
Q psy4258 184 QNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL---DDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 184 ~~~~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
++|.++.++ ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.+++...
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 888777765 567778888888888888887654 47788888888888888888887654
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=2.5e-17 Score=117.97 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=100.0
Q ss_pred CCcccEEEecCCccc--cchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEeccccccc-CChhhhcccccceee
Q psy4258 59 PPTIRKLHVGFNNLT--SLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLY 135 (245)
Q Consensus 59 ~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~l~ 135 (245)
++++++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|+.|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 477888888888887 7777777888888888888888877 667778888888888888776 566666677888888
Q ss_pred cccCcCCCch--hhhcCCCCCcEEecCCCccccccC---ccCCCCCCCCEEEccCCccccccc
Q psy4258 136 ANNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRR---DEFQNLHNLDSISLQNNQITSMNS 193 (245)
Q Consensus 136 l~~~~~~~~~--~~~~~~~~l~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~~~i~~~~~ 193 (245)
+++|.+.+++ ..+..+++|++|++++|.++..+. ..+..+++|+.|++++|.+.++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 8888777765 556667777777777777766554 356666777777777776666554
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=3.3e-17 Score=129.92 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=54.5
Q ss_pred cccccEEeeCCCCCce--------------------ecCCCCCCC--------CcccceeeccccccccccCCCCC--Cc
Q psy4258 12 AVALNLIDLEPETGSH--------------------PLTSDDLKG--------TPALITLLLVNNNITHIHENAFP--PT 61 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~--------------------~~~~~~~~~--------~~~L~~l~l~~~~i~~~~~~~~~--~~ 61 (245)
+++|+.|+|++ +.+. .++..+|.+ +++|+.+++++ .++.++..+|. ++
T Consensus 48 l~~L~~LdLs~-n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISN-AEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEE-EEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTT
T ss_pred hccCeEEecCc-ceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcc
Confidence 67799999998 8877 455566666 77777777777 67777777775 67
Q ss_pred ccEEEecCCccccch-hhhcCCCCCcEEEeec
Q psy4258 62 IRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNN 92 (245)
Q Consensus 62 L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 92 (245)
|+++++..+.+..++ .+|..+.++..+....
T Consensus 126 L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 777777777766555 5566655555554433
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=1.1e-19 Score=153.46 Aligned_cols=178 Identities=18% Similarity=0.251 Sum_probs=99.7
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccc--------------cCCccccccCCCCccEEE-ecccccccCCh-
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNR--------------LKSLEGQLGTLSKLQLLV-IEQNQLEALPS- 123 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~--------------l~~~~~~~~~~~~L~~l~-l~~~~l~~~~~- 123 (245)
+.|+.|++++|.+..+|..+..+.+|+.|+++++. ....|..+..+++|+.|+ +..+.+..++.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 55556666666666666666666666666654442 112233444445555555 33332221111
Q ss_pred -----hhhc--ccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccccccccc
Q psy4258 124 -----DIQL--FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196 (245)
Q Consensus 124 -----~~~~--~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 196 (245)
.+.. ...|+.|++++|.+..+|. +..+++|+.|++++|.++.+ |..++.+++|+.|++++|.++.+| .+.
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~lp-~l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD-GVA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCCc-ccC
Confidence 0111 1245666666666666665 55666666666666666644 335566666666666666666665 556
Q ss_pred CCCCccEEEcCCCcccccc-hhhhcCCCcccEEEccCCCCccccc
Q psy4258 197 GLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 197 ~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.+++|+.|++++|.+++.. |..++.+++|+.|++++|+++..++
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6666666666666666654 5666666666666666666665543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1e-19 Score=153.78 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=153.4
Q ss_pred CCCcccceeeccccccccccCCCCC-CcccEEEecCCc--------------cccchhhhcCCCCCcEEE-eeccccCCc
Q psy4258 35 KGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNN--------------LTSLNNSLRGLTDLNWLF-LNNNRLKSL 98 (245)
Q Consensus 35 ~~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~--------------~~~~~~~~~~~~~L~~L~-l~~~~l~~~ 98 (245)
..+++|+.|++++|.++.+|...-. ++|+.|+++++. ....|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 5578899999999999887643221 678888876653 224456677778888887 555544333
Q ss_pred cc------cccC--CCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCc
Q psy4258 99 EG------QLGT--LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 170 (245)
Q Consensus 99 ~~------~~~~--~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~ 170 (245)
+. .+.. ...|+.|++++|.+..+|. +..+++|+.|++++|.+..+|..+..+++|+.|++++|.++.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--
Confidence 21 0111 1358999999999999986 99999999999999999999999999999999999999999875
Q ss_pred cCCCCCCCCEEEccCCccccc--cccccCCCCccEEEcCCCcccccchh---hhcCCCcccEEEc
Q psy4258 171 EFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLD---DIRGLKRLRTVDL 230 (245)
Q Consensus 171 ~~~~~~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~l~l 230 (245)
.++.+++|+.|++++|.++.+ |..+..+++|+.|++++|.+++.++. .+..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 788999999999999999988 88999999999999999999986542 2345788888864
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.2e-17 Score=132.45 Aligned_cols=226 Identities=17% Similarity=0.188 Sum_probs=137.0
Q ss_pred CccccccEEeeCCCCCceecCCCCCCC-Ccccceeeccccccc--cccCCCCCCcccEEEecCCccccch-hhhcC----
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKG-TPALITLLLVNNNIT--HIHENAFPPTIRKLHVGFNNLTSLN-NSLRG---- 81 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~-~~~L~~l~l~~~~i~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~---- 81 (245)
...+++++|++.+ + +.......+.. +++|+.|++++|.+. ......+ +.+..+.+..+ .+| .+|..
T Consensus 22 ~~~~~l~~L~l~g-~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~-~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 22 EEANSITHLTLTG-K-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY-PNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHHHCSEEEEEE-E-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS-GGGCCEEECTT---EECTTTTEEEETT
T ss_pred hhhCceeEEEEec-c-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc-ccccccccccc---ccCHHHhcccccc
Confidence 3567788898887 2 32211112222 677999999999887 3232222 11233333333 222 33444
Q ss_pred ----CCCCcEEEeeccccCCccc-cccCCCCccEEEecccccccCCh-hhhcccccceeecccCc---------------
Q psy4258 82 ----LTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNR--------------- 140 (245)
Q Consensus 82 ----~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~--------------- 140 (245)
+.+|+.+++.+ .++.+++ .|.++++|+.+++..+.+..+++ .+..+.++..+......
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 56666666655 4554432 35555666666665555443322 12222223222221100
Q ss_pred ------------CCCch----------------------------hhhcCCCCCcEEecCCCccccccCccCCCCCCCCE
Q psy4258 141 ------------ITSLD----------------------------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180 (245)
Q Consensus 141 ------------~~~~~----------------------------~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~ 180 (245)
...++ .....+++|+++++.+|.++.++...|.++.+|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 00000 00112678999999988888888888988989999
Q ss_pred EEccCCcccccc-ccccCCCCcc-EEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCCCC
Q psy4258 181 ISLQNNQITSMN-SSLSGLTKLA-YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG 244 (245)
Q Consensus 181 L~l~~~~i~~~~-~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~~ 244 (245)
++++.+ +..++ .+|..+.+|+ .+.+.+ .++.+.+.+|.+|++|+.+++.+|.++.++...|.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 999887 66664 4678888898 899887 77777778888999999999988999888876653
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2.3e-15 Score=122.16 Aligned_cols=219 Identities=13% Similarity=0.181 Sum_probs=131.2
Q ss_pred cccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcCCCCCcEEEee
Q psy4258 14 ALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91 (245)
Q Consensus 14 ~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 91 (245)
+|+.+++.. ++..+...+|.++ +|+.+.+.+ .++.+...+|. .+|+.+++..|.+..++.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~--~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNE--GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCT--TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCC--CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 355555544 2555555555543 355555553 45555555554 45555555555555554222224555555554
Q ss_pred ccccCCcc-ccccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccc---
Q psy4258 92 NNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQIT--- 165 (245)
Q Consensus 92 ~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~--- 165 (245)
.+ ++.+. ..|.++++|+.+.+..+ +..++.. +.. .+|+.+.+. +.+..+ ...+..+.+|+.+.+.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 33 33332 23445556666666543 3333322 222 456666652 334444 346677788888888776554
Q ss_pred --cccCccCCCCCCCCEEEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCC
Q psy4258 166 --MVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 166 --~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
.+....|.++++|+.+.+.. .++.++ .++..|.+|+.+.+..+ ++.+...+|.+| +|+.+.+.+|.+..++...
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~ 364 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKV 364 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSS
T ss_pred ccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccc
Confidence 46667788888888888884 466653 46777888999988554 777667888888 8999999998888877654
Q ss_pred C
Q psy4258 243 E 243 (245)
Q Consensus 243 ~ 243 (245)
+
T Consensus 365 F 365 (401)
T 4fdw_A 365 W 365 (401)
T ss_dssp C
T ss_pred c
Confidence 4
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=2.7e-16 Score=115.02 Aligned_cols=128 Identities=23% Similarity=0.334 Sum_probs=110.6
Q ss_pred cEEEeeccccCCccccccCCCCccEEEecccccccCChh--hhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCC
Q psy4258 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFN 162 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~--~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~ 162 (245)
++++++++.++.+|..+.. .++.|++++|.+..++.. +..+++|+.|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6889999999988876644 899999999999877653 78899999999999999887 667888999999999999
Q ss_pred ccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccc
Q psy4258 163 QITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFL 215 (245)
Q Consensus 163 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~ 215 (245)
.++..++..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|++.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99988888888899999999999999965 667888899999999999988643
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.68 E-value=3.7e-15 Score=120.91 Aligned_cols=210 Identities=11% Similarity=0.165 Sum_probs=97.2
Q ss_pred ccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC-CcccEEEecCCccccch-hhhcCCCCCcEEEeec
Q psy4258 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNN 92 (245)
Q Consensus 15 L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~-~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~ 92 (245)
|+.+++.. .+..+...+|.+|++|+.+++.++.++.++..+|. .+|+.+.+..+ +..++ .+|..+.+|+.+.+..
T Consensus 159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 55555543 44555555555555555555555555555555444 45555555422 33333 4445555555555544
Q ss_pred cccCCccccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCC-----Cc-hhhhcCCCCCcEEecCCCccc
Q psy4258 93 NRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRIT-----SL-DGLLRGLTKLQVFNMDFNQIT 165 (245)
Q Consensus 93 ~~l~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~-----~~-~~~~~~~~~l~~L~l~~~~l~ 165 (245)
+ ++.+........+|+.+.+.. .+..+ ...+..|++|+.+.+.++... .+ +..+..+++|+.+++. +.++
T Consensus 236 ~-l~~I~~~aF~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~ 312 (401)
T 4fdw_A 236 N-VSTIGQEAFRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR 312 (401)
T ss_dssp T-CCEECTTTTTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC
T ss_pred C-ccCccccccccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE
Confidence 2 333332222224455555532 23333 223445555555555444332 12 2344445555555554 2344
Q ss_pred cccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCC-cccEEEccC
Q psy4258 166 MVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK-RLRTVDLSY 232 (245)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~l~l~~ 232 (245)
.+....|.++.+|+.+.+..+ ++.+ ..++..+ +|+.+.+.+|........++.+++ .+..+.+-.
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 444455555555555555433 3333 2334444 555555555544444444444442 344444443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.8e-17 Score=142.84 Aligned_cols=114 Identities=27% Similarity=0.293 Sum_probs=61.2
Q ss_pred chhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCC
Q psy4258 75 LNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKL 154 (245)
Q Consensus 75 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l 154 (245)
.+..+..+..|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..+..+++|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 34445555556666666655555555555555555555555555555555555555555555555555555555555555
Q ss_pred cEEecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 155 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
++|++++|.++.++. .++.+++|+.|++++|.+.
T Consensus 296 ~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCC
T ss_pred CEEECCCCCCCccCh-hhhcCCCccEEeCCCCccC
Confidence 555555555554432 3555555555555555555
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=5.3e-16 Score=113.52 Aligned_cols=126 Identities=23% Similarity=0.382 Sum_probs=110.9
Q ss_pred cEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCch-hhhcCCCCCcEEecCCCcc
Q psy4258 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 86 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~~~l 164 (245)
+.++++++.++.+|..+. +.++.|++++|.+..+|..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 578899999998887653 6899999999999989888999999999999999999876 4678899999999999999
Q ss_pred ccccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCcccc
Q psy4258 165 TMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~~ 213 (245)
+.+++..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99888889999999999999999998876 47788999999999998865
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=9.2e-17 Score=139.60 Aligned_cols=216 Identities=19% Similarity=0.204 Sum_probs=112.2
Q ss_pred cccccEEeeCCCCCceecCCCCCCCCccccee-----eccccccccccCCCCC--CcccEEEecCCccccchhhhcCCCC
Q psy4258 12 AVALNLIDLEPETGSHPLTSDDLKGTPALITL-----LLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTD 84 (245)
Q Consensus 12 ~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l-----~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~ 84 (245)
.+.++.|++.+ +.+.......+. ..+|..+ ++..+.+. +++..+. +.|+.|++++|.+..+|..+..+++
T Consensus 172 ~~~~~~l~L~~-n~~~~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFA-NGKDEANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CCccceEEeeC-CCCCcchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 35577888877 776654332221 2222222 22223322 2233333 7899999999999988877778999
Q ss_pred CcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcc
Q psy4258 85 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 164 (245)
Q Consensus 85 L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l 164 (245)
|++|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++.+|.+..+|..+..+++|+.|++++|.+
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence 99999999999999988999999999999999999888889999999999999999999988888899999999999998
Q ss_pred ccccCccCCCCCC-CCEEEccCCcccc-ccccccCCCCccEEEcCCC--------cccccchhhhcCCCcccEEEccCCC
Q psy4258 165 TMVRRDEFQNLHN-LDSISLQNNQITS-MNSSLSGLTKLAYLYLSHN--------QLTEFLLDDIRGLKRLRTVDLSYNK 234 (245)
Q Consensus 165 ~~~~~~~~~~~~~-L~~L~l~~~~i~~-~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~l~~~~~L~~l~l~~n~ 234 (245)
+..++..+..... ...+++.+|.+.. +| ..++.|+++.| .+.+..+..+..+..+....+++|-
T Consensus 329 ~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 329 EKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC-----------------------------------------C
T ss_pred CCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccc
Confidence 8766555543211 1235566776663 33 23455556555 2222222333444444555566665
Q ss_pred Cc
Q psy4258 235 IN 236 (245)
Q Consensus 235 l~ 236 (245)
+.
T Consensus 403 l~ 404 (727)
T 4b8c_D 403 LC 404 (727)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=2.9e-17 Score=139.96 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=125.8
Q ss_pred CCCcccceeeccccccccccCC---CCCCcccEEEecCCccc--cchhhhcCCCCCcEEEeec-----------cccCC-
Q psy4258 35 KGTPALITLLLVNNNITHIHEN---AFPPTIRKLHVGFNNLT--SLNNSLRGLTDLNWLFLNN-----------NRLKS- 97 (245)
Q Consensus 35 ~~~~~L~~l~l~~~~i~~~~~~---~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~-----------~~l~~- 97 (245)
..+++|+.|++++|.+++.... ...++|++|+++ +.+. .++..+..+++|++|++++ +.++.
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 3455666666666654332211 122566666666 2222 2233334566677777763 23331
Q ss_pred -ccccccCCCCccEEEeccccccc-CChhhhc-ccccceeecc----cCcCCC------chhhhcCCCCCcEEecCCCc-
Q psy4258 98 -LEGQLGTLSKLQLLVIEQNQLEA-LPSDIQL-FSQLGSLYAN----NNRITS------LDGLLRGLTKLQVFNMDFNQ- 163 (245)
Q Consensus 98 -~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~-~~~L~~l~l~----~~~~~~------~~~~~~~~~~l~~L~l~~~~- 163 (245)
+......+++|+.|++..+.+.. .+..+.. +++|+.|++. .+.+.+ ++..+..+++|+.|+++.|.
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 22223446777777776665552 2233333 7778888875 455655 33345567888888886543
Q ss_pred -cccccCccC-CCCCCCCEEEccCCcccc--ccccccCCCCccEEEcCCCcccccc-hhhhcCCCcccEEEccCCCCccc
Q psy4258 164 -ITMVRRDEF-QNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTEFL-LDDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 164 -l~~~~~~~~-~~~~~L~~L~l~~~~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
++......+ ..+++|+.|++++|.+++ ++..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|+++..
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 443222222 346789999999998874 4555678899999999999987653 33446789999999999998876
Q ss_pred cc
Q psy4258 239 GT 240 (245)
Q Consensus 239 ~~ 240 (245)
+.
T Consensus 529 ~~ 530 (592)
T 3ogk_B 529 GQ 530 (592)
T ss_dssp CT
T ss_pred HH
Confidence 53
No 126
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=1.4e-17 Score=141.91 Aligned_cols=201 Identities=16% Similarity=0.161 Sum_probs=105.9
Q ss_pred CCcccceeeccccccccccCC------CCCCcccEEEecCCccc-----cchhhhcCCCCCcEEEeeccccCCccccccC
Q psy4258 36 GTPALITLLLVNNNITHIHEN------AFPPTIRKLHVGFNNLT-----SLNNSLRGLTDLNWLFLNNNRLKSLEGQLGT 104 (245)
Q Consensus 36 ~~~~L~~l~l~~~~i~~~~~~------~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 104 (245)
.+++|+.|++++|.+++.... .-.++|++|++++|.+. .++..+.++++|++|++++|.+..++..+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 345566666665554332211 00145555555555443 2233334455555555555554444433443
Q ss_pred C---------------------------CCccEEEecccccccCChhhhcccccceeecccCcCCC--chhhhcCCCCCc
Q psy4258 105 L---------------------------SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS--LDGLLRGLTKLQ 155 (245)
Q Consensus 105 ~---------------------------~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~l~ 155 (245)
+ ++|+.+++.++....+|..+..+++|+.|++.+|.+.+ ++..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 4 44444444443333455556667778888887777543 223456677777
Q ss_pred EEecCCCcccc-ccCccCCCCCCCCEEEccC-----------Ccccc--ccccccCCCCccEEEcCCCcccccchhhhcC
Q psy4258 156 VFNMDFNQITM-VRRDEFQNLHNLDSISLQN-----------NQITS--MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221 (245)
Q Consensus 156 ~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~-----------~~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 221 (245)
+|++.. .+.. ..+.....+++|+.|++.+ +.++. +......+++|+.|++..+.+++.....++.
T Consensus 322 ~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 777763 2322 1122234456677777773 34442 2222344677777777666666655555544
Q ss_pred -CCcccEEEcc----CCCCcc
Q psy4258 222 -LKRLRTVDLS----YNKINK 237 (245)
Q Consensus 222 -~~~L~~l~l~----~n~l~~ 237 (245)
+++|+.|+++ .|.++.
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSS
T ss_pred hCCCCcEEEEeecCCCccccC
Confidence 6667777764 445544
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=2.3e-16 Score=110.66 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=72.4
Q ss_pred CcccEEEecCCccc--cchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEeccccccc-CChhhhcccccceeec
Q psy4258 60 PTIRKLHVGFNNLT--SLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYA 136 (245)
Q Consensus 60 ~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~~~~~L~~l~l 136 (245)
+++++|++++|.+. .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 55666666666665 5566566667777777777766665 555666666666666666654 4444555666666666
Q ss_pred ccCcCCCch--hhhcCCCCCcEEecCCCccccccC---ccCCCCCCCCEEEc
Q psy4258 137 NNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRR---DEFQNLHNLDSISL 183 (245)
Q Consensus 137 ~~~~~~~~~--~~~~~~~~l~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l 183 (245)
++|.+.+++ ..+..++++++|++++|.++..++ ..+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 666665543 445555555555555555554433 23444455555544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.6e-16 Score=111.53 Aligned_cols=123 Identities=23% Similarity=0.238 Sum_probs=65.8
Q ss_pred ccEEEecccccc--cCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccC
Q psy4258 108 LQLLVIEQNQLE--ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185 (245)
Q Consensus 108 L~~l~l~~~~l~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 185 (245)
++.+++++|.+. .+|..+..+++|+.|++++|.+.++ ..+..++++++|++++|.++...+..+..+++|+.|++++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~ 97 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC
Confidence 344444444333 3333334444444444444444444 3344455555555555555543333444455566666666
Q ss_pred Ccccccc--ccccCCCCccEEEcCCCcccccch---hhhcCCCcccEEEcc
Q psy4258 186 NQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL---DDIRGLKRLRTVDLS 231 (245)
Q Consensus 186 ~~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~l~l~ 231 (245)
|.+++++ ..+..+++|+.|++++|.+++..+ ..+..+++|+.|+++
T Consensus 98 N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 98 NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp SCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666543 555666667777777776666544 456666777776664
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=1.8e-16 Score=114.32 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=65.2
Q ss_pred cCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEec
Q psy4258 80 RGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159 (245)
Q Consensus 80 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l 159 (245)
..+.+|++|++++|.+..++......++|+.|++++|.+. ++ ..+..++++++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~-----------------------~~-~~l~~l~~L~~L~L 71 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-----------------------KL-DGFPLLRRLKTLLV 71 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-----------------------EE-CCCCCCSSCCEEEC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCC-----------------------cc-cccccCCCCCEEEC
Confidence 4455666666666665554332222235555555555444 33 23444455555555
Q ss_pred CCCccccccCccCCCCCCCCEEEccCCccccccc--cccCCCCccEEEcCCCcccccchh---hhcCCCcccEEEccCCC
Q psy4258 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLD---DIRGLKRLRTVDLSYNK 234 (245)
Q Consensus 160 ~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~---~l~~~~~L~~l~l~~n~ 234 (245)
++|.++..++..+..+++|+.|++++|.+..+|. .+..+++|+.|++++|.+...... .+..+++|+.+++++|.
T Consensus 72 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5555554443333444555555555555554443 444555555555555555442211 24455555555555554
Q ss_pred Cc
Q psy4258 235 IN 236 (245)
Q Consensus 235 l~ 236 (245)
..
T Consensus 152 ~~ 153 (176)
T 1a9n_A 152 LK 153 (176)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.6e-15 Score=110.94 Aligned_cols=126 Identities=25% Similarity=0.405 Sum_probs=111.8
Q ss_pred ccEEEecCCccccchhhhcCCCCCcEEEeeccccCCcccc--ccCCCCccEEEecccccccC-Chhhhcccccceeeccc
Q psy4258 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ--LGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANN 138 (245)
Q Consensus 62 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~ 138 (245)
-+.++++++.++.+|..+. .++++|++++|.+..++.. +..+++|+.|++++|.+..+ |..+..+++|+.|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3689999999999987554 3899999999999988753 88899999999999999876 66788999999999999
Q ss_pred CcCCCchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 139 NRITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 139 ~~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
|++..++. .+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 99998764 4778999999999999999888888999999999999999887
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=4.6e-15 Score=108.51 Aligned_cols=125 Identities=21% Similarity=0.386 Sum_probs=111.4
Q ss_pred cEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCCh-hhhcccccceeecccCcC
Q psy4258 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS-DIQLFSQLGSLYANNNRI 141 (245)
Q Consensus 63 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~~ 141 (245)
+.++++++.++.+|..+ ..++++|++++|.++.+|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57889999999988654 368999999999999999899999999999999999997764 588899999999999999
Q ss_pred CCchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccc
Q psy4258 142 TSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 142 ~~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~ 189 (245)
..++. .+..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 98764 6788999999999999999888888989999999999999876
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=3.2e-16 Score=113.05 Aligned_cols=129 Identities=17% Similarity=0.254 Sum_probs=73.1
Q ss_pred CcccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhh-hcccccceeeccc
Q psy4258 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANN 138 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~-~~~~~L~~l~l~~ 138 (245)
.+|++|++++|.+..++......++|++|++++|.++.+ ..+..+++|++|++++|.+..+|+.+ ..+++|+.|++++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 455666666666555543223333677777777776665 45666667777777777666555443 5666666666666
Q ss_pred CcCCCchh--hhcCCCCCcEEecCCCccccccCc---cCCCCCCCCEEEccCCccc
Q psy4258 139 NRITSLDG--LLRGLTKLQVFNMDFNQITMVRRD---EFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 139 ~~~~~~~~--~~~~~~~l~~L~l~~~~l~~~~~~---~~~~~~~L~~L~l~~~~i~ 189 (245)
|.+.++|. .+..+++++.|++++|.+...+.. .+..+++|+.|+++.|...
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66665554 455555566666665555443321 2344444555554444433
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.61 E-value=1e-14 Score=105.24 Aligned_cols=131 Identities=26% Similarity=0.353 Sum_probs=107.2
Q ss_pred CCcEEEeeccccCCccccccCCCCccEEEecccccccCChh-hhcccccceeecccCcCCCchh-hhcCCCCCcEEecCC
Q psy4258 84 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDF 161 (245)
Q Consensus 84 ~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~ 161 (245)
..+.++++++.+..+|..+. ++++.|++++|.+..++.. +..+++|+.|++++|.+..++. .+..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 34678888888888875543 6899999999988877654 5788899999999999888764 457788999999999
Q ss_pred CccccccCccCCCCCCCCEEEccCCcccccccc-ccCCCCccEEEcCCCcccccch
Q psy4258 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLL 216 (245)
Q Consensus 162 ~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~n~l~~~~~ 216 (245)
|.++..++..+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999888777788888999999999999988765 4678899999999998887543
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=3.6e-17 Score=120.33 Aligned_cols=127 Identities=22% Similarity=0.339 Sum_probs=82.2
Q ss_pred cccEEEecCC--ccccchhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEecccccccCChhhhcccccceeeccc
Q psy4258 61 TIRKLHVGFN--NLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 138 (245)
Q Consensus 61 ~L~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~ 138 (245)
.++...+.+. .+..+|..+..+++|++|++++|.+..++ .+..+++|++|++++|.+..+|..+..+++|+.|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 3444444443 45566667777888888888888877776 66667777788887777777776666667777777777
Q ss_pred CcCCCchhhhcCCCCCcEEecCCCccccccC-ccCCCCCCCCEEEccCCccc
Q psy4258 139 NRITSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~~~i~ 189 (245)
|.+.++| .+..+++++.|++++|.++..+. ..+..+++|+.|++++|.+.
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 7777665 35555666666666666554332 23445555555555555554
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=8.8e-17 Score=118.26 Aligned_cols=138 Identities=24% Similarity=0.348 Sum_probs=85.2
Q ss_pred cCCccccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCccccccCccCCC
Q psy4258 95 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174 (245)
Q Consensus 95 l~~~~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~ 174 (245)
++.++..+..+++|++|++++|.+..+| .+..+++|+.|++++|.+..+|..+..++++++|++++|.++.++ .+..
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~--~~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS--GIEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH--HHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC--cccc
Confidence 3344445666666777777666666665 666666677777776666666655555566677777666666543 3555
Q ss_pred CCCCCEEEccCCccccccc--cccCCCCccEEEcCCCcccccchh----------hhcCCCcccEEEccCCCCcc
Q psy4258 175 LHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLD----------DIRGLKRLRTVDLSYNKINK 237 (245)
Q Consensus 175 ~~~L~~L~l~~~~i~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~----------~l~~~~~L~~l~l~~n~l~~ 237 (245)
+++|+.|++++|.+..++. .+..+++|+.|++++|.+.+..|. .+..+++|+.|+ ++.++.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 6667777777766665543 455666677777777766554332 255666666665 555543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=4.2e-14 Score=101.99 Aligned_cols=127 Identities=28% Similarity=0.428 Sum_probs=102.8
Q ss_pred ccEEEecCCccccchhhhcCCCCCcEEEeeccccCCccc-cccCCCCccEEEecccccccCChh-hhcccccceeecccC
Q psy4258 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG-QLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNN 139 (245)
Q Consensus 62 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~l~l~~~~l~~~~~~-~~~~~~L~~l~l~~~ 139 (245)
.+.+++++++++.+|..+ .+++++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 467888888888887544 3688999999998887765 357788999999999988877654 578889999999999
Q ss_pred cCCCchh-hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccc
Q psy4258 140 RITSLDG-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190 (245)
Q Consensus 140 ~~~~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 190 (245)
.+..++. .+..+++|++|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8888765 45678889999999998888877777888889999999988774
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=1e-16 Score=136.65 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=21.5
Q ss_pred CCCccEEEcCCCcccccchhhhc-CCCcccEEEcc
Q psy4258 198 LTKLAYLYLSHNQLTEFLLDDIR-GLKRLRTVDLS 231 (245)
Q Consensus 198 ~~~L~~L~l~~n~l~~~~~~~l~-~~~~L~~l~l~ 231 (245)
+++|+.|.+..+.+++.....+. .+++|+.|+++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 56666666666666655444444 46777777777
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.55 E-value=5.9e-16 Score=131.89 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=53.5
Q ss_pred ccccccEEeeCCCCCceecCC-CCCCCCcccceeeccccccccccCCC------CCCcccEEEecCCc--cc--cchhhh
Q psy4258 11 HAVALNLIDLEPETGSHPLTS-DDLKGTPALITLLLVNNNITHIHENA------FPPTIRKLHVGFNN--LT--SLNNSL 79 (245)
Q Consensus 11 ~~~~L~~l~l~~~~~l~~~~~-~~~~~~~~L~~l~l~~~~i~~~~~~~------~~~~L~~L~l~~~~--~~--~~~~~~ 79 (245)
.+++|++|++.+|..+..... ..+..+++|+.|++++|.+++..... ..++|++|++++|. +. .+...+
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 207 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV 207 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence 467777777777324443211 11235677777777777655433211 12577777777765 21 222223
Q ss_pred cCCCCCcEEEeecc-ccCCccccccCCCCccEEE
Q psy4258 80 RGLTDLNWLFLNNN-RLKSLEGQLGTLSKLQLLV 112 (245)
Q Consensus 80 ~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~l~ 112 (245)
..+++|++|++++| .+..++..+..+++|+.++
T Consensus 208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 241 (594)
T 2p1m_B 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241 (594)
T ss_dssp HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEE
T ss_pred HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcc
Confidence 44677777777666 2223333334444444444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.6e-13 Score=98.28 Aligned_cols=105 Identities=28% Similarity=0.425 Sum_probs=77.4
Q ss_pred ccEEEecccccccCChhhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCC
Q psy4258 108 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186 (245)
Q Consensus 108 L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 186 (245)
.+.++++++.+..+|..+ .++++.|++++|.+..+ +..+..+++|++|++++|.++.+++..+..+++|+.|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 467777777777777654 26777888888877776 455667778888888888877777767777778888888888
Q ss_pred ccccccc-cccCCCCccEEEcCCCccccc
Q psy4258 187 QITSMNS-SLSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 187 ~i~~~~~-~~~~~~~L~~L~l~~n~l~~~ 214 (245)
.++.++. .+..+++|+.|++++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8777765 466777888888888877653
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=1.9e-13 Score=98.25 Aligned_cols=104 Identities=27% Similarity=0.453 Sum_probs=76.1
Q ss_pred cEEEecccccccCChhhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCc
Q psy4258 109 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187 (245)
Q Consensus 109 ~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~ 187 (245)
+.++++++.+..+|..+. ++|+.|++++|.+..+ |..+..+++|+.|++++|.++.+++..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776543 6777888888877776 4556677778888888887777766667777778888888887
Q ss_pred ccccccc-ccCCCCccEEEcCCCccccc
Q psy4258 188 ITSMNSS-LSGLTKLAYLYLSHNQLTEF 214 (245)
Q Consensus 188 i~~~~~~-~~~~~~L~~L~l~~n~l~~~ 214 (245)
+..++.. +..+++|+.|++++|++...
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 7777654 66777788888888777653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.9e-12 Score=92.66 Aligned_cols=105 Identities=28% Similarity=0.359 Sum_probs=85.8
Q ss_pred CCcEEEeeccccCCccccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCchh-hhcCCCCCcEEecCC
Q psy4258 84 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDG-LLRGLTKLQVFNMDF 161 (245)
Q Consensus 84 ~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~l~~L~l~~ 161 (245)
..+.++++++.++.+|..+. +.++.|++++|.+..+ +..+..+++|+.|++++|++..++. .+..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35678888888888886653 7888999999988877 4457888899999999998888765 356788899999999
Q ss_pred CccccccCccCCCCCCCCEEEccCCcccc
Q psy4258 162 NQITMVRRDEFQNLHNLDSISLQNNQITS 190 (245)
Q Consensus 162 ~~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 190 (245)
|.++.+++..+..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 98888877778888889999999887763
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2.6e-12 Score=92.23 Aligned_cols=106 Identities=27% Similarity=0.375 Sum_probs=89.7
Q ss_pred CcEEEeeccccCCccccccCCCCccEEEecccccccC-ChhhhcccccceeecccCcCCCchhh-hcCCCCCcEEecCCC
Q psy4258 85 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQVFNMDFN 162 (245)
Q Consensus 85 L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~l~~L~l~~~ 162 (245)
-+.++++++.+..+|..+. +.|+.|++++|.+..+ |..+..+++|+.|++++|++..+|.. +..+++|++|++++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3688999999988887664 7899999999998877 45678899999999999999988764 567899999999999
Q ss_pred ccccccCccCCCCCCCCEEEccCCcccccc
Q psy4258 163 QITMVRRDEFQNLHNLDSISLQNNQITSMN 192 (245)
Q Consensus 163 ~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 192 (245)
.++.+++..+..+++|+.|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 998887777888999999999999887544
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=9.2e-14 Score=111.65 Aligned_cols=177 Identities=18% Similarity=0.171 Sum_probs=118.7
Q ss_pred CcccEEEecCCccccc-----hhhhc-CCCCCcEEEeeccccCCc--cccccCCCCccEEEecccccccC-----Chhh-
Q psy4258 60 PTIRKLHVGFNNLTSL-----NNSLR-GLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEAL-----PSDI- 125 (245)
Q Consensus 60 ~~L~~L~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~l~l~~~~l~~~-----~~~~- 125 (245)
+.++.|++++|.++.. ...+. ...+|++|++++|.+... ......+++|+.|++++|.+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 6789999999988743 23333 336899999999987632 22223346788999999887632 1122
Q ss_pred hcccccceeecccCcCCC-----chhhhcCCCCCcEEecCCCcccccc----CccCCCCCCCCEEEccCCcccc-----c
Q psy4258 126 QLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQITMVR----RDEFQNLHNLDSISLQNNQITS-----M 191 (245)
Q Consensus 126 ~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~~~l~~~~----~~~~~~~~~L~~L~l~~~~i~~-----~ 191 (245)
...++|+.|++++|.+.+ ++..+...++|++|++++|.++... ...+...+.|+.|++++|.+++ +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 235679999999998865 4455677888999999999886533 2345566789999999998874 3
Q ss_pred cccccCCCCccEEEcCCCcccccchhhhcCCC--c---ccEEE--ccCCCCc
Q psy4258 192 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK--R---LRTVD--LSYNKIN 236 (245)
Q Consensus 192 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~--~---L~~l~--l~~n~l~ 236 (245)
...+...++|+.|+|++|.+++.....+.... . ++.+. +.++.++
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 34455678899999999998876665554332 1 55555 5555554
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=6.1e-13 Score=106.88 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=119.9
Q ss_pred CCCCcEEEeeccccCCc-----cccccC-CCCccEEEeccccccc--CChhhhcccccceeecccCcCCCc-----hhhh
Q psy4258 82 LTDLNWLFLNNNRLKSL-----EGQLGT-LSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYANNNRITSL-----DGLL 148 (245)
Q Consensus 82 ~~~L~~L~l~~~~l~~~-----~~~~~~-~~~L~~l~l~~~~l~~--~~~~~~~~~~L~~l~l~~~~~~~~-----~~~~ 148 (245)
.+.+++|++++|.+... ...+.. .+.|+.|++++|.+.. +..-...+++|+.|++++|.+.+. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 36799999999998742 233333 3799999999998762 222233467899999999998763 2333
Q ss_pred -cCCCCCcEEecCCCccccccC----ccCCCCCCCCEEEccCCcccc-----ccccccCCCCccEEEcCCCcccccch--
Q psy4258 149 -RGLTKLQVFNMDFNQITMVRR----DEFQNLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEFLL-- 216 (245)
Q Consensus 149 -~~~~~l~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~-- 216 (245)
...+.+++|++++|.++.... ..+...++|+.|++++|.+.+ +...+...++|+.|+|++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 356899999999999875332 234567889999999999884 34566778899999999999987543
Q ss_pred --hhhcCCCcccEEEccCCCCccccc
Q psy4258 217 --DDIRGLKRLRTVDLSYNKINKFGT 240 (245)
Q Consensus 217 --~~l~~~~~L~~l~l~~n~l~~~~~ 240 (245)
.++..++.|+.|++++|.|+..+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 345567899999999999987654
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.1e-10 Score=94.65 Aligned_cols=213 Identities=16% Similarity=0.206 Sum_probs=123.4
Q ss_pred CccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCCccccchhhhcCCCCCcE
Q psy4258 10 GHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLNW 87 (245)
Q Consensus 10 ~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 87 (245)
.+|++|+.+++.. .+..+...+|.++.+|+.+++..+ ++.+...+|. ..|+.+.+..+. ..+...+....+|+.
T Consensus 159 ~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 159 ATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKN 234 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCE
T ss_pred cccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhcccCCCce
Confidence 3566677777655 345566666666677777766554 5555555554 445555444332 122233334456666
Q ss_pred EEeeccccCCc-cccccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCchhhhcCCCCCcEEecCCCcccc
Q psy4258 88 LFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166 (245)
Q Consensus 88 L~l~~~~l~~~-~~~~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~ 166 (245)
+.+.... ..+ ...+..+..++.+.+..+....-...+..+..++.+......+.+ ..+..+.+|+.+.+..+ ++.
T Consensus 235 i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 235 IIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp EEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCE
T ss_pred EEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--ccccccccccccccccc-cce
Confidence 6654332 222 223555666777766655333223344555566655554433221 24556677777777543 566
Q ss_pred ccCccCCCCCCCCEEEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccC
Q psy4258 167 VRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232 (245)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~ 232 (245)
+....|.++.+|+.+++..+ ++.+. .++..|.+|+.+.+..+ ++.+...+|.+|.+|+.+++..
T Consensus 311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 66667777778888877643 55553 46677778888877665 6666667777888888777753
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=2.3e-11 Score=96.84 Aligned_cols=103 Identities=25% Similarity=0.290 Sum_probs=73.6
Q ss_pred EEEeccc-ccccCChhhhcccccceeeccc-CcCCCch-hhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCC
Q psy4258 110 LLVIEQN-QLEALPSDIQLFSQLGSLYANN-NRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186 (245)
Q Consensus 110 ~l~l~~~-~l~~~~~~~~~~~~L~~l~l~~-~~~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~ 186 (245)
.++.+++ .+..+|. +..+++|+.|++++ |.+..++ ..+..+++|+.|++++|.++.+++..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4566666 6777777 77777778888875 7777765 45667777888888877777777777777777888888887
Q ss_pred ccccccccccCCCCccEEEcCCCcccc
Q psy4258 187 QITSMNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 187 ~i~~~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
.+..+|........|+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 777776544433347777877777764
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=1.1e-09 Score=88.65 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=59.3
Q ss_pred hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCccccc-cccccCCCCccEEEcCCCcccccchhhhcCCCcc
Q psy4258 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225 (245)
Q Consensus 147 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 225 (245)
.+..+..|+.+.+. +.++.++...|.++.+|+.+.+..+ ++.+ ..++..|.+|+.+.+..+ ++.+...+|.+|.+|
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL 359 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC
Confidence 34455666666664 3455666677778888888888754 5554 346778888888888644 666667788888888
Q ss_pred cEEEccCCC
Q psy4258 226 RTVDLSYNK 234 (245)
Q Consensus 226 ~~l~l~~n~ 234 (245)
+.+++.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 888887754
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.25 E-value=1.3e-09 Score=88.35 Aligned_cols=128 Identities=18% Similarity=0.237 Sum_probs=81.7
Q ss_pred ccCCCCccEEEecccccccCChhhhcccccceeecccCcCCCch-hhhcCCCCCcEEecCCCccccccCccCCCCCCCCE
Q psy4258 102 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180 (245)
Q Consensus 102 ~~~~~~L~~l~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~ 180 (245)
|.++..|+.+.+.......-...+..+.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ ++.+....|.+|.+|+.
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 4455666666665443222233456677777777753 344454 46677889999999764 77777788999999999
Q ss_pred EEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCC
Q psy4258 181 ISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235 (245)
Q Consensus 181 L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l 235 (245)
+.+..+ ++.+. .++.+|.+|+.+++.++.... .++..+..|+.+.+..+.+
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 999764 66663 578899999999998875332 4567778888887765543
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.25 E-value=4.7e-10 Score=90.89 Aligned_cols=226 Identities=15% Similarity=0.246 Sum_probs=135.5
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecC------------Cc---
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGF------------NN--- 71 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~------------~~--- 71 (245)
+.+|.+|++++|.. .++.+...+|.+|.+|+.+++.++ ++.++..+|. .+|+.+.+.. +.
T Consensus 67 F~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccc
Confidence 34788899999976 588888888999999999998754 6666665554 3444433321 11
Q ss_pred ------cccc-hhhhcCCCCCcEEEeeccccCCcc-ccccCCCCccEEEeccccccc-----------------------
Q psy4258 72 ------LTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA----------------------- 120 (245)
Q Consensus 72 ------~~~~-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~l~l~~~~l~~----------------------- 120 (245)
...+ ..+|..+.+|+.+.+.++. ..+. ..|.++.+|+.+.+..+ +..
T Consensus 144 ~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 144 ITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 1112 2567778888888886543 2232 34555566666655433 110
Q ss_pred CChhhhcccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCcc--------------------ccccCccCCCCCCCC
Q psy4258 121 LPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQI--------------------TMVRRDEFQNLHNLD 179 (245)
Q Consensus 121 ~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l--------------------~~~~~~~~~~~~~L~ 179 (245)
+........+|+.+.+.... ..+ ...+..+..++.+.+..+.. ..++...+..+.+|+
T Consensus 222 i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccc
Confidence 01111223345555543321 111 12233344444444433211 112334566777888
Q ss_pred EEEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcccEEEccCCCCcccccCCC
Q psy4258 180 SISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 180 ~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~~ 243 (245)
.+.+..+ ++.++ .++..+.+|+.+++..+ ++.+...+|.+|.+|+.+++..+ ++.++...|
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 8887654 55553 46788999999999654 77777789999999999999766 888876654
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.23 E-value=2.6e-09 Score=86.05 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=63.1
Q ss_pred hhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccccc-ccccCCCCccEEEcCCCcccccchhhhcCCCcc
Q psy4258 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRL 225 (245)
Q Consensus 147 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L 225 (245)
.+..+.+++.+.+.. .+..+....|.++.+|+.+.+.++.++.++ ..+..|.+|+.+.+..+ ++.+...+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 344455666666643 355555667777788888888777777664 46777888888888643 666666778888888
Q ss_pred cEEEccCCCCcccccCCC
Q psy4258 226 RTVDLSYNKINKFGTRNE 243 (245)
Q Consensus 226 ~~l~l~~n~l~~~~~~~~ 243 (245)
+.+.+..+ ++.++...|
T Consensus 336 ~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 336 STISYPKS-ITLIESGAF 352 (379)
T ss_dssp CCCCCCTT-CCEECTTTT
T ss_pred CEEEECCc-cCEEchhHh
Confidence 88777543 666665443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.19 E-value=4.1e-09 Score=84.85 Aligned_cols=112 Identities=16% Similarity=0.234 Sum_probs=60.4
Q ss_pred cccccceeecccCcCCCc-hhhhcCCCCCcEEecCCCccccccCccCCCCCCCCEEEccCCcccccc-ccccCCCCccEE
Q psy4258 127 LFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYL 204 (245)
Q Consensus 127 ~~~~L~~l~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L 204 (245)
.+..++.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+....+..+.+++.+.+..+ +..++ ..+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3445555554333 2222 233445566666666543 44555556666666666666543 33332 345566666666
Q ss_pred EcCCCcccccchhhhcCCCcccEEEccCCCCcccccCC
Q psy4258 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRN 242 (245)
Q Consensus 205 ~l~~n~l~~~~~~~l~~~~~L~~l~l~~n~l~~~~~~~ 242 (245)
.+.++.++.+...+|.+|.+|+.+.+.. .++.++...
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~a 328 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYA 328 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHH
Confidence 6666666665556666666666666643 255555443
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.6e-10 Score=92.05 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=88.3
Q ss_pred cEEEeecc-ccCCccccccCCCCccEEEecc-cccccCCh-hhhcccccceeecccCcCCCch-hhhcCCCCCcEEecCC
Q psy4258 86 NWLFLNNN-RLKSLEGQLGTLSKLQLLVIEQ-NQLEALPS-DIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 161 (245)
Q Consensus 86 ~~L~l~~~-~l~~~~~~~~~~~~L~~l~l~~-~~l~~~~~-~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~l~~L~l~~ 161 (245)
..++.+++ .+..+|. +..+++|+.|++++ |.+..+++ .+..+++|+.|++++|.+..++ ..+..+++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45688887 8999998 88899999999996 99987764 5888999999999999999875 4678899999999999
Q ss_pred CccccccCccCCCCCCCCEEEccCCcccc
Q psy4258 162 NQITMVRRDEFQNLHNLDSISLQNNQITS 190 (245)
Q Consensus 162 ~~l~~~~~~~~~~~~~L~~L~l~~~~i~~ 190 (245)
|.++.+++..+..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999988877777665 9999999998873
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.99 E-value=1.4e-09 Score=86.90 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=87.9
Q ss_pred chhhhcCCCCCcEEEeeccccCCccccccCCCCccEEEeccccccc-CChhhh--cccccceeeccc--Cc------CCC
Q psy4258 75 LNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQ--LFSQLGSLYANN--NR------ITS 143 (245)
Q Consensus 75 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~~~--~~~~L~~l~l~~--~~------~~~ 143 (245)
+...+..+++|+.|.++++.-..++. + .+++|+.|.+..+.+.. ....+. .+++|+.|.++. +. +.+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 33445666777777776663122332 2 25677777776665541 111222 566777776642 11 112
Q ss_pred chhhhc--CCCCCcEEecCCCccccccCcc---CCCCCCCCEEEccCCcccc-----ccccccCCCCccEEEcCCCcccc
Q psy4258 144 LDGLLR--GLTKLQVFNMDFNQITMVRRDE---FQNLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTE 213 (245)
Q Consensus 144 ~~~~~~--~~~~l~~L~l~~~~l~~~~~~~---~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~n~l~~ 213 (245)
+...+. .+++|++|++.+|.+....... .+.++.|+.|+++.|.+.+ ++..+..+++|+.|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 222222 4678888888777765321111 1346778888888887774 33344556788888888887776
Q ss_pred cchhhhcC-CCcccEEEccCCC
Q psy4258 214 FLLDDIRG-LKRLRTVDLSYNK 234 (245)
Q Consensus 214 ~~~~~l~~-~~~L~~l~l~~n~ 234 (245)
.....+.. + ...++++++.
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 55444442 2 3456676655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=2.4e-09 Score=85.48 Aligned_cols=177 Identities=15% Similarity=0.213 Sum_probs=118.2
Q ss_pred CcccEEEecCCccc---------cchhhhcCCCCCcEEEeeccccC----------CccccccCCCCccEEEeccccccc
Q psy4258 60 PTIRKLHVGFNNLT---------SLNNSLRGLTDLNWLFLNNNRLK----------SLEGQLGTLSKLQLLVIEQNQLEA 120 (245)
Q Consensus 60 ~~L~~L~l~~~~~~---------~~~~~~~~~~~L~~L~l~~~~l~----------~~~~~~~~~~~L~~l~l~~~~l~~ 120 (245)
..++.|.++.+.+. .+..+..++++|+.|.+.+.... .+...+..+|+|+.|.+.++.-..
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 35677777755432 12344556789999988654321 244556678999999998873223
Q ss_pred CChhhhcccccceeecccCcCCCch-hhh--cCCCCCcEEecCCC--c------cccccCccC--CCCCCCCEEEccCCc
Q psy4258 121 LPSDIQLFSQLGSLYANNNRITSLD-GLL--RGLTKLQVFNMDFN--Q------ITMVRRDEF--QNLHNLDSISLQNNQ 187 (245)
Q Consensus 121 ~~~~~~~~~~L~~l~l~~~~~~~~~-~~~--~~~~~l~~L~l~~~--~------l~~~~~~~~--~~~~~L~~L~l~~~~ 187 (245)
++. + .+++|+.|++..+.+..-. ..+ ..+++|++|+++.+ . +..+. ..+ ..+++|+.|++.+|.
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~-~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR-PLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG-GGSCTTTCTTCCEEEEESCT
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH-HHHhcCCCCCcCEEeCCCCC
Confidence 443 3 3789999999988776421 222 36899999998532 1 11111 122 357899999999998
Q ss_pred ccc-ccccc---cCCCCccEEEcCCCcccccchhhh----cCCCcccEEEccCCCCcccc
Q psy4258 188 ITS-MNSSL---SGLTKLAYLYLSHNQLTEFLLDDI----RGLKRLRTVDLSYNKINKFG 239 (245)
Q Consensus 188 i~~-~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l----~~~~~L~~l~l~~n~l~~~~ 239 (245)
+.+ .+..+ ..+++|+.|+|+.|.+.+.....+ ..+++|+.|++++|.+++..
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 873 22222 247899999999999988644443 44689999999999988654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=4.8e-09 Score=75.85 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred hcccccceeecccC-cCCC-----chhhhcCCCCCcEEecCCCccccccC----ccCCCCCCCCEEEccCCcccc-----
Q psy4258 126 QLFSQLGSLYANNN-RITS-----LDGLLRGLTKLQVFNMDFNQITMVRR----DEFQNLHNLDSISLQNNQITS----- 190 (245)
Q Consensus 126 ~~~~~L~~l~l~~~-~~~~-----~~~~~~~~~~l~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~~~i~~----- 190 (245)
...++|++|++++| .+.+ +...+...+++++|++++|.+..... ..+...+.|+.|++++|.+.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 33445555555555 4442 23344445566666666665543211 122333456666666666653
Q ss_pred ccccccCCCCccEEEc--CCCcccccch----hhhcCCCcccEEEccCCCCccc
Q psy4258 191 MNSSLSGLTKLAYLYL--SHNQLTEFLL----DDIRGLKRLRTVDLSYNKINKF 238 (245)
Q Consensus 191 ~~~~~~~~~~L~~L~l--~~n~l~~~~~----~~l~~~~~L~~l~l~~n~l~~~ 238 (245)
+...+...+.|+.|++ ++|.+..... ..+...+.|+.|++++|.++..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3344555666777777 6666665432 3344456677777777766543
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.68 E-value=1.5e-08 Score=73.23 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=42.8
Q ss_pred ccCCCCccEEEecccccc-----cCChhhhcccccceeecccCcCCC-----chhhhcCCCCCcEEec--CCCccccccC
Q psy4258 102 LGTLSKLQLLVIEQNQLE-----ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNM--DFNQITMVRR 169 (245)
Q Consensus 102 ~~~~~~L~~l~l~~~~l~-----~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l--~~~~l~~~~~ 169 (245)
+...+.|++|++++|.+. .+...+...++|++|++++|.+.+ +...+...+.|++|++ ++|.+.....
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 333444555555544443 122233444555555665555553 2344455556666666 5555543211
Q ss_pred ----ccCCCCCCCCEEEccCCccc
Q psy4258 170 ----DEFQNLHNLDSISLQNNQIT 189 (245)
Q Consensus 170 ----~~~~~~~~L~~L~l~~~~i~ 189 (245)
..+...+.|+.|++++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 22333355666666666554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.42 E-value=1.1e-07 Score=67.39 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=50.0
Q ss_pred CCCcEEecCCCccccccCccCCCCCCCCEEEccCCc-cccc-cccccC----CCCccEEEcCCC-cccccchhhhcCCCc
Q psy4258 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ-ITSM-NSSLSG----LTKLAYLYLSHN-QLTEFLLDDIRGLKR 224 (245)
Q Consensus 152 ~~l~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~-i~~~-~~~~~~----~~~L~~L~l~~n-~l~~~~~~~l~~~~~ 224 (245)
..|++|++++|.++......+..+++|+.|++++|. +++- -..+.. +++|+.|++++| .+++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666766666655544555666667777776664 4421 122222 235677777776 366655556666677
Q ss_pred ccEEEccCCC-Ccc
Q psy4258 225 LRTVDLSYNK-INK 237 (245)
Q Consensus 225 L~~l~l~~n~-l~~ 237 (245)
|+.|++++|. +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 7777776663 443
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=2.6e-07 Score=70.32 Aligned_cols=80 Identities=23% Similarity=0.316 Sum_probs=59.7
Q ss_pred cCCCCCcEEecCCCccccccC--ccCCCCCCCCEEEccCCccccccccccCCC--CccEEEcCCCcccccch-------h
Q psy4258 149 RGLTKLQVFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSGLT--KLAYLYLSHNQLTEFLL-------D 217 (245)
Q Consensus 149 ~~~~~l~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~--~L~~L~l~~n~l~~~~~-------~ 217 (245)
..+++|++|++++|.++.+.. ..+..+++|+.|+|++|.+.++ ..+..+. +|+.|+|++|++.+..+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 457889999999998887542 4455788999999999999876 2233344 89999999999886433 3
Q ss_pred hhcCCCcccEEE
Q psy4258 218 DIRGLKRLRTVD 229 (245)
Q Consensus 218 ~l~~~~~L~~l~ 229 (245)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 466788888885
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=6.7e-07 Score=63.41 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=34.1
Q ss_pred ccceeeccccccccccCCCC--CCcccEEEecCCc-cccch-hhhcCC----CCCcEEEeeccc-cCCc-cccccCCCCc
Q psy4258 39 ALITLLLVNNNITHIHENAF--PPTIRKLHVGFNN-LTSLN-NSLRGL----TDLNWLFLNNNR-LKSL-EGQLGTLSKL 108 (245)
Q Consensus 39 ~L~~l~l~~~~i~~~~~~~~--~~~L~~L~l~~~~-~~~~~-~~~~~~----~~L~~L~l~~~~-l~~~-~~~~~~~~~L 108 (245)
+|+.||++++.+++..-..+ .++|++|++++|. ++.-. ..+... ++|++|++++|. +++- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 35555555554443322211 1455555555553 33211 222222 345566665553 3311 1123345566
Q ss_pred cEEEeccc
Q psy4258 109 QLLVIEQN 116 (245)
Q Consensus 109 ~~l~l~~~ 116 (245)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 66666555
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.82 E-value=2.4e-05 Score=59.51 Aligned_cols=63 Identities=27% Similarity=0.369 Sum_probs=52.0
Q ss_pred CCCCCCCEEEccCCcccccc---ccccCCCCccEEEcCCCcccccchhhhcCCC--cccEEEccCCCCcc
Q psy4258 173 QNLHNLDSISLQNNQITSMN---SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK--RLRTVDLSYNKINK 237 (245)
Q Consensus 173 ~~~~~L~~L~l~~~~i~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~--~L~~l~l~~n~l~~ 237 (245)
..++.|+.|++++|.+..++ ..+..+++|+.|+|++|.+.+. ..+..++ +|+.|++++|+++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 45689999999999999764 4556899999999999999985 3344444 89999999999975
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.66 E-value=5.6e-05 Score=54.56 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=17.3
Q ss_pred hhcccccceeecccCcCCC-----chhhhcCCCCCcEEecCC
Q psy4258 125 IQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDF 161 (245)
Q Consensus 125 ~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~ 161 (245)
+..-+.|+.|++..|.+.+ +.+.+..-+.|++|++++
T Consensus 94 L~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 94 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 3334445555555555443 233444444555555543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.60 E-value=9.5e-05 Score=53.37 Aligned_cols=62 Identities=19% Similarity=0.209 Sum_probs=26.7
Q ss_pred CCCCccEEEeccc-ccc-----cCChhhhcccccceeecccCcCCC-----chhhhcCCCCCcEEecCCCccc
Q psy4258 104 TLSKLQLLVIEQN-QLE-----ALPSDIQLFSQLGSLYANNNRITS-----LDGLLRGLTKLQVFNMDFNQIT 165 (245)
Q Consensus 104 ~~~~L~~l~l~~~-~l~-----~~~~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~~~l~~L~l~~~~l~ 165 (245)
+.+.|+.|+++++ .+. .+...+..-+.|+.|++++|.+.+ +...+..-+.|++|++++|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445555555543 332 122223333444555555544442 2333333444455555444443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.42 E-value=0.00034 Score=47.09 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=40.8
Q ss_pred cEEecCCCccc--cccCccCCCCCCCCEEEccCCccccccc-cccCCCCccEEEcCCCccc
Q psy4258 155 QVFNMDFNQIT--MVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLT 212 (245)
Q Consensus 155 ~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~n~l~ 212 (245)
..++.+++.++ .++. .+. ++++.|+|++|.++.++. .+..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777777777 5543 232 468899999999988865 4567888999999988775
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00052 Score=46.13 Aligned_cols=54 Identities=28% Similarity=0.283 Sum_probs=35.3
Q ss_pred eeeccccccc--cccCCCCCCcccEEEecCCccccch-hhhcCCCCCcEEEeeccccC
Q psy4258 42 TLLLVNNNIT--HIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLK 96 (245)
Q Consensus 42 ~l~l~~~~i~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~ 96 (245)
.++.++++++ .++. .+++++++|+|++|.++.++ ..|..+++|++|++++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 5553 34567777777777777665 44566677777777776543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.25 E-value=0.37 Score=30.35 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=31.9
Q ss_pred CCceecCCCCCCCCcccceeeccccccccccCCCCC--CcccEEEecCC
Q psy4258 24 TGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFN 70 (245)
Q Consensus 24 ~~l~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~--~~L~~L~l~~~ 70 (245)
..++.+...+|.+|..|+.+.+... ++.+...+|. .+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 5666777777777777777777653 6666666665 67777777654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.05 E-value=0.48 Score=29.82 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=21.9
Q ss_pred cCccccccEEeeCCCCCceecCCCCCCCCcccceeeccc
Q psy4258 9 DGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVN 47 (245)
Q Consensus 9 ~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~L~~l~l~~ 47 (245)
+.+|.+|+.+.|.. .++.+...+|.+|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcC
Confidence 34566666666655 45555555666666666666554
Done!