RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4258
(245 letters)
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 68.8 bits (168), Expect = 1e-13
Identities = 68/196 (34%), Positives = 94/196 (47%), Gaps = 4/196 (2%)
Query: 34 LKGTPALITLLLVNNNITHI--HENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
L L +L L NNNIT I +++L + N + SL + LR L +L L L+
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
N L L L LS L L + N++ LP +I+L S L L +NN I L L L
Sbjct: 172 FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNL 231
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
L + N++ + + NL NL+++ L NNQI+S+ SSL LT L L LS N L
Sbjct: 232 KNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI-SSLGSLTNLRELDLSGNSL 289
Query: 212 TEFLLDDIRGLKRLRT 227
+ L L L
Sbjct: 290 SNALPLIALLLLLLEL 305
Score = 60.8 bits (147), Expect = 9e-11
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 3/170 (1%)
Query: 70 NNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLG-TLSKLQLLVIEQNQLEALPSDIQLF 128
N L S + L LT+L L L+NN + + +G S L+ L + N++E+LPS ++
Sbjct: 103 NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNL 162
Query: 129 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
L +L + N ++ L LL L+ L ++ N+I+ + E + L L+ + L NN I
Sbjct: 163 PNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSI 221
Query: 189 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ SSLS L L+ L LS+N+L E L + I L L T+DLS N+I+
Sbjct: 222 IELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSI 270
Score = 42.6 bits (100), Expect = 1e-04
Identities = 49/153 (32%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 145
L L++N L L L L L LL ++ L SL N NR+ S
Sbjct: 50 LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 205
L LT L ++D N IT + NL + L +N+I S+ S L L L L
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLD 169
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
LS N L++ L + L L +DLS NKI+
Sbjct: 170 LSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDL 201
Score = 31.9 bits (72), Expect = 0.28
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 111 LVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRD 170
L + N L LPS + L L + + I+SLDG L L + ++D N +
Sbjct: 52 LNLSSNTLLLLPSSLSRLLSLDLL--SPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI 109
Query: 171 EF-QNLHNLDSISLQNNQITSMNSSLSGLT-KLAYLYLSHNQLTEFLLDDIRGLKRLRTV 228
L NL S+ L NN IT + + L L L LS N++ L +R L L+ +
Sbjct: 110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNL 168
Query: 229 DLSYNKINKFGTRN 242
DLS+N ++
Sbjct: 169 DLSFNDLSDLPKLL 182
>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional.
Length = 788
Score = 61.3 bits (148), Expect = 8e-11
Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 40/214 (18%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P L+ L + +N +TH+ A P + KL + N LTSL GL +L+ +++N+L S
Sbjct: 262 PGLLELSIFSNPLTHL--PALPSGLCKLWIFGNQLTSLPVLPPGLQELS---VSDNQLAS 316
Query: 98 L-------------EGQLGTL----SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 140
L QL +L S LQ L + NQL +LP+ L S+L L+A NNR
Sbjct: 317 LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNR 373
Query: 141 ITSLDGLLRG----------LTKLQVFNMDFNQITMVRRDEFQNL----HNLDSISLQNN 186
+TSL L G LT L V + ++ MV + +L L S+S+ N
Sbjct: 374 LTSLPALPSGLKELIVSGNRLTSLPVLPSELKEL-MVSGNRLTSLPMLPSGLLSLSVYRN 432
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR 220
Q+T + SL L+ + L N L+E L +R
Sbjct: 433 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 466
Score = 57.9 bits (139), Expect = 1e-09
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 40/197 (20%)
Query: 38 PALITLLLV-NNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLN---------- 86
PA IT L++ +NN+T + A PP +R L V N LTSL GL +L+
Sbjct: 221 PAHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP 278
Query: 87 ---------WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 137
W+F N+L SL LQ L + NQL +LP+ L S+L L+A
Sbjct: 279 ALPSGLCKLWIF--GNQLTSLP---VLPPGLQELSVSDNQLASLPA---LPSELCKLWAY 330
Query: 138 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 197
NN++TSL L GL +L V + + + + ++ + NN++TS+ + SG
Sbjct: 331 NNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYK-------LWAYNNRLTSLPALPSG 383
Query: 198 LTKLAYLYLSHNQLTEF 214
L +L +S N+LT
Sbjct: 384 LKELI---VSGNRLTSL 397
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 51.6 bits (123), Expect = 1e-07
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 31/192 (16%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
+ TL+L NN + + EN I+ L+ N LTS+ +L + L+ NR+ L
Sbjct: 201 ITTLILDNNELKSLPEN-LQGNIKTLYANSNQLTSIPATLPDTIQE--MELSINRITELP 257
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFN 158
+L S LQ L + N++ LP ++ + S+Y N+ I +L L G+T L V +
Sbjct: 258 ERLP--SALQSLDLFHNKISCLPENLPEELRYLSVYDNS--IRTLPAHLPSGITHLNVQS 313
Query: 159 MDFNQITMVRRDEFQNLHNLDS------------------ISLQNNQITSMNSSLSGLTK 200
N +T + L L++ + + NQIT + +L
Sbjct: 314 ---NSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLP--PT 368
Query: 201 LAYLYLSHNQLT 212
+ L +S N LT
Sbjct: 369 ITTLDVSRNALT 380
Score = 33.9 bits (77), Expect = 0.073
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P+ IT L V +N PP ++ L G N LTSL SL +L L ++ N++
Sbjct: 303 PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITV 360
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
L L + L + +N L LP + L + L + A+ N + L
Sbjct: 361 LPETLP--PTITTLDVSRNALTNLPEN--LPAALQIMQASRNNLVRL 403
Score = 32.0 bits (72), Expect = 0.30
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 23 ETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSL 79
E G + LTS P L L + N IT + E PPTI L V N LT+L +L
Sbjct: 331 EAGENALTSLPASLPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTNLPENL 386
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 44.1 bits (105), Expect = 2e-06
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQL 211
L+ ++ N++T++ F+ L NL + L N +TS++ + SGL L L LS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 42.5 bits (101), Expect = 5e-06
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 177 NLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
NL S+ L NN++T + + GL L L LS N LT + GL LR++DLS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 39.4 bits (93), Expect = 7e-05
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 130 QLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
L SL +NNR+T + DG +GL L+V ++ N +T + + F L +L S+ L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.6 bits (83), Expect = 0.001
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 40 LITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRL 95
L +L L NN +T I + AF P ++ L + NNLTS++ + GL L L L+ N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 31.7 bits (73), Expect = 0.034
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 62 IRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIEQNQL 118
++ L + N LT + + +GL +L L L+ N L S+ + L L+ L + N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 30.6 bits (70), Expect = 0.10
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 85 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRI 141
L L L+NNRL + G L L++L + N L ++ + L SL + N +
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 25.6 bits (57), Expect = 5.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L L LS+N+LT +GL L+ +DLS N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT 37
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 48.3 bits (115), Expect = 2e-06
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 42/209 (20%)
Query: 60 PTIRKLHVGFNNLT--------SLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
P I+ +++ N L+ + ++SLR L NNN S+ G++ L+ L
Sbjct: 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN-----LSNNNFTGSIPR--GSIPNLETL 145
Query: 112 VIEQNQLEA-LPSDIQLFSQLGSLYANNNRITS-LDGLLRGLTKLQVFNMDFNQITMVRR 169
+ N L +P+DI FS L L N + + L LT L+ + NQ+
Sbjct: 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP 205
Query: 170 DEFQNLHNLDSISLQNN-----------QITSMN--------------SSLSGLTKLAYL 204
E + +L I L N +TS+N SSL L L YL
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+L N+L+ + I L++L ++DLS N
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDN 294
Score = 44.5 bits (105), Expect = 3e-05
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 32/190 (16%)
Query: 70 NNLTSLNNSLRGLT-----------DLNWLFLNNNRLKSLEGQ----LGTLSKLQLLVIE 114
NNLT L+ S LT +L L L +N SLEG+ LG L+ + ++
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN---SLEGEIPKSLGACRSLRRVRLQ 412
Query: 115 QNQLEA-LPSDIQLFSQLGSLY----ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR 169
N LPS+ F++L +Y +NNN ++ + LQ+ ++ N+
Sbjct: 413 DNSFSGELPSE---FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469
Query: 170 DEF--QNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
D F + L NLD L NQ + L L++L L LS N+L+ + D++ K+L
Sbjct: 470 DSFGSKRLENLD---LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526
Query: 227 TVDLSYNKIN 236
++DLS+N+++
Sbjct: 527 SLDLSHNQLS 536
Score = 40.6 bits (95), Expect = 6e-04
Identities = 66/260 (25%), Positives = 106/260 (40%), Gaps = 29/260 (11%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLT- 73
+ I+L S P+ D + +L L L NNN T P + L + N L+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154
Query: 74 SLNNSLRGLTDLNWLFLNNNRLKS-LEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQL 131
+ N + + L L L N L + L L+ L+ L + NQL +P ++ L
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214
Query: 132 GSLYAN-NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT- 189
+Y NN + + GLT L ++ +N +T NL NL + L N+++
Sbjct: 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274
Query: 190 SMNSSLSGLTKLAYLYLSHNQLT----EFLL------------DDIRG--------LKRL 225
+ S+ L KL L LS N L+ E ++ ++ G L RL
Sbjct: 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL 334
Query: 226 RTVDLSYNKINKFGTRNEGK 245
+ + L NK + +N GK
Sbjct: 335 QVLQLWSNKFSGEIPKNLGK 354
Score = 40.2 bits (94), Expect = 7e-04
Identities = 35/145 (24%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT-SLDGLLR 149
NNN + + + LQ+L + +N+ D +L +L + N+ + ++ L
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLG 496
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSH 208
L++L + N+++ DE + L S+ L +NQ++ + +S S + L+ L LS
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556
Query: 209 NQLTEFLLDDIRGLKRLRTVDLSYN 233
NQL+ + ++ ++ L V++S+N
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHN 581
Score = 30.6 bits (69), Expect = 0.90
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 96 KSLEGQLGT----LSKLQLLVIEQNQLEA-LPSDI-QLFSQLGSLYANNNRITSL--DGL 147
K++ G++ + L +Q + + NQL +P DI S L L +NN T G
Sbjct: 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS 138
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYL 206
+ L L + N N ++ ++ + +L + L N + + +SL+ LT L +L L
Sbjct: 139 IPNLETLDLSN---NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ NQL + ++ +K L+ + L YN ++
Sbjct: 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 43.5 bits (103), Expect = 4e-05
Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 25/155 (16%)
Query: 106 SKLQLLVIEQNQLEALPSDI------QLFSQLGSLYANNNRITS-----LDGLLRGLTKL 154
S LQ L + N L + L L L NR+ L LR L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167
Query: 155 QVFNMDFNQITM--VRR--DEFQNLHNLDSISLQNNQITSMNSS-----LSGLTKLAYLY 205
+ N+ N I +R + + NL+ + L NN +T +S L+ L L L
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227
Query: 206 LSHNQLT-----EFLLDDIRGLKRLRTVDLSYNKI 235
L N LT + L T+ LS N I
Sbjct: 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 34.0 bits (79), Expect = 0.004
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
T L L LS+NQ+T+ L + L L T+DLS NKI
Sbjct: 1 TNLETLDLSNNQITD--LPPLSNLPNLETLDLSGNKITDL 38
Score = 31.7 bits (73), Expect = 0.022
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 176 HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF 214
NL+++ L NNQIT + LS L L L LS N++T+
Sbjct: 1 TNLETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDL 38
Score = 28.6 bits (65), Expect = 0.33
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 193
T L+ ++ NQIT + NL NL+++ L N+IT ++
Sbjct: 1 TNLETLDLSNNQITDL--PPLSNLPNLETLDLSGNKITDLSP 40
Score = 28.6 bits (65), Expect = 0.37
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQIT 165
L +L +NN+IT L L L L+ ++ N+IT
Sbjct: 2 NLETLDLSNNQITDLPPL-SNLPNLETLDLSGNKIT 36
Score = 27.8 bits (63), Expect = 0.65
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG 100
+ L + N +T L L L +L L L+ N++ L
Sbjct: 1 TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 26.3 bits (59), Expect = 2.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 85 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS 123
L L L+NN++ L L L L+ L + N++ L
Sbjct: 3 LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40
Score = 25.5 bits (57), Expect = 3.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 107 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 147
L+ L + NQ+ LP + L +L + N+IT L L
Sbjct: 2 NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSPL 41
Score = 24.8 bits (55), Expect = 7.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNN 77
L TL L NN IT + + P + L + N +T L+
Sbjct: 1 TNLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSP 40
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 32.5 bits (74), Expect = 0.20
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 170 DEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTV 228
++ L +L SI+L N I ++ SL +T L L LS+N + + + L LR +
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495
Query: 229 DLSYN 233
+L+ N
Sbjct: 496 NLNGN 500
>gnl|CDD|222612 pfam14233, DUF4335, Domain of unknown function (DUF4335). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 204 and
480 amino acids in length. There are two completely
conserved residues (G and D) that may be functionally
important.
Length = 186
Score = 28.4 bits (64), Expect = 2.2
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 29/117 (24%)
Query: 79 LRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN--------QLEALPSDIQLFSQ 130
L GL DL+ N L L LS +L +I Q LEAL + S
Sbjct: 12 LEGLPDLSRWASNG----ELRDLLFILSFWELRLIGQPVTLEGGREHLEAL---MDAVSS 64
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
Y L G+ Q F + + +++ +D H L SL +
Sbjct: 65 ----YVQE--------FLSGVPHPQTFGSESSLVSLRPQD--LLTHRLVLGSLAPDV 107
>gnl|CDD|223714 COG0641, AslB, Arylsulfatase regulator (Fe-S oxidoreductase)
[General function prediction only].
Length = 378
Score = 28.6 bits (64), Expect = 3.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
+ D +++GL LQ +DFN +T+V R +
Sbjct: 140 TFDRVMKGLELLQAHGVDFNTLTVVNRQNVLH 171
>gnl|CDD|191867 pfam07837, FTCD_N, Formiminotransferase domain, N-terminal
subdomain. The formiminotransferase (FT) domain of
formiminotransferase- cyclodeaminase (FTCD) forms a
homodimer, and each protomer comprises two subdomains.
The N-terminal subdomain is made up of a six-stranded
mixed beta-pleated sheet and five alpha helices, which
are arranged on the external surface of the beta sheet.
This, in turn, faces the beta-sheet of the C-terminal
subdomain to form a double beta-sheet layer. The two
subdomains are separated by a short linker sequence,
which is not thought to be any more flexible than the
remainder of the molecule. The substrate is predicted
to form a number of contacts with residues found in
both the N-terminal and C-terminal subdomains.
Length = 178
Score = 27.9 bits (63), Expect = 4.0
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 13 VALNLIDLEPETGSHP 28
A LID+ G HP
Sbjct: 66 KAAELIDMRKHKGEHP 81
>gnl|CDD|214639 smart00364, LRR_BAC, Leucine-rich repeats, bacterial type.
Length = 20
Score = 24.9 bits (56), Expect = 5.0
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 59 PPTIRKLHVGFNNLTSL 75
PP++++L+V N LTSL
Sbjct: 1 PPSLKELNVSNNQLTSL 17
>gnl|CDD|237612 PRK14108, PRK14108, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Provisional.
Length = 986
Score = 27.7 bits (62), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 118 LEALPSDIQLFSQLGS 133
L+ LP+ IQLFS L S
Sbjct: 559 LQGLPAGIQLFSLLQS 574
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional.
Length = 284
Score = 27.4 bits (61), Expect = 7.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 204 LYLSHNQLTEFLLDDIRG 221
++LS QL LL+DI+G
Sbjct: 2 IFLSDAQLDALLLEDIQG 19
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.379
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,180,098
Number of extensions: 1128885
Number of successful extensions: 1071
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1011
Number of HSP's successfully gapped: 63
Length of query: 245
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 151
Effective length of database: 6,768,326
Effective search space: 1022017226
Effective search space used: 1022017226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.8 bits)