RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4258
(245 letters)
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 132 bits (335), Expect = 2e-36
Identities = 45/207 (21%), Positives = 88/207 (42%), Gaps = 7/207 (3%)
Query: 37 TPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRL 95
+ ++ ++ + + P R L++ NN+ + ++ R L L L L N +
Sbjct: 53 SNQFSKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 96 KSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLT 152
+ +E G L+ L L + N L +PS + S+L L+ NN I S+ +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171
Query: 153 KLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
L ++ + ++ + F+ L NL ++L I M + L+ L L L +S N
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHF 230
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKINKF 238
E GL L+ + + ++++
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLI 257
Score = 131 bits (331), Expect = 6e-36
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNR 94
L L+ NNI I + F + L +G N++ + + GL LN L L +N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 95 LKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNNRITSL-DGLL 148
L + G LSKL+ L + N +E++PS F+++ SL ++ + +G
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLS 207
GL L+ N+ I + L L+ + + N S GL+ L L++
Sbjct: 193 EGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++Q++ + GL L ++L++N +
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNL 278
Score = 131 bits (330), Expect = 7e-36
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 8/212 (3%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ +D + L L L N+I I AF ++ L + N LT + + + L+ L
Sbjct: 90 IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVI-EQNQLEALPSDI-QLFSQLGSLYANNNRIT 142
L+L NN ++S+ + L L + E +LE + + L L I
Sbjct: 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201
+ L L L+ M N +R F L +L + + N+Q++ + ++ GL L
Sbjct: 210 DMPNL-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
L L+HN L+ D L+ L + L +N
Sbjct: 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
Score = 111 bits (280), Expect = 9e-29
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 8/190 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ G +L TL L +N +T I AF +R+L + N + S+ + + + L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 86 NWLFL-NNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 143
L L +L+ + EG L L+ L + ++ +P+ L L L + N
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL-VGLEELEMSGNHFPE 232
Query: 144 L-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201
+ G GL+ L+ + +Q++++ R+ F L +L ++L +N ++S+ + + L L
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292
Query: 202 AYLYLSHNQL 211
L+L HN
Sbjct: 293 VELHLHHNPW 302
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 132 bits (335), Expect = 2e-36
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 11/216 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
L D+ P L L L N ++ + AF +R L + N L + GL++L
Sbjct: 47 LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRI 141
L ++ N++ L L L+ L + N L + FS L SL +
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNL 164
Query: 142 TSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQITSMNSSLSGLT 199
TS+ L L L V + I +R F+ L+ L + + + +M +
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L L ++H LT +R L LR ++LSYN I
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260
Score = 128 bits (323), Expect = 1e-34
Identities = 48/216 (22%), Positives = 86/216 (39%), Gaps = 11/216 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ G L L + N I + + F ++ L VG N+L + + + GL L
Sbjct: 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL 154
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNNR 140
L L L S+ L L L +L + + A+ F +L L ++
Sbjct: 155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPY 212
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLT 199
+ ++ L ++ +T V ++L L ++L N I+++ S L L
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+L + L QL RGL LR +++S N++
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 126 bits (319), Expect = 4e-34
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 7/205 (3%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
L L N I ++++ F P + +L + N ++++ + L +L L L +NR
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 95 LKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGL 151
LK + G LS L L I +N++ L + Q L SL +N + + GL
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQ 210
L+ ++ +T + + +LH L + L++ I ++ S L +L L +SH
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKI 235
+ + + L ++ +++ +
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNL 236
Score = 121 bits (306), Expect = 3e-32
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 7/215 (3%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85
L + L +L + +N++ +I AF ++ +L + NLTS+ +L L L
Sbjct: 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVI-EQNQLEALPSDIQLFSQLGSLYANNNRITS 143
L L + + ++ L +L++L I L+ + + L SL + +T+
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238
Query: 144 L-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKL 201
+ +R L L+ N+ +N I+ + L L I L Q+ + + GL L
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L +S NQLT + L T+ L N +
Sbjct: 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 107 bits (269), Expect = 4e-27
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 26/199 (13%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSLEG 100
+L + E P R L +G N + +LN + L L LN N + ++E
Sbjct: 15 AVLCHRKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 101 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM 159
G + L L +L +NR+ + G+ GL+ L ++
Sbjct: 74 --GAFNNL--------------------FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDD 218
N+I ++ FQ+L+NL S+ + +N + + + SGL L L L LT +
Sbjct: 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171
Query: 219 IRGLKRLRTVDLSYNKINK 237
+ L L + L + IN
Sbjct: 172 LSHLHGLIVLRLRHLNINA 190
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 132 bits (333), Expect = 2e-36
Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 14/208 (6%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
L L N I I N+F + L + N++ ++ + GL +LN L L +NR
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 95 LKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNNRITSL-DGLL 148
L ++ G LSKL+ L + N +E++PS F+++ SL R++ + +G
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAF 181
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLS 207
GL+ L+ N+ + + L LD + L N ++++ S GL L L++
Sbjct: 182 EGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+Q+ + L+ L ++L++N +
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNL 267
Score = 131 bits (331), Expect = 4e-36
Identities = 46/206 (22%), Positives = 92/206 (44%), Gaps = 7/206 (3%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLK 96
++ V N+ + + R L++ N + + NS + L L L L+ N ++
Sbjct: 43 NQFSKVICVRKNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101
Query: 97 SLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTK 153
++E G L+ L L + N+L +P+ S+L L+ NN I S+ +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161
Query: 154 LQVFNM-DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
L+ ++ + +++ + F+ L NL ++L + + + L+ L KL L LS N L+
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS 220
Query: 213 EFLLDDIRGLKRLRTVDLSYNKINKF 238
+GL L+ + + ++I
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVI 246
Score = 130 bits (329), Expect = 1e-35
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 8/212 (3%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ + K L L L N+I I AF + L + N LT++ N + L+ L
Sbjct: 79 IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVI-EQNQLEALPSDI-QLFSQLGSLYANNNRIT 142
L+L NN ++S+ + L+ L + E +L + + S L L +
Sbjct: 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201
+ L L KL ++ N ++ +R FQ L +L + + +QI + ++ L L
Sbjct: 199 EIPNL-TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+ L+HN LT D L L + L +N
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
Score = 114 bits (286), Expect = 1e-29
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ G L TL L +N +T I AF +++L + N + S+ + + + L
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162
Query: 86 NWLFL-NNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 143
L L RL + EG LS L+ L + L +P+ L +L L + N +++
Sbjct: 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL-IKLDELDLSGNHLSA 221
Query: 144 L-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201
+ G +GL LQ M +QI ++ R+ F NL +L I+L +N +T + + + L L
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Query: 202 AYLYLSHNQL 211
++L HN
Sbjct: 282 ERIHLHHNPW 291
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 128 bits (324), Expect = 7e-36
Identities = 49/218 (22%), Positives = 86/218 (39%), Gaps = 14/218 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNW 87
++ L L L N + + E T+++L V N +T + + GL +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIV 149
Query: 88 LFLNNNRLKSLEGQLGT---LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
+ L N LKS + G + KL + I + +P L L L+ + N+IT +
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKV 207
Query: 145 -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAY 203
L+GL L + FN I+ V N +L + L NN++ + L+ +
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 267
Query: 204 LYLSHNQLTEFLLDDIR------GLKRLRTVDLSYNKI 235
+YL +N ++ +D V L N +
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305
Score = 121 bits (305), Expect = 5e-33
Identities = 56/219 (25%), Positives = 104/219 (47%), Gaps = 14/219 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
+ D K L TL+L+NN I+ I AF + +L++ N L L + L
Sbjct: 67 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQ 124
Query: 87 WLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---NNNRIT 142
L ++ N + + + L+++ ++ + N L++ + F + L + IT
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 143 SL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 200
++ GL LT+L ++D N+IT V + L+NL + L N I+++ N SL+
Sbjct: 185 TIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 201 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
L L+L++N+L + + + K ++ V L N I+ G
Sbjct: 242 LRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIG 279
Score = 120 bits (304), Expect = 6e-33
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 17/208 (8%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
P L L NN IT I + F + L + N ++ + + L L L+L+ N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 95 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSL---DGLL 148
LK L LQ L + +N++ + +F+ L + N + S +G
Sbjct: 112 LKELPE--KMPKTLQELRVHENEITKVRKS--VFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLS 207
+G+ KL + IT + + +L L L N+IT +++ SL GL LA L LS
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
N ++ + LR + L+ NK+
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKL 252
Score = 89.7 bits (223), Expect = 3e-21
Identities = 36/172 (20%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN-NSLRGLTD 84
S + + +G L + + + NIT I + P++ +LH+ N +T ++ SL+GL +
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNN 217
Query: 85 LNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 143
L L L+ N + +++ G L L+ L + N+L +P + + +Y +NN I++
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Query: 144 LD-------GLLRGLTKLQVFNMDFNQITM--VRRDEFQNLHNLDSISLQNN 186
+ G ++ N + ++ F+ ++ ++ L N
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 77.0 bits (190), Expect = 9e-17
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
LE +P D+ L NN+IT + DG + L L + N+I+ + F
Sbjct: 41 LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 98
Query: 175 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
L L+ + L NQ+ + + L L + N++T+ GL ++ V+L N
Sbjct: 99 LVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 235 INKFG 239
+ G
Sbjct: 157 LKSSG 161
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 125 bits (316), Expect = 5e-35
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 8/204 (3%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFL-NNN 93
A + L N I+H+ +F + L + N L + + GL L L L +N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 94 RLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRG 150
+L+S++ L +L L +++ L+ L + + + L LY +N + +L D R
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHN 209
L L + N+I+ V F+ LH+LD + L N++ ++ + L +L LYL N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYN 233
L+ + + L+ L+ + L+ N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235
Score = 120 bits (303), Expect = 4e-33
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 7/195 (3%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGT 104
+ + P +++ + N ++ + S R +L L+L++N L ++
Sbjct: 20 QQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG 78
Query: 105 LSKLQLLVIEQN-QLEALPSDI-QLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDF 161
L+ L+ L + N QL ++ +L +L+ + + L GL RGL LQ +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIR 220
N + + D F++L NL + L N+I+S+ + GL L L L N++ R
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 221 GLKRLRTVDLSYNKI 235
L RL T+ L N +
Sbjct: 199 DLGRLMTLYLFANNL 213
Score = 117 bits (294), Expect = 8e-32
Identities = 53/191 (27%), Positives = 90/191 (47%), Gaps = 8/191 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNN-LTSL-NNSLRGLTD 84
+ + + L L L +N + I AF + +L + N L S+ + GL
Sbjct: 47 VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106
Query: 85 LNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRIT 142
L+ L L+ L+ L G L+ LQ L ++ N L+ALP D + L L+ + NRI+
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 143 SL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 200
S+ + RGL L + N++ V F++L L ++ L N ++++ +L+ L
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 201 LAYLYLSHNQL 211
L YL L+ N
Sbjct: 227 LQYLRLNDNPW 237
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 125 bits (316), Expect = 1e-34
Identities = 47/217 (21%), Positives = 90/217 (41%), Gaps = 13/217 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNW 87
+ L L + N++ I N ++ +L + N + + GL ++N
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLPS-SLVELRIHDNRIRKVPKGVFSGLRNMNC 151
Query: 88 LFLNNNRLKSLEGQLGTLS--KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL- 144
+ + N L++ + G KL L I + +L +P D L L L+ ++N+I ++
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD--LPETLNELHLDHNKIQAIE 209
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
L +KL + NQI M+ L L + L NN+++ + + L L L +
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVV 269
Query: 205 YLSHNQLTEFLLDDIRGLK------RLRTVDLSYNKI 235
YL N +T+ ++D + + L N +
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Score = 119 bits (300), Expect = 3e-32
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 13/218 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
L DD KG L L+LVNN I+ IHE AF ++KL++ N+L + +L + L
Sbjct: 69 LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLV 126
Query: 87 WLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLYANNNRITS 143
L +++NR++ + +G L + + + N LE + F +L L + ++T
Sbjct: 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186
Query: 144 L-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201
+ L L +L ++D N+I + ++ L + L +NQI + N SLS L L
Sbjct: 187 IPKDLPETLNEL---HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
L+L +N+L+ + + LK L+ V L N I K G
Sbjct: 244 RELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVG 280
Score = 112 bits (282), Expect = 1e-29
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 18/208 (8%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
P L L NN+I+ + ++ F + L + N ++ + + L L L+++ N
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 95 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSL---DGLL 148
L + S L L I N++ +P +FS L ++ N + + G
Sbjct: 114 LVEIPP--NLPSSLVELRIHDNRIRKVPKG--VFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLS 207
GL KL + ++T + +D + L+ L L +N+I ++ L +KL L L
Sbjct: 170 DGL-KLNYLRISEAKLTGIPKDLPETLNELH---LDHNKIQAIELEDLLRYSKLYRLGLG 225
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
HNQ+ + L LR + L NK+
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKL 253
Score = 90.8 bits (226), Expect = 1e-21
Identities = 41/196 (20%), Positives = 79/196 (40%), Gaps = 16/196 (8%)
Query: 29 LTSDDLKGTPALITLLLVNNNITH--IHENAF-PPTIRKLHVGFNNLTSLNNSLRGLTDL 85
+ G + + + N + + AF + L + LT + L L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETL 195
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITS 143
N L L++N+++++E L SKL L + NQ+ + + L L+ +NN+++
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR 255
Query: 144 LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH------NLDSISLQNNQITSMN---SS 194
+ L L LQV + N IT V ++F + + ISL NN + ++
Sbjct: 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315
Query: 195 LSGLTKLAYLYLSHNQ 210
+T + + +
Sbjct: 316 FRCVTDRLAIQFGNYK 331
Score = 75.1 bits (185), Expect = 4e-16
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 5/133 (3%)
Query: 108 LQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 166
L+++ L+A+P +I L NN I+ L +GL L + N+I+
Sbjct: 35 LRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
+ F L L + + N + + +L + L L + N++ + GL+ +
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150
Query: 227 TVDLSYNKINKFG 239
+++ N + G
Sbjct: 151 CIEMGGNPLENSG 163
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 120 bits (304), Expect = 4e-33
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 12/209 (5%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL---NNSLRGLTDLNWLFLNN 92
+ L L +N + + F + KL + N L+ + S G T L +L L+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 93 NRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSL-DGLL 148
N + ++ L +L+ L + + L+ + +F L +L ++ +G+
Sbjct: 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 149 RGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYL 206
GL+ L+V M N D F L NL + L Q+ + ++ + L+ L L +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
SHN + L L+ +D S N I
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
Score = 118 bits (299), Expect = 2e-32
Identities = 41/221 (18%), Positives = 82/221 (37%), Gaps = 15/221 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP----PTIRKLHVGFNNLTSLNNSLRGLTD 84
L L L L +N ++ + +++ L + FN + +++++ GL
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102
Query: 85 LNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANN 138
L L ++ LK + +L L L I + I F+ L SL A N
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGN 160
Query: 139 NRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 196
+ + + L L ++ Q+ + F +L +L +++ +N S+
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGL-KRLRTVDLSYNKIN 236
L L L S N + +++ L ++L+ N
Sbjct: 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 117 bits (295), Expect = 8e-32
Identities = 38/203 (18%), Positives = 74/203 (36%), Gaps = 9/203 (4%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE- 99
+ + +T + P + +L + N L SL + LT L L L++N L
Sbjct: 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 100 --GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQ 155
+ L+ L + N + + S+ QL L ++ + + + L L
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTE 213
++ + F L +L+ + + N + L L +L LS QL +
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189
Query: 214 FLLDDIRGLKRLRTVDLSYNKIN 236
L L+ +++S+N
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFF 212
Score = 77.0 bits (190), Expect = 7e-17
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 9/157 (5%)
Query: 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLD- 145
+ N+ L S+ + S L +E N+L++LP + +QL L ++N ++
Sbjct: 12 IRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69
Query: 146 --GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKL 201
G T L+ ++ FN + + + F L L+ + Q++ + M S L L
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
YL +SH GL L + ++ N +
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 115 bits (289), Expect = 3e-31
Identities = 56/182 (30%), Positives = 94/182 (51%), Gaps = 9/182 (4%)
Query: 59 PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P +KL + N L+SL + + LT L L+LN+N+L++L G L L+ L + N
Sbjct: 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 117 QLEALPSDIQLFSQLGS---LYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 172
+L+ALP + F QL + L + N++ SL + LTKL ++ +N++ + + F
Sbjct: 96 KLQALPIGV--FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 173 QNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
L +L + L NNQ+ + + LT+L L L +NQL L++L+ + L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 232 YN 233
N
Sbjct: 214 EN 215
Score = 95.4 bits (238), Expect = 9e-24
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 29/187 (15%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
L S L L L +N + + F + L +L L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIF---------------------KELKNLETL 90
Query: 89 FLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYANNNRITSL 144
++ +N+L++L G L L L +++NQL++LP + F ++L L N + SL
Sbjct: 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV--FDSLTKLTYLSLGYNELQSL 148
Query: 145 -DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLA 202
G+ LT L+ + NQ+ V F L L ++ L NNQ+ + + L KL
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208
Query: 203 YLYLSHN 209
L L N
Sbjct: 209 MLQLQEN 215
Score = 81.6 bits (202), Expect = 1e-18
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 32/176 (18%)
Query: 70 NNLTSLNNSLRGLT--------DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA 120
NN S++ S + LT D L L +N+L SL L+KL+LL + N+L+
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180
LP+ G+ + L L+ + N++ + F L NL
Sbjct: 76 LPA----------------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 181 ISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ L NQ+ S+ + LTKL YL L +N+L L L+ + L N++
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Score = 58.1 bits (141), Expect = 3e-10
Identities = 15/87 (17%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 210
+ ++ N+++ + F L L + L +N++ ++ + + L L L+++ N+
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKINK 237
L + L L + L N++
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKS 123
Score = 36.5 bits (85), Expect = 0.005
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 22/88 (25%)
Query: 39 ALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSL 98
+L L L NN + + E AF LT+L L L+NN+LK +
Sbjct: 158 SLKELRLYNNQLKRVPEGAF---------------------DKLTELKTLKLDNNQLKRV 196
Query: 99 -EGQLGTLSKLQLLVIEQNQLEALPSDI 125
EG +L KL++L +++N + + I
Sbjct: 197 PEGAFDSLEKLKMLQLQENPWDCTCNGI 224
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 115 bits (291), Expect = 1e-30
Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 24/227 (10%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85
L + P L L+L N+++ + F P + L + NNL + ++ + T L
Sbjct: 108 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-----------------F 128
L L++NRL + L + L + N L L I +
Sbjct: 168 QNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225
Query: 129 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
+L L +N +T L L ++ +N++ + F + L+ + + NN++
Sbjct: 226 VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Query: 189 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++N + L L LSHN L + + RL + L +N I
Sbjct: 285 VALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 330
Score = 108 bits (272), Expect = 6e-28
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 26/229 (11%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
L + L + L L + I I AF TI+KL++GFN + L + + + L
Sbjct: 60 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119
Query: 86 NWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITS 143
L L N L SL G KL L + N LE + D Q + L +L ++NR+T
Sbjct: 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179
Query: 144 LD-----------------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+D L ++ + N I +VR L L LQ+N
Sbjct: 180 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHN 236
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+T + L L + LS+N+L + + ++RL + +S N++
Sbjct: 237 NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284
Score = 104 bits (262), Expect = 2e-26
Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 13/209 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+ D + T +L L L +N +TH+ + P ++ +V +N L++L + L
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAI----PIAVEEL 210
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GL 147
++N + + G +L +L ++ N L + L + + N + +
Sbjct: 211 DASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP 267
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
+ +L+ + N++ + Q + L + L +N + + + +L LYL
Sbjct: 268 FVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
HN + + L+ + LS+N +
Sbjct: 327 HNSIVTL---KLSTHHTLKNLTLSHNDWD 352
Score = 103 bits (260), Expect = 3e-26
Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 29/242 (11%)
Query: 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT 73
ID++ + L + N+ + + + L++ +
Sbjct: 26 VHIDMQTQDVYFGFEDITL---NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82
Query: 74 SLN-NSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQ 130
++ + + L++ N ++ L + L +LV+E+N L +LP I +
Sbjct: 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 142
Query: 131 LGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD---------- 179
L +L +NN + + D + T LQ + N++T V +L + +
Sbjct: 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202
Query: 180 ------SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+ +N I + + +L L L HN LT+ + L VDLSYN
Sbjct: 203 IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 258
Query: 234 KI 235
++
Sbjct: 259 EL 260
Score = 103 bits (258), Expect = 7e-26
Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 18/207 (8%)
Query: 43 LLLVNNNITHIHENAFP-------PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
+ + +I ++ + + + + + L L + L LN+ +
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 80
Query: 95 LKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLD-GLLRGL 151
++ ++ +Q L + N + LP + Q L L N ++SL G+
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
KL +M N + + D FQ +L ++ L +N++T + LS + L + +S+N L
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL 198
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + + +D S+N IN
Sbjct: 199 ST-----LAIPIAVEELDASHNSINVV 220
Score = 93.6 bits (233), Expect = 2e-22
Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 20/187 (10%)
Query: 69 FNNLTSLNNSLR-------------GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIE 114
+ + + L + + N+ ++ L L + +++LL +
Sbjct: 18 QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77
Query: 115 QNQLEALPSDI-QLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEF 172
Q+E + + + LY N I L + + + L V ++ N ++ + R F
Sbjct: 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137
Query: 173 QNLHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
N L ++S+ NN + + T L L LS N+LT D+ + L ++S
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS 194
Query: 232 YNKINKF 238
YN ++
Sbjct: 195 YNLLSTL 201
Score = 88.2 bits (219), Expect = 2e-20
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 7/179 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L A+ L +N+I + + L + NNLT L L + L+ N
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 258
Query: 94 RLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT 152
L+ + + +L+ L I N+L AL Q L L ++N + ++
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
+L+ +D N I ++ L NL L +N NS + +A +
Sbjct: 319 RLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDWDC-NSLRALFRNVARPAVDDADQ 373
Score = 77.4 bits (191), Expect = 1e-16
Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 3/153 (1%)
Query: 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-FSQLGSLYANNNRITSL-D 145
+ K ++ L + I+ + + + + N+ + L
Sbjct: 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 62
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYL 204
LL ++++ N++ QI + F H + + + N I + + L L
Sbjct: 63 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
L N L+ +L T+ +S N + +
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 117 bits (293), Expect = 3e-30
Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 9/202 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
I L ++T +I ++ +++ S+ ++ L ++ LFLN N
Sbjct: 17 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN 75
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
+L ++ L L L L +++N+++ L S ++ +L SL +N I+ ++G L L +
Sbjct: 76 KLTDIKP-LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDING-LVHLPQ 132
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
L+ + N+IT + L LD++SL++NQI+ + L+GLTKL LYLS N +++
Sbjct: 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD 189
Query: 214 FLLDDIRGLKRLRTVDLSYNKI 235
L + GLK L ++L +
Sbjct: 190 --LRALAGLKNLDVLELFSQEC 209
Score = 112 bits (281), Expect = 1e-28
Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 9/196 (4%)
Query: 43 LLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQL 102
+ V+ I I + K ++ ++T L ++ + NN+ +KS++G +
Sbjct: 4 TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-I 61
Query: 103 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 162
L + L + N+L + + LG L+ + N+I L L+ L KL+ +++ N
Sbjct: 62 QYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHN 119
Query: 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 222
I+ + + +L L+S+ L NN+IT + + LS LTKL L L NQ+++ + + GL
Sbjct: 120 GISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--IVPLAGL 174
Query: 223 KRLRTVDLSYNKINKF 238
+L+ + LS N I+
Sbjct: 175 TKLQNLYLSKNHISDL 190
Score = 110 bits (276), Expect = 5e-28
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 7/207 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
++ ++ N++I + + P + KL + N LT + L L +L WLFL+ N
Sbjct: 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++K L L L KL+ L +E N + + + + QL SLY NN+IT + L LTK
Sbjct: 98 KIKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVL-SRLTK 154
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
L +++ NQI+ + L L ++ L N I+ + +L+GL L L L +
Sbjct: 155 LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKFGT 240
++ L TV + +
Sbjct: 212 KPINHQSNLVVPNTVKNTDGSLVTPEI 238
Score = 86.7 bits (214), Expect = 1e-19
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 5/179 (2%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L L L L N I + ++ L + N ++ +N L L L L+L NN
Sbjct: 83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNN 141
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++ + L L+KL L +E NQ+ + + ++L +LY + N I+ L L GL
Sbjct: 142 KITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRAL-AGLKN 198
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
L V + + + NL +++ + + + +S + +
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE-IISDDGDYEKPNVKWHLPE 256
Score = 68.2 bits (166), Expect = 2e-13
Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
+G + I + + N+ +T L+++D I N+ I S
Sbjct: 1 MGETITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKS 57
Query: 191 MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + L + L+L+ N+LT+ + + LK L + L NKI
Sbjct: 58 V-QGIQYLPNVTKLFLNGNKLTD--IKPLTNLKNLGWLFLDENKIKDL 102
Score = 37.0 bits (85), Expect = 0.004
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 7/135 (5%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
L L TL L +N I+ I A ++ L++ N+++ L L GL +L+ L L
Sbjct: 147 TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELF 205
Query: 92 NNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRG 150
+ + L + + ++ S G Y N L
Sbjct: 206 SQECLNKPINHQSNLVVPNTV----KNTDGSLVTPEIISDDGD-YEKPNVKWHLPEFTNE 260
Query: 151 LTKLQVFNMDFNQIT 165
++ + + +
Sbjct: 261 VSFIFYQPVTIGKAK 275
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 112 bits (282), Expect = 4e-30
Identities = 58/202 (28%), Positives = 85/202 (42%), Gaps = 6/202 (2%)
Query: 35 KGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNN 93
+ + + N+T + + P LH+ N L + +L T L L L+
Sbjct: 7 SKVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLT 152
L L+ GTL L L + NQL++LP Q L L + NR+TSL G LRGL
Sbjct: 66 ELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG 124
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
+LQ + N++ + L+ +SL NN +T + L+GL L L L N L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 212 TEFLLDDIRGLKRLRTVDLSYN 233
+ G L L N
Sbjct: 185 YT-IPKGFFGSHLLPFAFLHGN 205
Score = 108 bits (272), Expect = 1e-28
Identities = 48/175 (27%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 71 NLTSLNNSLRGLT--------DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL 121
+ +N R LT D L L+ N L + L ++L L +++ +L L
Sbjct: 11 SHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSI 181
D L LG+L ++N++ SL L + L L V ++ FN++T + + L L +
Sbjct: 71 QVDGTL-PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129
Query: 182 SLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L+ N++ ++ L+ KL L L++N LTE + GL+ L T+ L N +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 59.3 bits (144), Expect = 1e-10
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 6/110 (5%)
Query: 129 SQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
+ + + +T+L L + T L ++ N + L ++L +
Sbjct: 10 ASHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 188 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
+T + L L L LSHNQL L + L L +D+S+N++
Sbjct: 67 LTKL-QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS 114
Score = 37.0 bits (86), Expect = 0.004
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 24/87 (27%)
Query: 171 EFQNLHNLDSISLQNNQITSM----------------------NSSLSGLTKLAYLYLSH 208
E + + ++ +T++ ++L T+L L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 209 NQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+LT+ L L L T+DLS+N++
Sbjct: 65 AELTK--LQVDGTLPVLGTLDLSHNQL 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 112 bits (282), Expect = 1e-29
Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 9/205 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L L L + + + + A + L + +N + ++ L LT L++ N
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVN 209
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++ + + +++L L I N++ L L SQL L N+I+ ++ + + LTK
Sbjct: 210 QITDITP-VANMTRLNSLKIGNNKITDLSPLANL-SQLTWLEIGTNQISDINAV-KDLTK 266
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLT 212
L++ N+ NQI+ + NL L+S+ L NNQ+ + + + GLT L L+LS N +T
Sbjct: 267 LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324
Query: 213 EFLLDDIRGLKRLRTVDLSYNKINK 237
+ + + L ++ + D + I K
Sbjct: 325 D--IRPLASLSKMDSADFANQVIKK 347
Score = 109 bits (275), Expect = 2e-28
Identities = 58/226 (25%), Positives = 106/226 (46%), Gaps = 26/226 (11%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L+ L L L +NI+ I A + L++G N+ S + L +T LN+L + +
Sbjct: 106 LQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL------ 147
++K + + L+ L L + NQ+E + + + L A N+IT + +
Sbjct: 166 KVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRL 223
Query: 148 ---------------LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
L L++L + NQI+ + + ++L L +++ +NQI+ +
Sbjct: 224 NSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI- 280
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
S L+ L++L L+L++NQL ++ I GL L T+ LS N I
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326
Score = 106 bits (266), Expect = 3e-27
Identities = 48/206 (23%), Positives = 101/206 (49%), Gaps = 8/206 (3%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
++ L L L N IT I + + L++G N +T + ++L+ LT+L L+LN
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLN 118
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
+ + + L L+K+ L + N + S + + L L +++ + + L
Sbjct: 119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANL 176
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
T L ++++NQI + +L +L + NQIT + + ++ +T+L L + +N++
Sbjct: 177 TDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKI 233
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKINK 237
T+ L + L +L +++ N+I+
Sbjct: 234 TD--LSPLANLSQLTWLEIGTNQISD 257
Score = 101 bits (255), Expect = 1e-25
Identities = 46/198 (23%), Positives = 92/198 (46%), Gaps = 8/198 (4%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
TL + I I +A + + ++T + L + L + ++ S++
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQ 60
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
G + L+ L+ L + NQ+ + + +L +LY N+IT + L+ LT L+ +
Sbjct: 61 G-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYL 117
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
+ + I+ + NL + S++L N S S LS +T L YL ++ +++ + + I
Sbjct: 118 NEDNISDI--SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD--VTPI 173
Query: 220 RGLKRLRTVDLSYNKINK 237
L L ++ L+YN+I
Sbjct: 174 ANLTDLYSLSLNYNQIED 191
Score = 100 bits (252), Expect = 3e-25
Identities = 47/205 (22%), Positives = 90/205 (43%), Gaps = 8/205 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
I +L ++T + +I KL V + S+ + LT+L +L LN N
Sbjct: 18 DADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN 76
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++ + L L KL L I N++ + + +Q + L LY N + I+ + L LTK
Sbjct: 77 QITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP-LANLTK 133
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
+ N+ N N+ L+ +++ +++ + + ++ LT L L L++NQ+ +
Sbjct: 134 MYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIED 191
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKF 238
+ + L L N+I
Sbjct: 192 --ISPLASLTSLHYFTAYVNQITDI 214
Score = 78.4 bits (194), Expect = 3e-17
Identities = 34/155 (21%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 81 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 140
G L L N++ L++ V+++ + + + + + L +
Sbjct: 1 GAATLATLPAPINQIFPDAD----LAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEK 55
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 200
+ S+ G+ LT L+ N++ NQIT + NL L ++ + N+IT + S+L LT
Sbjct: 56 VASIQGI-EYLTNLEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDI-SALQNLTN 111
Query: 201 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L LYL+ + +++ + + L ++ +++L N
Sbjct: 112 LRELYLNEDNISD--ISPLANLTKMYSLNLGANHN 144
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 110 bits (276), Expect = 2e-29
Identities = 48/202 (23%), Positives = 81/202 (40%), Gaps = 11/202 (5%)
Query: 43 LLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSL- 98
L L N + H+ +F P ++ L + + ++ + + L+ L+ L L N ++SL
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 99 EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL--DGLLRGLTKLQ 155
G LS LQ LV + L +L + L L +N I S LT L+
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 156 VFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
++ N+I + + + LH + S+ L N + + +L L L NQL
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQL 212
Query: 212 TEFLLDDIRGLKRLRTVDLSYN 233
L L+ + L N
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTN 234
Score = 103 bits (259), Expect = 8e-27
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 15/194 (7%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
L S P L L L I I + A+ + L + N + SL + GL+ L
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRI 141
L L SLE +G L L+ L + N +++ + FS L +L ++N+I
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKI 161
Query: 142 TSL-DGLLRGLTKLQVFN----MDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSL 195
S+ LR L ++ + N + N + ++ F+ + L ++L NQ+ S+ +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIF 220
Query: 196 SGLTKLAYLYLSHN 209
LT L ++L N
Sbjct: 221 DRLTSLQKIWLHTN 234
Score = 83.9 bits (208), Expect = 2e-19
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 25/156 (16%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
L L+ N L+ L + +LQ+L + + +++ +
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE------------------- 68
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTK 200
DG + L+ L + N I + F L +L + + S+ + L
Sbjct: 69 ---DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125
Query: 201 LAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKI 235
L L ++HN + F L + L L +DLS NKI
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 76.9 bits (190), Expect = 5e-17
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+P ++ +L + N + L +LQV ++ +I + +Q+L
Sbjct: 19 FYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS 76
Query: 177 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+L ++ L N I S+ SGL+ L L L I LK L+ +++++N I
Sbjct: 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 236 NKF 238
F
Sbjct: 137 QSF 139
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 113 bits (286), Expect = 5e-29
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 8/204 (3%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL 98
+ +T + ++ P I L++ N L L + + L L + N + L
Sbjct: 6 HEVADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64
Query: 99 E-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-GLLRGLTKLQ 155
E L L++L ++ N+L L + L L+ +N I + L
Sbjct: 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS---SLSGLTKLAYLYLSHNQLT 212
++ N ++ + L NL + L NN+I ++ S + + L L LS NQ+
Sbjct: 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184
Query: 213 EFLLDDIRGLKRLRTVDLSYNKIN 236
EF + RL + L+ ++
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLG 208
Score = 104 bits (262), Expect = 6e-26
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 18/218 (8%)
Query: 36 GTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLN 91
L L L N I+ I +AF + L +G N + RGL ++ ++L+
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438
Query: 92 NNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---NNNRITSLD-G 146
N+ L + LQ L++ + L+ + S F L +L +NN I +++
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
Query: 147 LLRGLTKLQVFNMDFNQITMVRRD--------EFQNLHNLDSISLQNNQITSM-NSSLSG 197
+L GL KL++ ++ N + + + + L +L ++L++N +
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558
Query: 198 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L +L + L N L L++++L N I
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596
Score = 102 bits (255), Expect = 6e-25
Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 22/230 (9%)
Query: 29 LTSDDLKGTPALITLLLVNN--NITHIHENAFP----PTIRKLHVGFNNLTSL-NNSLRG 81
+ S+ G L L L N+ ++ + F + L++ N ++ + +++
Sbjct: 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403
Query: 82 LTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANN 138
L L L L N + + L + + + N+ L + L L L
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463
Query: 139 NRITSLD---GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM---- 191
+ ++D + L L + ++ N I + D + L L+ + LQ+N + +
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523
Query: 192 -----NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L GL+ L L L N E ++ + L L+ +DL N +N
Sbjct: 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573
Score = 101 bits (253), Expect = 1e-24
Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 14/224 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85
L + + L +L + N I+ + P ++ L++ N L+ L+ + T+L
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITS 143
L L +N ++ ++ L L + N L + L L +NN+I +
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159
Query: 144 L---DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT----SMNSSLS 196
L + + + L+ + NQI F + L + L N Q+
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLK--RLRTVDLSYNKINKF 238
T + L LS++QL+ GLK L +DLSYN +N
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Score = 97.8 bits (244), Expect = 2e-23
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN---NSLR 80
LT + +G + + L N + N+F P++++L + L +++ + +
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477
Query: 81 GLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD---------IQLFSQ 130
L +L L L+NN + ++ + L L KL++L ++ N L L ++ S
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537
Query: 131 LGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
L L +N + + + L +L++ ++ N + + F N +L S++LQ N IT
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597
Query: 190 SMNSSL--SGLTKLAYLYLSHNQLT 212
S+ + L L + N
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 97.8 bits (244), Expect = 2e-23
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 14/213 (6%)
Query: 40 LITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLK 96
+ ++ I + +F + L++ N++ + N GL +L +L L+N+
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 97 SLEGQLGTL-----SKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL--DGLL 148
T S L +L + +N++ + SD L L N I
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS---LSGLTKLAYLY 205
RGL + + +N+ + R+ F + +L + L+ + +++SS L L L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILD 486
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
LS+N + D + GL++L +DL +N + +
Sbjct: 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Score = 94.3 bits (235), Expect = 3e-22
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 21/223 (9%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
L L L NN+ + ++F P + + +NN+ L ++SL GL ++ +L L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF 307
Query: 95 LKSL----------EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITS 143
K + L L+ L +E N + + S++ L L +N+ +
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 144 LD---GLLRGL--TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLS 196
L + L + N+ N+I+ + D F L +L+ + L N+I
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
GL + +YLS+N+ + + + L+ + L +
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Score = 94.3 bits (235), Expect = 3e-22
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)
Query: 24 TGSHPLTSDDLKGTPALITLLLVNNNITHIHENAF----PPTIRKLHVGFNNLTSL-NNS 78
S ++ L L N+ ++ F + L + +NNL + N+S
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267
Query: 79 LRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 137
L L + FL N ++ L L L ++ L ++++ +
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------------FTKQSIS 313
Query: 138 NNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM---NS 193
+ +D + L L+ NM+ N I ++ + F L NL +SL N+ + N
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNE 373
Query: 194 SLSGL--TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 243
+ L + L L L+ N++++ D L L +DL N+I + T E
Sbjct: 374 TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Score = 91.2 bits (227), Expect = 3e-21
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 83 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLGSLYANNNRI 141
++ +L + L + + +L + NQL L ++ +SQL SL N I
Sbjct: 4 VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 142 TSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLT 199
+ L L + L L+V N+ N+++ + F NL + L +N I + N+
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L L LSHN L+ L L+ L+ + LS NKI
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 110 bits (277), Expect = 8e-29
Identities = 43/199 (21%), Positives = 83/199 (41%), Gaps = 8/199 (4%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGT 104
+ ++ I ++ L + N +T + N+ L+ +L L L +N + ++E +
Sbjct: 40 SGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98
Query: 105 LSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDF 161
L L+ L + N L L S + S L L N +L L LTKLQ+ +
Sbjct: 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN 158
Query: 162 N-QITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
T ++R +F L L+ + + + + S SL + +++L L Q L +
Sbjct: 159 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218
Query: 220 RGLKRLRTVDLSYNKINKF 238
+ ++L ++ F
Sbjct: 219 DVTSSVECLELRDTDLDTF 237
Score = 106 bits (266), Expect = 3e-27
Identities = 45/216 (20%), Positives = 81/216 (37%), Gaps = 19/216 (8%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
A+ +L L NN IT+I + ++ L + N + ++ +S L L L L+ N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 95 LKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL----YANNNRITSL-DGLL 148
L +L LS L L + N + L + LFS L L N + T +
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLG-ETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLS 207
GLT L+ +D + + +++ N+ + L Q + + + + L L
Sbjct: 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELR 230
Query: 208 HNQLTEFLLDDI--------RGLKRLRTVDLSYNKI 235
L F ++ R V ++ +
Sbjct: 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266
Score = 104 bits (262), Expect = 1e-26
Identities = 39/224 (17%), Positives = 95/224 (42%), Gaps = 18/224 (8%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSL-RGLTDL 85
+++ DL+ L L+L +N I I E++F ++ L + +N L++L++S + L+ L
Sbjct: 67 ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126
Query: 86 NWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQN-QLEALPSDI-QLFSQLGSLYANNNRI 141
+L L N K+L L+KLQ+L + + + L L + + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186
Query: 142 TSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-------- 192
S L+ + + + Q ++ +++ + L++ + + +
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246
Query: 193 -SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+SL + ++ L + ++ + + L ++ S N++
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQL 289
Score = 78.2 bits (193), Expect = 4e-17
Identities = 27/156 (17%), Positives = 56/156 (35%), Gaps = 13/156 (8%)
Query: 44 LLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-E 99
+ + T I F + +L + ++L S SL+ + +++ L L+ + L E
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215
Query: 100 GQLGTLSKLQLLVIEQNQLEALPS------DIQLFSQLGSL---YANNNRITSLDGLLRG 150
+ S ++ L + L+ + + + + + + LL
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
++ L NQ+ V F L +L I L N
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 109 bits (275), Expect = 8e-29
Identities = 45/211 (21%), Positives = 81/211 (38%), Gaps = 13/211 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
+ + + L L N ++ I + L++ N L L L+ L
Sbjct: 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLR 83
Query: 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-D 145
L LNNN ++ L ++ L N + + ++Y NN+IT L D
Sbjct: 84 TLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
+++Q ++ N+I V E + L+ ++LQ N I + KL L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTL 196
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
LS N+L + + + + + L NK+
Sbjct: 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226
Score = 102 bits (257), Expect = 4e-26
Identities = 43/204 (21%), Positives = 89/204 (43%), Gaps = 16/204 (7%)
Query: 40 LITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLK 96
+ ++++ + +++L + N L+ + L T L L L++N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQ 155
L +LS L+ L + N ++ L + +L+A NN I+ + +G +
Sbjct: 72 ETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNI- 125
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTE 213
+ N+ITM+R + + + L+ N+I ++N + L +L L +N + +
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 214 FLLDDIRGLKRLRTVDLSYNKINK 237
+ +L+T+DLS NK+
Sbjct: 184 --VKGQVVFAKLKTLDLSSNKLAF 205
Score = 100 bits (252), Expect = 2e-25
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+++ DL L L L +N + + T+R L + N + L + L
Sbjct: 49 ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL 104
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-- 145
NN + + + + + N++ L S++ L N I +++
Sbjct: 105 HAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 205
L L+ N+ +N I V+ L ++ L +N++ M + ++
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L +N+L + +R + L DL N +
Sbjct: 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250
Score = 97.0 bits (242), Expect = 4e-24
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 11/206 (5%)
Query: 33 DLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNN 92
DL+ L TL L NN + + P+I LH NN++ + S ++L N
Sbjct: 75 DLESLSTLRTLDLNNNYVQELLV---GPSIETLHAANNNISRV--SCSRGQGKKNIYLAN 129
Query: 93 NRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSLDGLLR 149
N++ L + G S++Q L ++ N+++ + L L N I + G +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV- 188
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209
KL+ ++ N++ + EFQ+ + ISL+NN++ + +L L + L N
Sbjct: 189 VFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247
Query: 210 QLTEFLLDDIR-GLKRLRTVDLSYNK 234
L D +R++TV K
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVK 273
Score = 88.5 bits (220), Expect = 6e-21
Identities = 28/210 (13%), Positives = 82/210 (39%), Gaps = 14/210 (6%)
Query: 33 DLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLN 91
+L P++ TL NNNI+ + + + +++ N +T L + + + +L L
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 92 NNRLKSLEGQ--LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLR 149
N + ++ + L+ L ++ N + + + ++L +L ++N++ + +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKTLDLSSNKLAFMGPEFQ 211
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209
+ ++ N++ ++ + NL+ L+ N L + +
Sbjct: 212 SAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGT--------LRDFFSKNQ 262
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
++ ++ L + + + +G
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
Score = 83.5 bits (207), Expect = 4e-19
Identities = 28/167 (16%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 74 SLNNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQL 131
+++ + + ++ LK + ++ L + N L + + + F++L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 132 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 191
L ++N + L L+ L+ +++ N + E +++++ NN I+ +
Sbjct: 61 ELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114
Query: 192 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ S +YL++N++T D R++ +DL N+I+
Sbjct: 115 SCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
Score = 67.3 bits (165), Expect = 2e-13
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKL 201
++ + + + ++ + + + Q+ N+ + L N ++ + + L+ TKL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
L LS N L E D+ L LRT+DL+ N + +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV 97
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 110 bits (275), Expect = 9e-28
Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 24/227 (10%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85
L + P L L+L N+++ + F P + L + NNL + ++ + T L
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-----------------F 128
L L++NRL ++ L + L + N L L I +
Sbjct: 174 QNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231
Query: 129 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
+L L +N +T L L ++ +N++ + F + L+ + + NN++
Sbjct: 232 VELTILKLQHNNLTDTAWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Query: 189 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++N + L L LSHN L + + RL + L +N I
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSI 336
Score = 102 bits (255), Expect = 5e-25
Identities = 59/229 (25%), Positives = 95/229 (41%), Gaps = 26/229 (11%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
L + L + L L + I I AF TI+KL++GFN + L + + + L
Sbjct: 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITS 143
L L N L SL G KL L + N LE + D Q + L +L ++NR+T
Sbjct: 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185
Query: 144 LD-----------------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+D L ++ + N I +VR L L LQ+N
Sbjct: 186 VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK---LQHN 242
Query: 187 QITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+T + L L + LS+N+L + + ++RL + +S N++
Sbjct: 243 NLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290
Score = 99.2 bits (247), Expect = 4e-24
Identities = 38/209 (18%), Positives = 85/209 (40%), Gaps = 13/209 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+ D + T +L L L +N +TH+ + P ++ +V +N L++L + L
Sbjct: 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIP-SLFHANVSYNLLSTLAI----PIAVEEL 216
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GL 147
++N + + G +L +L ++ N L + L + + N + +
Sbjct: 217 DASHNSINVVRG--PVNVELTILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKIMYHP 273
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
+ +L+ + N++ + Q + L + L +N + + + +L LYL
Sbjct: 274 FVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
HN + + L+ + LS+N +
Sbjct: 333 HNSIVTL---KLSTHHTLKNLTLSHNDWD 358
Score = 98.1 bits (244), Expect = 1e-23
Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 18/207 (8%)
Query: 43 LLLVNNNITHIHENAFP-------PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
+ + +I ++ + + + + + L L + L LN+ +
Sbjct: 27 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ 86
Query: 95 LKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLD-GLLRGL 151
++ ++ +Q L + N + LP + Q L L N ++SL G+
Sbjct: 87 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
KL +M N + + D FQ +L ++ L +N++T + LS + L + +S+N L
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLL 204
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + + +D S+N IN
Sbjct: 205 ST-----LAIPIAVEELDASHNSINVV 226
Score = 96.9 bits (241), Expect = 3e-23
Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 29/242 (11%)
Query: 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT 73
ID++ + L + N+ + + + L++ +
Sbjct: 32 VHIDMQTQDVYFGFEDITL---NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 88
Query: 74 SL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQ 130
+ + + L++ N ++ L + L +LV+E+N L +LP I +
Sbjct: 89 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148
Query: 131 LGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLD---------- 179
L +L +NN + + D + T LQ + N++T V +L + +
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208
Query: 180 ------SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+ +N I + + +L L L HN LT+ + L VDLSYN
Sbjct: 209 IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYN 264
Query: 234 KI 235
++
Sbjct: 265 EL 266
Score = 83.4 bits (206), Expect = 2e-18
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 7/179 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L A+ L +N+I + + L + NNLT L L + L+ N
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 264
Query: 94 RLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT 152
L+ + + +L+ L I N+L AL Q L L ++N + ++
Sbjct: 265 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
+L+ +D N I ++ L NL L +N NS + +A +
Sbjct: 325 RLENLYLDHNSIVTLKLSTHHTLKNLT---LSHNDW-DCNSLRALFRNVARPAVDDADQ 379
Score = 51.5 bits (123), Expect = 7e-08
Identities = 15/107 (14%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
Q ++ +D L+ ++D + E L+N ++ +N+ +
Sbjct: 5 QRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64
Query: 190 SM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ + L ++ L L+ Q+ E ++ + + +N I
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 111
Score = 28.4 bits (63), Expect = 2.3
Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 7/220 (3%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLT-----SLNNSLR 80
+ + + L L L L +N+ A + + V + L + L
Sbjct: 333 HNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLC 392
Query: 81 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 140
+ +L + + + Q + + ++ S +Q G + N
Sbjct: 393 CKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNE 452
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG-LT 199
+ Q+ N Q +++ + NL L + + + +L+ T
Sbjct: 453 QLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFT 512
Query: 200 KLAYLYLSHNQLTEFLLDDIRG-LKRLRTVDLSYNKINKF 238
L + T+ + K ++ + K
Sbjct: 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQ 552
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 106 bits (266), Expect = 1e-27
Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 9/204 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
I L ++T +I ++ +++ S+ ++ L ++ LFLN N
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN 78
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
+L ++ L L L L +++N+++ L S ++ +L SL +N I+ ++GL L +
Sbjct: 79 KLTDIKP-LANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDINGL-VHLPQ 135
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
L+ + N+IT + L LD++SL++NQI+ + L+GLTKL LYLS N +++
Sbjct: 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD 192
Query: 214 FLLDDIRGLKRLRTVDLSYNKINK 237
L + GLK L ++L +
Sbjct: 193 --LRALAGLKNLDVLELFSQECLN 214
Score = 102 bits (256), Expect = 3e-26
Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 9/198 (4%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P + V I I + K ++ ++T L ++ + NN+ +KS
Sbjct: 2 PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS 60
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
++G + L + L + N+L + L LG L+ + N++ L L+ L KL+
Sbjct: 61 VQG-IQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENKVKDLSS-LKDLKKLKSL 117
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
+++ N I+ + + +L L+S+ L NN+IT + + LS LTKL L L NQ+++ +
Sbjct: 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--IV 172
Query: 218 DIRGLKRLRTVDLSYNKI 235
+ GL +L+ + LS N I
Sbjct: 173 PLAGLTKLQNLYLSKNHI 190
Score = 102 bits (255), Expect = 4e-26
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 7/202 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
++ ++ N++I + + P + KL + N LT + L L +L WLFL+ N
Sbjct: 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++K L L L KL+ L +E N + + + + QL SLY NN+IT + L LTK
Sbjct: 101 KVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVL-SRLTK 157
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
L +++ NQI+ + L L ++ L N I+ + +L+GL L L L +
Sbjct: 158 LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 214
Query: 214 FLLDDIRGLKRLRTVDLSYNKI 235
++ L TV + +
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSL 236
Score = 77.8 bits (192), Expect = 3e-17
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 4/162 (2%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
L L L L N + + ++ L + N ++ +N L L L L+L
Sbjct: 84 KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLG 142
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
NN++ + L L+KL L +E NQ+ + + ++L +LY + N I+ L L GL
Sbjct: 143 NNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRAL-AGL 199
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 193
L V + + + NL +++ + + +
Sbjct: 200 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241
Score = 77.4 bits (191), Expect = 4e-17
Identities = 32/151 (21%), Positives = 66/151 (43%), Gaps = 8/151 (5%)
Query: 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 147
+K + ++ +++ + + + + ANN+ I S+ G+
Sbjct: 7 TITVPTPIKQIFS-DDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQGI 64
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
+ L + ++ N++T + NL NL + L N++ + SSL L KL L L
Sbjct: 65 -QYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120
Query: 208 HNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
HN +++ ++ + L +L ++ L NKI
Sbjct: 121 HNGISD--INGLVHLPQLESLYLGNNKITDI 149
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 101 bits (255), Expect = 3e-27
Identities = 24/151 (15%), Positives = 55/151 (36%), Gaps = 1/151 (0%)
Query: 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP 122
KL + LT L ++ L + + L L L+ +G L + L +L L
Sbjct: 7 SKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLK 66
Query: 123 SDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 182
+ + + L +T L + L + + ++T + + L +
Sbjct: 67 AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTEL-KAAVGELPEKSKLQ 125
Query: 183 LQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
++T + +++ L + + +LT+
Sbjct: 126 EIYQELTQLKAAVGELPDQSKQQQIYQELTD 156
Score = 98.7 bits (247), Expect = 5e-26
Identities = 23/154 (14%), Positives = 55/154 (35%), Gaps = 2/154 (1%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
L + + L L L+ +G L + L +L L + + + L +
Sbjct: 3 LPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQEL 62
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 201
T L + L + + ++T + + L + ++T + +++ L +
Sbjct: 63 TRLKAAVGELPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQELTELKAAVGELPEK 121
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ L + +LT+ L + L Y ++
Sbjct: 122 SKLQEIYQELTQ-LKAAVGELPDQSKQQQIYQEL 154
Score = 88.7 bits (221), Expect = 3e-22
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 12/168 (7%)
Query: 38 PALITLLLVNNNITHIHENAFPPTI------RKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
P L + +T + + KL + LT L ++ L + + L
Sbjct: 4 PEKSKLQEIYQELTRL-----KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 58
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
L L+ +G L + L +L L + + + L +T L + L
Sbjct: 59 YQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTELKAAVGEL 118
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
+ + ++T ++ L + ++T + ++ L
Sbjct: 119 PEKSKLQEIYQELTQLK-AAVGELPDQSKQQQIYQELTDLKTAFERLG 165
Score = 87.9 bits (219), Expect = 6e-22
Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 2/133 (1%)
Query: 103 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 162
G L + L +L L + + + L +T L + L + +
Sbjct: 1 GELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQ 60
Query: 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 222
++T + + L + ++T + +++ L + + L + +LTE L + L
Sbjct: 61 ELTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTE-LKAAVGEL 118
Query: 223 KRLRTVDLSYNKI 235
+ Y ++
Sbjct: 119 PEKSKLQEIYQEL 131
Score = 58.6 bits (143), Expect = 4e-11
Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ 210
L + + ++T ++ L + ++T + +++ L + + L + +
Sbjct: 3 LPEKSKLQEIYQELTRLK-AAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQE 61
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKINKF 238
LT L + L + Y ++ +
Sbjct: 62 LTR-LKAAVGELPEKSKLQEIYQELTRL 88
Score = 48.2 bits (116), Expect = 2e-07
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 174 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
L + ++T + +++ L + + L + +LT L + L + Y
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTR-LKAAVGELPEKSKLQEIYQ 60
Query: 234 KIN 236
++
Sbjct: 61 ELT 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 107 bits (270), Expect = 6e-27
Identities = 44/218 (20%), Positives = 82/218 (37%), Gaps = 10/218 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP----PTIRKLHVGFNNLTSLNNSLRGLTD 84
S P+L L L N ++ ++ ++R L + FN ++ + GL +
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400
Query: 85 LNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRI 141
L L ++ LK + +L KL L I + I + L +L N
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 142 TS--LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL 198
L + T L ++ Q+ + F LH L +++ +N + + +S + L
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
Query: 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L+ L S N++ K L +L+ N +
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
Score = 105 bits (264), Expect = 4e-26
Identities = 35/214 (16%), Positives = 80/214 (37%), Gaps = 9/214 (4%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
+D+ +L ++ + P ++ L + N + + L L++L L+
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLP-FLKSLTLTMNKGSISFKKV-ALPSLSYLDLS 358
Query: 92 NNRLKSLE---GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD--G 146
N L + L+ L + N + ++ +L L ++ + +
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYL 204
L KL ++ + + F L +L+++ + N ++ + T L +L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
LS QL + L RL+ +++S+N +
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL 512
Score = 103 bits (259), Expect = 1e-25
Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 10/216 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNN---SLRGLTDL 85
L P L +L L N + + P++ L + N L+ S G L
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA---NNNRIT 142
L L+ N + L +LQ L + + L+ + + F L L +
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLYLDISYTNTK 437
Query: 143 SL-DGLLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLT 199
DG+ GLT L M N + F N NL + L Q+ ++ L
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+L L +SHN L L L T+D S+N+I
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
Score = 98.6 bits (246), Expect = 8e-24
Identities = 43/213 (20%), Positives = 80/213 (37%), Gaps = 12/213 (5%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
+ + L N + + +F ++ L + + ++ + + GL L+ L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 95 LKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL--DGLLRG 150
++S G L+ L+ LV + +L +L S I L L +N I S
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMNSSLSGLTKLAYLYL 206
LT L ++ +N I + ++ Q L S+ + N I + KL L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 207 SHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKF 238
N + ++ ++ L L L +
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244
Score = 93.6 bits (233), Expect = 5e-22
Identities = 40/206 (19%), Positives = 86/206 (41%), Gaps = 31/206 (15%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE 99
IT ++ ++ + ++ P + + + + FN L L + S ++L WL L+ ++++E
Sbjct: 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 100 -GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN 158
L L L++ N +++ G GLT L+
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFS----------------------PGSFSGLTSLENLV 110
Query: 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL 216
++ + L L +++ +N I S + S LT L ++ LS+N + +
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 217 DDIRGLKRLR----TVDLSYNKINKF 238
+D++ L+ ++D+S N I+
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFI 196
Score = 89.3 bits (222), Expect = 1e-20
Identities = 38/230 (16%), Positives = 72/230 (31%), Gaps = 20/230 (8%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ G L L+L N I +F ++ L L SL + + L L
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130
Query: 86 NWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-----QLFSQLGSLYANN 138
L + +N + S + L+ L + + N ++ + + + SL +
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190
Query: 139 NRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSMN----- 192
N I + KL + N + + + QNL L L +
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250
Query: 193 --SSLSGLTKLAY--LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
S + GL + L++ + L + + L+ I
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL 300
Score = 80.5 bits (199), Expect = 1e-17
Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 8/170 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHEN---AFPPTIRKLHVGFNNLTSL-NNSLRGLTD 84
+ S + G L L ++ + + E + L + + N + GLT
Sbjct: 390 IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 85 LNWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRI 141
LN L + N K L + L L + + QLE + + +L L ++N +
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
Query: 142 TSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
LD L L + FN+I + +L +L NN +
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559
Score = 78.2 bits (193), Expect = 7e-17
Identities = 37/227 (16%), Positives = 84/227 (37%), Gaps = 23/227 (10%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF---PPTIRKLHVGFNNLTSLN-NSLRGLTD 84
L S + L L + +N I A+ + + + +N + ++ N L+ L +
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178
Query: 85 LNW----LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--------SDIQLFSQLG 132
L ++ N + ++ Q KL L + N + + + + +
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 133 SLYANNNRITSLD-GLLRGLTKLQV--FNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
+ + + + ++ GL + + F + + +F L N+ ++SL I
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298
Query: 190 SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ + K L + QL +F L L+++ L+ NK +
Sbjct: 299 YL-EDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGS 341
Score = 77.0 bits (190), Expect = 2e-16
Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 24/224 (10%)
Query: 34 LKGTPALITLLLVNNNITHIHENAF------PPTIRKLHVGFNNLTSLNNSLRGLTDLNW 87
L+ + L N I I N P L + N + + + L+
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHE 208
Query: 88 LFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQLEALPS----DIQLFSQLGSLYA----- 136
L L N S ++ L L+ L + + + + + + + L +
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268
Query: 137 NNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL 195
S D L + ++ I + ++ S+S+ Q+ +
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPTL- 325
Query: 196 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
L L L L+ N+ + + L L +DLS N ++ G
Sbjct: 326 -DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSG 366
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 104 bits (261), Expect = 7e-27
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
+ TL +T I + + L + N +T L L+ LT + L L+ N
Sbjct: 37 QADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN 95
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
LK++ + L ++ L + Q+ + + + S L LY + N+IT++ L GLT
Sbjct: 96 PLKNVSA-IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP-LAGLTN 152
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
LQ ++ Q++ + NL L ++ +N+I+ + S L+ L L ++L +NQ+++
Sbjct: 153 LQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISD 209
Query: 214 FLLDDIRGLKRLRTVDLSYNKI 235
+ + L V L+ I
Sbjct: 210 --VSPLANTSNLFIVTLTNQTI 229
Score = 102 bits (256), Expect = 3e-26
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 9/205 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
I + +N+T A I L +T++ ++ L +L L L +N
Sbjct: 15 DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN 73
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++ L L L+K+ L + N L+ + + L + +L + +IT + L GL+
Sbjct: 74 QITDLAP-LKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTSTQITDVTP-LAGLSN 130
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
LQV +D NQIT + L NL +S+ N Q++ + + L+ L+KL L N++++
Sbjct: 131 LQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISD 187
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKF 238
+ + L L V L N+I+
Sbjct: 188 --ISPLASLPNLIEVHLKNNQISDV 210
Score = 82.4 bits (204), Expect = 9e-19
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
LK + L L N + ++ A +I+ L + +T + L GL++L L+L+ N
Sbjct: 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN 139
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++ ++ L L+ LQ L I Q+ L + + S+L +L A++N+I+ + L L
Sbjct: 140 QITNISP-LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISP-LASLPN 196
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
L ++ NQI+ V N NL ++L N IT+
Sbjct: 197 LIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQP 233
Score = 75.5 bits (186), Expect = 3e-16
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
+ G ++ TL L + IT + A ++ L++ N +T+++ L GLT+L +L +
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIG 159
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
N ++ L L LSKL L + N++ + S + L ++ NN+I+ + L
Sbjct: 160 NAQVSDLTP-LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVSPL-ANT 216
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
+ L + + IT NL + + + + + T
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGT 264
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 106 bits (266), Expect = 1e-26
Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 9/207 (4%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
L L +L+ NN I+ I + +L + N L + +L LT+L L L
Sbjct: 193 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLA 251
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
NN++ +L L L+KL L + NQ+ + L + L +L N N++ + + L
Sbjct: 252 NNQISNLAP-LSGLTKLTELKLGANQISNISPLAGL-TALTNLELNENQLEDISP-ISNL 308
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
L + FN I+ + +L L + NN+++ + SSL+ LT + +L HNQ+
Sbjct: 309 KNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI 365
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKINKF 238
++ L + L R+ + L+
Sbjct: 366 SD--LTPLANLTRITQLGLNDQAWTNA 390
Score = 102 bits (256), Expect = 3e-25
Identities = 59/205 (28%), Positives = 100/205 (48%), Gaps = 10/205 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
LK L+ +L+ NN I I A + L + N +T ++ L+ LT+LN L L++N
Sbjct: 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN 144
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
+ + L L+ LQ L + P + + L L ++N+++ + L LT
Sbjct: 145 TISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNKVSDISV-LAKLTN 200
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
L+ NQI+ + L NLD +SL NQ+ + +L+ LT L L L++NQ++
Sbjct: 201 LESLIATNNQISDI--TPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN 257
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKF 238
L + GL +L + L N+I+
Sbjct: 258 --LAPLSGLTKLTELKLGANQISNI 280
Score = 97.0 bits (242), Expect = 2e-23
Identities = 44/205 (21%), Positives = 86/205 (41%), Gaps = 10/205 (4%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
+ +L N+T + L + S++ + L +L + +NN
Sbjct: 20 DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN 78
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
+L + L L+KL +++ NQ+ + + + L L NN+IT +D L+ LT
Sbjct: 79 QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTN 135
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
L + N I+ + L +L +S N L+ LT L L +S N++++
Sbjct: 136 LNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDL--KPLANLTTLERLDISSNKVSD 191
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKF 238
+ + L L ++ + N+I+
Sbjct: 192 --ISVLAKLTNLESLIATNNQISDI 214
Score = 95.8 bits (239), Expect = 5e-23
Identities = 48/201 (23%), Positives = 94/201 (46%), Gaps = 10/201 (4%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
+ TL I I + + +++ N LT + L+ LT L + +NNN++ +
Sbjct: 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT 106
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
L L+ L L + NQ+ + ++ + L L ++N I+ + L GLT LQ +
Sbjct: 107 P-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISAL-SGLTSLQQLSF 163
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
+ NL L+ + + +N+++ + S L+ LT L L ++NQ+++ + +
Sbjct: 164 GNQVTDL---KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISD--ITPL 217
Query: 220 RGLKRLRTVDLSYNKINKFGT 240
L L + L+ N++ GT
Sbjct: 218 GILTNLDELSLNGNQLKDIGT 238
Score = 93.9 bits (234), Expect = 2e-22
Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 7/202 (3%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L L L L N + I A + L + N +++L L GLT L L L N
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTK 153
++ ++ L L+ L L + +NQLE + I L L N I+ + + LTK
Sbjct: 276 QISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPV-SSLTK 332
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
LQ N+++ V NL N++ +S +NQI+ + + L+ LT++ L L+ T
Sbjct: 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQAWTN 389
Query: 214 FLLDDIRGLKRLRTVDLSYNKI 235
++ + TV +
Sbjct: 390 APVNYKANVSIPNTVKNVTGAL 411
Score = 92.0 bits (229), Expect = 1e-21
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 10/197 (5%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ 101
+ + I I + K +G N+T S L + L + +KS++G
Sbjct: 6 ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKSIDG- 63
Query: 102 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 161
+ L+ L + NQL + ++ ++L + NNN+I + L LT L +
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221
NQIT + D +NL NL+ + L +N I+ + S+LSGLT L L + L +
Sbjct: 122 NQITDI--DPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFGNQVTD---LKPLAN 175
Query: 222 LKRLRTVDLSYNKINKF 238
L L +D+S NK++
Sbjct: 176 LTTLERLDISSNKVSDI 192
Score = 80.0 bits (198), Expect = 2e-17
Identities = 36/180 (20%), Positives = 76/180 (42%), Gaps = 5/180 (2%)
Query: 33 DLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNN 92
L G L L L N I++I A + L + N L ++ + L +L +L L
Sbjct: 260 PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF 318
Query: 93 NRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLT 152
N + + + +L+KLQ L N++ + S + + + L A +N+I+ L L LT
Sbjct: 319 NNISDISP-VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPL-ANLT 375
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
++ ++ T + N+ +++ + + +++S ++ N +
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA-PATISDGGSYTEPDITWNLPS 434
Score = 53.0 bits (128), Expect = 2e-08
Identities = 24/134 (17%), Positives = 52/134 (38%), Gaps = 2/134 (1%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
+ L L L NNI+ I + +++L N ++ ++ SL LT++NWL
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAG 361
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
+N++ L L L+++ L + P + + + + N +
Sbjct: 362 HNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDG 420
Query: 152 TKLQVFNMDFNQIT 165
++ +N +
Sbjct: 421 GSYTEPDITWNLPS 434
Score = 45.0 bits (107), Expect = 9e-06
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 1/111 (0%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
+ L L NN ++ + A I L G N ++ L L LT + L LN+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ 385
Query: 94 RLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
+ + V P+ I N +
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436
Score = 38.4 bits (90), Expect = 0.002
Identities = 14/109 (12%), Positives = 27/109 (24%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
L + L +N I+ + A I +L + T+ + + + N
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN 406
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 140
+ I N FSQ ++
Sbjct: 407 VTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 106 bits (266), Expect = 2e-26
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 14/221 (6%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNW 87
L G L L+L N ++ + + P++ L + N L L +L
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 88 LFLNNNRLKSLE---GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITS 143
L L+++ +++ + QL LS LQ L + N+ +L ++ + QL L R+
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 144 LD--GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN----SSLSG 197
D + L L+V N+ + + + F L L ++LQ N N +SL
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474
Query: 198 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L +L L LS L+ LK + VDLS+N++
Sbjct: 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515
Score = 102 bits (257), Expect = 3e-25
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 12/220 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP----PTIRKLHVGFNNLTSL-NNSLRGLT 83
L + L+ L L L +++I ++ L++ +N SL + +
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
Query: 84 DLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 140
L L L RLK + L L++L + + L+ + L L N
Sbjct: 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460
Query: 141 ITSLD----GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196
+ L+ L +L++ + F ++ + + F +L ++ + L +N++TS +
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
K YL L+ N ++ L + L + RT++L N ++
Sbjct: 521 SHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
Score = 101 bits (253), Expect = 1e-24
Identities = 39/242 (16%), Positives = 76/242 (31%), Gaps = 35/242 (14%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDL 85
+ L G AL L + I+ I T+ L++G N+++S+ L
Sbjct: 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155
Query: 86 NWLFLNNNRLKSL-EGQLGTLSKLQLLVI--EQNQLEALPSDIQLFSQLGSLYANNNRIT 142
L NN + L + + +L + L + N + + + SL +
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215
Query: 143 SL---------------------------DGLLRGLTK--LQVFNMDFNQITMVRRDEFQ 173
+ + GL + ++ N+ + + + F
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275
Query: 174 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
L + L ++ + S L GL+ L L LS N+ L + + N
Sbjct: 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 234 KI 235
Sbjct: 336 TK 337
Score = 100 bits (250), Expect = 2e-24
Identities = 35/211 (16%), Positives = 69/211 (32%), Gaps = 10/211 (4%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
+ L N + I F + L + + + ++ + L+ L L N
Sbjct: 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92
Query: 95 LKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL-DGLLRGL 151
L + E L L+ L Q + ++ + L SLY +N I+S+
Sbjct: 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISL--QNNQITSMNSSLSGLTKLAYLYLSHN 209
KL+V + N I + +++ +L ++SL N I + L
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212
Query: 210 QLTEFLLDDIRG--LKRLRTVDLSYNKINKF 238
Q + ++ ++ L
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243
Score = 96.2 bits (240), Expect = 6e-23
Identities = 36/223 (16%), Positives = 72/223 (32%), Gaps = 14/223 (6%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPP----TIRKLHVGFNNLTSLNNSLRGLTDLNWLF 89
T L L NN I ++ + T L++ N++ + L
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208
Query: 90 LNNNRLKSL---EGQLGTLSKLQLLVIEQNQLEALPSDI---QLFSQLGSLYANNNRITS 143
+ + + T+ L L E E + + + S+ + +
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268
Query: 144 LD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKL 201
+ + LQ ++ ++ + L L + L N+ ++ S S L
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327
Query: 202 AYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFGTRNE 243
+L + N L + L+ LR +DLS++ I N
Sbjct: 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370
Score = 95.9 bits (239), Expect = 7e-23
Identities = 38/202 (18%), Positives = 71/202 (35%), Gaps = 28/202 (13%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE- 99
T N + I P + L FN L ++ N + L +L +L L ++ +
Sbjct: 16 TYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
+ +L LV+ N L + + L G L+
Sbjct: 75 DTFQSQHRLDTLVLTANPLIFMA----------------------ETALSGPKALKHLFF 112
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKLAYLYLSHNQLTEFLLDD 218
I+ + N L+S+ L +N I+S+ KL L +N + +D
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 219 IRGLKRLR--TVDLSYNKINKF 238
+ L++ +++L+ N I
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGI 194
Score = 95.5 bits (238), Expect = 1e-22
Identities = 39/211 (18%), Positives = 80/211 (37%), Gaps = 12/211 (5%)
Query: 40 LITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSL---NNSLRGLTDLNWLFLNNNRL 95
++L L N+I I AF + L+ G + + L +
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 96 KSLEGQL---GTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRGL 151
+ + + ++ + ++++ + S+ FS L L ++ L L GL
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHN 209
+ L+ + N+ + + N +L +S++ N L L L L LSH+
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
Query: 210 QLT--EFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + +R L L++++LSYN+
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Score = 88.5 bits (220), Expect = 2e-20
Identities = 38/222 (17%), Positives = 83/222 (37%), Gaps = 12/222 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ D + L TL+L N + + E A P ++ L ++S+ L L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLG--SLYANNNRI 141
L+L +N + S++ + KL++L + N + L D+ Q SL N N I
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMV--RRDEFQNLHNLDSISLQNNQITSMNSSL---S 196
++ Q N Q +V + + + +L + ++ ++ ++
Sbjct: 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + L + + L+ +DL+ +++
Sbjct: 252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Score = 46.9 bits (112), Expect = 3e-06
Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 24 TGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPT--IRKLHVGFNNLTSLNNSLRG 81
+ ++ L+ L L+L +++ I ++AF + + + N LTS +
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521
Query: 82 LTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLE 119
+L L +N + + L LS+ + + + QN L+
Sbjct: 522 HLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 103 bits (258), Expect = 4e-26
Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 30/197 (15%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLNNNRLKSLE 99
L + ++ ++ P L + NNL+ L + LT+L+ L L++N L +
Sbjct: 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFN 158
+ L L ++N + +L + L L L+V
Sbjct: 81 S--EAFVPV--------------------PNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118
Query: 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MNSSLSGLTKLAYLYLSHNQLTEF 214
+ N I +V R+ F+++ L + L NQI+ + + L KL L LS N+L +
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 215 LLDDIRGLKRLRTVDLS 231
L D++ L L
Sbjct: 179 PLTDLQKLPAWVKNGLY 195
Score = 91.8 bits (228), Expect = 7e-22
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 108 LQLLVIEQNQLEALPSDIQL--FSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQI 164
LL + N L L ++ + L SL ++N + + + L+ ++ N +
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 165 TMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEF---LLDDIR 220
+ F +L L+ + L NN I + ++ + +L LYLS NQ++ F L+ D
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN 160
Query: 221 GLKRLRTVDLSYNKI 235
L +L +DLS NK+
Sbjct: 161 KLPKLMLLDLSSNKL 175
Score = 81.8 bits (202), Expect = 3e-18
Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLT 73
NL L E LT+ L +LLL +N++ I AF P +R L + N+L
Sbjct: 50 NLSRLRAEWTPTRLTN--------LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH 101
Query: 74 SL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQL 131
+L L L L L NN + ++ +++LQ L + QNQ+ P ++
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL--IKDG 159
Query: 132 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL--DSISLQNNQIT 189
L KL + ++ N++ + + Q L + + L NN +
Sbjct: 160 NK-----------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
Score = 61.8 bits (150), Expect = 2e-11
Identities = 39/163 (23%), Positives = 57/163 (34%), Gaps = 15/163 (9%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNN----SLRGL 82
L AL LLL NN+I + NAF ++KL++ N ++ L
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 83 TDLNWLFLNNNRLKSL-EGQLGTLSKLQL--LVIEQNQLEALPSDIQLFSQL-----GSL 134
L L L++N+LK L L L L + N LE QLFS S+
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSV 222
Query: 135 YANNNRITSLDGL-LRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+ + L + L FN + + L
Sbjct: 223 MDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLT 265
Score = 49.5 bits (118), Expect = 3e-07
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 177 NLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
+ L +N ++ + + + + LT L L LSHN L + + LR +DLS N
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 235 INKF 238
++
Sbjct: 100 LHTL 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 104 bits (260), Expect = 9e-26
Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 8/207 (3%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL---NNSLRGLTDLNWLFLNNNR 94
+L L +N + P++ L + N L+ + S G T L +L L+ N
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 95 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL--FSQLGSLYANNNRITSL-DGLLRGL 151
+ ++ L +L+ L + + L+ + L L ++ +G+ GL
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 152 TKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
+ L+V M N D F L NL + L Q+ + ++ + L+ L L ++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYNKIN 236
QL L L+ + L N +
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 102 bits (255), Expect = 4e-25
Identities = 37/211 (17%), Positives = 72/211 (34%), Gaps = 9/211 (4%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
D L LVN ++++L N + S L L +L L+
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNKGGNAF-SEVDLPSLEFLDLS 355
Query: 92 NNRLKSLE---GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD--G 146
N L + L+ L + N + + S+ QL L ++ + +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYL 204
+ L L ++ + F L +L+ + + N + L L +L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
LS QL + L L+ ++++ N++
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 94.4 bits (235), Expect = 2e-22
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 12/211 (5%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
+ L L N + H+ +F P ++ L + + ++ + + + L+ L+ L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 95 LKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD--GLLRG 150
++SL G LS LQ LV + L +L + I L L +N I S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMNSSLSGLTKLAYLYL 206
LT L+ ++ N+I + + + LH + S+ L N + + +L L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 207 SHNQLTEFLLDD-IRGLKRLRTVDLSYNKIN 236
+N + ++ I+GL L L +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238
Score = 91.7 bits (228), Expect = 2e-21
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 31/206 (15%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE 99
IT + N I +N P + + L + FN L L + S +L L L+ ++++E
Sbjct: 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 100 -GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN 158
G +LS L L++ N +++L G GL+ LQ
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLA----------------------LGAFSGLSSLQKLV 106
Query: 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL 216
+ + +L L +++ +N I S S LT L +L LS N++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Query: 217 DDIRGLKRLR----TVDLSYNKINKF 238
D+R L ++ ++DLS N +N
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFI 192
Score = 84.4 bits (209), Expect = 6e-19
Identities = 32/204 (15%), Positives = 72/204 (35%), Gaps = 15/204 (7%)
Query: 43 LLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNS-------LRGLTDLNWLFLNNNRL 95
N+ ++A + L + L L+ LT+++ L + +
Sbjct: 236 EFRNEGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 96 KSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 155
+ ++ Q L + + P+ L L +N+ + + L L+
Sbjct: 295 ERVKDFSY-NFGWQHLELVNCKFGQFPTLK--LKSLKRLTFTSNKGGNAFSEV-DLPSLE 350
Query: 156 VFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
++ N ++ +L + L N + +M+S+ GL +L +L H+ L +
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 214 FL-LDDIRGLKRLRTVDLSYNKIN 236
L+ L +D+S+
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTR 434
Score = 82.5 bits (204), Expect = 3e-18
Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 15/231 (6%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAF-----PPTIRKLHVGF 69
L L + E L+G L + + ++ + +
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 70 NNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
+ + + L L N + L L+ L N+ S++ L
Sbjct: 292 VTIERVKD-FSYNFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDL-P 347
Query: 130 QLGSLYANNNRITSLD---GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
L L + N ++ G T L+ ++ FN + + + F L L+ + Q++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406
Query: 187 QITSMN--SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ M+ S L L YL +SH GL L + ++ N
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Score = 78.6 bits (194), Expect = 6e-17
Identities = 47/231 (20%), Positives = 85/231 (36%), Gaps = 21/231 (9%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ + L TL+L N I + AF +++KL NL SL N + L L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126
Query: 86 NWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-----QLFSQLGSLYANN 138
L + +N ++S + L+ L+ L + N+++++ Q+ SL +
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 139 NRITSLDGLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSISLQNNQITSMN----- 192
N + + +L + N ++ V + Q L L+ L + +
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246
Query: 193 --SSLSGLTKLAYLYLSHNQLTEFLLDDI---RGLKRLRTVDLSYNKINKF 238
S+L GL L L +L D I L + + L I +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Score = 76.7 bits (189), Expect = 2e-16
Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 23/231 (9%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN--NSLRGLTD 84
L G +L L+ V N+ + T+++L+V N + S LT+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 85 LNWLFLNNNRLKSL-EGQLGTLSKLQLLVIE----QNQLEALPSDIQLFSQLGSLYANNN 139
L L L++N+++S+ L L ++ LL + N + + +L L NN
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 140 RITS--LDGLLRGLTKLQVFN------MDFNQITMVRRDEFQNLHNLDSISLQNNQI--- 188
+ + ++GL L+V + + + + L NL + +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 189 -TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + LT ++ L + + D + ++L K +F
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQF 319
Score = 71.7 bits (176), Expect = 1e-14
Identities = 47/237 (19%), Positives = 87/237 (36%), Gaps = 36/237 (15%)
Query: 37 TPALITLLLVNNNITHIHENAF-PPTIRKLHVGFNNLTS--LNNSLRGLTDLNWL----- 88
++L L N + I AF + KL + N + + ++GL L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 89 -FLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYA---NNNRIT 142
F N L+ + L L L + L+ DI LF+ L ++ + + I
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 143 SLDGL--LRGLTKLQVFNMDFNQITMVRRDE----------------FQNLHNLDSISLQ 184
+ G L++ N F Q ++ +L +L+ + L
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 185 NNQITSM---NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
N ++ + S G T L YL LS N + + + GL++L +D ++ + +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQM 411
Score = 70.9 bits (174), Expect = 2e-14
Identities = 41/233 (17%), Positives = 78/233 (33%), Gaps = 27/233 (11%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAF------PPTIRKLHVGFNNLTSLNNSLRGLTD 84
+ L L L +N I I+ P L + N + +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 85 LNWLFLNNNRLKS--LEGQLGTLSKLQLLVIEQNQLEALPS----DIQLFSQLGSLYANN 138
L+ L L NN ++ + L+ L++ + + + D L +L
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 139 NRITSLD-------GLLRGLTKLQVFNMDFNQITMVRRDEFQ-NLHNLDSISLQNNQITS 190
R+ LD L LT + F++ I V+ + +L+ ++ + Q +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 191 MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 243
+ L L L + N+ L L +DLS N ++ G ++
Sbjct: 322 LK-----LKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Score = 42.8 bits (101), Expect = 6e-05
Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNIT-HIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTD 84
+ G +L L + N+ + + F + L + L L + L+
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 85 LNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ 130
L L + +N+LKS+ +G L+ LQ + + N + I S+
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 542
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 101 bits (253), Expect = 2e-25
Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 11/208 (5%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFL-NN 92
I L V + I + AF + K+ + N++ + + L L+ + +
Sbjct: 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 93 NRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS-QLGSLY-ANNNRITSL-DGLL 148
N L + L LQ L+I ++ LP ++ S Q L +N I ++
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149
Query: 149 RGLT-KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYL 206
GL+ + + ++ N I + F + NN + + N G + L +
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
S ++ + LK+LR K
Sbjct: 210 SRTRIHSLPSYGLENLKKLRARSTYNLK 237
Score = 100 bits (250), Expect = 4e-25
Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 15/216 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNIT-HIHENAFP--PTIRKLHV-GFNNLTSL-NNSLRGLT 83
+ G L + + N++ I + F P + ++ + NNL + + + L
Sbjct: 45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP 104
Query: 84 DLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN-QLEALPSDI--QLFSQLGSLYANNN 139
+L +L ++N +K L + + LL I+ N + + + L + L+ N N
Sbjct: 105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164
Query: 140 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 197
I + + G ++ D N + + D F + + +I S+ + L
Sbjct: 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224
Query: 198 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
L KL + + L + L L L+Y
Sbjct: 225 LKKLRARSTYNLK----KLPTLEKLVALMEASLTYP 256
Score = 89.5 bits (222), Expect = 4e-21
Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-- 98
L + +T I + P +L L + + G DL + ++ N + +
Sbjct: 13 VFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71
Query: 99 EGQLGTLSKLQLLVIEQ-NQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQ 155
L KL + IE+ N L + + Q L L +N I L D +
Sbjct: 72 ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131
Query: 156 VFNMDFN-QITMVRRDEFQNL-HNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLT 212
+ ++ N I + R+ F L + L N I NS+ +G +N L
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191
Query: 213 EFLLDDIRGLKRLRTVDLSYNKI 235
E D G +D+S +I
Sbjct: 192 ELPNDVFHGASGPVILDISRTRI 214
Score = 62.9 bits (153), Expect = 8e-12
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Query: 137 NNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NS 193
+++T + L R +L ++ ++++ F +L+ I + N + +
Sbjct: 17 QESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73
Query: 194 SLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
S L KL + + N L + + L L+ + +S I
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 96.3 bits (240), Expect = 1e-24
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 25/155 (16%)
Query: 58 FPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQ 115
P TI ++ + N + + + L + L+NN++ L L L LV+
Sbjct: 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
N++ LP L GL LQ+ ++ N+I +R D FQ+L
Sbjct: 90 NKITELPK----------------------SLFEGLFSLQLLLLNANKINCLRVDAFQDL 127
Query: 176 HNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
HNL+ +SL +N++ ++ + S L + ++L+ N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 65.8 bits (161), Expect = 3e-13
Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 44/159 (27%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+ L + L NN I+ + +AF +GL LN L
Sbjct: 47 IPPGAFSPYKKLRRIDLSNNQISELAPDAF---------------------QGLRSLNSL 85
Query: 89 FLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 147
L N++ L + L LQLL++ N++ L
Sbjct: 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR----------------------VDA 123
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+ L L + ++ N++ + + F L + ++ L N
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 62.7 bits (153), Expect = 4e-12
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTE 213
++ N I ++ F L I L NNQI+ + + GL L L L N++TE
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
Query: 214 FLLDDIRGLKRLRTVDLSYNKI 235
GL L+ + L+ NKI
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKI 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 100 bits (250), Expect = 2e-24
Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
+ + + L L N ++ I + L++ N L L L+ L
Sbjct: 25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLR 83
Query: 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-D 145
L LNNN ++ L ++ L N + + ++Y NN+IT L D
Sbjct: 84 TLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEF-QNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
+++Q ++ N+I V E + L+ ++LQ N I + + KL L
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTL 196
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
LS N+L + + + + + L NK+
Sbjct: 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKL 226
Score = 93.8 bits (233), Expect = 3e-22
Identities = 43/205 (20%), Positives = 90/205 (43%), Gaps = 16/205 (7%)
Query: 40 LITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLK 96
+ ++++ + +++L + N L+ + L T L L L++N L
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQ 155
L +LS L+ L + N ++ L + +L+A NN I+ + +G +
Sbjct: 72 ETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNI- 125
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSS--LSGLTKLAYLYLSHNQLTE 213
+ N+ITM+R + + + L+ N+I ++N + + L +L L +N + +
Sbjct: 126 --YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKF 238
+ +L+T+DLS NK+
Sbjct: 184 --VKGQVVFAKLKTLDLSSNKLAFM 206
Score = 93.0 bits (231), Expect = 6e-22
Identities = 38/211 (18%), Positives = 78/211 (36%), Gaps = 12/211 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+++ DL L L L +N + + T+R L + N + L + L
Sbjct: 49 ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETL 104
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSLD-- 145
NN + + + + + N++ L S++ L N I +++
Sbjct: 105 HAANNNISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 205
L L+ N+ +N I V+ L ++ L +N++ M + ++
Sbjct: 163 ELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L +N+L + +R + L DL N +
Sbjct: 221 LRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250
Score = 91.1 bits (226), Expect = 2e-21
Identities = 26/206 (12%), Positives = 55/206 (26%), Gaps = 6/206 (2%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
L L L N I + ++ L + N L + + + W+ L NN+L
Sbjct: 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL-LRGLTKLQV 156
+E L L+ + N + L G T +
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Query: 157 FNMDFNQITMVRRDEFQNLHNLDS-----ISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
+ + L L +S Q ++ + + + Q
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKINK 237
+ + T++ +++
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDE 374
Score = 91.1 bits (226), Expect = 3e-21
Identities = 25/209 (11%), Positives = 74/209 (35%), Gaps = 6/209 (2%)
Query: 33 DLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLN 91
+L P++ TL NNNI+ + + + +++ N +T L + + + +L L
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQ-GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152
Query: 92 NNRLKSLEGQ--LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLR 149
N + ++ + L+ L ++ N + + + ++L +L ++N++ + +
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF-AKLKTLDLSSNKLAFMGPEFQ 211
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209
+ ++ N++ ++ + NL+ L+ N ++
Sbjct: 212 SAAGVTWISLRNNKLVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + +
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDL 299
Score = 74.9 bits (184), Expect = 1e-15
Identities = 29/167 (17%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 74 SLNNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQL 131
+++ + + ++ LK + ++ L + N L + + + F++L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 132 GSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 191
L ++N + L L+ L+ +++ N + E +++++ NN I+ +
Sbjct: 61 ELLNLSSNVLYETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114
Query: 192 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
S S +YL++N++T D R++ +DL N+I+
Sbjct: 115 --SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159
Score = 62.6 bits (152), Expect = 1e-11
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLTKL 201
++ + + + ++ + + + Q+ N+ + L N ++ ++ + L+ TKL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
L LS N L E D+ L LRT+DL+ N + +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLV 97
Score = 58.7 bits (142), Expect = 3e-10
Identities = 20/209 (9%), Positives = 48/209 (22%), Gaps = 32/209 (15%)
Query: 38 PALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLK 96
L TL L +N + + + + + N L + +LR +L L N
Sbjct: 191 AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLF---------------------------- 128
+ ++ + + ++ L +
Sbjct: 251 CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL 310
Query: 129 --SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+ L + L+ + + + Q V ++ +
Sbjct: 311 KRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKK 370
Query: 187 QITSMNS-SLSGLTKLAYLYLSHNQLTEF 214
+ S +L E
Sbjct: 371 ALDEQVSNGRRAHAELDGTLQQAVGQIEL 399
Score = 27.1 bits (60), Expect = 5.6
Identities = 13/107 (12%), Positives = 29/107 (27%), Gaps = 4/107 (3%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
+ A ITL + N + L ++ + L
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQ 410
Query: 87 WL--FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQL 131
L + +E Q + ++ + Q++ L + +L
Sbjct: 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKL 457
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 99.7 bits (249), Expect = 3e-24
Identities = 37/249 (14%), Positives = 75/249 (30%), Gaps = 27/249 (10%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTS 74
+ L D + + LV+ I + + ++ + L +
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 75 L--------------------NNSLRGLTDLNWLFLNNNRLKSLE---GQLGTLSKLQLL 111
S L L +L L+ N L + L+ L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD--GLLRGLTKLQVFNMDFNQITMVRR 169
+ N + + S+ QL L ++ + + + L L ++ +
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 170 DEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
F L +L+ + + N + L L +L LS QL + L L+
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 228 VDLSYNKIN 236
+++S+N
Sbjct: 499 LNMSHNNFF 507
Score = 95.5 bits (238), Expect = 1e-22
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 8/205 (3%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL---NNSLRGLTDLNWLFLNNNRLK 96
L L +N + P++ L + N L+ + S G T L +L L+ N +
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEAL--PSDIQLFSQLGSLYANNNRITSL-DGLLRGLTK 153
++ L +L+ L + + L+ + S L L ++ +G+ GL+
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446
Query: 154 LQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
L+V M N D F L NL + L Q+ + ++ + L+ L L +SHN
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 212 TEFLLDDIRGLKRLRTVDLSYNKIN 236
+ L L+ +D S N I
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIM 531
Score = 92.0 bits (229), Expect = 1e-21
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 12/214 (5%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNR 94
+ L L N + H+ +F P ++ L + + ++ + + + L+ L+ L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 95 LKSLE-GQLGTLSKLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRITSL--DGLLRG 150
++SL G LS LQ LV + L +L + I L L +N I S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 151 LTKLQVFNMDFNQITMVRRDEFQNLHNLD----SISLQNNQITSMNSSLSGLTKLAYLYL 206
LT L+ ++ N+I + + + LH + S+ L N + + +L L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207
Query: 207 SHNQLTEFLLDD-IRGLKRLRTVDLSYNKINKFG 239
+N + ++ I+GL L L + G
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241
Score = 85.5 bits (212), Expect = 2e-19
Identities = 41/193 (21%), Positives = 72/193 (37%), Gaps = 9/193 (4%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSL--NNSLRGLTDL 85
S GT +L L L N + + N + L +NL + + L +L
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 86 NWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA--LPSDIQLFSQLGSLYANNNRIT 142
+L +++ + G LS L++L + N + LP L L + ++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 143 SLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL--SGLT 199
L L+ LQV NM N + ++ L++L + N I + +
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 200 KLAYLYLSHNQLT 212
LA+L L+ N
Sbjct: 544 SLAFLNLTQNDFA 556
Score = 85.5 bits (212), Expect = 2e-19
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 31/206 (15%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE 99
IT + N I +N P + + L + FN L L + S +L L L+ ++++E
Sbjct: 10 ITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE 68
Query: 100 -GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN 158
G +LS L L++ N +++L G GL+ LQ
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLAL----------------------GAFSGLSSLQKLV 106
Query: 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTEFLL 216
+ + +L L +++ +N I S S LT L +L LS N++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166
Query: 217 DDIRGLKRLR----TVDLSYNKINKF 238
D+R L ++ ++DLS N +N
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFI 192
Score = 83.5 bits (207), Expect = 1e-18
Identities = 32/200 (16%), Positives = 72/200 (36%), Gaps = 15/200 (7%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSLNNS-------LRGLTDLNWLFLNNNRLKSLE 99
N+ ++A + L + L L+ LT+++ L + ++ ++
Sbjct: 240 EGNLEKFDKSALEG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
Q L + + P+ L L +N+ + + L L+ ++
Sbjct: 299 -DFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDL 354
Query: 160 DFNQITM--VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFL-L 216
N ++ +L + L N + +M+S+ GL +L +L H+ L +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414
Query: 217 DDIRGLKRLRTVDLSYNKIN 236
L+ L +D+S+
Sbjct: 415 SVFLSLRNLIYLDISHTHTR 434
Score = 79.3 bits (196), Expect = 3e-17
Identities = 39/234 (16%), Positives = 74/234 (31%), Gaps = 15/234 (6%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP-----PTIRKLHVGF 69
L L + E L+G L + + ++ + +
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291
Query: 70 NNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
+ + + L L N + L L+ L N+ S++ L
Sbjct: 292 VTIERVKD-FSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNKGGNAFSEVDL-P 347
Query: 130 QLGSLYANNNRITSLD---GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
L L + N ++ G T L+ ++ FN + + + F L L+ + Q++
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHS 406
Query: 187 QITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ M S L L YL +SH GL L + ++ N +
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Score = 78.5 bits (194), Expect = 6e-17
Identities = 41/231 (17%), Positives = 85/231 (36%), Gaps = 23/231 (9%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN--NSLRGLTD 84
L G +L L+ V N+ + T+++L+V N + S LT+
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 85 LNWLFLNNNRLKSLEGQ-LGTLSKLQLLVIE----QNQLEALPSDIQLFSQLGSLYANNN 139
L L L++N+++S+ L L ++ LL + N + + +L L NN
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 140 RIT--SLDGLLRGLTKLQVFNM------DFNQITMVRRDEFQNLHNLDSISLQNNQIT-- 189
+ + ++GL L+V + + + + + L NL + +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 190 --SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + LT ++ L + + D + ++L K +F
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQF 319
Score = 77.4 bits (191), Expect = 1e-16
Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 21/228 (9%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL-NNSLRGLTDLNW 87
+ L TL+L N I + AF +++KL NL SL N + L L
Sbjct: 69 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128
Query: 88 LFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEAL-PSDIQLFSQLG----SLYANNNR 140
L + +N ++S + L+ L+ L + N+++++ +D+++ Q+ SL + N
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITM-VRRDEFQNLHNLDSISLQNNQITSMN------- 192
+ + +L + N ++ V + Q L L+ L + +
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248
Query: 193 SSLSGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNKINK 237
S+L GL L L + ++D L + + L I +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296
Score = 68.5 bits (168), Expect = 2e-13
Identities = 40/228 (17%), Positives = 69/228 (30%), Gaps = 25/228 (10%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAF------PPTIRKLHVGFNNLTSLNNSLRGLTD 84
+ L L L +N I I+ P L + N + +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 85 LNWLFLNNNRL--KSLEGQLGTLSKLQLLVIEQNQLEALPS----DIQLFSQLGSLYANN 138
L+ L L NN ++ + L+ L++ + + + D L +L
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 139 NRITSLD-------GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 191
R+ LD L LT + F++ I V +F + L N +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ- 318
Query: 192 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
L + L+ L L +DLS N ++ G
Sbjct: 319 ---FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Score = 42.7 bits (101), Expect = 6e-05
Identities = 22/146 (15%), Positives = 38/146 (26%), Gaps = 27/146 (18%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDL 85
D L L L + + AF L+ L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN---------------------SLSSL 496
Query: 86 NWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNNRIT 142
L +++N SL L+ LQ+L N + S L L N
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 143 ---SLDGLLRGLTKLQVFNMDFNQIT 165
L+ + + ++ ++
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERME 582
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 99 bits (249), Expect = 3e-24
Identities = 38/233 (16%), Positives = 83/233 (35%), Gaps = 26/233 (11%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNW 87
+ L L L N I I E+ + L N L + + + + +
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648
Query: 88 LFLNNNRLKSLEGQLGT------LSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNR 140
+ + N++ S + + + N+++ P+++ S + ++ +NN
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 141 ITSL--------DGLLRGLTKLQVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSM 191
+TS+ DG + L ++ FN++T + D L L ++ + N +S
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Query: 192 NSSLSGLTKLAYLYLSH------NQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ ++L + H N++ I L + + N I K
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV 821
Score = 99.2 bits (247), Expect = 7e-24
Identities = 35/214 (16%), Positives = 78/214 (36%), Gaps = 23/214 (10%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
D L P L +L + N + + T L + + ++
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQ------------LKADWTRLADDEDTGPKIQIFYMG 556
Query: 92 NNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLL 148
N L+ L + KL LL N++ L + +L L + N+I + +
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFC 615
Query: 149 RGLTKLQVFNMDFNQITMV-RRDEFQNLHNLDSISLQNNQITSMNSSLSG------LTKL 201
+++ N++ + ++++ + S+ N+I S ++S
Sbjct: 616 AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ + LS+N++ +F + + T+ LS N +
Sbjct: 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Score = 96.9 bits (241), Expect = 3e-23
Identities = 32/227 (14%), Positives = 72/227 (31%), Gaps = 26/227 (11%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPP-------TIRKLHVGFNNLTSL-NNSLRGLTDL 85
K + ++ N I N + + +N + + +
Sbjct: 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
Query: 86 NWLFLNNNRLKSLE--------GQLGTLSKLQLLVIEQNQLEALPSDIQL--FSQLGSLY 135
+ + L+NN + S+ G L + + N+L +L D + L ++
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMD 759
Query: 136 ANNNRITSLDGLLRGLTKLQVFN------MDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
+ N +S ++L+ F + N+I +L + + +N I
Sbjct: 760 VSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819
Query: 190 SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
++ L +L L ++ N + + L Y+K
Sbjct: 820 KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
Score = 91.1 bits (226), Expect = 4e-21
Identities = 39/252 (15%), Positives = 76/252 (30%), Gaps = 34/252 (13%)
Query: 16 NLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL 75
+ G LT D + I + + + ++ + +
Sbjct: 358 SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417
Query: 76 NNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-------- 127
R + NR+ + + L+KLQ++ + +
Sbjct: 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477
Query: 128 ---------FSQLGSLY----ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR----- 169
+S L L N +T L L L +LQ N+ N+ +
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537
Query: 170 ----DEFQNLHNLDSISLQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLK 223
D+ + + N + ++SL + KL L HN++ L+
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LEAFGTNV 595
Query: 224 RLRTVDLSYNKI 235
+L + L YN+I
Sbjct: 596 KLTDLKLDYNQI 607
Score = 81.1 bits (200), Expect = 9e-18
Identities = 38/205 (18%), Positives = 72/205 (35%), Gaps = 23/205 (11%)
Query: 40 LITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--------NNSLRGLTDLNWLF 89
T+ L N I F I + + N +TS+ + + + L +
Sbjct: 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734
Query: 90 LNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY-------ANNNR 140
L N+L SL + + TL L + + N + P+ SQL + N
Sbjct: 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN-SSLSGLT 199
+ + L + N I V L+ LD + +N S++ +S+
Sbjct: 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADNPNISIDVTSVCPYI 851
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKR 224
+ L +++ + D G++R
Sbjct: 852 EAGMYVLLYDKTQDIRGCDALGIER 876
Score = 79.1 bits (195), Expect = 4e-17
Identities = 31/225 (13%), Positives = 65/225 (28%), Gaps = 24/225 (10%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVG----------FNNLTSLNNSLR 80
D + L L ++ T + + L
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 81 GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 140
L N +K ++ K + N++ + IQ ++L +Y N+
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSP 459
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQ-NNQITSMNSSLSGLT 199
T + + + + + NL +L + L +T + L L
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENE----ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP 515
Query: 200 KLAYLYLSHNQLTEF---------LLDDIRGLKRLRTVDLSYNKI 235
+L L ++ N+ L DD +++ + YN +
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560
Score = 70.3 bits (172), Expect = 4e-14
Identities = 36/183 (19%), Positives = 66/183 (36%), Gaps = 20/183 (10%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPT---------IRKLHVGFNNLTSLNNSL 79
++ + T++L NN +T I EN+ P + + + FN LTSL++
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF 747
Query: 80 R--GLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ-------LEALPSDIQLFSQ 130
R L L+ + ++ N S Q S+L+ I + L P+ I
Sbjct: 748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
L L +N I +D L +L + ++ N + L ++
Sbjct: 808 LIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865
Query: 191 MNS 193
+
Sbjct: 866 IRG 868
Score = 58.7 bits (142), Expect = 3e-10
Identities = 30/194 (15%), Positives = 57/194 (29%), Gaps = 35/194 (18%)
Query: 62 IRKLHVGFNNLT-SLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEA 120
+ L + + +++ LT+L L + G E
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG--------------DEE 370
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180
L D+ + D L LQ ++ +++D +L +
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT-Q 429
Query: 181 ISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-------------------LLDDIRG 221
I N+IT ++ ++ LTKL +Y +++ T
Sbjct: 430 IGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSN 489
Query: 222 LKRLRTVDLSYNKI 235
LK L V+L
Sbjct: 490 LKDLTDVELYNCPN 503
Score = 38.3 bits (89), Expect = 0.002
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 136 ANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--MNS 193
A + + LT+L+V + + T+ R D + ++I
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390
Query: 194 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L +L L + + +++ +K+ + L +I
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISLKDTQIG 431
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 2/93 (2%)
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLY 205
L ++ ++ D L L +S + T LT
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
H + + +RL DL + IN+
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411
Score = 36.4 bits (84), Expect = 0.008
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 3/103 (2%)
Query: 133 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
L I L L N + T+ N + + + +Q
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGV-- 317
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L ++ L L+ + D I L L+ + +
Sbjct: 318 -DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 96.2 bits (240), Expect = 4e-24
Identities = 47/195 (24%), Positives = 94/195 (48%), Gaps = 10/195 (5%)
Query: 43 LLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQL 102
+ I + + K ++G ++T L + + L+ + +N+ ++SL G +
Sbjct: 2 SIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG-M 59
Query: 103 GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFN 162
+ L+ L + NQ+ L S ++ ++L L N NR+ +L+G+ L +D N
Sbjct: 60 QFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGI--PSACLSRLFLDNN 116
Query: 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 222
++ D +L NL+ +S++NN++ S+ L L+KL L L N++T + L
Sbjct: 117 ELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN--TGGLTRL 171
Query: 223 KRLRTVDLSYNKINK 237
K++ +DL+ K
Sbjct: 172 KKVNWIDLTGQKCVN 186
Score = 83.5 bits (207), Expect = 2e-19
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 10/169 (5%)
Query: 70 NNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
+ + GL + L + L LS +Q + + +++L + +Q F+
Sbjct: 7 TPINQVFP-DPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-AGMQFFT 63
Query: 130 QLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
L L+ ++N+I+ L L + LTKL+ +++ N++ + L + L NN++
Sbjct: 64 NLKELHLSHNQISDLSPL-KDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELR 119
Query: 190 SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
SL L L L + +N+L + + L +L +DL N+I
Sbjct: 120 DT-DSLIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNT 165
Score = 67.7 bits (166), Expect = 9e-14
Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 6/182 (3%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLN 91
++ L L L +N I+ + + +L V N L +LN + L+ LFL+
Sbjct: 57 AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG-IPSAC-LSRLFLD 114
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGL 151
NN L+ + L L L++L I N+L+++ + S+L L + N IT+ GL L
Sbjct: 115 NNELRDTDS-LIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGGL-TRL 171
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
K+ ++ + L+ +++ + + S +S +
Sbjct: 172 KKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYYISNGGSYVDGCVLWELP 230
Query: 212 TE 213
Sbjct: 231 VY 232
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 99.5 bits (248), Expect = 4e-24
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 37/243 (15%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
L S + L L L N I I + AF ++ L++ +N L L +++ GL +
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340
Query: 86 NWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
++ L N + + + L KLQ L + N L + I + ++ + N++ +L
Sbjct: 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTL 396
Query: 145 DGL----------------------LRGLTKLQVFNMDFNQITMVRRDE-FQNLHNLDSI 181
+ L + LQ+ ++ N+ + D+ +L+ +
Sbjct: 397 PKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 182 SLQNNQITSMNSS------LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L N + + GL+ L LYL+HN L L LR + L+ N++
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 236 NKF 238
Sbjct: 517 TVL 519
Score = 94.9 bits (236), Expect = 2e-22
Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 21/222 (9%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
L S + G P + + L N+I I + F ++ L + N LT+++ + +
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIP 384
Query: 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANNNRITSL 144
+FL+ N+L +L T + + L +N+LE L + L L N NR +S
Sbjct: 385 DIFLSGNKLVTLPKINLTANLIHLS---ENRLENLDILYFLLRVPHLQILILNQNRFSSC 441
Query: 145 --DGLLRGLTKLQVFNMDFNQI-----TMVRRDEFQNLHNLDSISLQNNQITSM-NSSLS 196
D L+ + N + T + D F+ L +L + L +N + S+ S
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
LT L L L+ N+LT L L +D+S N++
Sbjct: 502 HLTALRGLSLNSNRLTV--LSHNDLPANLEILDISRNQLLAP 541
Score = 94.1 bits (234), Expect = 3e-22
Identities = 44/243 (18%), Positives = 84/243 (34%), Gaps = 30/243 (12%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFP---PTIRKLHVGFNNLTSLN-NSLRG 81
L + AL L L N I ++ + +++ + N + + + L
Sbjct: 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170
Query: 82 LT--DLNWLFLNNNRLKSLE-------GQLGTLSKLQLLVIEQNQLEALPSD-------- 124
L L++ L N L S L++L + N +
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230
Query: 125 -----IQLFSQLGSLYANNNRITSLD-GLLRGLTK--LQVFNMDFNQITMVRRDEFQNLH 176
+ L + + I D GL + ++ ++ + + F+ L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290
Query: 177 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+L ++L N+I + + + GL L L LS+N L E + GL ++ +DL N I
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350
Query: 236 NKF 238
Sbjct: 351 AII 353
Score = 91.0 bits (226), Expect = 3e-21
Identities = 48/243 (19%), Positives = 79/243 (32%), Gaps = 34/243 (13%)
Query: 29 LTSDDLKG--TPALITLLLVNNNITHIHENAFP--------PTIRKLHVGFNNLTSL--- 75
+ +L+ L L N++ + + L V N T
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222
Query: 76 ----------NNSLRGLTDLNWLFLNNNRLKSLEG---QLGTLSKLQLLVIEQNQLEALP 122
SL + + +K + S ++ L + + +L
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282
Query: 123 SDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180
S + + L L N+I + D GL LQV N+ +N + + F L +
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 181 ISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
I LQ N I + + L KL L L N LT I + + + LS NK+
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLP 397
Query: 240 TRN 242
N
Sbjct: 398 KIN 400
Score = 88.7 bits (220), Expect = 2e-20
Identities = 53/256 (20%), Positives = 98/256 (38%), Gaps = 32/256 (12%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNL 72
L L++L + + + + P L L L ++ I +H +AF + +L + F L
Sbjct: 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109
Query: 73 TSL---NNSLRGLTDLNWLFLNNNRLKSLE--GQLGTLSKLQLLVIEQNQLEALPSDI-- 125
+ + R L L L L+ N+++SL G L+ L+ + NQ+ +
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169
Query: 126 -QLFSQLGSLYANNNRITSLDGL-------LRGLTKLQVFNMDFNQITMVRRDEFQN--- 174
L N + S + L++ ++ N T+ F N
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229
Query: 175 ---------LHNLDSISLQNNQITSM-NSSLSGLTK--LAYLYLSHNQLTEFLLDDIRGL 222
H++ + I ++ +GL + + +L LSH + L
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 223 KRLRTVDLSYNKINKF 238
K L+ ++L+YNKINK
Sbjct: 290 KDLKVLNLAYNKINKI 305
Score = 88.3 bits (219), Expect = 3e-20
Identities = 46/229 (20%), Positives = 74/229 (32%), Gaps = 31/229 (13%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLNNN 93
LLL N I + ++FP ++ L +G + R L +L L L ++
Sbjct: 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83
Query: 94 RLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLD--GL 147
++ L L L L + L F L +L + N+I SL
Sbjct: 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITSMNS-------SLSGL 198
L L+ + NQI +V E + L L SL N + S S +
Sbjct: 144 FGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203
Query: 199 TKLAYLYLSHNQLTEFLLD------------DIRGLKRLRTVDLSYNKI 235
L L +S N T + + + ++ I
Sbjct: 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252
Score = 86.4 bits (214), Expect = 1e-19
Identities = 41/180 (22%), Positives = 71/180 (39%), Gaps = 13/180 (7%)
Query: 69 FNNLTSLNNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEAL--PSDI 125
F NLT + + L L L+ N ++++ L +LQLL +
Sbjct: 13 FCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 126 QLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQIT--MVRRDEFQNLHNLDSIS 182
+ L L +++I L +GL L + F ++ +++ F+NL L +
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129
Query: 183 LQNNQITSM--NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL--KRLRTVDLSYNKINKF 238
L NQI S+ + S L L + S NQ+ ++ L K L L+ N +
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189
Score = 86.4 bits (214), Expect = 1e-19
Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 19/207 (9%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL--EGQLG 103
N+T + + T +L + FN + ++ +S L L L L + +
Sbjct: 13 FCNLTQVPQV--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR 70
Query: 104 TLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL---DGLLRGLTKLQVFNM 159
L L++L + +++ L D Q L L ++ DG R L L ++
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDL 130
Query: 160 DFNQITMVR-RDEFQNLHNLDSISLQNNQITSMN-SSLSGLT--KLAYLYLSHNQLTEFL 215
NQI + F L++L SI +NQI + L L L++ L+ N L +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 216 LDDIRGL------KRLRTVDLSYNKIN 236
D L +D+S N
Sbjct: 191 SVDWGKCMNPFRNMVLEILDVSGNGWT 217
Score = 69.1 bits (169), Expect = 1e-13
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 138 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSL 195
R +L + + L + + FN I V F L L + L + +
Sbjct: 10 FYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69
Query: 196 SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L L L L +++ D +GL L + L + ++
Sbjct: 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112
Score = 62.9 bits (153), Expect = 1e-11
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 14/183 (7%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAF---PPTIRKLHVGFNN 71
NLI L + L P L L+L N + + P++ +L +G N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 72 LTSLNNS------LRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSD 124
L + GL+ L L+LN+N L SL G L+ L+ L + N+L L +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN 522
Query: 125 IQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISL 183
L + L L + N++ + + L V ++ N+ I F N N ++++
Sbjct: 523 D-LPANLEILDISRNQLLAPN--PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTI 579
Query: 184 QNN 186
Sbjct: 580 AGP 582
Score = 42.9 bits (101), Expect = 6e-05
Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 11/185 (5%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLT 83
L D +G L L L +N + + F +R L + N LT L+++
Sbjct: 468 ETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PA 526
Query: 84 DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 143
+L L ++ N+L + L +L I N+ + +L + + L N I
Sbjct: 527 NLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI---CECELSTFINWLNHTNVTIAG 581
Query: 144 LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAY 203
+ + + + + + L S+ + ++ +L +T L
Sbjct: 582 PPADIYCVYPDSFSGV---SLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTILTV 638
Query: 204 LYLSH 208
Sbjct: 639 TKFRG 643
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 99.2 bits (247), Expect = 5e-24
Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P L L + +N + + P + KL N LTSL GL +L+ +++N+L S
Sbjct: 141 PGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPMLPSGLQELS---VSDNQLAS 195
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
L L KL N+L +LP+ S L L + NR+TSL L L +L
Sbjct: 196 LPTLPSELYKLWAY---NNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELKEL--- 246
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
+ N++T + L S+S+ NQ+T + SL L+ + L N L+E L
Sbjct: 247 MVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302
Query: 218 DIRGLKRL 225
+R +
Sbjct: 303 ALREITSA 310
Score = 94.2 bits (234), Expect = 3e-22
Identities = 54/199 (27%), Positives = 78/199 (39%), Gaps = 24/199 (12%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L + + +T + + P I L + NNLTSL L L ++ N+L SL
Sbjct: 42 NAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPALPPELRTLE---VSGNQLTSLP 97
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
L +L + L ALP S L L+ N++TSL L GL +L V +
Sbjct: 98 VLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
+ L L NNQ+TS+ SGL + L +S NQL L
Sbjct: 152 QLASLP----ALPSELCKLW---AYNNQLTSLPMLPSGLQE---LSVSDNQLAS-LPTLP 200
Query: 220 RGLKRLRTVDLSYNKINKF 238
L +L N++
Sbjct: 201 SELYKL---WAYNNRLTSL 216
Score = 94.2 bits (234), Expect = 3e-22
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 33/210 (15%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
+ TL++ +NN+T + PP +R L V N LTSL GL +L+ L +L
Sbjct: 63 ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP 120
Query: 100 GQLGTL--------------SKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 145
L L LQ L + NQL +LP+ L S+L L+A NN++TSL
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP 177
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 205
L GL +L ++ NQ+ + L+ L NN++TS+ + SGL + L
Sbjct: 178 MLPSGLQEL---SVSDNQLASL-PTLPSELYKLW---AYNNRLTSLPALPSGLKE---LI 227
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+S N+LT L LK L +S N++
Sbjct: 228 VSGNRLTS-LPVLPSELKEL---MVSGNRL 253
Score = 84.2 bits (208), Expect = 7e-19
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 17/192 (8%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L L NN +T + P +++L V N L SL L L NNRL SL
Sbjct: 163 LCKLWAYNNQLTSL--PMLPSGLQELSVSDNQLASLPTLPSELYKLW---AYNNRLTSLP 217
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
L +L + N+L +LP S+L L + NR+TSL L GL L V+
Sbjct: 218 ALPSGLKELIV---SGNRLTSLPVLP---SELKELMVSGNRLTSLPMLPSGLLSLSVYR- 270
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
NQ+T + + +L + +++L+ N ++ ++ + F +
Sbjct: 271 --NQLTRLP-ESLIHLSSETTVNLEGNPLSERTLQAL--REITSAPGYSGPIIRFDMAGA 325
Query: 220 RGLKRLRTVDLS 231
+ R + L+
Sbjct: 326 SAPRETRALHLA 337
Score = 77.2 bits (190), Expect = 2e-16
Identities = 40/190 (21%), Positives = 70/190 (36%), Gaps = 16/190 (8%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
L L + +N + + P + KL N LTSL GL +L ++ NRL S
Sbjct: 181 SGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELI---VSGNRLTS 235
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
L L +L + N+L +LP S L SL N++T L L L+
Sbjct: 236 LPVLPSELKELMV---SGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTV 289
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
N++ N ++ + + + + I + + + + H ++L+
Sbjct: 290 NLEGNPLSERTLQALREITSAP---GYSGPIIRFDMAGASAPRETRAL--HLAAADWLVP 344
Query: 218 DIRGLKRLRT 227
G
Sbjct: 345 AREGEPAPAD 354
Score = 63.4 bits (154), Expect = 8e-12
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 16/134 (11%)
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 164
+ +L + ++ L LP + + + +L +N +TSL L L L + NQ+
Sbjct: 39 NNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPALPPELRTL---EVSGNQL 93
Query: 165 TMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
T + L L S + ++ + L L++ NQLT L GL+
Sbjct: 94 TSL-PVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLTS-LPVLPPGLQE 145
Query: 225 LRTVDLSYNKINKF 238
L +S N++
Sbjct: 146 L---SVSDNQLASL 156
Score = 54.5 bits (131), Expect = 8e-09
Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 17/128 (13%)
Query: 114 EQNQLEALPSDIQ--LFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRD 170
E A+ ++ L + L + +T+L D L +T L + + + +
Sbjct: 23 ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP----A 78
Query: 171 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
L L+ + NQ+TS+ GL +L+ L L + +
Sbjct: 79 LPPELRTLE---VSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWI 128
Query: 231 SYNKINKF 238
N++
Sbjct: 129 FGNQLTSL 136
Score = 32.6 bits (74), Expect = 0.11
Identities = 14/102 (13%), Positives = 33/102 (32%), Gaps = 2/102 (1%)
Query: 40 LITLLLVNNNITHIHEN-AFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKS 97
L++L + N +T + E+ + +++ N L+ +LR +T R
Sbjct: 263 LLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDM 322
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 139
++ L + A + + +N
Sbjct: 323 AGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDN 364
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 97.7 bits (243), Expect = 1e-23
Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 22/200 (11%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L L N++ + +N PP I L + N L SL L L+ +NRL +L
Sbjct: 61 FSELQLNRLNLSSLPDN-LPPQITVLEITQNALISLPELPASLEYLD---ACDNRLSTLP 116
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
+L L + + NQL LP + L + A+NN++T L L L L ++
Sbjct: 117 ELPASLKHLDV---DNNQLTMLPELP---ALLEYINADNNQLTMLPELPTSLEVL---SV 167
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL----AYLYLSHNQLTEFL 215
NQ+T + + ++L LD + N + S+ + + N++T +
Sbjct: 168 RNNQLTFLP-ELPESLEALD---VSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH-I 222
Query: 216 LDDIRGLKRLRTVDLSYNKI 235
++I L T+ L N +
Sbjct: 223 PENILSLDPTCTIILEDNPL 242
Score = 90.4 bits (224), Expect = 5e-21
Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 19/198 (9%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P + L + N + + E P ++ L N L++L L L+ ++NN+L
Sbjct: 80 PQITVLEITQNALISLPEL--PASLEYLDACDNRLSTLPELPASLKHLD---VDNNQLTM 134
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
L L + + NQL LP L L NN++T L L L L
Sbjct: 135 LPELPALLEYINA---DNNQLTMLPELPT---SLEVLSVRNNQLTFLPELPESLEAL--- 185
Query: 158 NMDFNQITMVRRDEFQNLHNL----DSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
++ N + + H+ + N+IT + ++ L + L N L+
Sbjct: 186 DVSTNLLESLP-AVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244
Query: 214 FLLDDIRGLKRLRTVDLS 231
+ + +
Sbjct: 245 RIRESLSQQTAQPDYHGP 262
Score = 76.9 bits (189), Expect = 2e-16
Identities = 40/198 (20%), Positives = 80/198 (40%), Gaps = 23/198 (11%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEG 100
++++L NN + +N+F TI + ++ N N SL
Sbjct: 1 MSIMLPINNNFSLSQNSFYNTISGTY------ADYFSAWDKWEKQALPGENRNEAVSL-L 53
Query: 101 QLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMD 160
+ +++ L + + L +LP ++ Q+ L N + SL L L L +
Sbjct: 54 KECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELPASLEYL---DAC 108
Query: 161 FNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR 220
N+++ + + +L +LD + NNQ+T + + L + +NQLT L +
Sbjct: 109 DNRLSTL-PELPASLKHLD---VDNNQLTMLPELPALLEY---INADNNQLTM-LPELPT 160
Query: 221 GLKRLRTVDLSYNKINKF 238
L+ L + N++
Sbjct: 161 SLEVL---SVRNNQLTFL 175
Score = 56.9 bits (137), Expect = 1e-09
Identities = 28/191 (14%), Positives = 57/191 (29%), Gaps = 7/191 (3%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDL----NWLFLNNNRL 95
L L + NN +T + E P ++ L V N L SL + NR+
Sbjct: 162 LEVLSVRNNQLTFLPE--LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 96 KSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 155
+ + +L +++E N L + + Y S+ +
Sbjct: 220 THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFL 215
+ + ++ + + + N ++ LS Q+
Sbjct: 280 LADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAA-W 338
Query: 216 LDDIRGLKRLR 226
L+ + LR
Sbjct: 339 LEKLSASAELR 349
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 93.2 bits (232), Expect = 4e-23
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 5/157 (3%)
Query: 59 PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P KL + L +L + + RGLT L WL L+ N+L++L G L++L L + N
Sbjct: 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93
Query: 117 QLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
QL +LP + +QL LY N++ SL G+ LTKL+ ++ NQ+ + F
Sbjct: 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153
Query: 175 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
L NL ++SL NQ+ S+ + + L KL + L NQ
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 90.5 bits (225), Expect = 4e-22
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 10/153 (6%)
Query: 43 LLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE 99
L L + + + + F + L++ +N L +L LT+L L L NN+L SL
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 100 -GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYANNNRITSL-DGLLRGLTKL 154
G L++L L + NQL++LPS + F ++L L N N++ S+ G LT L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGV--FDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
Q ++ NQ+ V F L L +I+L NQ
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 85.5 bits (212), Expect = 3e-20
Identities = 48/176 (27%), Positives = 76/176 (43%), Gaps = 12/176 (6%)
Query: 70 NNLTSLNNSLRGLT--------DLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA 120
++ + L D L L + L +L L+KL L ++ NQL+
Sbjct: 14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 121 LPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 178
L + + ++LG+L NN++ SL G+ LT+L + NQ+ + F L L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133
Query: 179 DSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+ L NQ+ S+ + LT L L LS NQL L +L+T+ L N
Sbjct: 134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 67.4 bits (165), Expect = 1e-13
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
L+++PS I ++ L + + +L D RGLTKL N+D+NQ+ + F +L
Sbjct: 26 LDSVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83
Query: 177 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L ++ L NNQ+ S+ + LT+L LYL NQL L +L+ + L+ N++
Sbjct: 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 96.3 bits (240), Expect = 5e-23
Identities = 42/212 (19%), Positives = 84/212 (39%), Gaps = 18/212 (8%)
Query: 37 TPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNN 93
T + L + + + + ++++ V + + + + + L L +L L+ N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 94 RLKSLEGQ----LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSLDG 146
+ + G LQ LV+ QN L ++ ++ L +L + N +
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 206
+ K++ N+ I +V+ Q L LD + NN + S + L L + LY+
Sbjct: 405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD---VSNNNLDSFSLFLPRLQE---LYI 458
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
S N+L L D L + +S N++
Sbjct: 459 SRNKLKT--LPDASLFPVLLVMKISRNQLKSV 488
Score = 95.9 bits (239), Expect = 5e-23
Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 16/219 (7%)
Query: 27 HPLTSDDLKGTPALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL----NNSLR 80
S + + + N+ + + + ++ L + N + +
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Query: 81 GLTDLNWLFLNNNRLKSLEGQLGT---LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYAN 137
L L L+ N L+S++ L L L I +N +P Q ++ L +
Sbjct: 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLS 418
Query: 138 NNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG 197
+ I + + L+V ++ N + L L + + N++ ++ + S
Sbjct: 419 STGIRVVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDA-SL 471
Query: 198 LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L + +S NQL L L+ + L N +
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
Score = 95.2 bits (237), Expect = 1e-22
Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 11/212 (5%)
Query: 37 TPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNN 93
T A+ +L L N IT+I ++ L + + + ++ ++ L L L L++N
Sbjct: 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 94 RLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNNRITSL-DGL 147
L SL G LS L+ L + N + L LF L +L N + +
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT-SLFPNLTNLQTLRIGNVETFSEIRRID 143
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYL 206
GLT L + + + +++ ++ ++L ++ + L+ + YL L
Sbjct: 144 FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L F + + + + +
Sbjct: 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235
Score = 84.4 bits (209), Expect = 6e-19
Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 16/208 (7%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSL-EG 100
L L N + L + + L + L
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE-----TVTIRRLHIPQFYLFYDLST 304
Query: 101 QLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL----DGLLRGLTKLQ 155
L K++ + +E +++ +P Q L L + N + LQ
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 156 VFNMDFNQITMVRR--DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTE 213
+ N + +++ + L NL S+ + N M S K+ +L LS +
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV 424
Query: 214 FLLDDIRGLKRLRTVDLSYNKINKFGTR 241
+ L +D+S N ++ F
Sbjct: 425 VKTC---IPQTLEVLDVSNNNLDSFSLF 449
Score = 79.4 bits (196), Expect = 3e-17
Identities = 28/220 (12%), Positives = 81/220 (36%), Gaps = 7/220 (3%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDL 85
+ D G +L L + ++ + + I L + + L L+ +
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 145
+L L + L + + ++ + + ++ +D F++L L ++ ++
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES-FNELLKLLRYILELSEVE 257
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYL 204
T + + + ++ +V + + + + +++ S L K+ +
Sbjct: 258 --FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNEG 244
+ ++++ + LK L +DLS N + + +N
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Score = 72.5 bits (178), Expect = 7e-15
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
++PS + + + SL + N+IT + G LR LQV + ++I + D F +
Sbjct: 15 RSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72
Query: 175 LHNLDSISLQNNQITSMNSS-LSGLTKLAYLYLSHNQLTEFLLDD-IRGLKRLRTVDLSY 232
L +L+ + L +N ++S++SS L+ L YL L N + L L+T+ +
Sbjct: 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGN 132
Query: 233 N 233
Sbjct: 133 V 133
Score = 64.7 bits (158), Expect = 2e-12
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 129 SQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
G + TS+ GL + L ++ FN+IT + + + NL + L++++
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTAAMKSL---DLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 188 ITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTRNE 243
I ++ + L L +L LS N L+ L L+ ++L N G +
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 95.9 bits (239), Expect = 6e-23
Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 29/225 (12%)
Query: 40 LITLLLVNNNITHIHENAFPPTI------RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
+ + + NN+ ++ L +N L + L L L N
Sbjct: 307 IQIIYIGYNNLKTFPV---ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363
Query: 94 RLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQL--FSQLGSLYANNNRITSLDG---- 146
++ + G +++ L N+L+ +P+ S + ++ + N I S+DG
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423
Query: 147 ----LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS--------MNSS 194
+ N+ NQI+ ++ F L SI+L N +T N +
Sbjct: 424 PLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483
Query: 195 LSGLTKLAYLYLSHNQLTEFLLD-DIRGLKRLRTVDLSYNKINKF 238
L + L N+LT+ D L L +DLSYN +KF
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528
Score = 91.6 bits (228), Expect = 2e-21
Identities = 33/216 (15%), Positives = 83/216 (38%), Gaps = 31/216 (14%)
Query: 38 PALITLLLVNNNITHIHENAFPPTI----------RKLHVGFNNLTSLN--NSLRGLTDL 85
P + + + N + + +++G+NNL + SL+ + L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL 144
L N+L+ G+ KL L + NQ+ +P++ Q+ +L +N++ +
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392
Query: 145 --DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLA 202
+ ++ + + +N+I S+ ++ + ++
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIG----------------SVDGKNFDPLDPTPFKGINVS 436
Query: 203 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ LS+NQ+++F + L +++L N + +
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472
Score = 90.1 bits (224), Expect = 6e-21
Identities = 41/217 (18%), Positives = 85/217 (39%), Gaps = 17/217 (7%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL-NNNRLKSL 98
L + N+ + + + + L DL + + N L L
Sbjct: 208 LRQFYMGNSPFVAENICEAWENENSEY--AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265
Query: 99 EGQLGTLSKLQLLVIEQNQLEALP---------SDIQLFSQLGSLYANNNRITSL--DGL 147
L L ++QL+ + N+ + +D + ++ +Y N + + +
Sbjct: 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG-LTKLAYLYL 206
L+ + KL + +NQ+ F + L S++L NQIT + ++ G ++ L
Sbjct: 326 LQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSF 384
Query: 207 SHNQLTEF-LLDDIRGLKRLRTVDLSYNKINKFGTRN 242
+HN+L + D + + + +D SYN+I +N
Sbjct: 385 AHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Score = 87.4 bits (217), Expect = 6e-20
Identities = 30/222 (13%), Positives = 65/222 (29%), Gaps = 28/222 (12%)
Query: 40 LITLLLVNNNITHIHENAF---PPTI------RKLHVGFNNLTSL-NNSLRGLTDLNWLF 89
+ + N I + F PT +++ N ++ + L+ +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 90 LNNNRLKSLE--------GQLGTLSKLQLLVIEQNQLEALPSDIQL--FSQLGSLYANNN 139
L N L + L + + N+L L D + L + + N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523
Query: 140 RITSLDGLLRGLTKLQVFNM------DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 193
+ + L+ F + N+ + +L + + +N I +N
Sbjct: 524 SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE 583
Query: 194 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ ++ L + N L + L Y+K
Sbjct: 584 KI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
Score = 85.1 bits (211), Expect = 4e-19
Identities = 34/228 (14%), Positives = 74/228 (32%), Gaps = 32/228 (14%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
+ + + + F I+ S+ S R + +N + +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199
Query: 100 GQLGTLSKLQLLVIEQNQL--------------------EALPSDIQLFSQLGSLY-ANN 138
+ L+KL+ + + + L + N
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259
Query: 139 NRITSLDGLLRGLTKLQVFNMDFNQITMVRRD--------EFQNLHNLDSISLQNNQITS 190
+T L L+ L ++Q+ N+ N+ + + + I + N + +
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319
Query: 191 --MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ +SL + KL L +NQL L +L +++L+YN+I
Sbjct: 320 FPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQIT 366
Score = 83.9 bits (208), Expect = 9e-19
Identities = 39/227 (17%), Positives = 77/227 (33%), Gaps = 28/227 (12%)
Query: 40 LITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLNNNRL 95
L +L L N IT I N + L N L + + ++ ++ + + N +
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 96 KSLEG--------QLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-- 144
S++G + + + NQ+ P ++ S L S+ N +T +
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474
Query: 145 ------DGLLRGLTKLQVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSMNSSLSG 197
+ + L ++ FN++T + D L L I L N + +
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534
Query: 198 LTKLAYLYLSH------NQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ L + + N+ + I L + + N I K
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV 581
Score = 70.8 bits (174), Expect = 2e-14
Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 19/206 (9%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90
D + L L L ++ P I + S + F+
Sbjct: 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGI-------SANMSDEQKQKMRMHYQKTFV 150
Query: 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEA-LPSDIQLFSQLGSLYANNNRITSLDGLLR 149
+ + S L I + + + ++ + + +N IT + +
Sbjct: 151 DYD-------PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVM 203
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209
LTKL+ F M + E N + Q + + L L + + +
Sbjct: 204 RLTKLRQFYMGNSPFVAENICEAWENENSEY----AQQYKTEDLKWDNLKDLTDVEVYNC 259
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYNKI 235
L ++ L ++ ++++ N+
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRG 285
Score = 64.3 bits (157), Expect = 4e-12
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 20/175 (11%)
Query: 40 LITLLLVNNNITHIHENAFP---------PTIRKLHVGFNNLTSLNNSLR--GLTDLNWL 88
L ++ L+ N +T I +N+ + + + FN LT L++ R L L +
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQ-------LEALPSDIQLFSQLGSLYANNNRI 141
L+ N Q S L+ I + L P I L L L +N I
Sbjct: 519 DLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196
++ + + V ++ N + L ++ + +
Sbjct: 579 RKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631
Score = 35.8 bits (83), Expect = 0.010
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 2/91 (2%)
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT--SMNSSLSGLTKLAYLY 205
L ++ +++ + D L L+ ++L ++ G++
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ + R DL + IN
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
Score = 35.4 bits (82), Expect = 0.015
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 174 NLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTV 228
+ + +SL+ + + ++ LT+L L L + F I
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 229 DLSYNKINK 237
K
Sbjct: 139 QKMRMHYQK 147
Score = 33.5 bits (77), Expect = 0.052
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 194 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
SL+ ++ L L + + D I L L + L +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 95.6 bits (238), Expect = 7e-23
Identities = 42/230 (18%), Positives = 77/230 (33%), Gaps = 32/230 (13%)
Query: 38 PALITLLLVNNNITHIHENAF----PPTIRKLHVGFNNLTSLNN---------SLRGLTD 84
L L N + I E L + L +N + T
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 85 LNWLFLNNNRLKSLEG----QLGTLSKLQLLVIEQNQLEALPSDIQLF------------ 128
+ L L+ N K +K+Q L++ + F
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE 273
Query: 129 -SQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
S + + + ++I +L + T L+ + N+I + + F L +L ++L N
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN 333
Query: 187 QITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ S+ + L KL L LS+N + GL L+ + L N++
Sbjct: 334 FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383
Score = 93.7 bits (233), Expect = 3e-22
Identities = 48/201 (23%), Positives = 76/201 (37%), Gaps = 8/201 (3%)
Query: 36 GTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRL 95
++ TL L N F I + L++ N N+ +N
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 96 KSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTK 153
K LE S ++ + ++++ AL + F+ L L N I + D GLT
Sbjct: 270 KGLEA-----SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 212
L N+ N + + F+NL L+ + L N I ++ + S GL L L L NQL
Sbjct: 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Query: 213 EFLLDDIRGLKRLRTVDLSYN 233
L L+ + L N
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTN 405
Score = 89.4 bits (222), Expect = 8e-21
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 19/197 (9%)
Query: 59 PPTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQ 115
P + + + N++ LN S L DL +L + + LS L +L ++
Sbjct: 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 116 NQLEALPSDI-QLFSQLGSLYANNNRITSL---DGLLRGLTKLQVFNMDFNQITMVR-RD 170
NQ L + + L L + + LT L++ + N I ++
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 171 EFQNLHNLDSISLQNNQITSM-NSSLSGLTK--LAYLYLSHNQLTEFLLDDI-------- 219
F N+ + L N++ S+ L L LS L + +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 220 RGLKRLRTVDLSYNKIN 236
+ T+DLS N
Sbjct: 209 FKNTSITTLDLSGNGFK 225
Score = 89.4 bits (222), Expect = 9e-21
Identities = 42/202 (20%), Positives = 77/202 (38%), Gaps = 21/202 (10%)
Query: 42 TLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLNNNRLKS 97
+ L N+I ++E +F ++ L V + NN+ RGL+ L L L+ N+
Sbjct: 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93
Query: 98 L-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNNRITSL--DGLLRGL 151
L G L+ L++L + Q L+ F L SL +N I + +
Sbjct: 94 LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLH--NLDSISLQNNQITSMNS---------SLSGLTK 200
+ V ++ FN++ + ++ N + + L + + MN + T
Sbjct: 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTS 213
Query: 201 LAYLYLSHNQLTEFLLDDIRGL 222
+ L LS N E +
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDA 235
Score = 88.3 bits (219), Expect = 2e-20
Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 35/259 (13%)
Query: 14 ALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNN 71
L + +E +T + ++ +G +LI L L N + AF + L + N
Sbjct: 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN 114
Query: 72 LTSL---NNSLRGLTDLNWLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDI- 125
L N + LT L L L +N +K + + + +L + N+++++ +
Sbjct: 115 LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174
Query: 126 --QLFSQLGSLYANNNRITSLD---------GLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
L ++ + ++ G T + ++ N F +
Sbjct: 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234
Query: 175 LHNLDSI-------------SLQNNQITSM-NSSLSGL--TKLAYLYLSHNQLTEFLLDD 218
I S + N + GL + + LS +++ L
Sbjct: 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294
Query: 219 IRGLKRLRTVDLSYNKINK 237
L + L+ N+INK
Sbjct: 295 FSHFTDLEQLTLAQNEINK 313
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 90.9 bits (226), Expect = 2e-22
Identities = 36/157 (22%), Positives = 63/157 (40%), Gaps = 26/157 (16%)
Query: 59 PPTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQ 115
P +L + N T L + L L + +NN++ +E G S + +++
Sbjct: 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
N+LE + + +GL L+ + N+IT V D F L
Sbjct: 91 NRLENVQH----------------------KMFKGLESLKTLMLRSNRITCVGNDSFIGL 128
Query: 176 HNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
++ +SL +NQIT++ + L L+ L L N
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 77.0 bits (190), Expect = 2e-17
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
L +P I L NNN T L G+ + L +L+ N N+IT + F+
Sbjct: 23 LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80
Query: 176 HNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
++ I L +N++ ++ + GL L L L N++T D GL +R + L N+
Sbjct: 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ 140
Query: 235 I 235
I
Sbjct: 141 I 141
Score = 74.7 bits (184), Expect = 1e-16
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 109 QLLVIEQNQLEALPSDIQL--FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQIT 165
L + N+ L + QL + +NN+IT + +G G + + + N++
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 166 MVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
V+ F+ L +L ++ L++N+IT N S GL+ + L L NQ+T L
Sbjct: 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS 154
Query: 225 LRTVDLSYN 233
L T++L N
Sbjct: 155 LSTLNLLAN 163
Score = 69.7 bits (171), Expect = 1e-14
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 44/157 (28%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90
+ K P L + NN IT I E AF G + +N + L
Sbjct: 50 TGIFKKLPQLRKINFSNNKITDIEEGAF---------------------EGASGVNEILL 88
Query: 91 NNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLR 149
+NRL+++ L L+ L++ N++ + +
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVG----------------------NDSFI 126
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
GL+ +++ ++ NQIT V F LH+L +++L N
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Score = 42.3 bits (100), Expect = 4e-05
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+ KG +L TL+L +N IT + ++F GL+ + L
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRITCVGNDSF---------------------IGLSSVRLL 134
Query: 89 FLNNNRLKSL-EGQLGTLSKLQLLVIEQNQL 118
L +N++ ++ G TL L L + N
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 28.1 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 204 LYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINK 237
L L++N+ T I + L +LR ++ S NKI
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 92.3 bits (230), Expect = 3e-22
Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 14/207 (6%)
Query: 40 LITLLLVNNNITHIH---ENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLK 96
+ E+A P L + L + L+ L + ++ L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY-ANNNRITSL---------DG 146
L + + L+ L + +N L ALP+ I ++L L +T L G
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 147 LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYL 206
+GL LQ +++ I + NL NL S+ ++N+ ++++ ++ L KL L L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLSYN 233
G L+ + L
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDC 263
Score = 82.3 bits (204), Expect = 1e-18
Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 24/216 (11%)
Query: 40 LITLLLVNNNITHIHENAFPPTI------RKLHVGFNNLTSLNNSLRGLTDLNWLFL-NN 92
L + + + + P T+ L + N L +L S+ L L L +
Sbjct: 106 LQHMTIDAAGLMEL-----PDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160
Query: 93 NRLKSL---------EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITS 143
L L G+ L LQ L +E + +LP+ I L SL N+ +++
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220
Query: 144 LDGLLRGLTKLQVFNM-DFNQITMVRRDEFQNLHNLDSISLQN-NQITSMNSSLSGLTKL 201
L + L KL+ ++ + F L + L++ + + ++ + LT+L
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
L L L I L + + + +
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315
Score = 78.4 bits (194), Expect = 3e-17
Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 15/182 (8%)
Query: 68 GFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL 127
G L ++ L + + + Q+ L+A ++
Sbjct: 21 GSTALRPYHDVLSQWQRHYNA---DRNRWHSAWRQANSNNPQIETRTGRALKATADLLED 77
Query: 128 FSQLG--SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185
+Q G +L + + L+ LQ +D + + D Q L++++L
Sbjct: 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLAR 136
Query: 186 NQITSMNSSLSGLTKLAYLYLSH-NQLTEF--------LLDDIRGLKRLRTVDLSYNKIN 236
N + ++ +S++ L +L L + +LTE + +GL L+++ L + I
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196
Query: 237 KF 238
Sbjct: 197 SL 198
Score = 77.3 bits (191), Expect = 7e-17
Identities = 26/185 (14%), Positives = 57/185 (30%), Gaps = 14/185 (7%)
Query: 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLG--TLSKLQLLVIEQNQLEA 120
++ + N + LK+ L T L + L
Sbjct: 36 QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180
P S L + + + L ++ L+ + N + + +L+ L
Sbjct: 96 FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE 154
Query: 181 ISLQ-NNQITS---------MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
+S++ ++T + GL L L L + L I L+ L+++ +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKI 213
Query: 231 SYNKI 235
+ +
Sbjct: 214 RNSPL 218
Score = 47.2 bits (113), Expect = 2e-06
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 14/118 (11%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLH-------VGFNNLTSLNNSLRGLTDLNWLFL-N 91
L +L + N+ ++ + P I L G L + G L L L +
Sbjct: 208 LKSLKIRNSPLSAL-----GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
Query: 92 NNRLKSLEGQLGTLSKLQLLVIEQN-QLEALPSDIQLFSQLGSLYANNNRITSLDGLL 148
+ L +L + L++L+ L + L LPS I + + LD
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 92.1 bits (229), Expect = 1e-21
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+T D+ L TL N IT + + + + +L+ NN+T L+ L L +L
Sbjct: 161 ITKLDVTPQTQLTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFL 217
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLL 148
++N+L ++ + L++L N L L + S+L +L+ + +D L
Sbjct: 218 DCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEID--L 271
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 208
T+L ++ + + L + Q IT ++ LS KL YLYL++
Sbjct: 272 THNTQLI--YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNN 327
Query: 209 NQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+LTE D+ +L+++ I F
Sbjct: 328 TELTEL---DVSHNTKLKSLSCVNAHIQDF 354
Score = 90.9 bits (226), Expect = 3e-21
Identities = 48/210 (22%), Positives = 90/210 (42%), Gaps = 15/210 (7%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+ + L +L N++IT + + KL NN+T+L+ L T+L +L
Sbjct: 33 TDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYL 90
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLL 148
++N+L +L+ + L+KL L + N+L L + L L N +T +D +
Sbjct: 91 ACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--V 144
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 208
T+L + N+ + L ++ N+IT ++ +S L L
Sbjct: 145 SHNTQLTELDCHLNKKITK--LDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDT 200
Query: 209 NQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
N +T+ D+ +L +D S NK+ +
Sbjct: 201 NNITKL---DLNQNIQLTFLDCSSNKLTEI 227
Score = 82.8 bits (205), Expect = 2e-18
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 16/212 (7%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
LT+ D+ L L N +T + + P + L+ N LT ++ + T L L
Sbjct: 97 LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNP-LLTYLNCARNTLTEID--VSHNTQLTEL 153
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLL 148
+ N+ + + ++L L N++ L D+ L L + N IT LD L
Sbjct: 154 DCHLNKKITK-LDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKLD--L 208
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH 208
+L + N++T + + L L N +T ++ +S L+KL L+
Sbjct: 209 NQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQ 263
Query: 209 NQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
L E D+ +L + K
Sbjct: 264 TDLLEI---DLTHNTQLIYFQAEGCRKIKELD 292
Score = 80.1 bits (198), Expect = 1e-17
Identities = 39/200 (19%), Positives = 78/200 (39%), Gaps = 16/200 (8%)
Query: 38 PALITLLLVNNNITHIHENAF--PPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRL 95
+ + + + T+ L +++T + + LT L L +N +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNI 76
Query: 96 KSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQ 155
+L+ L + L L + N+L L + ++L L + N++T LD + L
Sbjct: 77 TTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLT 130
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFL 215
N N +T + + + L + N+ + ++ T+L L S N++TE
Sbjct: 131 YLNCARNTLTEI---DVSHNTQLTELDCHLNKKIT-KLDVTPQTQLTTLDCSFNKITEL- 185
Query: 216 LDDIRGLKRLRTVDLSYNKI 235
D+ K L ++ N I
Sbjct: 186 --DVSQNKLLNRLNCDTNNI 203
Score = 75.5 bits (186), Expect = 7e-16
Identities = 51/231 (22%), Positives = 85/231 (36%), Gaps = 33/231 (14%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
+T D+ L L NNIT + + + L N LT ++ + LT L +
Sbjct: 182 ITELDVSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYF 238
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP--------------------SDIQLF 128
+ N L L+ + TLSKL L Q L + D+
Sbjct: 239 DCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296
Query: 129 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQI 188
+QL L IT LD L KL ++ ++T + + + L S+S N I
Sbjct: 297 TQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHI 351
Query: 189 TSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
SS+ + L + + Q + T+ +S + +++FG
Sbjct: 352 QDF-SSVGKIPALNNNFEAEGQTIT--MPKETLTNNSLTIAVSPDLLDQFG 399
Score = 72.0 bits (177), Expect = 1e-14
Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 68 GFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL 127
F + S L L L +N+ + + G + L+ L L+ N + L D+
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL--DLSQ 83
Query: 128 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
+ L L ++N++T+LD + LTKL N D N++T + + L ++ N
Sbjct: 84 NTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNT 138
Query: 188 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+T ++ +S T+L L N+ L D+ +L T+D S+NKI +
Sbjct: 139 LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185
Score = 51.2 bits (123), Expect = 9e-08
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 14/174 (8%)
Query: 28 PLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNW 87
L DL LI + + L +T L+ L L +
Sbjct: 265 DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVY 322
Query: 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL 147
L+LNN L L+ + +KL+ L ++ S + L + + + ++
Sbjct: 323 LYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKE 379
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 201
L + V D N +I + + ++ L
Sbjct: 380 TLTNNSLTIA---------VSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424
Score = 32.4 bits (74), Expect = 0.13
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL------NNSLRGL 82
LT D+ L +L VN +I P + ++ NNSL
Sbjct: 330 LTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389
Query: 83 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 138
+ L N + G G + + +N P+ F+
Sbjct: 390 VSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGT 445
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 89.3 bits (222), Expect = 9e-21
Identities = 52/196 (26%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L L N ++ + E PP + L N+LT L + L L N L L
Sbjct: 73 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL- 129
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
L+ L + NQLE LP ++Q S L + +NN + L L L + N
Sbjct: 130 -----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN- 182
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
NQ+ + E QNL L +I NN + + L + +N L E L ++
Sbjct: 183 --NQLEEL--PELQNLPFLTAIYADNNSLKKLPDLPLSLES---IVAGNNILEE--LPEL 233
Query: 220 RGLKRLRTVDLSYNKI 235
+ L L T+ N +
Sbjct: 234 QNLPFLTTIYADNNLL 249
Score = 86.2 bits (214), Expect = 1e-19
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 19/201 (9%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P L L + NN + + E ++ + V N+L L + L + NN+L+
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIA---AGNNQLEE 187
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
L +L L L + + N L+ LP L S+ A NN + L L+ L L
Sbjct: 188 LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTI 242
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
D N + + +L+++++++N +T + LT L + L+E
Sbjct: 243 YADNNLLKTL----PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL--- 295
Query: 218 DIRGLKRLRTVDLSYNKINKF 238
L ++ S N+I
Sbjct: 296 ----PPNLYYLNASSNEIRSL 312
Score = 86.2 bits (214), Expect = 1e-19
Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 21/201 (10%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P+L + NN + + E P + ++ N+L L + L + NN L+
Sbjct: 173 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIV---AGNNILEE 229
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
L +L L L + + N L+ LP L +L +N +T L L + LT L V
Sbjct: 230 LP-ELQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSLTFLDVS 285
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
F+ ++ + NL ++ +N+I S+ L + L +S+N+L E
Sbjct: 286 ENIFSGLS-------ELPPNLYYLNASSNEIRSLCDLPPSLEE---LNVSNNKLIELP-- 333
Query: 218 DIRGLKRLRTVDLSYNKINKF 238
RL + S+N + +
Sbjct: 334 --ALPPRLERLIASFNHLAEV 352
Score = 83.1 bits (206), Expect = 1e-18
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 19/201 (9%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P L +L+ N++T + E P +++ L V NNL +L++ L L ++NN+L+
Sbjct: 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLG---VSNNQLEK 145
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
L +L S L+++ ++ N L+ LP L + A NN++ L L L L
Sbjct: 146 L-PELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQN-LPFLTAI 200
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
D N + + +L+SI NN + + L L L +Y +N L
Sbjct: 201 YADNNSLKKL----PDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLP-- 253
Query: 218 DIRGLKRLRTVDLSYNKINKF 238
L +++ N +
Sbjct: 254 --DLPPSLEALNVRDNYLTDL 272
Score = 78.9 bits (195), Expect = 4e-17
Identities = 44/214 (20%), Positives = 80/214 (37%), Gaps = 34/214 (15%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L +++ NN + + E P + ++ N L +L + L LN + +N L L
Sbjct: 217 LESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALN---VRDNYLTDLP 273
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
+L+ L + +N L L L L A++N I SL L L +L N+
Sbjct: 274 ELPQSLTFLDVS---ENIFSGLSE---LPPNLYYLNASSNEIRSLCDLPPSLEEL---NV 324
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF----- 214
N++ + L L N + + L + L++ +N L EF
Sbjct: 325 SNNKLIEL-PALPPRLERLI---ASFNHLAEVPELPQNLKQ---LHVEYNPLREFPDIPE 377
Query: 215 ----------LLDDIRGLKRLRTVDLSYNKINKF 238
L + + L+ + + N + +F
Sbjct: 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411
Score = 78.5 bits (194), Expect = 6e-17
Identities = 48/214 (22%), Positives = 76/214 (35%), Gaps = 31/214 (14%)
Query: 40 LITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRG--------------LTD 84
L L ++N+T + A + + + ++ G
Sbjct: 13 LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72
Query: 85 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
+ L LNN L SL L L N L LP +L L SL +NN + +L
Sbjct: 73 AHELELNNLGLSSLPELPPHLESLVA---SCNSLTELP---ELPQSLKSLLVDNNNLKAL 126
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
L L L + NQ+ + E QN L I + NN + + L ++
Sbjct: 127 SDLPPLLEYL---GVSNNQLEKL--PELQNSSFLKIIDVDNNSLKKLPDLPPSLE---FI 178
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+NQL E L +++ L L + N + K
Sbjct: 179 AAGNNQLEE--LPELQNLPFLTAIYADNNSLKKL 210
Score = 77.0 bits (190), Expect = 2e-16
Identities = 34/197 (17%), Positives = 71/197 (36%), Gaps = 22/197 (11%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L L + N + + E PP + L+ N + SL + L +LN ++NN+L L
Sbjct: 279 LTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRSLCDLPPSLEELN---VSNNKLIELP 333
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
+L+ L+ N L +P L L+ N + + + L++ +
Sbjct: 334 ALPP---RLERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLRMNS- 386
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
+ V + QNL L ++ N + + L ++ ++ +
Sbjct: 387 ---HLAEVP-ELPQNLKQLH---VETNPLREFPDIPESVE---DLRMNSERVVDPYEFAH 436
Query: 220 RGLKRLRTVDLSYNKIN 236
+L ++ +
Sbjct: 437 ETTDKLEDDVFEHHHHH 453
Score = 60.4 bits (147), Expect = 6e-11
Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 15/152 (9%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P+L L + NN + + PP + +L FN+L + + L L+ + N L+
Sbjct: 317 PSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPELPQNLKQLH---VEYNPLRE 371
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
++ L++ + L +P Q L L+ N + + + L++
Sbjct: 372 FPDIPESVEDLRMN----SHLAEVPELPQ---NLKQLHVETNPLREFPDIPESVEDLRMN 424
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQIT 189
+ ++ + L+ +++
Sbjct: 425 S---ERVVDPYEFAHETTDKLEDDVFEHHHHH 453
Score = 43.4 bits (103), Expect = 3e-05
Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 18/130 (13%)
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL------ 175
P ++ + L +++ +T + + + +++
Sbjct: 5 PRNVSN-TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63
Query: 176 -------HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTV 228
+ L N ++S+ L L S N LTE L + + LK L
Sbjct: 64 RLRDCLDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLTE-LPELPQSLKSLLVD 119
Query: 229 DLSYNKINKF 238
+ + ++
Sbjct: 120 NNNLKALSDL 129
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 86.2 bits (214), Expect = 1e-20
Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 13/206 (6%)
Query: 38 PALITLLLVNNNITHIHENAFP--PTIRKLHVGFNN-LTSL-NNSLRGLTDLNWLFL-NN 92
P+ TL L+ ++ I +AF P I +++V + L L ++S L+ + + + N
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 93 NRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLY-ANNNRITSL-DGL 147
L ++ L L L+ L I L+ P +++S L +N +TS+
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 148 LRGLTK-LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGL-TKLAYL 204
+GL + N T V+ F +N +T + + G+ + + L
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDL 230
+S +T + LK L +
Sbjct: 211 DVSQTSVTALPSKGLEHLKELIARNT 236
Score = 77.4 bits (191), Expect = 2e-17
Identities = 41/205 (20%), Positives = 84/205 (40%), Gaps = 13/205 (6%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLN-NNRLKSLE 99
+ +I I PP+ + L + +L ++ +++ L +++ ++++ + L+ LE
Sbjct: 15 DFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE 72
Query: 100 -GQLGTLSKLQLLVIEQNQ-LEALPSDI-QLFSQLGSLYANNNRITSLDGL--LRGLTKL 154
LSK+ + I + L + D + L L N + L +
Sbjct: 73 SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIF 132
Query: 155 QVFNM-DFNQITMVRRDEFQNLHN-LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
+ + D +T + + FQ L N ++ L NN TS+ TKL +YL+ N+
Sbjct: 133 FILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYL 192
Query: 213 EFLLDDI-RGLKR-LRTVDLSYNKI 235
+ D G+ +D+S +
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSV 217
Score = 61.6 bits (150), Expect = 1e-11
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 129 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL-QNNQ 187
Q I + L L + + + F NL N+ I + +
Sbjct: 11 HQEEDFRVTCKDIQRIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 188 ITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKF 238
+ + S S L+K+ ++ + + + ++ D + L L+ + + + F
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120
Score = 58.9 bits (143), Expect = 1e-10
Identities = 22/161 (13%), Positives = 58/161 (36%), Gaps = 11/161 (6%)
Query: 36 GTPALITLLLVNNN-ITHIHENAFP--PTIRKLHVGFNNLTSL--NNSLRGLTDLNWLFL 90
+ + + N +T+I +A P ++ L + L + L +
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137
Query: 91 -NNNRLKSLEGQL--GTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY-ANNNRITSLD- 145
+N + S+ G ++ L + N ++ ++L ++Y N +T +D
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197
Query: 146 GLLRGL-TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185
G+ + + ++ +T + ++L L + +
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
Score = 55.8 bits (135), Expect = 1e-09
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 10/140 (7%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF---PPTIRKLHVGFNN-LTSL-NNSLRGLT 83
+ D LK P L L + N + + L + N +TS+ N+ +GL
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155
Query: 84 -DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQ-LEALPSDI--QLFSQLGSLYANNN 139
+ L L NN S++G +KL + + +N+ L + D ++S L +
Sbjct: 156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215
Query: 140 RITSL-DGLLRGLTKLQVFN 158
+T+L L L +L N
Sbjct: 216 SVTALPSKGLEHLKELIARN 235
Score = 32.3 bits (74), Expect = 0.10
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAF---PPTIRKLHVGFNNLTSL-NNSLRGLTD 84
+ GT L N +T I ++AF L V ++T+L + L L +
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230
Query: 85 LNWLFLNN 92
L + N
Sbjct: 231 L--IARNT 236
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 86.6 bits (215), Expect = 2e-20
Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 59 PPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 118
K ++ ++T + L ++ + NN+ +KS++G + L ++ L + N+L
Sbjct: 18 FAETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKL 75
Query: 119 EALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
+ + +L + L L N++ SL +G+ LT L+ + NQ+ + F L N
Sbjct: 76 HDISALKEL-TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 178 LDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 212
L ++L +NQ+ S+ + LT L L LS+NQL
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
Score = 82.0 bits (203), Expect = 9e-19
Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 5/173 (2%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ 101
L ++T +I ++ +++ S+ ++ L ++ +L L N+L +
Sbjct: 23 KANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI-SA 80
Query: 102 LGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM 159
L L+ L L++ NQL++LP+ + + L L N++ SL DG+ LT L N+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
NQ+ + + F L NL + L NQ+ S+ LT+L L L NQL
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Score = 80.4 bits (199), Expect = 3e-18
Identities = 52/179 (29%), Positives = 93/179 (51%), Gaps = 5/179 (2%)
Query: 36 GTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRL 95
++ ++ N++I + + P +R L +G N L ++ +L+ LT+L +L L N+L
Sbjct: 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQL 97
Query: 96 KSLE-GQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLT 152
+SL G L+ L+ LV+ +NQL++LP + + L L +N++ SL G+ LT
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 153 KLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
L ++ +NQ+ + F L L + L NQ+ S+ + LT L Y++L N
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 83.9 bits (208), Expect = 4e-20
Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 8/196 (4%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ 101
T L + + +I ++ F + +G ++ ++ + + L ++ L N + L G
Sbjct: 6 TGLKASQDNVNIPDSTFKAYLN-GLLGQSSTANITEA--QMNSLTYITLANINVTDLTG- 61
Query: 102 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMD 160
+ ++ L I + I S L L +TS L GLT L + ++
Sbjct: 62 IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 161 FNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIR 220
+ + L ++SI L N + L L +L L + + + + I
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--YRGIE 178
Query: 221 GLKRLRTVDLSYNKIN 236
+L + I
Sbjct: 179 DFPKLNQLYAFSQTIG 194
Score = 67.3 bits (165), Expect = 5e-14
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 10/166 (6%)
Query: 28 PLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNW 87
+T + L + L N N+T + + I+ L + + T+ N + GL++L
Sbjct: 37 NITEAQMNS---LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP-ISGLSNLER 92
Query: 88 LFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLY-ANNNRITSL 144
L + + S + L L+ L LL I + + ++ + I ++ S+ + N IT +
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
L + L +L+ N+ F+ + R ++ L+ + + I
Sbjct: 153 MPL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195
Score = 45.3 bits (108), Expect = 4e-06
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 6/115 (5%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN-NSLRGLTDLNWLFL 90
+ G L L ++ ++T ++ L + + + L +N + L
Sbjct: 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143
Query: 91 N-NNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
+ N + + L TL +L+ L I+ + + I+ F +L LYA + I
Sbjct: 144 SYNGAITDIMP-LKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196
Score = 34.2 bits (79), Expect = 0.023
Identities = 7/64 (10%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 174 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+ L + ++ + + + L Y+ L++ +T+ L I ++ + ++
Sbjct: 21 TFKAYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNI 76
Query: 234 KINK 237
Sbjct: 77 HATN 80
Score = 31.5 bits (72), Expect = 0.16
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 34 LKGTPALITL-LLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNN 92
+ P + ++ L N IT I P ++ L++ F+ + + LN L+ +
Sbjct: 132 INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG-IEDFPKLNQLYAFS 190
Query: 93 NRLKSLE 99
+ +
Sbjct: 191 QTIGGKK 197
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 85.7 bits (212), Expect = 2e-19
Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 14/241 (5%)
Query: 4 FSYFEDGHAVALNLIDLE-PETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--P 60
F +F LN+ +L E + +L+ + N E +
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329
Query: 61 TIRKLHVGFNNLTSLNNS-LRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQL 118
+ + ++ ++ + +L N TL +LQ L++++N L
Sbjct: 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Query: 119 EALPSDIQLFSQLGSLYANNNRITSL-----DGLLRGLTKLQVFNMDFNQIT-MVRRDEF 172
+ + + SL + + SL D + V N+ N +T V R
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
+ LD L NN+I S+ ++ L L L ++ NQL L L+ + L
Sbjct: 450 PKVKVLD---LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Query: 233 N 233
N
Sbjct: 507 N 507
Score = 72.6 bits (178), Expect = 6e-15
Identities = 26/203 (12%), Positives = 68/203 (33%), Gaps = 11/203 (5%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSL- 98
+T+ + + ++ HV +L ++N L+ + +
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345
Query: 99 EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGLLRGLTKLQVF 157
+ S L QN +L +L N + + + +
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL 405
Query: 158 NMDFNQITMVRRDEFQNL----HNLDSISLQNNQITSMNSSLSGLT-KLAYLYLSHNQLT 212
+ + + ++ ++L +N +T S L K+ L L +N++
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--SVFRCLPPKVKVLDLHNNRIM 463
Query: 213 EFLLDDIRGLKRLRTVDLSYNKI 235
+ D+ L+ L+ ++++ N++
Sbjct: 464 S-IPKDVTHLQALQELNVASNQL 485
Score = 70.7 bits (173), Expect = 3e-14
Identities = 37/185 (20%), Positives = 72/185 (38%), Gaps = 7/185 (3%)
Query: 59 PPTIRKLHVGFNNLTSLNNS-LRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN 116
PP + L + N+++ L + L++L L L++NR++SL L+ L + N
Sbjct: 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
+L+ + + L L + N L LTKL + + + +
Sbjct: 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 175 LH-NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
LH + + L + I + + L+L + + F + + L + LS
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 234 KINKF 238
K+N
Sbjct: 229 KLNDE 233
Score = 64.5 bits (157), Expect = 3e-12
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
L +P D+ + +L + N I+ L + L++L+V + N+I + F
Sbjct: 41 RNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98
Query: 175 LHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYN 233
+L+ + + +N++ ++ S + L +L LS N + + L +L + LS
Sbjct: 99 NQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
Query: 234 KINK 237
K +
Sbjct: 157 KFRQ 160
Score = 57.2 bits (138), Expect = 1e-09
Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 18/206 (8%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P L+ + L + T V + N+ N ++ D + LKS
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY--NLTITERIDREEFTYSETALKS 306
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALPSDIQ-LFSQLGSLYANNNRITSL-DGLLRGLTKLQ 155
L + ++ + +F+++ + + + +
Sbjct: 307 L----------MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356
Query: 156 VFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS---SLSGLTKLAYLYLSHNQLT 212
N N T L L ++ LQ N + + ++ L L +S N L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 213 EFLLDDI-RGLKRLRTVDLSYNKINK 237
D + + ++LS N +
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTG 442
Score = 56.4 bits (136), Expect = 2e-09
Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 14/220 (6%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
L D+ L L L +N I + + F + L V N L ++ S + L
Sbjct: 67 LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLR 124
Query: 87 WLFLNNNRLKSL--EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL 144
L L+ N L + G L+KL L + + L L + +
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184
Query: 145 DGLLRGLTKLQVF--NMDFNQITMVRRDEFQNLHNLDSISLQNNQI------TSMNSSLS 196
G L ++ F+ ++ +++ L + L N ++ M
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L ++ + ++ + + Y I
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284
Score = 54.1 bits (130), Expect = 1e-08
Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 4/230 (1%)
Query: 7 FEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLH 66
+ L+ I L+ + + P L LV + + H
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 67 VGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQ 126
+ +N+ + + + L L ++ Q + + + Q P ++
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW---PRPVE 279
Query: 127 LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+ L L + ++ + + ++ L +
Sbjct: 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 187 QITSMNSSLSG-LTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ + +L + N T+ + LKRL+T+ L N +
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 81.1 bits (200), Expect = 9e-18
Identities = 38/204 (18%), Positives = 72/204 (35%), Gaps = 11/204 (5%)
Query: 39 ALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRL 95
AL +V++ + + + + + ++ L +NN L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 96 KSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLF---SQLGSLYANNNRITSL--DGLLR 149
G L++L+ L+++ NQL+ L ++ L L + N ++ G
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209
L NM N +T + + L +N+I S+ + L L L ++ N
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454
Query: 210 QLTEFLLDDIRGLKRLRTVDLSYN 233
QL L L+ + L N
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 73.7 bits (181), Expect = 3e-15
Identities = 35/217 (16%), Positives = 75/217 (34%), Gaps = 12/217 (5%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
LT ++++ T +L T + + + + F + SL+ L+
Sbjct: 225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ-- 282
Query: 89 FLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-D 145
+ ++ S + + + + S L +NN +T
Sbjct: 283 -VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDE--FQNLHNLDSISLQNNQITS--MNSSLSGLTKL 201
LT+L+ + NQ+ + + + +L + + N ++ S L
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 202 AYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L +S N LT+ + + R++ +DL NKI
Sbjct: 402 LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSI 436
Score = 73.4 bits (180), Expect = 4e-15
Identities = 28/201 (13%), Positives = 66/201 (32%), Gaps = 8/201 (3%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGT 104
N + H+ ++ L++ N ++ L + + L+ L L +++NR++ L+
Sbjct: 9 KNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF 67
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFN 162
+L+ L + N+L + L L + N +L +++L+ +
Sbjct: 68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
Query: 163 QITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGL 222
+ +L+ + + L L T I +
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDV 184
Query: 223 KRLRTVDLSYNKINKFGTRNE 243
+L + I N+
Sbjct: 185 SVKTVANLELSNIKCVLEDNK 205
Score = 71.4 bits (175), Expect = 1e-14
Identities = 23/178 (12%), Positives = 66/178 (37%), Gaps = 9/178 (5%)
Query: 65 LHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALP 122
V + + + +++N + + + +S L N L
Sbjct: 281 HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTV 340
Query: 123 SDI-QLFSQLGSLYANNNRITSLD---GLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHN 177
+ ++L +L N++ L + + LQ ++ N ++ + +
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 178 LDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L S+++ +N +T ++ L L N++ + + L+ L+ ++++ N++
Sbjct: 401 LLSLNMSSNILTDTIFR-CLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQL 456
Score = 68.4 bits (167), Expect = 2e-13
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 11/176 (6%)
Query: 45 LVNNNITHIHENAF--PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLEGQ 101
+ +H L N LT + LT+L L L N+LK L
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366
Query: 102 LG---TLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLYANNNRITSLDGLLRGLTKLQV 156
+ LQ L I QN + L SL ++N +T +++V
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-FRCLPPRIKV 425
Query: 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
++ N+I + + L L +++ +NQ+ S+ + LT L ++L N
Sbjct: 426 LDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 64.9 bits (158), Expect = 2e-12
Identities = 35/227 (15%), Positives = 73/227 (32%), Gaps = 16/227 (7%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTS 74
N+ + + S K L NNI + H +
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254
Query: 75 LNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDI-QLFSQLGS 133
N L+G D + LK+L + + + S I ++FS +
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKAL----------SIHQVVSDVFGFPQSYIYEIFSNMNI 304
Query: 134 LYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
+ + ++ + N +T + +L L+++ LQ NQ+ ++
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 193 ---SSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKI 235
+ + L L +S N ++ K L ++++S N +
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Score = 57.2 bits (138), Expect = 9e-10
Identities = 35/257 (13%), Positives = 70/257 (27%), Gaps = 23/257 (8%)
Query: 4 FSYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIR 63
+ + L+ E T +L + N I + +
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191
Query: 64 KLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGT-------------LSKLQL 110
+ N L+ L L N + T + +
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251
Query: 111 LVIEQNQLE---ALPSDIQLFSQLGSLYANNNRITSL----DGLLRGLTKLQVFNMDFNQ 163
I +L+ + L +L + + + + + N +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311
Query: 164 ITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT--EFLLDDIR 220
MV + + NN +T + LT+L L L NQL + +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371
Query: 221 GLKRLRTVDLSYNKINK 237
+K L+ +D+S N ++
Sbjct: 372 QMKSLQQLDISQNSVSY 388
Score = 48.7 bits (116), Expect = 6e-07
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 26 SHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDL 85
S+ D T +L++L + +N +T PP I+ L + N + S+ + L L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEAL 446
Query: 86 NWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ 130
L + +N+LKS+ +G L+ LQ + + N + I S+
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 492
Score = 40.2 bits (94), Expect = 4e-04
Identities = 24/235 (10%), Positives = 59/235 (25%), Gaps = 25/235 (10%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP---PTIRKLHVGFNNLTSLNNSLRGLTDL 85
L T L L L N + ++ L + +L + ++
Sbjct: 81 LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL-----------FSQLGSL 134
+ + L + L + L S + +
Sbjct: 141 SKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200
Query: 135 YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--- 191
+N L L + T ++ N+ N I + L + ++ I+++
Sbjct: 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQ 260
Query: 192 --------NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ S + L L+ + + + + + +
Sbjct: 261 GQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV 315
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 77.4 bits (191), Expect = 1e-17
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 59 PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P L + N+L SL N LT L L+L N+L+SL G L+ L L + N
Sbjct: 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86
Query: 117 QLEALPSDIQLF---SQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 172
QL++LP+ + F +QL L N N++ SL DG+ LT+L+ + NQ+ V F
Sbjct: 87 QLQSLPNGV--FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 173 QNLHNLDSISLQNNQ 187
L +L I L +N
Sbjct: 145 DRLTSLQYIWLHDNP 159
Score = 68.9 bits (169), Expect = 2e-14
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 139
+L L N LKSL G L+ L L + N+L++LP+ + +L + L L + N
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL-TSLTYLNLSTN 86
Query: 140 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSG 197
++ SL +G+ LT+L+ ++ NQ+ + F L L + L NQ+ S+ +
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146
Query: 198 LTKLAYLYLSHNQ 210
LT L Y++L N
Sbjct: 147 LTSLQYIWLHDNP 159
Score = 58.5 bits (142), Expect = 1e-10
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 109 QLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 166
L +E N L++LP+ + + L LY N++ SL +G+ LT L N+ NQ+
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 167 VRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
+ F L L ++L NQ+ S+ + LT+L L L NQL
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 57.8 bits (140), Expect = 2e-10
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
++P+ I + L N + SL +G+ LT L + N++ + F L
Sbjct: 19 RTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 177 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 212
+L ++L NQ+ S+ + + LT+L L L+ NQL
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 77.4 bits (191), Expect = 2e-17
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 59 PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQN 116
P + L++ N +T L L +L L+L +N+L +L G +L++L +L + N
Sbjct: 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98
Query: 117 QLEALPSDIQLF---SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQ 173
QL LPS + F L L+ N++T L + LT L +D NQ+ + F
Sbjct: 99 QLTVLPSAV--FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 174 NLHNLDSISLQNNQ 187
L +L L N
Sbjct: 157 RLSSLTHAYLFGNP 170
Score = 63.6 bits (155), Expect = 2e-12
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
++P+ I +Q LY ++N+IT L G+ L L+ + NQ+ + F +L
Sbjct: 31 HASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 177 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
L + L NQ+T + S++ L L L++ N+LTE L I L L + L N+
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146
Score = 62.8 bits (153), Expect = 4e-12
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 29/155 (18%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDI--QLFSQLGSLYANNN 139
T+ L+L++N++ LE G +L L+ L + NQL ALP + L +QL L N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL-TQLTVLDLGTN 98
Query: 140 RITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGL 198
++T L + F L +L + + N++T + + L
Sbjct: 99 QLTVLPSAV------------------------FDRLVHLKELFMCCNKLTELPRGIERL 134
Query: 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
T L +L L NQL L L L N
Sbjct: 135 THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 44.3 bits (105), Expect = 9e-06
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 40 LITLLLVNNNITHIHENAFPP--TIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLK 96
L L L +N + + F + L +G N LT L +++ L L LF+ N+L
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT 125
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---YANNN 139
L + L+ L L ++QNQL+++P F +L SL Y N
Sbjct: 126 ELPRGIERLTHLTHLALDQNQLKSIPHGA--FDRLSSLTHAYLFGN 169
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 75.9 bits (187), Expect = 4e-17
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 64 KLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS 123
+LH + ++ +L L L L+ N ++ + L + L++L + +N ++ + +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKIEN 87
Query: 124 DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSIS 182
+ L L+ + N+I SL G+ L L+V M N+IT D+ L L+ +
Sbjct: 88 LDAVADTLEELWISYNQIASLSGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146
Query: 183 LQNNQITSMNSSLSGLT 199
L N + + + +
Sbjct: 147 LAGNPLYNDYKENNATS 163
Score = 68.9 bits (169), Expect = 2e-14
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 133 SLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
L+ I +D L L + + N I + + NL +SL N I +
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + L L++S+NQ+ L I L LR + +S NKI +
Sbjct: 87 NLDAVADTLEELWISYNQIAS--LSGIEKLVNLRVLYMSNNKITNW 130
Score = 68.6 bits (168), Expect = 2e-14
Identities = 28/149 (18%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Query: 93 NRLKSLEGQLG-TLSKLQLLVIEQ--NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLR 149
+ ++ E + ++ + + + +E + + + L + N I + L
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LS 67
Query: 150 GLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHN 209
G+ L++ ++ N I + + L+ + + NQI S+ S + L L LY+S+N
Sbjct: 68 GMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNN 125
Query: 210 QLTEFL-LDDIRGLKRLRTVDLSYNKINK 237
++T + +D + L +L + L+ N +
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYN 154
Score = 64.3 bits (157), Expect = 8e-13
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 40 LITLLLVNNNITHIHENAFP-PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSL 98
+ L + I + + L + NN+ +++ L G+ +L L L N +K +
Sbjct: 27 KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLIKKI 85
Query: 99 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLTKLQV 156
E L+ L I NQ+ +L S I+ L LY +NN+IT+ + L L KL+
Sbjct: 86 ENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144
Query: 157 FNMDFNQIT 165
+ N +
Sbjct: 145 LLLAGNPLY 153
Score = 44.3 bits (105), Expect = 9e-06
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 32 DDLKGTPALITLLLVNNNITHI-HENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90
L G L L L N I I + +A T+ +L + +N + SL+ + L +L L++
Sbjct: 64 SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLRVLYM 122
Query: 91 NNNRLKSLEG--QLGTLSKLQLLVIEQNQL 118
+NN++ + +L L KL+ L++ N L
Sbjct: 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 79.0 bits (194), Expect = 5e-17
Identities = 32/177 (18%), Positives = 60/177 (33%), Gaps = 7/177 (3%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNN--SLRGLTDLNWLFLNNNRLKSL 98
+ L N + + L L + ++ + L + L
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433
Query: 99 EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFN 158
+ +++L + L L ++ + L ++NR+ +L L L L+V
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ 492
Query: 159 MDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTE 213
N + V D NL L + L NN++ + L +L L L N L +
Sbjct: 493 ASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547
Score = 77.9 bits (191), Expect = 1e-16
Identities = 26/166 (15%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 71 NLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQ 130
L ++ +R L L + +L+ + + L + L ++
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLK-AVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS 190
+ L+ + +T L L L + ++ N++ + L L+ + +N + +
Sbjct: 443 VRVLHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLRALP-PALAALRCLEVLQASDNALEN 500
Query: 191 MNSSLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKI 235
+ ++ L +L L L +N+L + + + RL ++L N +
Sbjct: 501 V-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
Score = 75.2 bits (184), Expect = 9e-16
Identities = 37/188 (19%), Positives = 67/188 (35%), Gaps = 4/188 (2%)
Query: 16 NLIDLEPETGSHPLTS-DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTS 74
L +LEPE LT ++ L+ + + + L
Sbjct: 373 ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 432
Query: 75 LNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 134
+ D+ L L + L L L L + L + N+L ALP + L L
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVL 491
Query: 135 YANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDSISLQNNQITSMNS 193
A++N + ++DG+ L +LQ + N++ + L ++LQ N +
Sbjct: 492 QASDNALENVDGV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550
Query: 194 SLSGLTKL 201
L ++
Sbjct: 551 IQERLAEM 558
Score = 75.2 bits (184), Expect = 1e-15
Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 14/218 (6%)
Query: 31 SDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFL 90
+D L + ++ + P + L S+ T L
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELE 369
Query: 91 NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL---------YANNNR 140
+ L+ LE L + LL+ + L +Q FS L ++ +
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429
Query: 141 ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTK 200
+ L ++V ++ +T++ + L + + L +N++ ++ +L+ L
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRC 487
Query: 201 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L L S N L +D + L RL+ + L N++ +
Sbjct: 488 LEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQS 523
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 73.5 bits (181), Expect = 3e-16
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 23/129 (17%)
Query: 59 PPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQ 117
P + +L++ N T + L L + L+NNR+ +L +++L L++ N+
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
L +P GL L++ ++ N I++V F +L
Sbjct: 90 LRCIP----------------------PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 178 LDSISLQNN 186
L +++ N
Sbjct: 128 LSHLAIGAN 136
Score = 65.4 bits (160), Expect = 3e-13
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHN 177
L+ LP I LY + N+ T + L L + ++ N+I+ + F N+
Sbjct: 22 LKVLPKGIPRDVT--ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ 79
Query: 178 LDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
L ++ L N++ + + GL L L L N +
Sbjct: 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 61.5 bits (150), Expect = 6e-12
Identities = 25/105 (23%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 109 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMV 167
L ++ NQ +P ++ + L + +NNRI++L + +T+L + +N++ +
Sbjct: 34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93
Query: 168 RRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
F L +L +SL N I+ + + + L+ L++L + N L
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 54.2 bits (131), Expect = 3e-09
Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLTE 213
+D NQ T+V + E N +L I L NN+I+++ N S S +T+L L LS+N+L
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 214 FLLDDIRGLKRLRTVDLSYNKI 235
GLK LR + L N I
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDI 114
Score = 29.2 bits (66), Expect = 0.97
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 204 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINK 237
LYL NQ T + ++ K L +DLS N+I+
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIST 68
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 76.5 bits (189), Expect = 4e-16
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 24/216 (11%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL---NNSLRG----------LTD 84
L L L N + P ++ L +L +L +N+ G
Sbjct: 343 RGLKVLDLSFNEFSG----ELPESLTNLS---ASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 85 LNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRIT 142
L L+L NN + L S+L L + N L +PS + S+L L N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 143 -SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTK 200
+ L + L+ +DFN +T N NL+ ISL NN++T + + L
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 201 LAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
LA L LS+N + + ++ + L +DL+ N N
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Score = 73.8 bits (182), Expect = 3e-15
Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 13/187 (6%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLK---SLEGQLGTLSKLQLLVIEQN 116
+ L + +++ + + L L L+ N L + LG+ S L+ L + N
Sbjct: 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 117 QLE---ALPSDIQLFSQLGSLYANNNRIT----SLDGLLRGLTKLQVFNMDFNQITMVRR 169
L+ + ++L + L L + N I+ L G +L+ + N+I+
Sbjct: 137 TLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS--GD 193
Query: 170 DEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVD 229
+ NL+ + + +N ++ L + L +L +S N+L+ I L+ ++
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 230 LSYNKIN 236
+S N+
Sbjct: 254 ISSNQFV 260
Score = 73.8 bits (182), Expect = 3e-15
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 9/220 (4%)
Query: 24 TGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLT 83
+G++ + G L L + N I+ + + + L V NN ++ L +
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCS 223
Query: 84 DLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRI 141
L L ++ N+L + T ++L+LL I NQ +P L L N+
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 281
Query: 142 TSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM--NSSLSG 197
T D L L ++ N F + L+S++L +N + +L
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 198 LTKLAYLYLSHNQLTEFLLDDIRGLK-RLRTVDLSYNKIN 236
+ L L LS N+ + L + + L L T+DLS N +
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Score = 73.4 bits (181), Expect = 4e-15
Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 21/211 (9%)
Query: 38 PALITLLLVNNNITHIHENAFPPTI------RKLHVGFNNLT-SLNNSLRGLTDLNWLFL 90
L L L N + P + L + FN+LT + + L T+LNW+ L
Sbjct: 442 SKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 91 NNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRITSLDGLL 148
+NNRL + +G L L +L + N +P+++ L L N N G +
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN---GTI 554
Query: 149 -RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT---SMNSSLSGLTKLAYL 204
+ K + N I R +N N + + L+ L+
Sbjct: 555 PAAMFKQS-GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 205 YLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ + +D+SYN +
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644
Score = 65.3 bits (160), Expect = 2e-12
Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 21/213 (9%)
Query: 38 PALITLLLVNNNIT---HIHENAFPPTIRKLHVGFNNLT----SLNNSLRGLTDLNWLFL 90
L L + +N + + ++ L + N+++ G +L L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 91 NNNRLKSLEGQ--LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT-SLDGL 147
+ N + G + L+ L + N + S L L + N+++
Sbjct: 186 SGN---KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA 242
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEF--QNLHNLDSISLQNNQIT-SMNSSLSG-LTKLAY 203
+ T+L++ N+ NQ L +L +SL N+ T + LSG L
Sbjct: 243 ISTCTELKLLNISSNQFVG----PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 204 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L LS N + L ++ LS N +
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Score = 61.8 bits (151), Expect = 3e-11
Identities = 43/254 (16%), Positives = 73/254 (28%), Gaps = 61/254 (24%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRK------LHVGFNNLT-SLNNSLRGLTDLNWLFL 90
L TL+L N++T P + + + N LT + + L +L L L
Sbjct: 466 KTLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 91 NNNRLK-SLEGQLGTLSKLQLLVIEQNQLE---------------------ALPSDIQLF 128
+NN ++ +LG L L + N I+
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 129 SQLGSLYANNNRIT---SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185
+ N + L L+ N+ F N ++ + +
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 186 NQIT------------------SMN-------SSLSGLTKLAYLYLSHNQLTEFLLDDIR 220
N ++ N + L L L LS N+L + +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 221 GLKRLRTVDLSYNK 234
L L +DLS N
Sbjct: 702 ALTMLTEIDLSNNN 715
Score = 29.5 bits (67), Expect = 1.1
Identities = 17/113 (15%), Positives = 45/113 (39%), Gaps = 10/113 (8%)
Query: 60 PTIRKLHVGFNNLT-SLNNSLRGLTDLNWLFLNNNRLKSLEGQ----LGTLSKLQLLVIE 114
T ++ + + + +L ++ N L G +G++ L +L +
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML---SGYIPKEIGSMPYLFILNLG 664
Query: 115 QNQLE-ALPSDIQLFSQLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFNQIT 165
N + ++P ++ L L ++N++ + + LT L ++ N ++
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 73.3 bits (181), Expect = 2e-15
Identities = 51/224 (22%), Positives = 80/224 (35%), Gaps = 31/224 (13%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN----NSLRG------ 81
D T + L L N+ P ++ L L L N+L G
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPK--PYPIPSSLANLP----YLNFLYIGGINNLVGPIPPAI 97
Query: 82 --LTDLNWLFLNNNRLK-SLEGQLGTLSKLQLLVIEQNQLE-ALPSDIQLFSQLGSLYAN 137
LT L++L++ + + ++ L + L L N L LP I L + +
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 138 NNRIT-----SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SM 191
NRI+ S G L + N++T F NL NL + L N +
Sbjct: 158 GNRISGAIPDSY-GSFSKL--FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDA 213
Query: 192 NSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
+ ++L+ N L F L + K L +DL N+I
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRI 256
Score = 65.6 bits (161), Expect = 9e-13
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 14/186 (7%)
Query: 62 IRKLHVGFNNLT---SLNNSLRGLTDLNWLFLNNNRLKSLEG----QLGTLSKLQLLVIE 114
+ L + NL + +SL L LN+L++ +L G + L++L L I
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYIT 109
Query: 115 QNQLE-ALPSDIQLFSQLGSLYANNNRIT-SLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
+ A+P + L +L + N ++ +L + L L D N+I+ D +
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 173 QNLHNLD-SISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
+ L S+++ N++T + + + L LA++ LS N L K + + L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 231 SYNKIN 236
+ N +
Sbjct: 229 AKNSLA 234
Score = 61.8 bits (151), Expect = 2e-11
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 18/185 (9%)
Query: 40 LITLLLVNNNITHIHENAFPPTI------RKLHVGFNNLT-SLNNSLRGLTDLNWLFLNN 92
L L + + N++ A P + L +N L+ +L S+ L +L + +
Sbjct: 103 LHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 93 NRLK-SLEGQLGTLSKL-QLLVIEQNQLE-ALPSDIQLFSQLGSLYANNNRIT-SLDGLL 148
NR+ ++ G+ SKL + I +N+L +P + L + + N + L
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLF 217
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLS 207
Q ++ N + + NL+ + L+NN+I ++ L+ L L L +S
Sbjct: 218 GSDKNTQKIHLAKNSLAF-DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 208 HNQLT 212
N L
Sbjct: 277 FNNLC 281
Score = 54.1 bits (131), Expect = 7e-09
Identities = 24/142 (16%), Positives = 53/142 (37%), Gaps = 7/142 (4%)
Query: 102 LGTLSKLQLLVIEQNQLE---ALPSDIQLFSQLGSLY-ANNNRIT-SLDGLLRGLTKLQV 156
++ L + L +PS + L LY N + + + LT+L
Sbjct: 46 DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105
Query: 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFL 215
+ ++ D + L ++ N ++ ++ S+S L L + N+++ +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Query: 216 LDDIRGLKRLRTV-DLSYNKIN 236
D +L T +S N++
Sbjct: 166 PDSYGSFSKLFTSMTISRNRLT 187
Score = 38.7 bits (91), Expect = 0.001
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 170 DEFQNLHNLDSISLQNNQIT---SMNSSLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRL 225
D + ++++ L + + SSL+ L L +LY+ N L + I L +L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 226 RTVDLSYNKIN 236
+ +++ ++
Sbjct: 104 HYLYITHTNVS 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 63.8 bits (156), Expect = 8e-13
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 24/131 (18%)
Query: 59 PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN 116
P + +L + N L SL + LT L L L+ N+++SL +G L+KL +L + +N
Sbjct: 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
+L++LP +G+ LT+L+ +D NQ+ V F L
Sbjct: 87 KLQSLP----------------------NGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 177 NLDSISLQNNQ 187
+L I L N
Sbjct: 125 SLQKIWLHTNP 135
Score = 56.5 bits (137), Expect = 3e-10
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 24/130 (18%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
+ L L +N+L+SL G L++L L + QNQ+++LP
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------------------ 69
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTK 200
G+ LTKL + + N++ + F L L ++L NQ+ S+ + LT
Sbjct: 70 ----GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS 125
Query: 201 LAYLYLSHNQ 210
L ++L N
Sbjct: 126 LQKIWLHTNP 135
Score = 51.9 bits (125), Expect = 1e-08
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
L ++P+ I + L +N++ SL G+ LT+L ++ NQI + F L
Sbjct: 19 LTSVPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76
Query: 177 NLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQL 211
L + L N++ S+ N LT+L L L NQL
Sbjct: 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112
Score = 46.1 bits (110), Expect = 1e-06
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 210
+ ++ N++ + F L L +SL NQI S+ + LTKL LYL N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 211 LT 212
L
Sbjct: 88 LQ 89
Score = 33.8 bits (78), Expect = 0.024
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 183 LQNNQITSMNSSL-SGLTKLAYLYLSHNQLTEF---LLDDIRGLKRLRTVDLSYNK 234
L++N++ S+ + LT+L L LS NQ+ + D + L L L NK
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL---YLHENK 87
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 63.5 bits (155), Expect = 1e-12
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 109 QLLVIEQNQLEALPSD--IQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQIT 165
L++ N+L + SD L L N++T + G + +Q + N+I
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 166 MVRRDEFQNLHNLDSISLQNNQITS-MNSSLSGLTKLAYLYLSHN 209
+ F LH L +++L +NQI+ M S L L L L+ N
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 63.1 bits (154), Expect = 2e-12
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 118 LEALPSDIQLFSQLGSLYANNNRITSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
L+ +P DI L + L N+N + + DGL L L + NQ+T + + F+
Sbjct: 20 LKEIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77
Query: 176 HNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQLT 212
++ + L N+I + N GL +L L L NQ++
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Score = 51.9 bits (125), Expect = 2e-08
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 155 QVFNMDFNQITMVRRD-EFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 212
++ N++ + D F L +L + L+ NQ+T + + G + + L L N++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 213 EFLLDDIRGLKRLRTVDLSYNKI 235
E GL +L+T++L N+I
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQI 114
Score = 49.6 bits (119), Expect = 1e-07
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 43 LLLVNNNITHIHENAF---PPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSL 98
LLL +N + I + P + KL + N LT + N+ G + + L L N++K +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 99 -EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSL 134
L +L+ L + NQ+ + F L SL
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGS--FEHLNSL 128
Score = 33.8 bits (78), Expect = 0.027
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 22/78 (28%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSL- 98
+ L L N I I F GL L L L +N++ +
Sbjct: 80 IQELQLGENKIKEISNKMF---------------------LGLHQLKTLNLYDNQISCVM 118
Query: 99 EGQLGTLSKLQLLVIEQN 116
G L+ L L + N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 64.8 bits (157), Expect = 2e-12
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%)
Query: 115 QNQLEALPSDIQLFSQLGSLY-ANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF 172
++ + L LY N + L LRGL +L+ + + + V D F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT 212
L ++L N + S++ L L LS N L
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
Score = 59.0 bits (142), Expect = 2e-10
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 137 NNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQITSM-NSS 194
+ + SL L G L ++ Q + + + + L L ++++ + + + +
Sbjct: 17 RDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 195 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+L+ L LS N L ++GL L+ + LS N ++
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
Score = 57.1 bits (137), Expect = 8e-10
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 32 DDLKGTPALITLLLVNNN-ITHIHENAFP--PTIRKLHVGFNNLTSL-NNSLRGLTDLNW 87
L G L L + N + H+ +R L + + L + ++ L+
Sbjct: 25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84
Query: 88 LFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 118
L L+ N L+SL + LQ LV+ N L
Sbjct: 85 LNLSFNALESLSWKTVQGLSLQELVLSGNPL 115
Score = 57.1 bits (137), Expect = 8e-10
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 25/129 (19%)
Query: 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLLVIEQNQLEA 120
L + + L G +L L++ N L+ LE L L +L+ L I ++ L
Sbjct: 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDS 180
+ +L N+ FN + + Q L +L
Sbjct: 71 VA----------------------PDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQE 107
Query: 181 ISLQNNQIT 189
+ L N +
Sbjct: 108 LVLSGNPLH 116
Score = 55.5 bits (133), Expect = 3e-09
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 15 LNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNL 72
L + +E + L DL+G L L +V + + + +AF P + +L++ FN L
Sbjct: 33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92
Query: 73 TSLNNSLRGLTDLNWLFLNNNRL 95
SL+ L L L+ N L
Sbjct: 93 ESLSWKTVQGLSLQELVLSGNPL 115
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 63.0 bits (153), Expect = 6e-12
Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 22/194 (11%)
Query: 38 PALITLLLVNNNITHIHE------NAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFL 90
P L L L N + P ++ L + + + +R L+ L L
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180
Query: 91 NNNRLKSLEG-----QLGTLSKLQLLVIEQNQLEALP----SDIQLFSQLGSLYANNNRI 141
++N G LQ+L + +E + QL L ++N +
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240
Query: 142 TSL--DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
++L N+ F + V + L LD L N++ N S L
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD---LSYNRLDR-NPSPDELP 296
Query: 200 KLAYLYLSHNQLTE 213
++ L L N +
Sbjct: 297 QVGNLSLKGNPFLD 310
Score = 58.8 bits (142), Expect = 2e-10
Identities = 40/216 (18%), Positives = 68/216 (31%), Gaps = 24/216 (11%)
Query: 40 LITLLLVNNNITHIH----ENAFPPTIRKLHVGFNNLTSLNNSLRGL-----TDLNWLFL 90
L L L N +T A P + L++ + + + L L L L +
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156
Query: 91 NNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQL-----FSQLGSLYANNNRITSL 144
+ Q+ L L + N I F L L N + +
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 145 DG----LLRGLTKLQVFNMDFNQIT-MVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
G L +LQ ++ N + L+S++L + + L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A 274
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
KL+ L LS+N+L L ++ + L N
Sbjct: 275 KLSVLDLSYNRLDR--NPSPDELPQVGNLSLKGNPF 308
Score = 53.4 bits (128), Expect = 1e-08
Identities = 38/221 (17%), Positives = 75/221 (33%), Gaps = 36/221 (16%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
LT + ++ L I+ + E ++ DLN L
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTL------ENLEVTGTAPPPLLEATGPDLNIL 126
Query: 89 FLNNNRLKSLEGQLGTLS-----KLQLLVIEQNQLEALPSD-IQLFSQLGSLYANNNRIT 142
L N + + L L L++L I Q + +++F L +L ++N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS----MNSSLSGL 198
GL+ L L+ L ++L+N + + ++ +
Sbjct: 187 GERGLISALCPLK-------------------FPTLQVLALRNAGMETPSGVCSALAAAR 227
Query: 199 TKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDLSYNKINKF 238
+L L LSHN L + +L +++LS+ + +
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Score = 40.7 bits (95), Expect = 2e-04
Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 12/150 (8%)
Query: 98 LEGQLGTLSKLQLLVIEQNQLEALP-SDIQLFSQLGSLYANNNRIT--SLDGLLRGLTKL 154
+E G S LL + + +DI L L RI L G LR L
Sbjct: 36 VELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGIS 95
Query: 155 QVFNMDFNQITMVRRDEFQ----NLHNLDSISLQNNQITSMNSSLSGL-----TKLAYLY 205
+ + + + +L+ ++L+N + ++ L+ L L L
Sbjct: 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
++ F + +R L T+DLS N
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185
Score = 29.9 bits (67), Expect = 0.68
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 37 TPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLK 96
L +L L + + + P + L + +N L + L + L L N
Sbjct: 252 PSQLNSLNLSFTGLKQVPKG-LPAKLSVLDLSYNRLDRNPSPD-ELPQVGNLSLKGNPFL 309
Query: 97 SLE 99
E
Sbjct: 310 DSE 312
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 59.7 bits (145), Expect = 2e-11
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 45 LVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGT 104
L I + R+L + + + N L + + ++N ++ L+G
Sbjct: 4 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPL 62
Query: 105 LSKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDF 161
L +L+ L++ N++ + + Q L L NN + L L L L L +
Sbjct: 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122
Query: 162 NQIT 165
N +T
Sbjct: 123 NPVT 126
Score = 51.2 bits (123), Expect = 3e-08
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Query: 137 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196
I + + ++ +I ++ + L D+I +N+I +
Sbjct: 5 TAELIEQAAQYT-NAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-DGFP 61
Query: 197 GLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
L +L L +++N++ + L L + L+ N + + G
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD 105
Score = 49.7 bits (119), Expect = 8e-08
Identities = 15/80 (18%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLD 217
+ I + ++ N + L+ +I + + + L + + S N++ + LD
Sbjct: 3 KLTAELIE--QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LD 58
Query: 218 DIRGLKRLRTVDLSYNKINK 237
L+RL+T+ ++ N+I +
Sbjct: 59 GFPLLRRLKTLLVNNNRICR 78
Score = 33.1 bits (76), Expect = 0.047
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLN--NSLRGLTDLNW 87
D L TLL+ NN I I E P + +L + N+L L + L L L +
Sbjct: 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
Query: 88 LFLNNN 93
L + N
Sbjct: 118 LCILRN 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 54.9 bits (133), Expect = 1e-09
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 23/105 (21%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
T L+L +N++ LE G L++L L ++ NQL LP+
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA------------------ 71
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
G+ LT+L +++ NQ+ + R F NL +L I L NN
Sbjct: 72 ----GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 49.9 bits (120), Expect = 6e-08
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 59 PPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN 116
P T + L++ N +T L + LT L L L+NN+L L G L++L L + N
Sbjct: 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Query: 117 QLEALPSDIQLFSQLGSL---YANNN 139
QL+++P F L SL + NN
Sbjct: 89 QLKSIPRGA--FDNLKSLTHIWLLNN 112
Score = 49.2 bits (118), Expect = 1e-07
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
L ++P+ I + LY +N+IT L+ G+ LT+L ++D NQ+T++ F
Sbjct: 19 KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76
Query: 175 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
L L +SL +NQ+ S+ + L L +++L +N
Sbjct: 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 44.1 bits (105), Expect = 8e-06
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQ 210
T QV + NQIT + F L L + L NNQ+T + + + LT+L L L+ NQ
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89
Query: 211 L 211
L
Sbjct: 90 L 90
Score = 36.1 bits (84), Expect = 0.004
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 177 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 212
+ L +NQIT + + LT+L L L +NQLT
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 54.2 bits (131), Expect = 2e-09
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
TD L+LNNN++ LE G L LQ L N+L A+P+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT------------------ 74
Query: 142 TSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
G+ LT+L +++ N + + R F NL +L I L NN
Sbjct: 75 ----GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 49.6 bits (119), Expect = 1e-07
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 59 PPTIRKLHVGFNNLTSLNNSL-RGLTDLNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQN 116
P ++L + N +T L + L +L L+ N+N+L ++ G L++L L + N
Sbjct: 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Query: 117 QLEALPSDIQLFSQLGSL---YANNN 139
L+++P F L SL Y NN
Sbjct: 92 HLKSIPRGA--FDNLKSLTHIYLYNN 115
Score = 47.6 bits (114), Expect = 5e-07
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
+L ++P+ I + L+ NNN+IT L G+ L LQ + N++T + F
Sbjct: 22 IRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 175 LHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHN 209
L L + L +N + S+ + L L ++YL +N
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 44.2 bits (105), Expect = 6e-06
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSG----LTKLAYLYLS 207
T Q ++ NQIT + F +L NL + +N++T++ +G LT+L L L+
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI---PTGVFDKLTQLTQLDLN 89
Query: 208 HNQL 211
N L
Sbjct: 90 DNHL 93
Score = 35.7 bits (83), Expect = 0.006
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 177 NLDSISLQNNQITSMNSSL-SGLTKLAYLYLSHNQLT 212
+ + L NNQIT + + L L LY + N+LT
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 54.2 bits (131), Expect = 1e-08
Identities = 43/249 (17%), Positives = 78/249 (31%), Gaps = 43/249 (17%)
Query: 34 LKGTPALITLLLVNNNI-----THIHENAFPP--TIRKLHVGFNNLT-----SLNNSLRG 81
L+ P L + NN+I + + + L + +T L +
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225
Query: 82 LTDLNWLFLNNNRLKS------LEGQLGTLSKLQLLVIEQNQL-----EALPSDIQLFSQ 130
L L L +N+L G L S+L+ L I + + L ++
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285
Query: 131 LGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDEF----QNLHNLDS 180
L L N + + LL +L+ + T F L
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 181 ISLQNNQITSMNSSL------SGLTKLAYLYLSHNQLTE----FLLDDIRGLKRLRTVDL 230
+ + NN++ + L L+L+ +++ L + LR +DL
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405
Query: 231 SYNKINKFG 239
S N + G
Sbjct: 406 SNNCLGDAG 414
Score = 44.2 bits (105), Expect = 2e-05
Identities = 42/241 (17%), Positives = 79/241 (32%), Gaps = 56/241 (23%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
L + L + +T ++++LR L L L +N
Sbjct: 24 LPLLQQCQVVRLDDCGLTEAR-----------------CKDISSALRVNPALAELNLRSN 66
Query: 94 RL-----KSLEGQLGTLS-KLQLLVIEQNQL-----EALPSDIQLFSQLGSLYANNNRIT 142
L + L T S K+Q L ++ L L S ++ L L+ ++N +
Sbjct: 67 ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126
Query: 143 S------LDGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNLHNLDSISLQNNQI 188
+GLL +L+ +++ ++ + + +++ NN I
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLS----AASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 189 --TSMNSSLSGL----TKLAYLYLSHNQLTE----FLLDDIRGLKRLRTVDLSYNKINKF 238
+ GL +L L L +T L + LR + L NK+
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 239 G 239
G
Sbjct: 243 G 243
Score = 43.8 bits (104), Expect = 2e-05
Identities = 36/196 (18%), Positives = 71/196 (36%), Gaps = 37/196 (18%)
Query: 75 LNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL-----EALPSDIQLFS 129
++ ++ L D+ L++ R L L L + Q++ ++ L + + S +++
Sbjct: 1 MSLDIQSL-DIQCEELSDARWAEL---LPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 56
Query: 130 QLGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNL 175
L L +N + L GL K+Q ++ +T + L
Sbjct: 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT----GAGCGVLSSTLRTL 112
Query: 176 HNLDSISLQNNQITSM------NSSLSGLTKLAYLYLSHNQLTE----FLLDDIRGLKRL 225
L + L +N + L +L L L + L+ L +R
Sbjct: 113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDF 172
Query: 226 RTVDLSYNKINKFGTR 241
+ + +S N IN+ G R
Sbjct: 173 KELTVSNNDINEAGVR 188
Score = 41.5 bits (98), Expect = 2e-04
Identities = 41/225 (18%), Positives = 70/225 (31%), Gaps = 51/225 (22%)
Query: 34 LKGTPALITLLLVNNNIT-----HIHENAFPP--TIRKLHVGFNNLTS-----LNNSLRG 81
+ +L L L +N + + P +R L + +T+ L LR
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282
Query: 82 LTDLNWLFLNNNRLKS------LEGQLGTLSKLQLLVIEQNQL-----EALPSDIQLFSQ 130
L L L N L E L +L+ L ++ S +
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342
Query: 131 LGSLYANNNRITS------LDGLLRGLTKLQVFNMDFNQITMVRRDE--------FQNLH 176
L L +NNR+ GL + + L+V + ++ D H
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS----DSSCSSLAATLLANH 398
Query: 177 NLDSISLQNNQITSMNSSLSGL--------TKLAYLYLSHNQLTE 213
+L + L NN + ++ + L L L L +E
Sbjct: 399 SLRELDLSNNCLG--DAGILQLVESVRQPGCLLEQLVLYDIYWSE 441
Score = 36.9 bits (86), Expect = 0.004
Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 33/208 (15%)
Query: 61 TIRKLHVGFNNLT--SLNNSLRGLTDLNWLFLNNNRL-----KSLEGQLGTLSKLQLLVI 113
I+ L + L+ L L + L++ L K + L L L +
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 114 EQNQL-----EALPSDIQLFS-QLGSLYANNNRIT-----SLDGLLRGLTKLQVFNMDFN 162
N+L + +Q S ++ L N +T L LR L LQ ++ N
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 163 QIT-----MVRRDEFQNLHNLDSISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLT 212
+ ++ L+ + L+ +++ + S L L +S+N +
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 213 EFLLDDI-RGLK----RLRTVDLSYNKI 235
E + + +GLK +L + L +
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGV 211
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 50.1 bits (120), Expect = 5e-08
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 48 NNITHIHENAFPPTIRK--LHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTL 105
I N P +R+ L +N + +L +L L N L S+ L L
Sbjct: 12 RRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKL 70
Query: 106 SKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFN 162
KL+ L + +N++ + + L L + N++ + L L+ L L+ ++
Sbjct: 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Query: 163 QIT 165
++T
Sbjct: 131 EVT 133
Score = 46.3 bits (110), Expect = 1e-06
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
NL+ +SL N + S+ S+L L KL L LS N++ L L L ++LS
Sbjct: 46 AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104
Query: 233 NKINKFGT 240
NK+ T
Sbjct: 105 NKLKDIST 112
Score = 33.9 bits (78), Expect = 0.022
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNN--SLRGLTDLNW 87
+L P L L L N I + P + L++ N L ++ L+ L L
Sbjct: 65 SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124
Query: 88 LFLNNNRLKSLEG 100
L L N + +L
Sbjct: 125 LDLFNCEVTNLND 137
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 50.9 bits (122), Expect = 1e-07
Identities = 43/245 (17%), Positives = 75/245 (30%), Gaps = 41/245 (16%)
Query: 35 KGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNR 94
+ L + ++ + T R L L +L L+ + L++N
Sbjct: 47 EAARWLSENIASKKDLEIAEFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105
Query: 95 L-----KSLEGQLGTLSKLQLLVIEQNQL---------EALPSDIQLF-----SQLGSLY 135
+ L L + L+ L + N L AL L S+
Sbjct: 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165
Query: 136 ANNNRITS-----LDGLLRGLTKLQVFNMDFNQITM-----VRRDEFQNLHNLDSISLQN 185
NR+ + + L M N I + + L + LQ+
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225
Query: 186 NQIT-----SMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGL--KRLRTVDLSYNK 234
N T ++ +L L L L+ L+ ++D L L+T+ L YN+
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285
Query: 235 INKFG 239
I
Sbjct: 286 IELDA 290
Score = 42.0 bits (99), Expect = 8e-05
Identities = 38/246 (15%), Positives = 73/246 (29%), Gaps = 64/246 (26%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIH--ENAF--------------PPTIRKLHVGFNNL 72
+ + + L+ LL + + +NAF + L++ N L
Sbjct: 75 VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Query: 73 T--------------SLNNSLRGLTDLNWLFLNNNRL-----KSLEGQLGTLSKLQLLVI 113
++N + L + NRL K + L + +
Sbjct: 135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 194
Query: 114 EQNQL------EALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGLTKLQVFNMDFN 162
QN + L + +L L +N T +L L+ L+ ++
Sbjct: 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254
Query: 163 QIT---------MVRRDEFQNLHNLDSISLQNNQITS------MNSSLSGLTKLAYLYLS 207
++ + E L L LQ N+I + L +L L+
Sbjct: 255 LLSARGAAAVVDAFSKLENIGLQTLR---LQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311
Query: 208 HNQLTE 213
N+ +E
Sbjct: 312 GNRFSE 317
Score = 33.1 bits (76), Expect = 0.066
Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 28/154 (18%)
Query: 102 LGTLSKLQLLVIEQNQL-----EALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGL 151
+ S ++ ++ + + +++ + + + + + N I L +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
L++ V+ + + L L +L KL + LS N
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLL-------------LQALLKCPKLHTVRLSDNAF 106
Query: 212 T----EFLLDDIRGLKRLRTVDLSYNKINKFGTR 241
E L+D + L + L N +
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 47.7 bits (114), Expect = 3e-07
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 140 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQITSMNSSLSGL 198
R L+ R + ++ +D ++ + + L+ +S N +TS+ ++L L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKL 63
Query: 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGT 240
KL L LS N+++ L L ++LS NKI T
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
Score = 46.6 bits (111), Expect = 7e-07
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 6/123 (4%)
Query: 48 NNITHIHENAFPPTIRKLHVGFN--NLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTL 105
I N P +++L + + N L +L +L N L S+ L L
Sbjct: 5 RRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKL 63
Query: 106 SKLQLLVIEQNQLEALPSDI-QLFSQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFN 162
+KL+ L + N++ + + L L + N+I L + L+ L L+ ++
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Query: 163 QIT 165
++T
Sbjct: 124 EVT 126
Score = 33.9 bits (78), Expect = 0.016
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 32 DDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNN--SLRGLTDLNW 87
+L L L L +N ++ E P + L++ N + L+ L+ L +L
Sbjct: 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117
Query: 88 LFLNNNRLKSLEG 100
L L N + +L
Sbjct: 118 LDLFNCEVTNLND 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 41/263 (15%), Positives = 90/263 (34%), Gaps = 64/263 (24%)
Query: 16 NLID-LEPETGSHPLTSDDLKG-TPA-LITLLLVNNNITHIHENAFPPTIRK---LHVGF 69
+ D L T +H TP + +LLL P + +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSI 332
Query: 70 NNLTSLNNSLRGLTDL--NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQ--NQLEALPSDI 125
+ S+R NW +N ++L + +IE N LE P++
Sbjct: 333 -----IAESIRDGLATWDNWKHVNCDKLTT--------------IIESSLNVLE--PAEY 371
Query: 126 Q-LFSQLGSLYANNNRITS--LDGLLRGLTKLQVFNM--DFNQITMVRRDEFQN---LHN 177
+ +F +L S++ + I + L + + K V + ++ ++V + ++ + +
Sbjct: 372 RKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 178 LD-SISLQNNQITSMNSSL------------SGLTKLA-----YLYLSHNQLTEFLLDDI 219
+ + ++ +++ S+ L Y ++ H+ L +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPER 489
Query: 220 RGLKRLRTVDLSY--NKINKFGT 240
L R+ +D + KI T
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDST 512
Score = 44.5 bits (104), Expect = 2e-05
Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 43/199 (21%)
Query: 38 PALITLLLVNNNITHIHENAF--PPTIRKLHVG-FNNLTSLNNSLRGLTDLNWLFLNNNR 94
P+++T + + + + K +V L +L L + +
Sbjct: 105 PSMMTRMYIEQ-----RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---- 155
Query: 95 LKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKL 154
+G LG+ K + ++ L +Q + N S + +L L KL
Sbjct: 156 ----DGVLGS-GK-TWVALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEF 214
QI N + S +N ++S + L +L L
Sbjct: 206 ------LYQID-------PNWTSRSDHS--SNIKLRIHSIQAELRRL----LKSKPYENC 246
Query: 215 L--LDDIRGLKRLRTVDLS 231
L L +++ K +LS
Sbjct: 247 LLVLLNVQNAKAWNAFNLS 265
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 43.8 bits (102), Expect = 2e-05
Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 25/191 (13%)
Query: 60 PTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLE 119
L G + S DL+ + L +L ++ + L + + L+
Sbjct: 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNL--KIKGTNNLSIGKKPRPNLK 196
Query: 120 ALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEF------ 172
+L ++ S ++ + + L L KL ++ + + F
Sbjct: 197 SL--------EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248
Query: 173 QNLHNLDSISLQNNQIT----SMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKR 224
NL + + + + M L +L + +S LT LLD + +K
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308
Query: 225 LRTVDLSYNKI 235
L+ +++ YN +
Sbjct: 309 LKFINMKYNYL 319
Score = 38.0 bits (87), Expect = 0.002
Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 12/147 (8%)
Query: 77 NSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA 136
++G +L+ LKSLE G L + I + L L + L+ + Y
Sbjct: 177 LKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNL-EKLVLYVGV-EDYG 234
Query: 137 NNNRITSLDGLLRG--LTKLQVFNMDFNQIT---MVRRDEFQNLHNLDSISLQNNQITSM 191
+ + L L+ + + + E L L+++ + +T
Sbjct: 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294
Query: 192 N-----SSLSGLTKLAYLYLSHNQLTE 213
+ + L ++ + +N L++
Sbjct: 295 GARLLLDHVDKIKHLKFINMKYNYLSD 321
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 38.0 bits (88), Expect = 0.002
Identities = 36/212 (16%), Positives = 67/212 (31%), Gaps = 20/212 (9%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
L S LKG P L+ N P + ++ L S++ ++DL+
Sbjct: 75 LRSLKLKGKPRAAMFNLIPENWGGYVT----PWVTEISNNLRQLKSVHFRRMIVSDLDLD 130
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG-- 146
L R LE L+L + L S + ++ +L + + DG
Sbjct: 131 RLAKARADDLE-------TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183
Query: 147 ---LLRGLTKLQVFNMDFNQITMVR----RDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
L + T L+V N + + +N +L S+ + + +I +
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAA 243
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
L + + L R +
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRL 275
Score = 36.8 bits (85), Expect = 0.006
Identities = 27/211 (12%), Positives = 69/211 (32%), Gaps = 31/211 (14%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWL 88
L ++ + ++ + L G L + + +T+ +
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQR-------GLIALAQGCQELEYMAVYVSDITNES-- 394
Query: 89 FLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLL 148
L+S+ L L +L+++++ + +D+ L + + SL ++ L
Sbjct: 395 ------LESIGTYLKNLCDFRLVLLDREERI---TDLPLDNGVRSLLIGCKKLRRFAFYL 445
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT--SMNSSLSGLTKLAYLYL 206
R + ++ + I Q N+ + L + + G L L +
Sbjct: 446 RQG---GLTDLGLSYIG-------QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495
Query: 207 SHNQLTEF-LLDDIRGLKRLRTVDLSYNKIN 236
+E + + L LR + + + +
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526
Score = 34.9 bits (80), Expect = 0.021
Identities = 32/187 (17%), Positives = 61/187 (32%), Gaps = 38/187 (20%)
Query: 66 HVGFNNLTSLNNSLRGLTDLN--WLFLNNNRLKSLEGQLGTLSKLQLL-VIEQNQLEALP 122
++G N + L + L+ + L +L + L L+ VI LE L
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338
Query: 123 S--------DIQLFSQLGSLYANNNRIT--SLDGLLRGLTKLQVFNMDFNQITMVRRDEF 172
I+ + + ++ L L +G +L+ + + IT
Sbjct: 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT------- 391
Query: 173 QNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSH-NQLTEFLLDD-----IRGLKRLR 226
N + S+ + L L + L ++T+ LD+ + G K+LR
Sbjct: 392 ------------NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439
Query: 227 TVDLSYN 233
Sbjct: 440 RFAFYLR 446
Score = 31.8 bits (72), Expect = 0.19
Identities = 30/185 (16%), Positives = 63/185 (34%), Gaps = 23/185 (12%)
Query: 71 NLTSLNNSLRGLTD--LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL--EALPSDIQ 126
NL L + D L L +LK L + + Q + E+ + L + Q
Sbjct: 319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLR--IERGADEQGMEDEEGLVSQRGLIALAQ 375
Query: 127 LFSQLGSLYANNNRIT-----SLDGLLRGLTKLQVFNMDF-NQITMVRRDE-----FQNL 175
+L + + IT S+ L+ L ++ +D +IT + D
Sbjct: 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435
Query: 176 HNLDSISLQNN--QIT--SMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLKRLRTVDL 230
L + +T ++ + ++ L + ++ L + RG L+ +++
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495
Query: 231 SYNKI 235
Sbjct: 496 RGCCF 500
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 37.7 bits (87), Expect = 0.002
Identities = 14/75 (18%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 168 RRDEFQNLHNLD-SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT--EFLLDDIRGLKR 224
R D N+D ++ ++ ++ + +L L LS+N+L + + ++
Sbjct: 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPN 197
Query: 225 LRTVDLSYNKINKFG 239
L+ ++LS N++
Sbjct: 198 LKILNLSGNELKSER 212
Score = 36.5 bits (84), Expect = 0.005
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 109 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 168
Q L ++ + + + L + +L + + +L N+ N++ +
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVVLNRR---SCMAATLRIIEENIPELLSLNLSNNRLYRLD 186
Query: 169 --RDEFQNLHNLDSISLQNNQITSMNS--SLSGLTKLAYLYLSHNQLTEFLLDD 218
Q NL ++L N++ S + GL KL L+L N L + D
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQ 239
Score = 31.9 bits (72), Expect = 0.16
Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 37/133 (27%)
Query: 63 RKLHVGFNNLTSLNNSLRGLTD----LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL 118
+ + V N + + +LR + + L L L+NNRL L+
Sbjct: 146 QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDD------------------ 187
Query: 119 EALPSDIQLFSQLGSLYANNNRITSLDGL--LRGLTKLQVFNMDFNQITMVRRDE----- 171
+ S +Q L L + N + S L ++GL KL+ +D N + RD+
Sbjct: 188 --MSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244
Query: 172 -----FQNLHNLD 179
F L LD
Sbjct: 245 AIRERFPKLLRLD 257
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 37.4 bits (87), Expect = 0.003
Identities = 29/161 (18%), Positives = 56/161 (34%), Gaps = 20/161 (12%)
Query: 91 NNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRG 150
N L L + L L+ + +L L + S+L + +
Sbjct: 11 NRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEV 70
Query: 151 LTKLQVFNMDFNQIT---------MVRRDEFQNLHNLDSISLQNNQITS--MNSSLSGLT 199
L+ L+ N+ ++T ++ H LD ++L + Q+ + + L
Sbjct: 71 LSSLRQLNLAGVRMTPVKCTVVAAVLG----SGRHALDEVNLASCQLDPAGLRTLLPVFL 126
Query: 200 KLAYLYLSHNQLTEFLLDDI-RGLK----RLRTVDLSYNKI 235
+ L L N L D+ L ++ T+ LS N +
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167
Score = 32.0 bits (73), Expect = 0.16
Identities = 30/203 (14%), Positives = 63/203 (31%), Gaps = 35/203 (17%)
Query: 70 NNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ------LGTLSKLQLLVIEQNQL--EAL 121
+ S L+ L L L R+ ++ L + + QL L
Sbjct: 59 YEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGL 118
Query: 122 PSDIQLFSQLGSLYANNNRITSL------DGLLRGLTKLQVFNMDFNQITMVRRDE---- 171
+ + +F + L N + D LL ++ + N +T
Sbjct: 119 RTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT----AAGVAV 174
Query: 172 ----FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLT----EFLLDD 218
++ +SL + + + + L +L L +++N L
Sbjct: 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234
Query: 219 IRGLKRLRTVDLSYNKINKFGTR 241
R L + L +N+++ G +
Sbjct: 235 AREHPSLELLHLYFNELSSEGRQ 257
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 37.2 bits (86), Expect = 0.003
Identities = 39/240 (16%), Positives = 80/240 (33%), Gaps = 29/240 (12%)
Query: 11 HAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFN 70
H NL+ +P L + L +T + + F
Sbjct: 78 HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-------CLELIAKSFK 130
Query: 71 NLTSLN-NSLRGLTD--LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQL 127
N L +S G + L + LK L+ L + + + + L P
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELD-----LRESDVDDVSGHWLSHFP---DT 182
Query: 128 FSQLGSLYANN--NRIT--SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 183
++ L SL + + ++ +L+ L+ L+ ++ Q L+ +
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242
Query: 184 -------QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ + + ++ +LSG +L L + + +L RL T++LSY +
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302
Score = 34.5 bits (79), Expect = 0.025
Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 25/181 (13%)
Query: 62 IRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEAL 121
+ + +G L S+ R +T+ L ++ +++ +L +IE + L
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAA--------LITIARNRPNMTRFRLCIIEPKAPDYL 415
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSI 181
+ G++ + + L L LT + ++ +
Sbjct: 416 TLEPLDIG-FGAIVEHCKDLRRLS-LSGLLTDKVFEYI------------GTYAKKMEML 461
Query: 182 SLQNNQIT--SMNSSLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
S+ + M+ LSG L L + + LL + L+ +R++ +S ++
Sbjct: 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521
Query: 239 G 239
Sbjct: 522 A 522
Score = 32.6 bits (74), Expect = 0.11
Identities = 35/205 (17%), Positives = 68/205 (33%), Gaps = 17/205 (8%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLN--NSLRGLTD--LNWLF 89
L L L +++ + + + + +L SLN ++ L L
Sbjct: 152 AATCRNLKELDLRESDVDDVSGHW----LSHFPDTYTSLVSLNISCLASEVSFSALERLV 207
Query: 90 LNNNRLKSLE-GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLL 148
LKSL+ + L KL L+ QLE L ++ + + L L
Sbjct: 208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL--GTGGYTAEV----RPDVYSGLSVAL 261
Query: 149 RGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQIT--SMNSSLSGLTKLAYLYL 206
G +L+ + ++ + + L +++L + + L KL L++
Sbjct: 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321
Query: 207 SHNQLTEFLLDDIRGLKRLRTVDLS 231
L K LR + +
Sbjct: 322 LDYIEDAGLEVLASTCKDLRELRVF 346
Score = 29.5 bits (66), Expect = 1.0
Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 10/117 (8%)
Query: 131 LGSLYANNNRITSLDGLLRGLTKLQVFNM----DFNQITMVRRDEFQNLHNLDSISLQNN 186
++ ++ S++ L+G FN+ + + L+ I L+
Sbjct: 58 PATVIRRFPKVRSVE--LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM 115
Query: 187 QIT--SMNSSLSGLTKLAYLYLSH-NQLTEFLLDDI-RGLKRLRTVDLSYNKINKFG 239
+T + L LS + L I + L+ +DL + ++
Sbjct: 116 VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVS 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 35.2 bits (81), Expect = 0.005
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 177 NLDSISLQNNQITSMNS-SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKR 224
+ + L N +T++ L L L +L N + L+
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD--CRLVPLRA 78
Score = 33.2 bits (76), Expect = 0.022
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 83 TDLNWLFLNNNRLKSLE-GQLGTLSKLQLLVIEQNQL 118
D L L N L +L G L L L+ + N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 33.2 bits (76), Expect = 0.023
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
+ N +T + L L + L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 30.9 bits (70), Expect = 0.14
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLD-GLLRGLTKLQVFNMDFNQ 163
+LP+ L N +T+L GLL L L+ ++ N
Sbjct: 21 TWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66
Score = 30.2 bits (68), Expect = 0.31
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
L L+ N LT + L LRT L N
Sbjct: 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 29.4 bits (66), Expect = 0.57
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 58 FPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNN 93
FP +L + NNLT+L L L L L N
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 35.8 bits (83), Expect = 0.009
Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 54/253 (21%)
Query: 40 LITLLLVNNNITHIHENAF-------PPTIRKLHVGFNNLT-----SLNNSLRGL-TDLN 86
+ +L L N++ + + P + L++ N L+ L +L + +
Sbjct: 53 VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112
Query: 87 WLFLNNNRL-----KSLEGQLGTL-SKLQLLVIEQNQL---------EALPSDIQLFSQL 131
L L N + L + + L + N L + L + + + +
Sbjct: 113 VLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAA---IPANV 169
Query: 132 GSLYANNNRITSL------DGLLRGLTKLQVFNMDFNQIT-----MVRRDEFQNLHNLDS 180
SL N + S L + ++ N + + +++ S
Sbjct: 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229
Query: 181 ISLQNNQITS-----MNSSLSGLTKLAYLYLSHNQLTEF-------LLDDIRGLKRLRTV 228
++L N + + L L +YL ++ + L ++++ V
Sbjct: 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILV 289
Query: 229 DLSYNKINKFGTR 241
D + +I+ +
Sbjct: 290 DKNGKEIHPSHSI 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.020
Identities = 43/224 (19%), Positives = 74/224 (33%), Gaps = 60/224 (26%)
Query: 4 FSYFEDGHAVALNLI-DLEPETGSHPLTSDD--LKGT----PALITLLLVNNNIT-HIHE 55
F DG + ++ + S+ S+ L T PAL L+ +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL---TLMEKAAFEDLKS 1749
Query: 56 NAFPPTIRKL--H-VG-FNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
P H +G + L SL + + + L + + R G +Q
Sbjct: 1750 KGLIPADATFAGHSLGEYAALASLADVM-SIESL--VEVVFYR-----GMT-----MQ-- 1794
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANNNRIT------SLDGLLRGLTK-----LQVFNMD 160
A+P D S G + N R+ +L ++ + K +++ N
Sbjct: 1795 -------VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-- 1845
Query: 161 FN----QI----TMVRRDEFQNLHNLDSISLQNNQITSMNSSLS 196
+N Q + D N+ L+ I LQ I + SLS
Sbjct: 1846 YNVENQQYVAAGDLRALDTVTNV--LNFIKLQKIDIIELQKSLS 1887
Score = 30.8 bits (69), Expect = 0.51
Identities = 49/278 (17%), Positives = 81/278 (29%), Gaps = 100/278 (35%)
Query: 11 HAVALNLID-----LEPETGSHPLTSDDLKGTPA-LIT--LLLVNNNITHIHENAFPPTI 62
+A L + L T +DD TPA L+ L V++ + F +
Sbjct: 27 FFIASQLQEQFNKILPEPTEG--FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
Query: 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQL-----GTLSKLQLLVIEQNQ 117
F N +L N + +L +L TL K + L+ +N
Sbjct: 85 NLCLTEFENC----------------YLEGNDIHALAAKLLQENDTTLVKTKELI--KNY 126
Query: 118 LEAL-----PSDIQLFSQL--------GSLYA------NNNR------------------ 140
+ A P D + S L L A N +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 141 -ITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS-LQNNQIT--------- 189
I L L + +D ++ F L+ + L+N T
Sbjct: 187 LIKFSAETLSELIRT---TLDAEKV-------FT--QGLNILEWLENPSNTPDKDYLLSI 234
Query: 190 --SMNSSLSGLTKLAYLYLSHNQL---TEFLLDDIRGL 222
S L G+ +LA+ ++ L L ++G
Sbjct: 235 PISCP--LIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 32.9 bits (75), Expect = 0.044
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 143 SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN-NQITSMNSSLSGLTKL 201
L K+Q + + I + D + L ++ I L + I + L L++L
Sbjct: 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE--DGCLERLSQL 109
Query: 202 AYLYLSHNQL--------TEFLLDDIRGLKRLRTVDLSYNK 234
L S ++ T+ + + + L+ + LS
Sbjct: 110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 31.4 bits (71), Expect = 0.24
Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 10/157 (6%)
Query: 85 LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFS--QLGSLYANNNRIT 142
W L+ G L ++ + + FS ++ + +N+ I
Sbjct: 47 SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106
Query: 143 --SLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN-NQIT--SMNSSLSG 197
+L G+L +KLQ +++ +++ + NL ++L + + ++ + LS
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166
Query: 198 LTKLAYLYLSH-NQLTEFLLDDI--RGLKRLRTVDLS 231
++L L LS TE + + + ++LS
Sbjct: 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203
Score = 30.2 bits (68), Expect = 0.56
Identities = 28/180 (15%), Positives = 62/180 (34%), Gaps = 21/180 (11%)
Query: 64 KLHVGFNNLTSLNNSLRGLTD--LNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQN-QLEA 120
H + ++ S + L+ + ++L++L + LS + + +N L
Sbjct: 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146
Query: 121 LPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF-NQITM--VRRDEFQNLHN 177
L ++ S +L LL ++L N+ + T V+
Sbjct: 147 L--NLSGCSGFSE--------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196
Query: 178 LDSISLQ--NNQIT--SMNSSLSGLTKLAYLYLSH-NQLTEFLLDDIRGLKRLRTVDLSY 232
+ ++L + +++ + L +L LS L + L L+ + LS
Sbjct: 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.41
Identities = 4/16 (25%), Positives = 11/16 (68%)
Query: 114 EQNQLEALPSDIQLFS 129
E+ L+ L + ++L++
Sbjct: 18 EKQALKKLQASLKLYA 33
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 28.3 bits (63), Expect = 2.3
Identities = 15/93 (16%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 126 QLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185
++ S+L + +++ LD +LR L V I + L + L
Sbjct: 67 EIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMV-GKYLVP 125
Query: 186 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDD 218
++ +S + L E ++D+
Sbjct: 126 DESRGYLASFTTFLCYPALLQVWMNFKEAVVDE 158
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine
phosphatase, hydrolase; 1.26A {Homo sapiens}
Length = 144
Score = 26.4 bits (59), Expect = 6.7
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 6/30 (20%)
Query: 44 LLVNNNITHI------HENAFPPTIRKLHV 67
L N +THI ENAF +
Sbjct: 24 TLKKNKVTHILNVAYGVENAFLSDFTYKSI 53
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Mus musculus}
Length = 164
Score = 26.1 bits (58), Expect = 8.5
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 6/30 (20%)
Query: 44 LLVNNNITHI------HENAFPPTIRKLHV 67
LLV IT P + +L V
Sbjct: 32 LLVRAGITLCVNVSRQQPGPRAPGVAELRV 61
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure,
hydrolase; HET: EPE; 2.00A {Homo sapiens}
Length = 188
Score = 26.1 bits (58), Expect = 9.6
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 6/30 (20%)
Query: 44 LLVNNNITHI------HENAFPPTIRKLHV 67
+L +N IT + N I+ + V
Sbjct: 40 MLSSNQITMVINVSVEVVNTLYEDIQYMQV 69
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.379
Gapped
Lambda K H
0.267 0.0811 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,482,766
Number of extensions: 196307
Number of successful extensions: 4563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 836
Number of HSP's successfully gapped: 504
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)