RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4258
(245 letters)
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 75.0 bits (183), Expect = 2e-16
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 9/192 (4%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ 101
+L+ NN I+ I + +L + N L + +L LT+L L L NN++ +L
Sbjct: 201 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP- 258
Query: 102 LGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDF 161
L L+KL L + NQ+ + L + N L L + F
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYF 316
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221
N I+ + +L L + NN+++ + SSL+ LT + +L HNQ+++ L +
Sbjct: 317 NNISDI--SPVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISD--LTPLAN 371
Query: 222 LKRLRTVDLSYN 233
L R+ + L+
Sbjct: 372 LTRITQLGLNDQ 383
Score = 61.9 bits (149), Expect = 7e-12
Identities = 51/189 (26%), Positives = 94/189 (49%), Gaps = 9/189 (4%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLS 106
+N ++ I A + L N ++ + LT+L+ L LN N+LK + G L +L+
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDI-GTLASLT 241
Query: 107 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166
L L + NQ+ L + ++L L N+I+++ L GLT L ++ NQ+
Sbjct: 242 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPL-AGLTALTNLELNENQLED 299
Query: 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
NL NL ++L N I+ + S +S LTKL L+ ++N++++ + + L +
Sbjct: 300 --ISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354
Query: 227 TVDLSYNKI 235
+ +N+I
Sbjct: 355 WLSAGHNQI 363
Score = 41.9 bits (97), Expect = 3e-05
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L L L NNI+ I + +++L N ++ + +SL LT++NWL +N++ L
Sbjct: 309 LTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDLT 367
Query: 100 GQLGTLSKLQLLVIEQN 116
L L+++ L +
Sbjct: 368 P-LANLTRITQLGLNDQ 383
Score = 35.7 bits (81), Expect = 0.004
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 174 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+L + ++ I S+ + L L + S+NQLT+ + ++ L +L + ++ N
Sbjct: 42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNN 98
Score = 34.6 bits (78), Expect = 0.009
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNN 93
+ L L NN ++ + A I L G N ++ L L LT + L LN+
Sbjct: 325 VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQ 383
Score = 33.8 bits (76), Expect = 0.016
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQI 164
L++ V+ + + S L Q+ +L A+ I S+DG + L L N NQ+
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQL 78
Query: 165 TMVRRDEFQNLHNLDSI 181
T + +NL L I
Sbjct: 79 TDI--TPLKNLTKLVDI 93
Score = 33.4 bits (75), Expect = 0.017
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 174 NLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
L L +T S + L ++ L + +D + L L ++ S N
Sbjct: 20 ALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 76
Query: 234 KI 235
++
Sbjct: 77 QL 78
Score = 29.6 bits (65), Expect = 0.40
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 64 KLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS 123
K +G N+T S L + L + +KS++G + L+ L + NQL +
Sbjct: 26 KTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP 83
Score = 26.1 bits (56), Expect = 4.7
Identities = 51/252 (20%), Positives = 91/252 (36%), Gaps = 27/252 (10%)
Query: 5 SYFEDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRK 64
F D L + ++ DL + TL I I + + +
Sbjct: 14 QIFTDTALAEKMKTVLGKTNVTDTVSQTDLD---QVTTLQADRLGIKSIDGVEYLNNLTQ 70
Query: 65 LHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSD 124
++ N LT + L+ LT L + +NNN++ + + L + + P
Sbjct: 71 INFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129
Query: 125 IQLFSQLGSLYANN------------------NRITSLDGLLRGLTKLQVFNMDFNQITM 166
L +N + L LT L+ ++ N+++
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189
Query: 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
L NL+S+ NNQI+ + + L LT L L L+ NQL + + + L L
Sbjct: 190 --ISVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 244
Query: 227 TVDLSYNKINKF 238
+DL+ N+I+
Sbjct: 245 DLDLANNQISNL 256
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 65.1 bits (157), Expect = 5e-13
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 10/192 (5%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKSLE-GQLGT 104
+ + + ++ PP L + N +T + + + L +L+ L L NN++ + G
Sbjct: 19 DLGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVF---NMDF 161
L KL+ L + +NQL+ LP + Q L + N IT + + + +
Sbjct: 78 LVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135
Query: 162 NQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRG 221
+ + + FQ + L I + + IT++ L L L+L N++T+ ++G
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKG 193
Query: 222 LKRLRTVDLSYN 233
L L + LS+N
Sbjct: 194 LNNLAKLGLSFN 205
Score = 61.6 bits (148), Expect = 8e-12
Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 14/223 (6%)
Query: 27 HPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNS----LRGL 82
++ L L L N + + E P T+++L V N +T + S L +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQM 126
Query: 83 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 142
+ G + KL + I + +P L L L+ + N+IT
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKIT 184
Query: 143 SLD-GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKL 201
+D L+GL L + FN I+ V N +L + L NN++ + L+ +
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244
Query: 202 AYLYLSHNQLTEF------LLDDIRGLKRLRTVDLSYNKINKF 238
+YL +N ++ V L N + +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287
Score = 52.0 bits (123), Expect = 2e-08
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 4/214 (1%)
Query: 29 LTSDDLKGTPALITLLLVNNNITHIHENAFP--PTIRKLHVGFNNLTSLNNSLRGLTDLN 86
+ D K L TL+L+NN I+ I AF + +L++ N L L +
Sbjct: 46 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL 105
Query: 87 WLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDG 146
N K + L+++ ++ + N L++ + F + L T++
Sbjct: 106 R-VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164
Query: 147 LLRG-LTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLY 205
+ +G L ++D N+IT V + L+NL + L N I+++++ T
Sbjct: 165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224
Query: 206 LSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFG 239
+N + + K ++ V L N I+ G
Sbjct: 225 HLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 258
Score = 41.9 bits (97), Expect = 3e-05
Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 27/148 (18%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQN 174
LE +P D+ L NN+IT + DG + L L + N+I+ + F
Sbjct: 20 LGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77
Query: 175 LHNLDSISLQNNQITSMNSSL------------------------SGLTKLAYLYLSHNQ 210
L L+ + L NQ+ + + + L + +
Sbjct: 78 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 211 LTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ +G+K+L + ++ I
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTI 165
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 55.9 bits (133), Expect = 6e-10
Identities = 59/213 (27%), Positives = 88/213 (41%), Gaps = 8/213 (3%)
Query: 27 HPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDL 85
HP+ + + + + N+T + + P LH+ N L + +L T L
Sbjct: 1 HPICE--VSKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRL 57
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 145
L L+ L L+ GTL L L + NQL++LP Q L L + NR+TSL
Sbjct: 58 TQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116
Query: 146 G-LLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAY 203
LRGL +LQ + N++ + L+ +SL NN +T + L+GL L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 204 LYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
L L N L + G L L N
Sbjct: 177 LLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208
Score = 42.4 bits (98), Expect = 2e-05
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 171 EFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDL 230
E + + ++ +T++ L L+LS N L F L + RL ++L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 231 SYNKINKF 238
++ K
Sbjct: 63 DRAELTKL 70
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 48.9 bits (115), Expect = 9e-08
Identities = 39/212 (18%), Positives = 73/212 (34%), Gaps = 12/212 (5%)
Query: 23 ETGSHPLTSDDLKGTPAL---ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSL 79
ET + P + A I L ++T +I ++ +++ S+ +
Sbjct: 6 ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-I 64
Query: 80 RGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 139
+ L ++ LFLN N+L L + L+ + + +
Sbjct: 65 QYLPNVTKLFLNGNKLT------DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118
Query: 140 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
+ + GL L + + + + S L+GLT
Sbjct: 119 LEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT 178
Query: 200 KLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
KL LYLS N +++ L + GLK L ++L
Sbjct: 179 KLQNLYLSKNHISD--LRALAGLKNLDVLELF 208
Score = 33.8 bits (76), Expect = 0.011
Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 9/175 (5%)
Query: 64 KLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPS 123
K ++ ++T + L ++ + NN+ +KS++G + L + L + N+L +
Sbjct: 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKL----T 81
Query: 124 DIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISL 183
DI+ + L +L + L ++ ++ + + +L L+S+ L
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141
Query: 184 QNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
NN+IT + + + + GL +L+ + LS N I+
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISD---IVPLAGLTKLQNLYLSKNHISDL 193
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 49.1 bits (115), Expect = 1e-07
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 82 LTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRI 141
L L ++NN+L L L +L N L +P L L L+ N +
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLIA---SFNHLAEVPE---LPQNLKQLHVEYNPL 336
Query: 142 TSLDGLLRGLTKLQVFN 158
+ + L++ +
Sbjct: 337 REFPDIPESVEDLRMNS 353
Score = 48.7 bits (114), Expect = 2e-07
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 52 HIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLL 111
PP++ +L+V N L L L L + N L + L +L +
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLIELPALPPRLERLI---ASFNHLAEVPELPQNLKQLHV- 331
Query: 112 VIEQNQLEALPSDIQLFSQLGSLYANN 138
E N L P + + L N+
Sbjct: 332 --EYNPLREFPD---IPESVEDLRMNS 353
Score = 47.5 bits (111), Expect = 5e-07
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 38 PALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKS 97
P+L L + NN + + A PP + +L FN+L + + L L+ + N L+
Sbjct: 284 PSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPELPQNLKQLH---VEYNPLRE 338
Query: 98 LEGQLGTLSKLQL 110
++ L++
Sbjct: 339 FPDIPESVEDLRM 351
Score = 47.1 bits (110), Expect = 6e-07
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 216
N + R +L+ +++ NN++ + + L + L S N L E
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLER---LIASFNHLAEV-- 319
Query: 217 DDIRGLKRLRTVDLSYNKINKF 238
+ L+ + + YN + +F
Sbjct: 320 --PELPQNLKQLHVEYNPLREF 339
Score = 43.7 bits (101), Expect = 8e-06
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 128 FSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
L L +NN++ L L L +L FN + V + NL + ++ N
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVP----ELPQNLKQLHVEYNP 335
Query: 188 ITSMNSSLSGLTKL 201
+ + L
Sbjct: 336 LREFPDIPESVEDL 349
Score = 41.7 bits (96), Expect = 4e-05
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLD 145
L+ N + L+ L + N+L LP+ L +L L A+ N + +
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVP 320
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNL 178
L + L +L ++++N + D +++ +L
Sbjct: 321 ELPQNLKQL---HVEYNPLREF-PDIPESVEDL 349
Score = 32.5 bits (72), Expect = 0.038
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 80 RGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNN 139
R +L LNN L SL L L N L LP L L SL +NN
Sbjct: 38 RQAHELE---LNNLGLSSLPELPPHLESLVA---SCNSLTELPE---LPQSLKSLLVDNN 88
Query: 140 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
+ +L L L L V N ++ ++ F + ++D+ SL+ +
Sbjct: 89 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPS 141
Score = 32.5 bits (72), Expect = 0.041
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 157 FNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLL 216
+ + ++ N + S L L +S+N+L E
Sbjct: 242 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-- 299
Query: 217 DDIRGLKRLRTVDLSYNKINKF 238
RL + S+N + +
Sbjct: 300 --PALPPRLERLIASFNHLAEV 319
Score = 32.5 bits (72), Expect = 0.041
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
L L N ++ + E PP + L N+LT L + L L N L L
Sbjct: 40 AHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 97
Query: 100 GQL 102
L
Sbjct: 98 PLL 100
Score = 29.8 bits (65), Expect = 0.32
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 127 LFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
L Q L NN ++SL L L L N +T + + +L S+ + NN
Sbjct: 36 LDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLTELP----ELPQSLKSLLVDNN 88
Query: 187 QITSMNSSLSGL 198
+ +++ L
Sbjct: 89 NLKALSDLPPLL 100
Score = 28.6 bits (62), Expect = 0.72
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 7/66 (10%)
Query: 70 NNLTSLNNSLRGLT-------DLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP 122
L + GL+ L L + N L L +L L + L LP
Sbjct: 38 RQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 97
Query: 123 SDIQLF 128
++
Sbjct: 98 PLLEYL 103
Score = 26.7 bits (57), Expect = 3.2
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 199 TKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ L L++ L+ L ++ L ++ S N + +
Sbjct: 38 RQAHELELNNLGLSS--LPEL--PPHLESLVASCNSLTEL 73
Score = 26.3 bits (56), Expect = 4.0
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 145 DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYL 204
D L R +L++ N+ + + + +L +L N +T + L L
Sbjct: 34 DCLDRQAHELELNNLGLSSLP----ELPPHLESLV---ASCNSLTELPELPQSLK---SL 83
Query: 205 YLSHNQLTEF 214
+ +N L
Sbjct: 84 LVDNNNLKAL 93
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 45.8 bits (107), Expect = 1e-06
Identities = 37/226 (16%), Positives = 76/226 (33%), Gaps = 24/226 (10%)
Query: 26 SHPLTSDDLKGTPAL---ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGL 82
+ P + + PAL I + +N+T A I L +T++ ++ L
Sbjct: 4 TQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYL 62
Query: 83 TDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT 142
+L L L +N++ L +L + + L +
Sbjct: 63 NNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122
Query: 143 SLDGLLRGLTKL-----------------QVFNMDFNQITMVRRDEFQNLHNLDSISLQN 185
+ L L L + + + NL L ++ +
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182
Query: 186 NQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLS 231
N+I+ + S L+ L L ++L +NQ+++ + + L V L+
Sbjct: 183 NKISDI-SPLASLPNLIEVHLKNNQISD--VSPLANTSNLFIVTLT 225
Score = 39.2 bits (90), Expect = 2e-04
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 148 LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLS 207
L L+KL D N+I+ + +L NL + L+NNQI+ + S L+ + L + L+
Sbjct: 169 LANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLT 225
Query: 208 H 208
+
Sbjct: 226 N 226
Score = 32.3 bits (72), Expect = 0.032
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSI 181
+ + S+L +L A++N+I+ + L L L ++ NQI+ V N NL +
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISPL-ASLPNLIEVHLKNNQISDV--SPLANTSNLFIV 222
Query: 182 SLQN 185
+L N
Sbjct: 223 TLTN 226
Score = 30.0 bits (66), Expect = 0.19
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLS 106
N ++ + A + L N ++ ++ L L +L + L NN++ + L S
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSP-LANTS 217
Query: 107 KLQLLVIEQNQ 117
L ++ + NQ
Sbjct: 218 NLFIVTLT-NQ 227
Score = 29.6 bits (65), Expect = 0.31
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 27 HPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLN 86
L L TL +N I+ I A P + ++H+ N ++ + + L ++L
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV-SPLANTSNLF 220
Query: 87 WLFLNN 92
+ L N
Sbjct: 221 IVTLTN 226
Score = 26.1 bits (56), Expect = 3.3
Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 44 LLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLG 103
L ++ N T + N S L L+ L L ++N++ + L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LA 192
Query: 104 TLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANN 138
+L L + ++ NQ+ + + S L + N
Sbjct: 193 SLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 43.3 bits (101), Expect = 4e-06
Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 70 NNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFS 129
+ L + D + L+ L+S L + +L + L +
Sbjct: 7 EQVEQLKLIMSKRYDGSQQALDLKGLRSDPD-LVAQNIDVVLNRRSSMAATLRIIEENIP 65
Query: 130 QLGSLYANNNRITSLDGL---LRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNN 186
+L SL +NNR+ LD + ++ L++ N+ N++ R + L+ + L N
Sbjct: 66 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125
Query: 187 QITSMNSSLSG 197
++ S
Sbjct: 126 SLSDTFRDQST 136
Score = 35.2 bits (80), Expect = 0.002
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 5/123 (4%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNL 175
Q+E L + + + S L V N + +R +N+
Sbjct: 7 EQVEQLKLIMSKRYDGSQQALDLKGLRSDPDL-VAQNIDVVLNRRSSMAATLR-IIEENI 64
Query: 176 HNLDSISLQNNQITSMNS---SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSY 232
L S++L NN++ ++ + L L LS N+L D +L + L
Sbjct: 65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDG 124
Query: 233 NKI 235
N +
Sbjct: 125 NSL 127
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 43.8 bits (101), Expect = 1e-05
Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 177 NLDSISLQNNQITS--MNSSLSGLTKLAYLYLSHNQLTE----FLLDDIRGLKRLRTVDL 230
++ S+ +Q +++ L L + + L LTE + +R L ++L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 231 SYNKINKFG 239
N++ G
Sbjct: 63 RSNELGDVG 71
Score = 41.1 bits (94), Expect = 7e-05
Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 11/91 (12%)
Query: 154 LQVFNMDFNQITMVRRDE-FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLS 207
+Q ++ +++ R E L + L + +T ++S+L LA L L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 208 HNQLTEFLLDDI-RGLK----RLRTVDLSYN 233
N+L + + + +GL+ +++ + L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
Score = 38.0 bits (86), Expect = 8e-04
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 172 FQNLHNLDSISLQNNQIT-----SMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-RGLK-- 223
Q L + L + ++ S+ ++L L L LS+N L + + + ++
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 224 --RLRTVDLSYNKINK 237
L + L ++
Sbjct: 425 GCLLEQLVLYDIYWSE 440
Score = 33.8 bits (75), Expect = 0.016
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 191 MNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSYNKINKFG 239
+ L L+L+ ++ L + LR +DLS N + G
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 413
Score = 33.8 bits (75), Expect = 0.018
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 145 DGLLRGLTKLQVFNMDFNQIT----MVRRDEFQNLHNLDSISLQNNQITS------MNSS 194
GL + + L+V + ++ H+L + L NN + + S
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 195 LSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
L L L +E + D ++ L++ +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 29.2 bits (63), Expect = 0.46
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 108 LQLLVIEQNQL--EALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGLTKLQVFNMD 160
+Q L I+ +L + L Q + ++ +T + LR L N+
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 161 FNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
N++ V S +Q + +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
Score = 29.2 bits (63), Expect = 0.47
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 62 IRKLHVGFNNLTS--LNNSLRGLTDLNWLFLNNNRL-----KSLEGQLGTLSKLQLLVIE 114
I+ L + L+ L L + L++ L K + L L L +
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 115 QNQLEALPSDIQLFSQLGSLYANNNRITSLD 145
N+L D+ + L L + +I L
Sbjct: 64 SNEL----GDVGVHCVLQGLQTPSCKIQKLS 90
Score = 25.3 bits (53), Expect = 8.5
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 34 LKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSL--RGLTDLNWLFLN 91
L +L L L NN + ++R+ L + L L +
Sbjct: 393 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKD 452
Query: 92 NNRLKSL 98
L+ +
Sbjct: 453 KPSLRVI 459
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 43.3 bits (100), Expect = 1e-05
Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 31/226 (13%)
Query: 41 ITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNNRLKS-- 97
+T + + P +++ + N ++ + S R +L L+L++N L
Sbjct: 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 98 ------------------------LEGQLGTLSKLQLLVIEQNQLEALPSDIQL-FSQLG 132
L +L L +++ L+ L + + L
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 133 SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITS- 190
LY +N + +L D R L L + N+I+ V F+ LH+LD + L N++
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 191 MNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ L +L LYL N L+ + + L+ L+ + L+ N
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 42.1 bits (97), Expect = 3e-05
Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 9/154 (5%)
Query: 85 LNWLFLNNNRLKSL-EGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLY----ANNN 139
L +L+L +N L++L + L L L + N++ ++P F L SL N
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA--FRGLHSLDRLLLHQNR 188
Query: 140 RITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLT 199
R L +L + N ++ + + L L + L +N +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248
Query: 200 KLAYLYLSHNQLTEFLLDDIRG--LKRLRTVDLS 231
L S +++ L + G LKRL DL
Sbjct: 249 WLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 40.9 bits (95), Expect = 2e-05
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 109 QLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVR 168
++L + L L ++ + L ++NR+ +L L L L+V N + V
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV- 58
Query: 169 RDEFQNLHNLDSISLQNNQITSMN--SSLSGLTKLAYLYLSHNQLTE 213
D NL L + L NN++ L +L L L N L +
Sbjct: 59 -DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
Score = 40.5 bits (94), Expect = 2e-05
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Query: 134 LYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNS 193
L+ + +T L L L + ++ N++ L L+ + +N + +++
Sbjct: 3 LHLAHKDLTVLCHL-EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVDG 60
Query: 194 SLSGLTKLAYLYLSHNQLTEF-LLDDIRGLKRLRTVDLSYNKI 235
+ L L +N+L + + + RL ++L N +
Sbjct: 61 VANLPRLQ-ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
Score = 39.3 bits (91), Expect = 7e-05
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 24/139 (17%)
Query: 63 RKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALP 122
R LH+ +LT L + L L + L L++NRL++L L L L++L N LE +
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 123 SDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSIS 182
+L L NNR+ + + L ++
Sbjct: 60 GVAN-LPRLQELLLCNNRLQQSAAI----------------------QPLVSCPRLVLLN 96
Query: 183 LQNNQITSMNSSLSGLTKL 201
LQ N + L ++
Sbjct: 97 LQGNSLCQEEGIQERLAEM 115
Score = 33.1 bits (75), Expect = 0.008
Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQ 101
L L + ++T + + L + N L +L +L L L L ++N L++++G
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 102 LGTLSKLQLLVIEQNQLEALP--SDIQLFSQLGSLYANNNRITSLDGLLRGLTKL 154
+LL + N+L+ + +L L N + +G+ L ++
Sbjct: 62 ANLPRLQELL-LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Score = 28.5 bits (63), Expect = 0.33
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 203 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
L+L+H LT L + L + +DLS+N++
Sbjct: 2 VLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL 35
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 40.7 bits (94), Expect = 3e-05
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 168 RRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
+ ++ N + L+ +I + + + L + + S N++ LD L+RL+T
Sbjct: 10 QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKT 67
Query: 228 VDLSYN 233
+ ++ N
Sbjct: 68 LLVNNN 73
Score = 36.5 bits (83), Expect = 9e-04
Identities = 24/139 (17%), Positives = 41/139 (29%), Gaps = 5/139 (3%)
Query: 45 LVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGT 104
L I + R+L + + + N L + + ++N ++ L+G
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62
Query: 105 LSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGL-----LRGLTKLQVFNM 159
LLV Q L L NN + L L L+ LT L +
Sbjct: 63 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122
Query: 160 DFNQITMVRRDEFQNLHNL 178
R + +
Sbjct: 123 PVTNKKHYRLYVIYKVPQV 141
Score = 31.8 bits (71), Expect = 0.036
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 193 SSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKF 238
+ + + L L ++ + + L + +D S N+I K
Sbjct: 12 AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL 56
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 41.7 bits (96), Expect = 4e-05
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 158 NMDFNQITMVRRDEFQNLHNLDSISLQNNQIT-SMNSSLSGLTKLAYLYLSHNQLTEFLL 216
+ NL+ + L+NN+I ++ L+ L L L +S N L +
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EI 284
Query: 217 DDIRGLKRLRTVDLSYNK 234
L+R + NK
Sbjct: 285 PQGGNLQRFDVSAYANNK 302
Score = 41.3 bits (95), Expect = 6e-05
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 155 QVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQL 211
++ N+I L L S+++ N + L + ++N+
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Score = 35.5 bits (80), Expect = 0.004
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLT-SLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTL 105
N+ + + + L + N + +L L L L+ L ++ N L Q G L
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290
Query: 106 SKLQLLVIEQNQL 118
+ + N+
Sbjct: 291 QRFDVSAYANNKC 303
Score = 35.1 bits (79), Expect = 0.005
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 137 NNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
NN +L L L L N+ FN + + NL D + NN+
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNK 302
Score = 32.8 bits (73), Expect = 0.028
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 203 YLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKI 235
L L +N++ L + LK L ++++S+N +
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 32.8 bits (73), Expect = 0.029
Identities = 11/55 (20%), Positives = 15/55 (27%)
Query: 86 NWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNR 140
NN +L L L L L + N L + NN+
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 26.6 bits (57), Expect = 2.8
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 116 NQLE-ALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ 163
N++ LP + L SL + N + L + V N+
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 39.5 bits (90), Expect = 2e-04
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 154 LQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM-NSSLSGLTKLAYLYLSHNQ 210
++ D N + + D F + + +I S+ + L L KL + +
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 38.0 bits (86), Expect = 5e-04
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 194 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNK 234
G + L +S ++ + LK+LR K
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 36.4 bits (82), Expect = 0.002
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 146 GLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQ 187
+ G + + ++ +I + +NL L + S N +
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 33.3 bits (74), Expect = 0.015
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 177 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYN 233
+ Q +++T + S L L +L G L +++S N
Sbjct: 9 SNRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63
Score = 29.9 bits (65), Expect = 0.26
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 42 TLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL-NNSLRGLTDLNWLFLNNN 93
L + +T I + P +L L + + G DL + ++ N
Sbjct: 12 VFLCQESKVTEIPSD-LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63
Score = 29.5 bits (64), Expect = 0.29
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 133 SLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSM 191
+++T + L R +L ++ ++++ F +L+ I + N + +
Sbjct: 12 VFLCQESKVTEIPSDLPRNAIEL---RFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68
Score = 29.5 bits (64), Expect = 0.31
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYA-NNNRITSL 144
S +L I + ++ +LPS L L A + + L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKL 238
Score = 29.1 bits (63), Expect = 0.42
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 27 HPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSL 75
L +D G + L + I + + NL L
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238
Score = 28.7 bits (62), Expect = 0.63
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 128 FSQLGSLYANNNRITSL-DGLLRGLTKLQVFNM 159
S L + RI SL L L KL+ +
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLKKLRARST 232
Score = 27.6 bits (59), Expect = 1.2
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 116 NQLEALPSDIQLFSQLGSLYANNNRITSL-DGLLRGLTKLQVFNMDFNQITM 166
+++ +PSD+ L ++ + G G L+ + N +
Sbjct: 18 SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 38.1 bits (87), Expect = 3e-04
Identities = 29/188 (15%), Positives = 66/188 (35%), Gaps = 9/188 (4%)
Query: 40 LITLLLVNNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
+ +L N+T + L + S++ + L +L + +NN+L +
Sbjct: 20 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDIT 78
Query: 100 GQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNM 159
+ +L+ + P +L+ N L L +L++ +
Sbjct: 79 PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI 219
+ I+ + N S + + L+ LT L L +S N++++ + +
Sbjct: 139 TISDISALSGLTSLQQLNFSSNQVTDL------KPLANLTTLERLDISSNKVSD--ISVL 190
Query: 220 RGLKRLRT 227
L L +
Sbjct: 191 AKLTNLES 198
Score = 33.9 bits (76), Expect = 0.008
Identities = 36/189 (19%), Positives = 69/189 (36%), Gaps = 9/189 (4%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLEGQLGTLS 106
+ I I + K +G N+T S L + L + +KS++G + L+
Sbjct: 5 DTPINQIFTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLN 62
Query: 107 KLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITM 166
L + NQ +DI L L + + + + +
Sbjct: 63 NLTQINFSNNQ----LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 118
Query: 167 VRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLR 226
D +NL NL+ + L +N I+ +++ + + S+ L + L L
Sbjct: 119 TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD---LKPLANLTTLE 175
Query: 227 TVDLSYNKI 235
+D+S NK+
Sbjct: 176 RLDISSNKV 184
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 36.6 bits (83), Expect = 0.001
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRT 227
+ I M+++LS L +L LS N + + + + G++ LR
Sbjct: 29 ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGMENLRI 74
Score = 31.6 bits (70), Expect = 0.053
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 117 QLEALPSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLH 176
E S + ++ L+ I +D L L + + N I + +
Sbjct: 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGME 70
Query: 177 NL 178
NL
Sbjct: 71 NL 72
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 35.1 bits (79), Expect = 0.003
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 176 HNLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQ-LTEFLLDDIRGLKRLRTVDLSYN 233
H + + L G L LY+ + Q L L D+RGL LR + + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66
Score = 31.3 bits (69), Expect = 0.062
Identities = 24/139 (17%), Positives = 45/139 (32%), Gaps = 5/139 (3%)
Query: 65 LHVGFNNLTSLNNSLRGLTDLNWLFL-NNNRLKSLE-GQLGTLSKLQLL-VIEQNQLEAL 121
L + + L G +L L++ N L+ LE L L +L+ L +++
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72
Query: 122 PSDIQLFSQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQITMVRR-DEFQNLHNLDS 180
P +L L + N + SL LQ + N + Q
Sbjct: 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGL 132
Query: 181 ISLQNNQIT-SMNSSLSGL 198
+ ++ L+ +
Sbjct: 133 GGVPEQKLQCHGQGPLAHM 151
Score = 29.4 bits (64), Expect = 0.28
Identities = 14/109 (12%), Positives = 32/109 (29%), Gaps = 1/109 (0%)
Query: 129 SQLGSLYANNNRITSLDGLLRGLTKLQVFNMDFNQ-ITMVRRDEFQNLHNLDSISLQNNQ 187
L + L G L ++ Q + + + + L L ++++ +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 188 ITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKIN 236
+ + T E L L+ + LS N ++
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 32.2 bits (71), Expect = 0.049
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 177 NLDSISLQNNQITSMNSSLSGLTKLAYLYLSHNQLT----EFLLDDIRGLKRLRTVDLSY 232
+L ++ S+ + L + + LS N + +L ++I K L + S
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 233 NKINKFG 239
+
Sbjct: 69 IFTGRVK 75
Score = 31.4 bits (69), Expect = 0.083
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 97 SLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT-----SLDGLLRGL 151
S+EG+ L+L I +++ + + + + + N I L +
Sbjct: 4 SIEGK-----SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 58
Query: 152 TKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMN 192
L++ V+ + + L L L+ ++ ++
Sbjct: 59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 99
Score = 31.0 bits (68), Expect = 0.13
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 160 DFNQITMVRRDEFQNLHNLDSISLQNNQITSM------NSSLSGLTKLAYLYLSHNQLTE 213
+V L ++ LQ N+I + L +L L+ N+ +E
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316
Query: 214 F--LLDDIRGLKRLR 226
++D+IR + R
Sbjct: 317 EDDVVDEIREVFSTR 331
Score = 29.8 bits (65), Expect = 0.26
Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 180 SISLQNNQITSMNSSLSGLTKLAYLYLSHNQLTEFLLDDI-----RGLKRLRTVDLSYNK 234
+S + S L L L +N++ + + + L ++L+ N+
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 313
Query: 235 INKFG 239
++
Sbjct: 314 FSEED 318
Score = 27.9 bits (60), Expect = 1.1
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 78 SLRGLTDLNWLFLNNNRLKSLEGQLGTLSKLQLLVIEQNQL-----EALPSDIQLFSQLG 132
S+ G L + KS+ L ++ +V+ N + L +I L
Sbjct: 4 SIEGK-SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 62
Query: 133 SLYANNNRITSLDG 146
++ +
Sbjct: 63 IAEFSDIFTGRVKD 76
Score = 26.0 bits (55), Expect = 4.2
Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 47 NNNITHIHENAFPPTIRKLHVGFNNLT-----SLNNSLRG-LTDLNWLFLNNNRLKSLEG 100
+ ++ L + +N + +L + + DL +L LN NR +
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 319
Query: 101 QLGTLSKL 108
+ + ++
Sbjct: 320 VVDEIREV 327
Score = 25.2 bits (53), Expect = 7.4
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 194 SLSGLTKLAYLYLSHNQLTEFLLDDIRGLKRLRTVDLSYNKINKFGTR 241
S+ G L ++ + + ++ + LS N I R
Sbjct: 4 SIEGK-SLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAAR 49
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 28.9 bits (63), Expect = 0.55
Identities = 28/209 (13%), Positives = 58/209 (27%), Gaps = 17/209 (8%)
Query: 40 LITLLLVNNNITHIHENAFPPT-IRKLHVGFNNLT--SLNNSLRGLTDLNWLFLNNNRL- 95
+I + + F P ++ + + + + +L+ L + L L L RL
Sbjct: 25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS 84
Query: 96 KSLEGQLGTLSKLQLLVIEQNQLEALPSDIQLFSQLGSLYANNNRIT------------S 143
+ L S L L + + + L S L N +
Sbjct: 85 DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 144
Query: 144 LDGLLRGLTKLQVFNMDFNQITMVRRDEFQNLHNLDSISLQNNQITSMNSSLSGLTKLAY 203
L + + + + +S L L +
Sbjct: 145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 204
Query: 204 LYLSH-NQLTEFLLDDIRGLKRLRTVDLS 231
L LS + L ++ + L+T+ +
Sbjct: 205 LSLSRCYDIIPETLLELGEIPTLKTLQVF 233
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 25.8 bits (57), Expect = 1.2
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 50 ITHIHENAFPPTIRKL--HVGFNNLTSLNNSLRGLTDLNWLFLNNNRLKSLE 99
HI + PPT ++ +GF + + L+ L + + + + +
Sbjct: 15 RDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEIVSGASRGIR 66
>d2r7da2 b.40.4.16 (A:3-403) Ribonuclease II family protein DR0020
{Deinococcus radiodurans [TaxId: 1299]}
Length = 401
Score = 26.5 bits (57), Expect = 3.0
Identities = 9/57 (15%), Positives = 15/57 (26%)
Query: 8 EDGHAVALNLIDLEPETGSHPLTSDDLKGTPALITLLLVNNNITHIHENAFPPTIRK 64
+ L+ S L L TP LL+ + + +R
Sbjct: 5 TPAQRTEVELLARGRADKSRVLRDLKLPETPEAAHALLLRLGVWDEARTPYADRLRA 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.379
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 816,035
Number of extensions: 34492
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 113
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)