BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4259
(203 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 134/253 (52%), Gaps = 69/253 (27%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
QQT +D +E VK LK KI+ EKG +++A++Q+LIYAGKIL DD ++ YNIDE KFI
Sbjct: 10 QQTFQIEIDPEETVKALKLKIEVEKGKDFVADHQRLIYAGKILLDDNKINSYNIDEKKFI 69
Query: 76 VVMLSKPK-------PTPAPYSGPSDPTQPAGQE------SEATRPATA----------- 111
V+M++KPK T P +G S T + E +P TA
Sbjct: 70 VIMVTKPKVSESQPTSTSIPEAGESASTDSGDAKPKTVPPEEVVKPTTAETERVTETPNT 129
Query: 112 TSDSMLKVFFERVNPYG----------------------------------------GES 131
TSD+ L+ + + G
Sbjct: 130 TSDAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLITGIPEELLHEQEAEESSD 189
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
EDPLAFLR QPQFQQMR V+QQNP LL VLQQIGQ+NPALL++IS +QEAFVRMLNEPV
Sbjct: 190 EDPLAFLRDQPQFQQMRAVIQQNPNLLNAVLQQIGQTNPALLQVISQHQEAFVRMLNEPV 249
Query: 192 ----AGDRRNKNV 200
AG ++NV
Sbjct: 250 NPSAAGVASDENV 262
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 126/240 (52%), Gaps = 65/240 (27%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
QQT +D QE VK LK KI+ EKG +Y A+ Q+LIYAGKIL DD L YNIDE KFI
Sbjct: 10 QQTFQIEIDPQETVKALKLKIEVEKGKDYAADNQRLIYAGKILLDDNKLHTYNIDEKKFI 69
Query: 76 VVMLSKPK--------PTPAPYSGPSDPT----------------QPAGQESEATRPATA 111
V+M++KPK T AP +G S T QPA + A+ P
Sbjct: 70 VIMVTKPKTSDNQQASSTSAPEAGESASTESGDGKSKVVEEKPKPQPAAEPERASEPPVT 129
Query: 112 TSD---------------------SMLKVFF---ERVNPY----------------GGES 131
+++ L+ F ER Y
Sbjct: 130 SNEPDFESTVQSIMDMGYNRQQVEQALRASFNNRERAVEYLITGIPEELLQEQEAEESAD 189
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
EDPL FLR QPQFQQMR V+QQNP LL TVLQQIGQ+NPALL+ IS +Q+AFVRMLNEPV
Sbjct: 190 EDPLGFLRDQPQFQQMRAVIQQNPNLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPV 249
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 119/245 (48%), Gaps = 72/245 (29%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT+ +D ++ VK LKEKI++E+G + + QKLIYAGKIL DD + EY IDE F
Sbjct: 10 QQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIKEYKIDERNF 69
Query: 75 IVVMLSK-------PKPT----PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF-- 121
+VVM+SK +PT P + SD +Q G ++ + A ++ML
Sbjct: 70 VVVMVSKVGAGNQTHRPTVSSRPLAFCSSSDGSQ--GLDASSALVTGAEYEAMLTEIISM 127
Query: 122 ----ERV---------NPYGG--------------------------ESEDP-------- 134
ERV NP+ +E P
Sbjct: 128 GYERERVVAALRASFNNPHRAVEYLLTGIPSSPVQESNPPAQAPAPLPTESPASPAEGCF 187
Query: 135 --------LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
LAFLR QPQF MR +QQNP LL +LQQ+GQ NP LL+ I+ +QE F++M
Sbjct: 188 PACPGENPLAFLRNQPQFLHMRQAIQQNPNLLSALLQQLGQENPQLLQQINQHQERFIQM 247
Query: 187 LNEPV 191
LNEPV
Sbjct: 248 LNEPV 252
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 112/247 (45%), Gaps = 73/247 (29%)
Query: 23 LDVQEEVKQLKEKIQSEKGS-EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
LD + ++K KI EKG EY E QKLIY GK+L D Q + E ID SKF+VVM+++
Sbjct: 39 LDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVEEVMIDPSKFVVVMIAR 98
Query: 82 PKPTPAPY--------------------------SGPSDPTQPAGQESEATRPATAT--- 112
KP AP SGPS P P E A A
Sbjct: 99 KKPIGAPVESTPQPSNLQIPAGAQVTTAPVSVADSGPSTPQNPDDLTPEQEETAQAIVAM 158
Query: 113 ---SDSMLKV----FF--ERVNPY-----------GGESEDP------------LAFLRT 140
D +++ FF +R Y GG E L FLR
Sbjct: 159 GYPRDKVIRALRASFFNGDRAVEYLCSGIPEEEDLGGHQESAEHEEGERAQGLGLDFLRQ 218
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE----------- 189
PQF+Q+R +VQ NP +LP ++QQI QSNPAL+E I +NQE FV +LN
Sbjct: 219 LPQFEQLRELVQSNPAILPQIIQQIAQSNPALMEAIQNNQEEFVNLLNNGSVSSGGGGVA 278
Query: 190 PVAGDRR 196
P AG++R
Sbjct: 279 PSAGEQR 285
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 109/230 (47%), Gaps = 64/230 (27%)
Query: 23 LDVQEEVKQLKEKIQSEKGS-EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
LD + ++K KI EKG EY E QKLIY GK+L D Q + E ID SKF+V+M+++
Sbjct: 17 LDPHLTIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVEEVMIDPSKFVVIMIAR 76
Query: 82 PKP---TPAPYS-GPSDPTQPAGQESEATRPATATS------------------------ 113
KP TPA + PS+ PA + PA+ T
Sbjct: 77 KKPVGATPAESTPQPSNLQIPAAAQVTTVTPASVTDNSPAAPQNSDGLTPEQEETAQAIV 136
Query: 114 ------DSMLKV----FF--ERVNPY-----------GGESEDP------------LAFL 138
D +++ FF +R Y GG E L FL
Sbjct: 137 AMGYSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDLGGHQESAEHEEGERGQGLGLDFL 196
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
R PQF+Q+R +VQ NP LLP ++QQI QSNPAL+E I +NQE FV +LN
Sbjct: 197 RQLPQFEQLRELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLN 246
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+DPLAFLRTQPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEPV
Sbjct: 231 QDPLAFLRTQPQFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPV 290
Query: 192 AG 193
Sbjct: 291 GA 292
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N WQQT + +D + VK LK+KI+++KG + +++QKLIYAGKIL+D+Q L+EYNIDE
Sbjct: 6 KNLWQQTFTVEIDATKTVKDLKDKIEAQKG--FPSQHQKLIYAGKILTDEQPLTEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KF+VVM+SKPK
Sbjct: 64 KKFVVVMVSKPK 75
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/61 (83%), Positives = 56/61 (91%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
DPLAFLR QP FQQMRTVVQQNPELL +VLQQIGQ+NPALL++IS+NQEAFVRMLNEP
Sbjct: 221 DPLAFLRNQPTFQQMRTVVQQNPELLNSVLQQIGQTNPALLQMISNNQEAFVRMLNEPNE 280
Query: 193 G 193
G
Sbjct: 281 G 281
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D + V+QLKEK+Q+EKGSEYLAE QKLIYAGKILSDD +S+ NID KF+VVM+SK
Sbjct: 16 EIDSDQTVRQLKEKLQAEKGSEYLAENQKLIYAGKILSDDTKISDCNIDSKKFVVVMVSK 75
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 107/228 (46%), Gaps = 67/228 (29%)
Query: 28 EVKQLKEKIQSEKGS-EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP-- 84
++ ++K KI EKG EY E QKLIY GK+L D Q + E ID SKF+V+M+++ KP
Sbjct: 33 KIGEVKAKIAEEKGEVEYPIECQKLIYNGKVLDDAQTVEEVMIDPSKFVVIMIARKKPVG 92
Query: 85 ------TPAPY----------------------------SGPSDPTQPAGQESEATRPAT 110
TP P SG SD P +E+ A
Sbjct: 93 ATPAESTPQPSNLQIPAAAQVTTVTPASVTDNSPAAPQNSGISDGLTPEQEETAQAIVAM 152
Query: 111 ATS-DSMLKV----FF--ERVNPY-----------GGESEDP------------LAFLRT 140
S D +++ FF +R Y GG E L FLR
Sbjct: 153 GYSRDKVIRALRASFFNGDRAVEYLCSGIPEEEDLGGHQESAEHEEGERGQGLGLDFLRQ 212
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
PQF+Q+R +VQ NP LLP ++QQI QSNPAL+E I +NQE FV +LN
Sbjct: 213 LPQFEQLRELVQSNPALLPQIIQQIAQSNPALMEAIQNNQEEFVNLLN 260
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 106 bits (265), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+DPLAFLRTQPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEP
Sbjct: 231 QDPLAFLRTQPQFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEPA 290
Query: 192 AG 193
+
Sbjct: 291 SA 292
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N WQQT + +D + VK LK+KI+++KG + +++QKLIYAGKIL+D+Q L+EYNIDE
Sbjct: 6 KNLWQQTFTVEIDATKTVKDLKDKIEAQKG--FPSQHQKLIYAGKILTDEQPLTEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KF+VVM+SKPK
Sbjct: 64 KKFVVVMVSKPK 75
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 50/63 (79%), Positives = 55/63 (87%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GG EDPLAFLR QPQFQQMR V+QQNP+LL VLQQ+GQ+NP LL+LIS NQEAFVRML
Sbjct: 259 GGNPEDPLAFLRFQPQFQQMRQVIQQNPQLLNAVLQQLGQTNPQLLQLISRNQEAFVRML 318
Query: 188 NEP 190
NEP
Sbjct: 319 NEP 321
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 68/117 (58%), Gaps = 21/117 (17%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
QQT +D E VK KE+I+ +KG +Y A QKLIYAGKILSDD +SEY IDE KF+
Sbjct: 10 QQTFKIEVDPSETVKVFKERIEEKKGKDYPAHCQKLIYAGKILSDDSKMSEYEIDEKKFV 69
Query: 76 VVMLSKPKP-------TPAPYS----------GPSDPTQPAGQESEATRPATATSDS 115
V+M++KPK TP P + P+ TQPA +EA +PA S +
Sbjct: 70 VIMVTKPKQSVDATAVTPGPGATSTVASAGTPSPAAGTQPA---AEAQKPAETPSGT 123
>gi|312382824|gb|EFR28136.1| hypothetical protein AND_04281 [Anopheles darlingi]
Length = 273
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 104/198 (52%), Gaps = 19/198 (9%)
Query: 11 ITQNQWQQTVSHLDVQEE---VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
IT +Q H++V E V+ LKEKI SE G Y E Q LIY GK++ D LS+Y
Sbjct: 3 ITLKTLKQQTFHVEVDVEKDTVRMLKEKIFSESGQAYPVERQWLIYLGKVMEDSHPLSQY 62
Query: 68 NIDESKFI--------VVML---SKPKPTPAPY--SGPSDPTQPAGQESEATRPATAT-- 112
N+D+ KF+ +V L S + Y +D ++ A PA +
Sbjct: 63 NLDDKKFVMGYPEVSVIVALEICSNNREAAVEYLMDNAADMAVDLLEQQSAETPAASVPG 122
Query: 113 -SDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPA 171
S L+ V G +E PLAFLR P F +M+ ++Q++P LLP ++Q+I SNP
Sbjct: 123 IGVSGLQAPDMAVAAGGARNERPLAFLRGNPVFFEMKRLLQEDPSLLPYLMQRIQYSNPN 182
Query: 172 LLELISHNQEAFVRMLNE 189
L+ +IS NQE F+ M+NE
Sbjct: 183 LMRIISENQEEFLAMINE 200
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 56/65 (86%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G EDPLAFLR+QPQFQQMR V+Q NP+LL VLQQIGQ+NPALL++IS NQ+AFVRMLN
Sbjct: 203 GNEEDPLAFLRSQPQFQQMRQVIQANPQLLNAVLQQIGQTNPALLQIISQNQDAFVRMLN 262
Query: 189 EPVAG 193
EP G
Sbjct: 263 EPGTG 267
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +DV VK LKEKI++EKG +Y A Q+LIYAGKIL+D+ LSEY IDE
Sbjct: 6 KNLQQQTFTIDIDVNVTVKVLKEKIEAEKGKDYPAVNQRLIYAGKILTDETPLSEYKIDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAG 100
KFIVVM++KPK PA ++G SD T G
Sbjct: 66 KKFIVVMVTKPKLPPATHAGSSDSTPTPG 94
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/59 (84%), Positives = 55/59 (93%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+DPLAFLRTQPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEP
Sbjct: 231 QDPLAFLRTQPQFQQMRQVIQQNPQLLNPVLQQIGQTNPALLQLISQNQEAFVRMLNEP 289
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 59/72 (81%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N WQQT + +D + VK LK+KI+++KG + +++QKLIYAGKIL+D+Q L+EYNIDE
Sbjct: 6 KNLWQQTFTVEIDATKTVKDLKDKIEAQKG--FPSQHQKLIYAGKILTDEQPLTEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KF+VVM+SKPK
Sbjct: 64 KKFVVVMVSKPK 75
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 56/62 (90%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+S+DPLAFLR QPQFQQMR V+QQNP+LL +LQQIG +NPALL+LIS NQEAFVRMLNE
Sbjct: 207 QSQDPLAFLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNE 266
Query: 190 PV 191
PV
Sbjct: 267 PV 268
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 59/80 (73%), Gaps = 3/80 (3%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG AE QKLIYAGKIL+D+Q L+EYNIDE
Sbjct: 6 KNLQQQTFTIEIDSSQTVKDLKQKIETQKG--LPAEQQKLIYAGKILADEQPLTEYNIDE 63
Query: 72 SKFIVVMLSKPKPTPAPYSG 91
KFIVVM++KPK + P +
Sbjct: 64 KKFIVVMVTKPKTSATPKTS 83
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 56/62 (90%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+S+DPLAFLR QPQFQQMR V+QQNP+LL +LQQIG +NPALL+LIS NQEAFVRMLNE
Sbjct: 220 QSQDPLAFLRLQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNE 279
Query: 190 PV 191
PV
Sbjct: 280 PV 281
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Query: 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQAL 64
H I ++ QT + +D + VK LKEKI+ +KG + AE+QKLIYAGKIL+D+Q L
Sbjct: 14 HRFILIVEDYAGQTFTIEIDSSQTVKDLKEKIEMQKG--FPAEHQKLIYAGKILADEQPL 71
Query: 65 SEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKV 119
+EYNIDE KFIVVM++KPK P + + ++ E+T AT S L +
Sbjct: 72 TEYNIDEKKFIVVMVTKPKAGATPKTSEEQRAE-GDKKEESTSSATTQPSSNLNI 125
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 56/62 (90%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+S+DPLAFLR QPQFQQMR V+QQNP+LL +LQQIG +NPALL+LIS NQEAFVRMLNE
Sbjct: 206 QSQDPLAFLRMQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQEAFVRMLNE 265
Query: 190 PV 191
PV
Sbjct: 266 PV 267
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LKEKI+++KG + AE+QKLIYAGKIL+D+Q L+EYNIDE
Sbjct: 6 KNLQQQTFTIEIDSSQTVKDLKEKIETQKG--FPAEHQKLIYAGKILADEQPLTEYNIDE 63
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPAT 110
KFIVVM++KPK P + + + E+T AT
Sbjct: 64 KKFIVVMVTKPKAGATPKTSEEQRAESTDNKEESTSSAT 102
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 57/64 (89%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
++ DPLAFLR+QPQFQQM+ VVQQNP+LL VLQQ+GQ+NPALL LIS NQE+FVR+LNE
Sbjct: 194 DASDPLAFLRSQPQFQQMKQVVQQNPQLLNAVLQQLGQTNPALLNLISQNQESFVRLLNE 253
Query: 190 PVAG 193
P AG
Sbjct: 254 PSAG 257
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 61/89 (68%), Gaps = 3/89 (3%)
Query: 12 TQNQWQQT-VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
+N +Q+ + H++ + VK LK++I++EKG +Y +YQ+LIY GKIL D+ LSEYNID
Sbjct: 5 VRNLYQKNFIIHIEPSKTVKDLKQQIEAEKGKDYRWDYQRLIYRGKILKDEAPLSEYNID 64
Query: 71 ESKFIVVMLSKPKP--TPAPYSGPSDPTQ 97
E KFIV+M+SKP T SG + TQ
Sbjct: 65 EDKFIVIMVSKPDSGTTEVANSGDNSATQ 93
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/61 (81%), Positives = 54/61 (88%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G +EDPLAFLR QPQFQQMR V+QQNP+LL VLQQIGQSNP LL+LIS NQEAFVRMLN
Sbjct: 254 GGAEDPLAFLRFQPQFQQMRQVIQQNPQLLNAVLQQIGQSNPQLLQLISQNQEAFVRMLN 313
Query: 189 E 189
E
Sbjct: 314 E 314
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q Q +D + VK KEKI+ EKG EY A+YQKLIYAGKIL+DD +SEY+I+E KF
Sbjct: 9 QQQSFKVEIDPSDTVKVFKEKIEVEKGKEYPAQYQKLIYAGKILNDDSKMSEYDIEEKKF 68
Query: 75 IVVMLSKPKP-TPAPYSGPSDPT 96
+V+M++KPK TP+ G + P
Sbjct: 69 VVIMVTKPKCGTPSSGEGAASPV 91
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/58 (84%), Positives = 53/58 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEPV
Sbjct: 213 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPV 270
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + V+ LK+KI+++KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVRDLKQKIETQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KFIVVM++K K
Sbjct: 64 KKFIVVMVTKLK 75
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/58 (84%), Positives = 53/58 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEPV
Sbjct: 213 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPV 270
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + V+ LK+KI+ +KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVRDLKQKIEIQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KFIVVM++K K
Sbjct: 64 KKFIVVMVTKLK 75
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/58 (84%), Positives = 53/58 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEPV
Sbjct: 213 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPV 270
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVKDLKQKIETQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KFIVVM++K K
Sbjct: 64 KKFIVVMVTKLK 75
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/58 (84%), Positives = 53/58 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEPV
Sbjct: 214 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEPV 271
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVKDLKQKIETQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KFIVVM++K K
Sbjct: 64 KKFIVVMVTKLK 75
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/66 (74%), Positives = 53/66 (80%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GG E PLAFLR Q QFQQMR V+QQNPE+L VLQQIGQ+NPALL+LIS NQEAFV ML
Sbjct: 244 GGNDESPLAFLRRQAQFQQMRNVIQQNPEMLNAVLQQIGQANPALLQLISENQEAFVNML 303
Query: 188 NEPVAG 193
NE G
Sbjct: 304 NESEDG 309
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT+ D + V++LKEKI+SE G EY A QKLIYAG IL DD+ + Y +DE
Sbjct: 6 KNLQQQTIKLEFDESQTVQKLKEKIESELGKEYPASQQKLIYAGCILDDDKTIESYKVDE 65
Query: 72 SKFIVVM 78
KFIVVM
Sbjct: 66 KKFIVVM 72
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 53/58 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PLAFLR QPQFQQMR V+QQNP+LL +LQQIGQ+NPALL+LIS NQEAFVRMLNEPV
Sbjct: 213 PLAFLRMQPQFQQMREVIQQNPQLLNAMLQQIGQTNPALLQLISQNQEAFVRMLNEPV 270
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG + AE+QKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVKDLKQKIETQKG--FPAEHQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEAT 106
KFIVVM++K K + D T +E +T
Sbjct: 64 KKFIVVMVTKLKTGNGHTAAEEDHTNTETKEESST 98
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEP
Sbjct: 213 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP 269
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 72/128 (56%), Gaps = 33/128 (25%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVKDLKQKIETQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK-----------------------------PTPAP-YSGPSDPTQPAGQ 101
KFIVVM++K K P+ P G S+PT A +
Sbjct: 64 KKFIVVMVTKLKTGNGHTTEEEHTTNTDNKEESSTTSSVAQPSSNPTVQGASNPTNTAQE 123
Query: 102 ESEATRPA 109
+SEA+ A
Sbjct: 124 QSEASTTA 131
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEP
Sbjct: 213 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP 269
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVKDLKQKIETQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KFIVVM++K K
Sbjct: 64 KKFIVVMVTKLK 75
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/57 (84%), Positives = 52/57 (91%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PLAFLR QPQFQQMR V+QQNP+LL VLQQIGQ+NPALL+LIS NQEAFVRMLNEP
Sbjct: 213 PLAFLRMQPQFQQMRQVIQQNPQLLNAVLQQIGQTNPALLQLISQNQEAFVRMLNEP 269
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%), Gaps = 3/72 (4%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LK+KI+++KG + A+YQKLIYAGKIL+DD L+EYNIDE
Sbjct: 6 KNLQQQTFTVEIDPSQTVKDLKQKIETQKG--FPAKYQKLIYAGKILTDDHPLAEYNIDE 63
Query: 72 SKFIVVMLSKPK 83
KFIVVM++K K
Sbjct: 64 KKFIVVMVTKLK 75
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 53/59 (89%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DPLAFLR QPQFQQMR V+QQNP LL TVLQQIGQ+NPALL+ IS +Q+AFVRMLNEPV
Sbjct: 122 DPLAFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPV 180
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 58/68 (85%), Gaps = 1/68 (1%)
Query: 125 NPYGGESE-DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
+P GG+SE DPLAFLR QPQFQQMR ++QQNP LLP +LQQ+GQSNP LL+LI+ +QE F
Sbjct: 257 SPLGGQSEEDPLAFLREQPQFQQMRQIIQQNPSLLPALLQQLGQSNPQLLQLINQHQEQF 316
Query: 184 VRMLNEPV 191
++MLN PV
Sbjct: 317 IQMLNNPV 324
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 8/97 (8%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ ++++ + VK LK K++ +G + + A QKLIYAG+IL+DD+ +S+Y
Sbjct: 3 ITLKTLQQQTFKVEIEPTKTVKDLKAKVEEVRGKDGFPAAGQKLIYAGRILADDKLISDY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSG-----PSDPTQPA 99
N+ E F+VVM++KPK P S + P+QPA
Sbjct: 63 NMSEENFVVVMVTKPKAAPKTESTVESKPATAPSQPA 99
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+S+DPLAFLR QPQFQQMR V+QQNP+LL +LQQIG +NPALL+LIS NQE FVRMLNE
Sbjct: 205 QSQDPLAFLRLQPQFQQMRQVIQQNPQLLNNLLQQIGSTNPALLQLISQNQETFVRMLNE 264
Query: 190 PV 191
P
Sbjct: 265 PA 266
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 4/104 (3%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +D + VK LKEKI+++KG + AE+QKLIYAGKIL+D+Q L+EYNIDE
Sbjct: 6 KNLQQQTFTIEIDSLQTVKDLKEKIETQKG--FPAEHQKLIYAGKILADEQPLAEYNIDE 63
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
KFIVVM++KPK P + T+ ++ E+T AT S
Sbjct: 64 KKFIVVMVTKPKTGATPKTSEEQRTE-GDKKEESTSSATTQPSS 106
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 53/59 (89%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DPL+FLR QPQFQQMR V+QQNP LL TVLQQIGQ+NPALL+ IS +Q+AFVRMLNEPV
Sbjct: 194 DPLSFLRDQPQFQQMRAVIQQNPSLLNTVLQQIGQTNPALLQAISQHQQAFVRMLNEPV 252
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D +E VK LK KI+ EKG +Y A+YQ+LIYAGKIL DD +S YNIDE KFIV+M++K
Sbjct: 16 EIDPEETVKALKLKIEVEKGKDYAADYQRLIYAGKILLDDNKISTYNIDEKKFIVIMVTK 75
Query: 82 PKPTPAPYSGPSDPTQPAGQESEAT 106
PKP+ S S P AG+ + +T
Sbjct: 76 PKPSETQASSTSTPE--AGECAAST 98
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
EDPLAFLR+QPQF QMR VVQQNP LL +LQQIGQ+NPALL++IS NQ AF RML EP
Sbjct: 228 GEDPLAFLRSQPQFAQMRQVVQQNPSLLNAILQQIGQTNPALLQMISQNQAAFFRMLTEP 287
Query: 191 VAGDRRNKNV 200
+G + +V
Sbjct: 288 SSGTAGSASV 297
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D VK LKEKI+ EKG +Y A QKLIYAGKIL D LSE+ IDE KFIV+M++K
Sbjct: 16 EIDPSSTVKTLKEKIEKEKGVDYPAVGQKLIYAGKILDDVSVLSEHGIDEKKFIVIMVTK 75
Query: 82 PKPT 85
PK +
Sbjct: 76 PKAS 79
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 56/69 (81%)
Query: 126 PYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
P G + DP FLR+QPQF QMR+++ QNP+LL VLQQIGQ+NPALL+LIS NQ+AF+
Sbjct: 236 PSGRSTADPFEFLRSQPQFLQMRSLIYQNPQLLDAVLQQIGQTNPALLQLISENQDAFLN 295
Query: 186 MLNEPVAGD 194
MLN+P+ G+
Sbjct: 296 MLNQPLEGE 304
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + D ++ V +LK+KI E+G+EYL E QKLIYAG IL DD+ +S Y +DE
Sbjct: 6 KNLQQQTFTIDFDPEKTVLELKKKIFEERGAEYLPEKQKLIYAGVILVDDRKISSYKVDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 95.9 bits (237), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 56/71 (78%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
+S DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN
Sbjct: 247 AQSSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLN 306
Query: 189 EPVAGDRRNKN 199
+P+ G+ + N
Sbjct: 307 QPIEGESASGN 317
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + D ++ V +LK+KI E+G EY+AE QKLIYAG IL DD+ ++ Y IDE
Sbjct: 6 KNLQQQTFTIEFDPEKTVLELKKKIFDERGVEYVAEKQKLIYAGVILMDDRTIASYKIDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 56/71 (78%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
+S DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN
Sbjct: 247 AQSSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLN 306
Query: 189 EPVAGDRRNKN 199
+P+ G+ + N
Sbjct: 307 QPIEGESASGN 317
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + D ++ V +LK+KI E+G EY+AE QKLIYAG IL DD+ ++ Y IDE
Sbjct: 6 KNLQQQTFTIEFDPEKTVLELKKKIFDERGVEYVAEKQKLIYAGVILMDDRTIASYKIDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
S DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P
Sbjct: 278 SADPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQP 337
Query: 191 VAGDRRNKN 199
+ G+ N
Sbjct: 338 LEGEVGGDN 346
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT S D ++ V LK+ I +E+G+EYL E QKLIYAG IL+D++ +S Y +DE
Sbjct: 6 KNLQQQTFSIDFDPEKTVLDLKKTIFNERGAEYLVEKQKLIYAGVILTDERTISSYKVDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 51/62 (82%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 239 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPIE 298
Query: 193 GD 194
D
Sbjct: 299 ND 300
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + + ++ V +LK+KI +GSEY+ E QKLIYAG IL DD +S YN+DE
Sbjct: 6 KNLQQQTFTIEFEAEKTVFELKKKIFDVRGSEYIVEKQKLIYAGVILVDDHTISSYNVDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 239 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPI 297
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+GSEY+AE QKLIYAG IL+DD+ + YN+DE
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFDERGSEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 239 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPI 297
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 15/135 (11%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+G EY+AE QKLIYAG IL+DD+ + YN+DE
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVN----PY 127
KFIVVML++ S S+ Q + +ES T+T DS + E N P
Sbjct: 66 KKFIVVMLTRD-------SSSSNRNQLSVKESNKL---TSTDDSKQSMPCEEANHTNSPS 115
Query: 128 GGESEDPLAFLRTQP 142
+ED + T+P
Sbjct: 116 STNTEDSVLSRETRP 130
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 239 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPI 297
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 15/135 (11%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+G EY+AE QKLIYAG IL+DD+ + YN+DE
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVN----PY 127
KFIVVML++ S S+ Q + +ES T+T DS + E N P
Sbjct: 66 KKFIVVMLTRD-------SSSSNRNQLSVKESNKL---TSTDDSKQSMPCEEANHTNSPS 115
Query: 128 GGESEDPLAFLRTQP 142
+ED + T+P
Sbjct: 116 STNTEDSVLSRETRP 130
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 236 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPI 294
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+G EY+AE QKLIYAG IL+DD+ + YN+DE
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFDERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSM 116
KFIVVML++ S S+P Q +ES+ DSM
Sbjct: 66 KKFIVVMLTRD-------SSSSNPNQLGVKESDKLTSTDNLKDSM 103
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 168 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPI 226
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 270 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPL 328
Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 51/70 (72%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + D ++ V +LK +I +E+G+EY E QKLIYAG IL+DD+ ++ Y +DE
Sbjct: 6 KNLQQQTFTIDFDPEKTVLELKRQIFNERGAEYFVEKQKLIYAGVILTDDRTINSYKVDE 65
Query: 72 SKFIVVMLSK 81
KFIVVML++
Sbjct: 66 KKFIVVMLTR 75
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 49/59 (83%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 239 DPFEFLRRQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPI 297
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 65/105 (61%), Gaps = 8/105 (7%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+G EY+AE QKLIYAG IL+DD+ + YN+D+
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFDERGPEYVAEKQKLIYAGVILTDDRTVDSYNVDD 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSM 116
KFIVVML++ S S+P Q + +ES+ + DSM
Sbjct: 66 KKFIVVMLTRD-------SSSSNPNQLSVKESDKLISTDDSKDSM 103
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+
Sbjct: 262 DPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLISENQDAFLNMLNQPL 320
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + D ++ V +LK +I E+G+EYL E QKLIYAG IL+D++ +S Y +DE
Sbjct: 6 KNLQQQTFAIDFDPEKTVLELKNQIFYERGAEYLVEKQKLIYAGVILTDERTISSYKVDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQ 101
KFIVVMLS+ SG S T GQ
Sbjct: 66 KKFIVVMLSR------DISGTSSNTNADGQ 89
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 57/91 (62%), Gaps = 16/91 (17%)
Query: 106 TRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQI 165
T P TATS GG PL FLR QPQFQQMR ++QQNP LLP +LQQI
Sbjct: 255 TIPTTATS-------------LGGH---PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQI 298
Query: 166 GQSNPALLELISHNQEAFVRMLNEPVAGDRR 196
G+ NP LL+ IS +QE F+ MLNEPV R+
Sbjct: 299 GRENPQLLQQISQHQEHFIHMLNEPVIESRQ 329
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+SE+G + + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
E E+PL FLR+QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLN
Sbjct: 223 EGENPLEFLRSQPQFQSMRQVIQQNPSLLPALLQQLGQENPELLQQISQHQELFIQMLNA 282
Query: 190 PV 191
PV
Sbjct: 283 PV 284
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 4/87 (4%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI++EKG + + QKLIYAGKIL DD + EY
Sbjct: 3 ITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIKEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSD 94
IDE F+VVM+SK K +P + PS+
Sbjct: 63 KIDEKNFVVVMVSKTK-SPGTSAAPSE 88
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Query: 122 ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQE 181
E+ P GGE +PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE
Sbjct: 224 EQPAPEGGE--NPLEFLRDQPQFQNMRQVIQQNPSLLPALLQQLGQENPQLLQQISRHQE 281
Query: 182 AFVRMLNEPVA 192
F++MLNEP
Sbjct: 282 QFIQMLNEPTG 292
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 3/85 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPGETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPA 99
+VVM++K K PA S P +P+ PA
Sbjct: 72 VVVMVTKAKAGPA-TSVPPEPSAPA 95
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 49/63 (77%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F+ MLNEPV
Sbjct: 264 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVLE 323
Query: 194 DRR 196
R+
Sbjct: 324 SRQ 326
Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+SE+G + + QKLIYAGKIL+D+ AL EY
Sbjct: 3 ITLKTLQQQTFRIDIDPEETVKALKEKIESERGKDAFPVAGQKLIYAGKILNDETALKEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAG 100
IDE F+VVM++KPK A + PS+ T G
Sbjct: 63 KIDEKNFVVVMVTKPK-AAAGVTQPSNATSTVG 94
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 269 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 326
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 3/77 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
++ VS + EVK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+
Sbjct: 5 KKKVSGSVCRREVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV 64
Query: 76 VVMLSKPKP--TPAPYS 90
VVM++KPK TPAP +
Sbjct: 65 VVMVTKPKAVSTPAPAT 81
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 53/71 (74%), Gaps = 3/71 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++K
Sbjct: 17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76
Query: 82 PKP--TPAPYS 90
PK TPAP +
Sbjct: 77 PKAVSTPAPAT 87
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
NP G PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F+
Sbjct: 247 NPGG----HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFI 302
Query: 185 RMLNEPV 191
+MLNEPV
Sbjct: 303 QMLNEPV 309
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 86 PAPYS 90
PAP +
Sbjct: 61 PAPAT 65
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 276 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 333
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 91 GPSDPTQPAGQESEATRPATATSDSMLK-VFFERVNPYGGESEDPLAFLRTQPQFQQMRT 149
G D P+G + A+ PA A S + P +PL FLR QPQF QMR
Sbjct: 208 GAVDAVSPSG-STPASAPAPAISTGLSSPSSTAPAQPSSASGANPLEFLRNQPQFLQMRQ 266
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 267 IIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPV 308
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI++EKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 4/67 (5%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
NP G PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F+
Sbjct: 269 NPGG----HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFI 324
Query: 185 RMLNEPV 191
+MLNEPV
Sbjct: 325 QMLNEPV 331
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F+ MLNEP
Sbjct: 242 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPAVE 301
Query: 194 DRR 196
R+
Sbjct: 302 SRQ 304
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
VK LKEKI+SE+G + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 56
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 253 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 310
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 86 PAPYS 90
PAP +
Sbjct: 61 PAPAT 65
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 254 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 311
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 272 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 329
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 11 ITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNI 69
+T QQ + +DV + VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY I
Sbjct: 3 VTLKTLQQQIFKIDV-DLVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKI 61
Query: 70 DESKFIVVMLSKPKP--TPAP 88
DE F+VVM++KPK TPAP
Sbjct: 62 DEKNFVVVMVTKPKAVTTPAP 82
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 254 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 311
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 253 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 310
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 60
Query: 86 PAPYS 90
PAP +
Sbjct: 61 PAPAT 65
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 91 GPSDPTQPAGQESEATRPATATSDSMLK-VFFERVNPYGGESEDPLAFLRTQPQFQQMRT 149
G D P+G + A+ PA A S + P +PL FLR QPQF QMR
Sbjct: 210 GAVDAVSPSG-STPASAPAPAISTGLSSPSSTAPAQPSSASGANPLEFLRNQPQFLQMRQ 268
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 269 IIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPV 310
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI++EKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 349 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 406
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 48/65 (73%), Gaps = 5/65 (7%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--- 84
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK
Sbjct: 94 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAAAT 153
Query: 85 -TPAP 88
TP+P
Sbjct: 154 STPSP 158
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 254 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 311
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 254 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 311
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 253 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 310
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 48/63 (76%), Gaps = 3/63 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 86 PAP 88
PAP
Sbjct: 62 PAP 64
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 274 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
I+E F+VVM++KPK TPAP +
Sbjct: 63 KIEEKNFVVVMVTKPKAVSTPAPAT 87
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++K
Sbjct: 17 IDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76
Query: 82 PKP--TPAPYS 90
PK TPAP +
Sbjct: 77 PKAVSTPAPAT 87
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 252 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 309
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 48/63 (76%), Gaps = 3/63 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
V+ LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 1 VRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 60
Query: 86 PAP 88
PAP
Sbjct: 61 PAP 63
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 274 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 57/83 (68%), Gaps = 5/83 (6%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAP 88
IDE F+VVM++KPK TPAP
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAP 85
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 274 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E V+ LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 254 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 311
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 479 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 536
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 227 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 286
Query: 86 PAPYS 90
PAP +
Sbjct: 287 PAPAT 291
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 254 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 311
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVST 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 253 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 310
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 251 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 308
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 2 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 61
Query: 86 PAPYS 90
PAP +
Sbjct: 62 PAPAT 66
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 273 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 330
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP-TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTPAPAT 86
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 280 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 337
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVGGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVML 79
IDE F+VVM+
Sbjct: 63 KIDEKNFVVVMV 74
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 260
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 274 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 276 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 333
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ E VK LKEKI+ EKG + + QKLIYAGKIL+DD AL+EY
Sbjct: 3 ITLKTLQQQTFKIDIDCGETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALNEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 272 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 329
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 61/94 (64%), Gaps = 7/94 (7%)
Query: 108 PATATSDSMLKVFFERVNPY-------GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPT 160
PA +T + FE+ + G EDPL FLR PQFQQ+R +VQQNP++L
Sbjct: 217 PANSTQPAAPGNLFEQAAAHAQGEEESGASGEDPLGFLRELPQFQQLRQIVQQNPQMLEG 276
Query: 161 VLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
+LQQIG+SNPAL ++IS N EAF+++L E V G+
Sbjct: 277 ILQQIGESNPALAQIISQNPEAFLQLLAEGVDGE 310
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q + V +D + V ++K+KI+ ++G Y E QKLIY+G+IL+DD+ + EY+I E F
Sbjct: 10 QQKFVVPDVDPKTTVLEVKQKIKEQQG--YEVERQKLIYSGRILADDKTVEEYDIKEKDF 67
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
IV M+S+ PA T+ Q + + P TS S
Sbjct: 68 IVCMVSR---APASKVKTEQKTEEKKQSTTESTPLNTTSTS 105
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 278 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 335
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 260
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 278 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 335
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 1/56 (1%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK
Sbjct: 1 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 56
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 354 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 411
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 57/100 (57%), Gaps = 9/100 (9%)
Query: 28 EVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY IDE F+VVM++KPK
Sbjct: 101 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 160
Query: 87 APYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNP 126
P PA + T TA S S V + P
Sbjct: 161 TPV--------PATTQQSNTPATTAVSSSTATVVAQAPTP 192
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 274 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Query: 94 DPTQPAGQESEATRPATATSDSM--LKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVV 151
D Q AG +EAT A + + L+ + G E +PL+FLR QPQFQQMR ++
Sbjct: 205 DQGQAAGTTAEATSAGVAPAAPLGGLRAPTGTGSSTGAERVNPLSFLRNQPQFQQMRQLI 264
Query: 152 QQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
QQN LLP +LQ+IG+ NP LL+ IS +QE F++MLNEP
Sbjct: 265 QQNASLLPALLQEIGRENPELLQEISRHQEQFIQMLNEP 303
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +++ EE VK LKE+I++EKG + + KLIYAG IL+D + L EY
Sbjct: 3 ITLKTLQQQTFKIEIDEEETVKTLKERIEAEKGKDNFPVSGLKLIYAGVILNDVKPLKEY 62
Query: 68 NIDESKFIVVMLSKPKPTPA------PYSGPSDPTQPA 99
NI + F+VVM +KPK PA SGP PA
Sbjct: 63 NISDKNFVVVMATKPKTAPAATQPSPAASGPCTAAPPA 100
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 202 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 259
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 55/72 (76%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VK LKEKI++EKG +Y A Q+LIYAGKIL+D+ LSEY IDE KFIVVM++KPK PA
Sbjct: 1 VKVLKEKIEAEKGKDYPAVNQRLIYAGKILTDETPLSEYKIDEKKFIVVMVTKPKLPPAT 60
Query: 89 YSGPSDPTQPAG 100
++G SD T G
Sbjct: 61 HAGSSDSTPTPG 72
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 305 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 362
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP--T 85
VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 54 VKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVTT 113
Query: 86 PAPYS 90
PAP +
Sbjct: 114 PAPAT 118
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 260
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 260
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 203 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 260
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 202 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 259
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 243 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 300
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 193 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 250
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 112 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 169
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 83 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 140
>gi|345327424|ref|XP_003431168.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 182
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 49 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 106
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 85 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 142
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+PL FL+ QPQFQQMR ++QQNP LLP +LQQIG+ NP+LL+ IS +QE F++MLN+PV
Sbjct: 277 NPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPV 335
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/86 (53%), Positives = 57/86 (66%), Gaps = 4/86 (4%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+ EKG++ + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDAEETVKALKEKIELEKGNDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPS 93
IDE F+VVM++KPK P S PS
Sbjct: 63 KIDEKNFVVVMVTKPKGAACP-SAPS 87
>gi|159162855|pdb|1PVE|A Chain A, Solution Structure Of Xpc Binding Domain Of Hhr23b
Length = 72
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
S PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEP
Sbjct: 2 SHMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEP 61
Query: 191 V 191
V
Sbjct: 62 V 62
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+PL FL+ QPQFQQMR ++QQNP LLP +LQQIG+ NP+LL+ IS +QE F++MLN+PV
Sbjct: 277 NPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPV 335
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+ EKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDGEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|93279429|pdb|2F4M|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
gi|93279431|pdb|2F4O|B Chain B, The Mouse Pngase-Hr23 Complex Reveals A Complete
Remodulation Of The Protein-Protein Interface Compared
To Its Yeast Orthologs
Length = 61
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVG 61
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 50/59 (84%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+PL FL+ QPQFQQMR ++QQNP LLP +LQQIG+ NP+LL+ IS +QE F++MLN+PV
Sbjct: 287 NPLDFLQNQPQFQQMRQIIQQNPSLLPALLQQIGRENPSLLQQISQHQEQFIQMLNDPV 345
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+ EKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDAEETVKALKEKIELEKGKDAFPVAGQKLIYAGKILNDDIALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 53/228 (23%)
Query: 17 QQTVSHLDVQEE---VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESK 73
Q+T+S L++Q++ V QLK+++ E +LIY G+I+ DD L++YNI E +
Sbjct: 10 QKTIS-LELQDDKQKVIQLKQRLVQLPEITQPVESLQLIYGGRIMQDDLPLADYNIKEDR 68
Query: 74 FIVVMLSK------PKPTPAPYSGPSDPTQPA--------------------GQESEATR 107
FIV+M + P+ P P QPA G E + R
Sbjct: 69 FIVLMTKRSANVQEPESEPRQEHHPEQIVQPAEPPRPSVTPDEQRVRDLMLMGYEEQDVR 128
Query: 108 PATATSDSMLKVFFE---------RVNPYGG--------------ESEDPLAFLRTQPQF 144
A + S + + E V G E+ + L +L T P+F
Sbjct: 129 AALSASFNHPERAIEYLITGIPSSHVTAMNGTTTTSSPAESSVISETAEHLNYLATDPRF 188
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
+R +++QNPELL VL + +S+PA E I NQE F+ MLNEP A
Sbjct: 189 AHVRDLIRQNPELLELVLTHLRESDPAAFEAIRSNQEEFISMLNEPTA 236
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
E E+PLAFLR QPQF MR +QQNP LL +LQQ+GQ NP LL+ I+ +QE F++MLNE
Sbjct: 238 EGENPLAFLRNQPQFLHMRQAIQQNPNLLSALLQQLGQENPQLLQQINQHQERFIQMLNE 297
Query: 190 PV 191
PV
Sbjct: 298 PV 299
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT+ +D ++ VK LKEKI++E+G + + QKLIYAGKIL DD + +Y IDE F
Sbjct: 10 QQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSCQKLIYAGKILQDDTPIKDYKIDEKNF 69
Query: 75 IVVMLSKPKPTPA 87
+VVM+SK KP+ A
Sbjct: 70 VVVMVSKAKPSTA 82
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 17/104 (16%)
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQM 147
P SG P PAG A+ PA R +P G +PL+FLR QPQFQ M
Sbjct: 215 PASG--TPAVPAGN---ASAPANT-----------RSSPSAGGG-NPLSFLRNQPQFQVM 257
Query: 148 RTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
R ++QQN LLP +LQ+IG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 258 RQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFIQMLNEPV 301
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 11/114 (9%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ EE V+ LKE+I+ EKG E + QKLIYAGKILSDD L EY
Sbjct: 3 ITLKTLQQQTFKIDIDEEETVRTLKERIEQEKGKEIFSVAGQKLIYAGKILSDDSPLKEY 62
Query: 68 NIDESKFIVVMLSKPKPTP--------APYSGPSDPTQPAGQESEATRPATATS 113
IDE F+VVM++KPK P AP + P + S + +PA +S
Sbjct: 63 KIDEKNFVVVMVTKPKKAPTASQPSTAAPAPSTTAPAAQSDSSSTSDKPAEQSS 116
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLRTQPQF MR +VQQNP +LP +LQ +GQSNP+LL+LIS +Q+ F+RMLNEP G
Sbjct: 230 LEFLRTQPQFITMRRMVQQNPGVLPQLLQSMGQSNPSLLQLISSHQDEFIRMLNEPDDG 288
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +++ E+ V +LK+KI+++KG + Y KLIYAGKIL+DD L EY
Sbjct: 3 ITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEY 62
Query: 68 NIDESKFIVVM 78
NIDE F+V+M
Sbjct: 63 NIDEKSFVVIM 73
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 98/227 (43%), Gaps = 44/227 (19%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
T +Q T D E+V QLK+++ + E +LIY G+I+ DD L +YNI E
Sbjct: 7 TLDQKTITFELNDASEKVLQLKQRLVALPEISQPVENLQLIYGGRIMQDDHKLIDYNIME 66
Query: 72 SKFIVVMLSK-------------------------PKPTPAPYSGPSDPTQPAGQESEAT 106
K IV+M K P+P+ P G E +
Sbjct: 67 DKIIVLMTKKVQEKEQNKQQQQQQPAPPTPTPAEVPRPSLTPDEQRVRDLILMGYEEQDV 126
Query: 107 RPATATSDSMLKVFFERV---------------NPYGG----ESEDPLAFLRTQPQFQQM 147
R A S + + E + + G E+ + L +L T P+F +
Sbjct: 127 RAALRASFNHPERAIEYLITGIPNQADQQQTTAGSHDGAEVSEAAERLNYLATDPRFAHV 186
Query: 148 RTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
R +V+QNPELL VL + +++PA I +NQE FV MLN+P A D
Sbjct: 187 RDLVRQNPELLELVLSHLRETDPAAFATIRNNQEEFVNMLNQPTAAD 233
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
E+PL FLR QPQF QMR ++QQNP LLP +L Q+G+ NP LL+ IS +Q F++MLNEP+
Sbjct: 251 ENPLEFLRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPI 310
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ H+ ++ E VK LKEKI++EKG + + QKLIYAGKIL D+ + EY
Sbjct: 3 ITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPIIEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDP 95
IDE KF+VVM++KPK +P+ + + P
Sbjct: 63 KIDEEKFVVVMITKPKSSPSVQAAATQP 90
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ H+ ++ E VK LKEKI++EKG + + QKLIYAGKIL D+ + EY
Sbjct: 3 ITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPIIEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
IDE KF+VVM++KPK +P+ + + P P+ + +T P + S
Sbjct: 63 KIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASS 110
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
E+PL FLR QPQF QMR ++QQNP LLP +L Q+G+ NP LL+ IS +Q F++MLNEP+
Sbjct: 251 ENPLEFLRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPI 310
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ H+ ++ E VK LKEKI++EKG + + QKLIYAGKIL D+ + EY
Sbjct: 3 ITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPIIEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
IDE KF+VVM++KPK +P+ + + P P+ + +T P + S
Sbjct: 63 KIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASS 110
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
E+PL FLR QPQF QMR ++QQNP LLP +L Q+G+ NP LL+ IS +Q F++MLNEP+
Sbjct: 251 ENPLEFLRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPI 310
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ H+ ++ E VK LKEKI++EKG + + QKLIYAGKIL D+ + EY
Sbjct: 3 ITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPIIEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
IDE KF+VVM++KPK +P+ + + P P+ + +T P + S
Sbjct: 63 KIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPASS 110
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
E+PL FLR QPQF QMR ++QQNP LLP +L Q+G+ NP LL+ IS +Q F++MLNEP+
Sbjct: 251 ENPLEFLRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPI 310
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 71/116 (61%), Gaps = 10/116 (8%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ H+ ++ E VK LKEKI++EKG + + QKLIYAGKIL D+ + EY
Sbjct: 3 ITVKTLQQQSFHIQIEPELPVKALKEKIETEKGKDAFPVAGQKLIYAGKILDDETPIIEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPA-------TATSDSM 116
IDE KF+VVM++KPK +P+ + + P P+ + +T P TAT++++
Sbjct: 63 KIDEEKFVVVMITKPKSSPSVQAAATQPATPSTPQPASTTPTVPPVSSPTATTETV 118
Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 47/60 (78%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
E+PL FLR QPQF QMR ++QQNP LLP +L Q+G+ NP LL+ IS +Q F++MLNEP+
Sbjct: 251 ENPLEFLRNQPQFHQMRQILQQNPSLLPALLHQLGRENPHLLQQISQHQGNFIQMLNEPI 310
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+PL FL QPQF QMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEP
Sbjct: 249 NPLGFLVNQPQFLQMRQIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEP 306
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI++EKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDAEETVKTLKEKIENEKGKDGFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVM 78
IDE F+VVM
Sbjct: 63 KIDEKNFVVVM 73
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 126 PYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
P +DPL FLR+ PQFQQ+R +VQQNP++L T+LQQIGQ +PAL + I+ N EAF++
Sbjct: 238 PSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQ 297
Query: 186 MLNEPVAGD 194
+L E G+
Sbjct: 298 LLAEGAEGE 306
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q + +S + ++ +LKEKIQ+++ Y E QKLIY+G+IL+DD+ + EYNI E F
Sbjct: 10 QQKFVISDVSADTKISELKEKIQTQQN--YEVERQKLIYSGRILADDKTVGEYNIKEQDF 67
Query: 75 IVVMLSKPK 83
IV M+S+PK
Sbjct: 68 IVCMVSRPK 76
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
SEDP+A L + PQFQQMR +VQ NPELLP ++QQIG N L LI N++AF+ LN P
Sbjct: 225 SEDPIAALASLPQFQQMRALVQANPELLPQLIQQIGNDNADLFRLIQENEQAFLEFLNTP 284
Query: 191 VAGDRR 196
V G R
Sbjct: 285 VTGTTR 290
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 11/103 (10%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T +Q LD+QE+ V +K+KI++E+GSE+ A QKLI++GK++ D ++L +Y
Sbjct: 3 VTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSEFDASTQKLIHSGKVMEDSKSLKDYK 62
Query: 69 IDESKFIVVM-LSKPKPTPAPYSGPSDPTQPAGQESEATRPAT 110
+ +S F+VVM +SK PA S P PAG+ RP T
Sbjct: 63 VTDSGFVVVMSVSK----PAKEGSASAPGNPAGE----GRPTT 97
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 41/53 (77%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F R
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFFRC 327
>gi|46015810|pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
SEDP+A L + PQFQQMR +VQ NPELLP ++QQIG N L LI N++AF+ +N P
Sbjct: 216 SEDPIAALASLPQFQQMRALVQANPELLPQLIQQIGNDNADLFRLIQENEQAFLEFINTP 275
Query: 191 VAGDRR 196
V G R
Sbjct: 276 VTGTTR 281
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM-L 79
LD QE+ + +K+KI+++ GSE+ A QKLI++GK++ D ++L +Y + ES F+VVM +
Sbjct: 15 LDFQEDDLIGDVKKKIEAKWGSEFDARTQKLIHSGKVMEDSKSLKDYKVTESGFVVVMSV 74
Query: 80 SKPKPTPAPYSGPSDPTQPAGQESEATRPAT 110
SKP + S + P G+ T+P T
Sbjct: 75 SKPSKDTTKEASASVQSNPTGE----TKPTT 101
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LL +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLL-ALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
SEDP+A L + PQFQQMR +VQ NPELLP ++QQIG N L LI N++AF+ +N P
Sbjct: 229 SEDPIAALASLPQFQQMRALVQANPELLPQLIQQIGNDNADLFRLIQENEQAFLEFINTP 288
Query: 191 VAGDRR 196
V G R
Sbjct: 289 VTGTTR 294
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 7/91 (7%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM-L 79
LD QE+ + +K+KI+++ GSE+ A QKLI++GK++ D ++L +Y + ES F+VVM +
Sbjct: 15 LDFQEDDLIGDVKKKIEAKWGSEFDARTQKLIHSGKVMEDSKSLKDYKVTESGFVVVMSV 74
Query: 80 SKPKPTPAPYSGPSDPTQPAGQESEATRPAT 110
SKP + S + P G+ T+P T
Sbjct: 75 SKPSKDTTKEASASVQSNPTGE----TKPTT 101
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 67/205 (32%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKP---------------KPTPAPYSGPSD 94
+LIY+G+I+ DD+ +SEYNI E +FIV+M K K + P SG ++
Sbjct: 45 QLIYSGRIMQDDRPISEYNIMEDRFIVLMTKKSVNAVEPPKKNTEAEQKESQQPKSGNTE 104
Query: 95 PTQPAGQESEATRPATATSD-----------------SMLKVFF---ERVNPY------- 127
+PA E RP+ A + + L+ F ER Y
Sbjct: 105 QLRPA----EPPRPSVAPDEQRVRDLVLMGYDEPDVRAALRASFNHPERAIEYLITGIPT 160
Query: 128 ---------------------GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIG 166
GE+ + L +L T P F +R +++QNPELL VL +
Sbjct: 161 HVPAVNQTQTQTNANAADANLIGETAERLNYLATDPHFAHVRDLIRQNPELLELVLTHLR 220
Query: 167 QSNPALLELISHNQEAFVRMLNEPV 191
+S+PA E I +NQE F+ MLN P+
Sbjct: 221 ESDPAAFEAIRNNQEEFISMLNAPM 245
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 47/58 (81%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
S +PL FLR QPQFQQMR ++QQNP LLP +LQQ+G+ NP LL+ I+ +QE FV+MLN
Sbjct: 283 SANPLEFLRHQPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQMLN 340
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 65/112 (58%), Gaps = 12/112 (10%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ + + EE VK LKEKI+ EKG + + A QKLIYAGKIL+DD L EY
Sbjct: 4 ITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLKEY 63
Query: 68 NIDESKFIVVMLSKPK-------PTPAPYS-GPS-DPTQPAGQESEATRPAT 110
IDE F+VVM++KPK PTP P S P+ PT P + + P T
Sbjct: 64 KIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPET 115
>gi|326480573|gb|EGE04583.1| nucleotide excision repair protein RAD23 [Trichophyton equinum CBS
127.97]
Length = 255
Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 103/197 (52%), Gaps = 39/197 (19%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + +++ +KEKI +EKG + A QKLIY+GKIL DD + YNI+E FIV
Sbjct: 11 QKFVIDAEPSDKILDVKEKIATEKG--WPASQQKLIYSGKILQDDNTVESYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYSGP-----------------SDPTQPAGQESEATRPATATSDSMLKV 119
M+SKPK P+ + S P++ SE PAT +
Sbjct: 69 CMVSKPKAAPSASAASSSQTPAAAPSAPAPVTPSAPSRANAAASET--PATPS------- 119
Query: 120 FFERVNPYGGESE-----DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLE 174
P GG E L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +
Sbjct: 120 ------PAGGAGETAGSLGSLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQ 173
Query: 175 LISHNQEAFVRMLNEPV 191
LI NQE F+++L+E V
Sbjct: 174 LIGQNQEQFLQLLSEDV 190
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryzias latipes]
Length = 395
Score = 80.1 bits (196), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ EE VK LKE+I+ EKG E + QKLIYAGKILSDD AL EY
Sbjct: 3 ITLKTLQQQTFKIDIDEEETVKTLKERIEQEKGKESFSVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+PL FLR QPQF MR ++QQN LLP +LQ+IG+ NP LL+ IS++QE F++MLNEP
Sbjct: 248 NPLGFLRNQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISNHQEQFIQMLNEP 305
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 3/66 (4%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
+P GG +PL+FLR+QPQF MR ++QQN LLP +LQ+IG+ NP LL+ IS +QE F+
Sbjct: 172 SPSGG---NPLSFLRSQPQFHVMRQLIQQNAALLPALLQEIGRENPELLQEISSHQEQFI 228
Query: 185 RMLNEP 190
+MLNEP
Sbjct: 229 QMLNEP 234
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 5/93 (5%)
Query: 11 ITQNQWQQTVSHLDVQE--EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ ++++E +V LKE+I EKG +Y A+ QKLIYAGKIL D Q +SEY
Sbjct: 3 ITLKTLQQQTFKIEIEESEKVLALKERIAQEKGGDYAADNQKLIYAGKILDDKQCISEYK 62
Query: 69 IDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQ 101
I ES F+V+M++K KP AP P +PA Q
Sbjct: 63 IQESNFVVIMVTKAKPK-APEKAPE--AKPAEQ 92
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
EDPL FLR+ PQF+ MR +VQ NP LL LQ+I Q+NP L ++I+ NQE FV+MLN+P
Sbjct: 260 EDPLHFLRSTPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQMLNDP 318
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 79.3 bits (194), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
EDPL FLR+QPQF+QMR +++ NP LL ++QIGQ+NP LL++I NQEAFVRM
Sbjct: 245 EDPLNFLRSQPQFEQMRQMIRSNPSLLDAFIRQIGQTNPQLLQVIQQNQEAFVRM 299
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + +++ VK LKEK++ EKG +Y A QKLIYAGKI DD L YNID+
Sbjct: 7 KNLQQQTFTVEIELSATVKALKEKVEKEKGGDYPAVGQKLIYAGKIPQDDTTLESYNIDD 66
Query: 72 SKFIVVMLSK 81
KF+V+M++K
Sbjct: 67 KKFLVIMVTK 76
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 50/64 (78%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+E L FLR PQF+ MR+ VQ++P+ LP +LQ+IG+SNP LL+LIS NQEAF+ +LNEP
Sbjct: 213 AEGDLNFLRDFPQFRMMRSQVQRHPDTLPQLLQEIGRSNPQLLQLISQNQEAFIALLNEP 272
Query: 191 VAGD 194
G+
Sbjct: 273 ETGE 276
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQE--EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ ++V E +V LKE I EKGSE+ E Q+LIY+GKIL DD+AL EYN
Sbjct: 3 ITLKTLQQKTFKIEVDENDKVFALKELIAKEKGSEFPIECQRLIYSGKILDDDKALCEYN 62
Query: 69 IDESK-FIVVMLSKPK 83
ID K F+VVM KPK
Sbjct: 63 IDPVKNFVVVMSVKPK 78
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G ++ L+FLR QPQFQQMR ++ NP LL T++QQ+G +NP LL LI+ NQ+ F+R+L
Sbjct: 204 GAGTQGDLSFLRNQPQFQQMRNAIRDNPALLDTIIQQLGSNNPDLLRLITQNQDDFMRLL 263
Query: 188 NE 189
NE
Sbjct: 264 NE 265
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D VK +KEKI KG+ + A +QKLI G+I++D + Y++ KF+V+M+SK
Sbjct: 18 EIDDDCTVKDMKEKISEIKGAAFPAVHQKLIAQGRIMADQDKVKTYDLKSVKFVVIMVSK 77
Query: 82 P 82
P
Sbjct: 78 P 78
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 9/91 (9%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
VK LKEKI++EKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK T
Sbjct: 42 VKALKEKIETEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKATAT 101
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLK 118
P P GQ+S PAT ++ S K
Sbjct: 102 PMPSPV-----VGQQS---NPATTSTVSSSK 124
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
+PL FLR+QPQF Q+R +VQQNP LLP +L QIGQ+NP LL+ I + +AF+R+L EP
Sbjct: 196 NPLEFLRSQPQFDQLRQLVQQNPNLLPPLLAQIGQANPQLLQAIDQHPQAFLRLLQEPAG 255
Query: 193 G 193
G
Sbjct: 256 G 256
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 46/58 (79%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
S +PL FLR QPQFQQMR ++QQNP LLP + QQ+G+ NP LL+ I+ +QE FV+MLN
Sbjct: 283 SANPLEFLRHQPQFQQMRQIIQQNPSLLPALQQQLGRDNPQLLQQITQHQERFVQMLN 340
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 65/112 (58%), Gaps = 12/112 (10%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ + + EE VK LKEKI+ EKG + + A QKLIYAGKIL+DD L EY
Sbjct: 4 ITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLKEY 63
Query: 68 NIDESKFIVVMLSKPK-------PTPAPYS-GPSD-PTQPAGQESEATRPAT 110
IDE F+VVM++KPK PTP P S P+ PT P + + P T
Sbjct: 64 KIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPET 115
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%), Gaps = 8/81 (9%)
Query: 122 ERVNPYGGE--------SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALL 173
ERV+ G E SEDP++ L + PQFQQMR +VQ NPELLP ++QQIG N LL
Sbjct: 308 ERVDTPGDEHSASESPSSEDPISALASLPQFQQMRALVQANPELLPQLIQQIGADNSELL 367
Query: 174 ELISHNQEAFVRMLNEPVAGD 194
LI N++ F+ LN P++ D
Sbjct: 368 RLIQENEQGFLEFLNAPISQD 388
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM-LSKPKPTP 86
+V +K+KI++EKG+E+ A Q LI++GK++ D++ L +Y + + FIVVM +SKP P
Sbjct: 136 QVSDVKKKIEAEKGNEFSASSQTLIHSGKVMEDEKTLKQYKVTDKGFIVVMAVSKPSKEP 195
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 44/58 (75%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FL QPQFQQMR ++QQN LLP +LQ IG NP LL+ IS ++E F++MLNEPV
Sbjct: 275 PLEFLWNQPQFQQMRQIIQQNTSLLPALLQXIGGENPQLLQQISQHKEHFIQMLNEPV 332
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 49/73 (67%), Gaps = 5/73 (6%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D +E VK LKEKI+SEK E QKLIYAG+IL+DD AL EY IDE F+VVM+
Sbjct: 17 IDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALKEYKIDEKIFVVVMVMV 76
Query: 82 PKP----TPAPYS 90
KP TPAP +
Sbjct: 77 TKPKAVSTPAPAT 89
>gi|159162808|pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + QKLIYAGKIL+DD AL EY
Sbjct: 6 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 65
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 66 KIDEKNFVVVMVTKPK 81
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 85 TPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQ 143
PA + P++P+ A + A PA+ + + L +F + + GG L FLR Q
Sbjct: 239 APASFGQPANPS--AQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQ 296
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
FQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G + N+LG
Sbjct: 297 FQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 355
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+ +++ V +K+ I++ +G++ Y A Q LI+ GK+L D+ + E + E+ FIVVML+K
Sbjct: 17 VKLEDSVADVKKNIETVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVVMLNK 76
Query: 82 PKP 84
KP
Sbjct: 77 SKP 79
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQF 144
PA P++P PA + A PA+ + + L +F + + GG L FLR QF
Sbjct: 160 PASAGQPANP--PAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQF 217
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G + N+LG
Sbjct: 218 QALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 275
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQF 144
PA P++P PA + A PA+ + + L +F + + GG L FLR QF
Sbjct: 241 PASAGQPANP--PAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQF 298
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G + N+LG
Sbjct: 299 QALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 356
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+S +G++ Y A Q LI+ GK+L D+ + E + E+ FI
Sbjct: 11 THFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFI 70
Query: 76 VVMLSKPKP 84
V+M++K KP
Sbjct: 71 VIMMNKSKP 79
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQF 144
PA P++P PA + A PA+ + + L +F + + GG L FLR QF
Sbjct: 242 PASAGQPANP--PAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQF 299
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G + N+LG
Sbjct: 300 QALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 357
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+S +G++ Y A Q LI+ GK+L D+ + E + E+ FI
Sbjct: 11 THFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFI 70
Query: 76 VVMLSKPKP 84
V+M++K KP
Sbjct: 71 VIMMNKSKP 79
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 45/59 (76%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
EDPL FLR+ PQF+ MR +VQ NP LL LQ+I Q+NP L ++I+ NQE FV+MLN+P
Sbjct: 189 EDPLHFLRSTPQFETMRRLVQSNPGLLSNFLQEIRQANPRLFQMINENQERFVQMLNDP 247
>gi|167541066|gb|ABZ82043.1| DNA repair protein, partial [Clonorchis sinensis]
Length = 156
Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
SEDP++ L + PQFQQMR +VQ NPELLP ++QQIG N LL LI N++ F+ LN P
Sbjct: 14 SEDPISALASLPQFQQMRALVQANPELLPQLIQQIGADNSELLRLIQENEQGFLEFLNAP 73
Query: 191 VAGD 194
++ D
Sbjct: 74 ISQD 77
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 63/99 (63%), Gaps = 4/99 (4%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E V+ LKEKI++EKG E + QKLIYAGKILSDD + EY IDE F
Sbjct: 12 QQTFKIRMEPDETVRVLKEKIEAEKGKEAFPVSGQKLIYAGKILSDDVPIKEYKIDEKNF 71
Query: 75 IVVMLSKPKP-TPAPYSGPSDPTQPAGQESEATRPATAT 112
+VVM++K K + AP S P+D P + + ++ P AT
Sbjct: 72 VVVMVTKNKTGSGAPVSSPTD-AAPTAEPTPSSGPTAAT 109
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
E E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNE
Sbjct: 224 EGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNE 283
Query: 190 PVA 192
P+
Sbjct: 284 PLG 286
>gi|9955429|dbj|BAB12223.1| RAD23 homolog [Hydractinia echinata]
Length = 101
Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 45/55 (81%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L+FLR PQFQ MR VQ++PE LP +LQ+IGQSNP LL+LIS NQEAF+ +LNE
Sbjct: 6 LSFLRNLPQFQLMRDQVQEHPESLPQLLQEIGQSNPQLLQLISQNQEAFIALLNE 60
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVV 151
PS+PT+ G + P S S L +F + G L FLR PQFQ +RT+V
Sbjct: 200 PSNPTETGGVTT-GVVPGVPNS-SPLNMFPQETISGAGAGAGSLDFLRNNPQFQALRTMV 257
Query: 152 QQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q NP++L VLQ++G+ NP LL LI + F++++NEP+ G
Sbjct: 258 QSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDG 299
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 11 SHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKSK 78
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 48/67 (71%), Gaps = 4/67 (5%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
+P GG PL FLR+Q F QMR +VQ NPE L +LQQ+GQ+NP LLELI ++Q F+
Sbjct: 244 SPQGG----PLGFLRSQAVFSQMRQIVQSNPEALAPMLQQLGQNNPQLLELIRNHQSEFM 299
Query: 185 RMLNEPV 191
++NEP+
Sbjct: 300 ELMNEPI 306
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
V+ LKE+I+ ++G +LA+ KLIY GK+LSDD + + I+ F+VVM++K +P+
Sbjct: 28 VRALKERIEKDRGDAFLADDLKLIYGGKLLSDDTIIEDVKINPKNFVVVMVAKKQPS 84
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 9/120 (7%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATS-DSMLKVF------FERVNPYGGESE--DP 134
P P+ +S P++P+ P+ +E PA +S + ++VF + V GG +P
Sbjct: 296 PQPSRHSTPANPSTPSTEEPPQQPPAPPSSVINDVEVFQGPVSGSQPVTAGGGSGSIGNP 355
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QPQFQQMR ++QQNP LLP +LQQ+G+ NP LL+ I+ +QE FV+MLNEP AGD
Sbjct: 356 LEFLRNQPQFQQMRQIIQQNPALLPALLQQLGRDNPQLLQQITEHQERFVQMLNEPQAGD 415
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEY-QKLIYAGKILSDDQALSEY 67
IT QQ +++ E VK LKEKI+ +G + QKLIYAGKIL+DD L EY
Sbjct: 4 ITLKTLQQQTFRIEIDPELTVKALKEKIEEHRGKDAFPSVGQKLIYAGKILNDDIPLKEY 63
Query: 68 NIDESKFIVVMLSKPKPT 85
IDE F+VVM++KPKPT
Sbjct: 64 KIDEKNFVVVMVTKPKPT 81
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ +E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPEETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K S P + + A ES AT PA S
Sbjct: 72 VVVMVTKAKAGQG-SSAPPEASPTAAPESSATSPAAPAS 109
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQI 165
E+PL FLR QPQFQ MR V+QQNP LLP +L+
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLRHC 261
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVV 151
PS+PT+ G + P S S L +F + G L FLR PQFQ +RT+V
Sbjct: 47 PSNPTETGGVTT-GVVPGVPNS-SPLNMFPQETISGAGAGAGSLDFLRNNPQFQALRTMV 104
Query: 152 QQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q NP++L VLQ++G+ NP LL LI + F++++NEP+ G
Sbjct: 105 QSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLINEPMDG 146
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 95 PTQ-PAGQESEATRPATATSDSMLKVFFERVNPYGGES-EDPLAFLRTQPQFQQMRTVVQ 152
PTQ PAGQ ++T P+ A ++ GG+S + L L PQFQ +R VQ
Sbjct: 188 PTQRPAGQSQQSTPPSAAPRPPQ-----GGLSAGGGQSASNVLQGLSQLPQFQALRAAVQ 242
Query: 153 QNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
QNP LLP++LQ+IGQ NP LL+LI+ NQ+ FV +LN+P
Sbjct: 243 QNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQP 280
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ ++++E V LK+ I++ +G + A QKLIY+GKIL+D Q LS+Y+
Sbjct: 3 ITVKTLQQKTFKIEIEESASVLDLKKAIEANQGEAFPAAGQKLIYSGKILNDSQPLSDYS 62
Query: 69 IDESKFIVVMLSK 81
I ES F+VVM+SK
Sbjct: 63 IQESNFVVVMVSK 75
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
E+PL FLR QPQF MR +++ NP LL +LQ +GQSNP LL+ I+ +Q+ F+ MLNEPV
Sbjct: 182 ENPLEFLRDQPQFNNMRQLIRSNPTLLSALLQNLGQSNPQLLQHINDHQQEFIEMLNEPV 241
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ ++++E VKQLKEK++ EKG E + A KLIYAGKIL DD LS+Y
Sbjct: 3 VTFKTLQQQTFKIEIEENATVKQLKEKVEGEKGKESFPAAGLKLIYAGKILQDDLPLSQY 62
Query: 68 NIDESKFIVVMLSK-PKPTP 86
IDE F+VVM++K PK P
Sbjct: 63 KIDEKNFVVVMVTKQPKRNP 82
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 95 PTQ-PAGQESEATRPATATSDSMLKVFFERVNPYGGES-EDPLAFLRTQPQFQQMRTVVQ 152
PTQ PAGQ ++T P+ A ++ GG+S + L L PQFQ +R VQ
Sbjct: 234 PTQRPAGQSQQSTPPSAAPRPPQ-----GGLSAGGGQSASNVLQGLSQLPQFQALRAAVQ 288
Query: 153 QNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
QNP LLP++LQ+IGQ NP LL+LI+ NQ+ FV +LN+P
Sbjct: 289 QNPGLLPSLLQEIGQHNPELLQLINQNQQEFVDLLNQP 326
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ ++++E V LK+ I++ +G + A QKLIY+GKIL+D Q LS+Y+
Sbjct: 3 ITVKTLQQKTFKIEIEESASVLDLKKAIEANQGEAFPAAGQKLIYSGKILNDSQPLSDYS 62
Query: 69 IDESKFIVVMLSK 81
I ES F+VVM+SK
Sbjct: 63 IQESNFVVVMVSK 75
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 3/99 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 29 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 88
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S P + + A ES T P+ S
Sbjct: 89 VVVMVTKAKNSPG-TSVPPEASSTAAPESSTTSPSAPAS 126
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 246 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 304
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia
chinensis]
Length = 302
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 28 EVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
+VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK
Sbjct: 3 QVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 59
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 11 ITQNQWQQTVSHLDV---QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
IT +Q ++V Q+ V+ LKEK+ +E G Y + Q+LIY GKI+ DD LS+Y
Sbjct: 3 ITLKTLKQQTFFVEVDVEQDTVRTLKEKLHAESGLAYPVDRQRLIYLGKIMEDDHLLSQY 62
Query: 68 NIDESKFIVVMLSK-PKPTPAPYSGPSDPTQPAGQESEATR------PATATS 113
+D+ KFIVVM K P PAP S +PA +++ A R PAT+ S
Sbjct: 63 KLDDKKFIVVMSKKPPADEPAPEQKESGDGKPADKDTAAGRVEGTGEPATSAS 115
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 41/57 (71%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+PLAFLR P F+ MR +++ +P +LP +++++ SNP LL +I+ Q+ F+ ++NE
Sbjct: 258 NPLAFLRDNPVFEDMRRILRDDPSMLPYLMRRMQASNPDLLNIIAEYQDEFLALINE 314
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 44/215 (20%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q+T++ ++ E+V+ LK+++ S E +LIY+G+I+ D LSEY I E + I
Sbjct: 10 QRTITLEMNETEDVRTLKQRLSSLSEVALPPENVQLIYSGRIMEDAMPLSEYRIAEGRII 69
Query: 76 VVMLSKPKPTPAPYSGPSDPT----QPAGQESEATRPATATSD----------------- 114
V+M K P S P+ P ++ P+ A+++
Sbjct: 70 VLMGKKKVDERPPVEQVSPPSPLAAGPIAMRTQDVTPSIASNEQLVRELMSMGYGEQDVR 129
Query: 115 SMLKVFF---ERVNPY-------------------GGESEDPLAFLRTQPQFQQMRTVVQ 152
S L+ F ER Y G+S + L L P+ +MR +++
Sbjct: 130 SALRASFNHPERAIEYLINGIPQEASPQQELAEIPSGQSTEELQHLMADPRLTRMREMIR 189
Query: 153 QNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+NPEL+ +++++ +++PA E + H+QE F+ ML
Sbjct: 190 ENPELMQLIMERLAETDPAAFEAVQHDQEGFMSML 224
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+ E+PL LR P F Q+R +VQ NP +LP VLQ IG SNP LLELI+ NQ+AF+ ML
Sbjct: 246 DDENPLGALRHHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEML 303
Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN-IDESKFIVVMLSK 81
+ +E V +KEK++ ++ A QKL++AGKIL+D Q + + + + E+ +VVM++K
Sbjct: 17 VGAEETVLNVKEKVE-QRWPHMPAARQKLVHAGKILADAQKIKDCSALKENDRLVVMVTK 75
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+ E+PL LR P F Q+R +VQ NP +LP VLQ IG SNP LLELI+ NQ+AF+ ML
Sbjct: 246 DDENPLGALRHHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEML 303
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN-IDESKFIVVMLSK 81
+ +E V +KEK++ ++ A QKL++AGKIL+D Q + + + + E+ +VVM++K
Sbjct: 17 VGAEETVLNVKEKVE-QRWPHMPAARQKLVHAGKILADAQKIKDCSALKENDRLVVMVTK 75
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
L FLR PQF+Q+R +VQ NP +LP ++QQI QSNPAL+ I NQE FV +LN P
Sbjct: 202 LEFLRQLPQFEQLRELVQSNPAILPQIIQQIAQSNPALMRAIQSNQEQFVNLLNAP 257
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 11 ITQNQWQQTVSHLDVQEEVK--QLKEKIQSEKGS-EYLAEYQKLIYAGKILSDDQALSEY 67
IT Q H++V + +LK KI ++G EY + QKLIY GKIL D Q + E
Sbjct: 3 ITFKTISQVTFHVEVDPSITIGELKAKIAEQEGQLEYPVDGQKLIYNGKILDDAQTVEEL 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGP-SDPTQPAGQESEATRPAT 110
ID +KFIVVM+++ K P + P S P PA +E A+ P+T
Sbjct: 63 KIDAAKFIVVMVARKKAPPPAANAPESTPATPAVEEGAASVPST 106
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 60/107 (56%), Gaps = 14/107 (13%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPAGQESEATRPA 109
+VVM++K K PT AP S S P PA S PA
Sbjct: 72 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPLAPASGMSHPPSPA 118
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 49/65 (75%)
Query: 126 PYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
P E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++
Sbjct: 223 PTEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQ 282
Query: 186 MLNEP 190
MLNEP
Sbjct: 283 MLNEP 287
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S PS+ + A ES + P+ S
Sbjct: 72 VVVMVTKAKTSPG-TSVPSEASPTATPESSTSFPSAPAS 109
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 232 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 275
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E + QLKEKI EKG + A QKLIY+GKIL D + YNI+E FIV M+SKPK P
Sbjct: 68 ETIGQLKEKISQEKG--WDAAQQKLIYSGKILQDVNTIESYNIEEKGFIVCMVSKPKAQP 125
Query: 87 APYSGPSDPTQ 97
AP S P+ P+Q
Sbjct: 126 AP-STPAGPSQ 135
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E + D
Sbjct: 298 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDD 357
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 2/101 (1%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMELDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
+VVM++K K +P P A + S + PA A+ S
Sbjct: 72 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFSPAPASGMS 112
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E + QLKEKI EKG + A QKLIY+GKIL D + YNI+E FIV M+SKPK P
Sbjct: 21 ETIGQLKEKISQEKG--WDAAQQKLIYSGKILQDVNTIESYNIEEKGFIVCMVSKPKAQP 78
Query: 87 APYSGPSDPTQ 97
AP S P+ P+Q
Sbjct: 79 AP-STPAGPSQ 88
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E + D
Sbjct: 251 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDD 310
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S PS+ + A ES + P+ S
Sbjct: 72 VVVMVTKAKTSPG-TSVPSEASPTATPESSTSFPSAPAS 109
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 371
Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E + QLKEKI EKG + A QKLIY+GKIL D + YNI+E FIV M+SKPK P
Sbjct: 21 ETIGQLKEKISQEKG--WDAAQQKLIYSGKILQDVNTIESYNIEEKGFIVCMVSKPKAQP 78
Query: 87 APYSGPSDPTQ 97
AP S P+ P+Q
Sbjct: 79 AP-STPAGPSQ 88
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E + D
Sbjct: 251 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDIDDD 310
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ +E V+ LKEKI++EKG + + QKLIYAGKILSDD + EY IDE F
Sbjct: 12 QQTFKIRMEPEETVRVLKEKIEAEKGKDSFPVSGQKLIYAGKILSDDVPIKEYKIDEKNF 71
Query: 75 IVVMLSK-------PKPTPAPYSGPSDPTQPAGQ 101
+VVM++K P P P+ + S+P +GQ
Sbjct: 72 VVVMVTKNKAGSGAPAPLPSEATSTSEPAPSSGQ 105
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
E E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNE
Sbjct: 228 EGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQMLNE 287
Query: 190 PVA 192
P+
Sbjct: 288 PLG 290
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S PS+ + A ES + P+ S
Sbjct: 72 VVVMVTKAKTSPG-TSVPSEASPTATPESSTSFPSAPAS 109
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 231 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 289
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PL FLR P+F QMR V++Q PELL +VL +IG++NP LL +I +Q+ FV MLNEP
Sbjct: 256 PLNFLREDPRFIQMRRVIRQRPELLSSVLARIGETNPVLLSIIREHQDDFVAMLNEP 312
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 47 EYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78
E Q+LIYAG++L +D AL Y+IDE KF+VVM
Sbjct: 41 ELQQLIYAGRVLDNDNALKTYSIDERKFLVVM 72
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L LRT P FQQ+R+VVQQ+P +LP +L +IGQSNP +L+LI+ NQE F+RM+
Sbjct: 236 LESLRTNPLFQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM 288
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
KLI+AG+IL+D Q + + I E + +VV+LSK
Sbjct: 64 KLIFAGRILNDSQTVQDVGIKEGERLVVLLSK 95
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L LRT P FQQ+R+VVQQ+P +LP +L +IGQSNP +L+LI+ NQE F+RM+
Sbjct: 215 LESLRTNPLFQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM 267
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++++K+ IQ E A KLI+AG+IL+D Q + + I E + +VV+LSK
Sbjct: 23 IEKVKQAIQ-ELNPVMEASRLKLIFAGRILNDSQTVQDVGIKEGERLVVLLSK 74
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 28 EVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F+VVM++K K
Sbjct: 62 QVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYKIDEKNFVVVMVTKAKAGL 121
Query: 87 APYSGPSDPTQPA 99
A S PS+P+ PA
Sbjct: 122 A-TSAPSEPSAPA 133
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Query: 122 ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQE 181
E+ P GGE +PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE
Sbjct: 262 EQPAPEGGE--NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQE 319
Query: 182 AFVRMLNEPVA 192
F++MLNEP
Sbjct: 320 QFIQMLNEPTG 330
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 43/53 (81%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L LRT P FQQ+R+VVQQ+P +LP +L +IGQSNP +L+LI+ NQE F+RM+
Sbjct: 215 LESLRTNPLFQQLRSVVQQDPRILPELLVRIGQSNPEILQLITENQEEFIRMM 267
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++++K+ IQ E A KLI+AG+IL+D Q + + I E + +VV+LSK
Sbjct: 23 IEKVKQAIQ-ELNPVMEASRLKLIFAGRILNDSQTVQDVGIKEGERLVVLLSK 74
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 25/123 (20%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEYHIDEKNF 71
Query: 75 IVVMLSK------------------PKPT----PAPYSGPSDPTQPAGQESEATRPATAT 112
+VVM++K P+P+ PAP SG S P P+ +E +++ +AT
Sbjct: 72 VVVMVTKAKAGQGTPAPPEASPTAAPEPSTPFPPAPASGMSHPP-PSNREDKSSSEESAT 130
Query: 113 SDS 115
+ S
Sbjct: 131 TTS 133
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 98 PAGQE-SEATRPATATSDSMLKVFFERVNPYGGES-EDPLAFLRTQPQFQQMRTVVQQNP 155
PA Q+ S+ P++ + + L +F + + G + L FLR PQFQ +R +VQ NP
Sbjct: 226 PAAQDASQLAVPSSGPNANPLDLFPQGLTNAGSNAGAGNLDFLRNSPQFQALRAMVQANP 285
Query: 156 ELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+ NVLG
Sbjct: 286 QILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGE---GNVLG 329
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+S +G + Y A Q LI+ GK+L D L E + E+ F+
Sbjct: 11 THFEIEVKPEDSVADVKKNIESVQGQDVYPAAQQMLIHQGKVLKDTTTLEENKVAENSFV 70
Query: 76 VVMLSKPK----PTPAPYSGPSDPTQPAGQESEATRPAT 110
V+MLSK K T + + S+ QP G +A + T
Sbjct: 71 VIMLSKNKVSSTGTSSISAALSNTAQPDGSTDQARQTIT 109
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K K PT AP S S P PA S P TA D
Sbjct: 72 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPASGMSHP--PPTARED 121
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GGE +PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++ML
Sbjct: 226 GGE--NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQML 283
Query: 188 NEP 190
NEP
Sbjct: 284 NEP 286
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K K PT AP S S P PA S P TA D
Sbjct: 72 VVVMVTKAKAGPGTSAPPETSPTAAPESSTSFPPAPASGMSHP--PPTAKED 121
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
++PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 DNPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryzias latipes]
Length = 421
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT+ +D ++ VK LKEKI++E+G + + QKLIYAGKIL DD + +Y IDE F
Sbjct: 10 QQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIKDYKIDEKNF 69
Query: 75 IVVMLSKPKP 84
+VVM+SK KP
Sbjct: 70 VVVMVSKAKP 79
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 37/44 (84%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PLAFLRTQPQF MR +QQNP LLPT+LQQ+G+ NP LL++
Sbjct: 354 ENPLAFLRTQPQFLHMRQAIQQNPALLPTLLQQLGRENPQLLQV 397
>gi|355715047|gb|AES05207.1| RAD23-like protein A [Mustela putorius furo]
Length = 182
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 62/112 (55%), Gaps = 16/112 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 29 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 88
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K K PT AP S S P PA S P TA D
Sbjct: 89 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPASGMSHP--PPTARED 138
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 25/123 (20%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEYHIDEKNF 71
Query: 75 IVVMLSK------------------PKPT----PAPYSGPSDPTQPAGQESEATRPATAT 112
+VVM++K P+P+ PAP SG S P P+ +E +++ +AT
Sbjct: 72 VVVMVTKAKAGQGTPAPPEASPTAAPEPSTPFPPAPASGMSHPP-PSNREDKSSSEESAT 130
Query: 113 SDS 115
+ S
Sbjct: 131 TTS 133
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P QPA +E SE + P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHP-QPAAREDKSPSEESAP 130
Query: 109 ATA 111
T+
Sbjct: 131 TTS 133
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 272
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 87 APYSGPSDPTQPAGQESEATRPATATS---DSMLKVFFERVNPYGGESEDPLAFLRTQPQ 143
AP S + PT P + +PA TS ++ F +V G L FLR Q
Sbjct: 224 APVS--AQPTNPPADAPQTAQPAAVTSAGPNANPLDLFPQVAISGAAGAGSLDFLRNSQQ 281
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
FQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEP G N+LG
Sbjct: 282 FQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGE--GNILG 338
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 21 SHLDV----QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++ Q+ V ++K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLEENKVAENTFI 70
Query: 76 VVMLSKPKPT 85
V+MLSK K T
Sbjct: 71 VIMLSKSKST 80
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 95 PTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQFQQMRTVVQQ 153
PTQ A Q + T ++ + + L +F + + G S L FLR PQFQ +R +VQ
Sbjct: 218 PTQ-APQGPQTTVASSGPNANPLDLFPQGLPSMGSNASAGTLDFLRNSPQFQALRAMVQA 276
Query: 154 NPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+ NVLG
Sbjct: 277 NPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGE---GNVLG 322
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+ G++ Y A Q LI+ GK+L D L E + ES F+
Sbjct: 11 THFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLDENQVAESSFV 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKNK 78
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 14/97 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPA 99
+VVM++K K PT AP S S P PA
Sbjct: 72 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPA 108
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 272
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E++ Q+KEKI +EKG E QKLIY+GKIL DD + Y I+E FIV M SKPK P
Sbjct: 21 EKIGQVKEKISAEKGWE--PSTQKLIYSGKILQDDNTIESYKIEEKGFIVCMTSKPKAAP 78
Query: 87 APYSGPSDPTQP 98
+ + PS P +P
Sbjct: 79 SKPAEPSTPAKP 90
Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR+ PQFQQ+R VVQQ P++L +LQQ+ NP L ++I+ N E F+++L E
Sbjct: 281 LEFLRSNPQFQQLRQVVQQQPQMLEPILQQVAAGNPQLAQIITQNPEQFMQLLAE 335
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 51/94 (54%), Gaps = 18/94 (19%)
Query: 95 PTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQN 154
P +PAG E EA P + DS PL FL + P F Q+R +VQ+
Sbjct: 169 PDEPAGGEGEAVVPQELSEDS------------------PLYFLASNPSFLQLRQLVQEQ 210
Query: 155 PELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
P LLP++LQQI SNP L+ LI+ NQE F +LN
Sbjct: 211 PHLLPSMLQQIAASNPDLVSLINENQEDFYILLN 244
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ ++K I+ KG +Y + K+IY GK+L D L+ N E F+VVM S
Sbjct: 23 IGEVKAAIEQSKGDKYPKDGLKVIYQGKVLGDSDTLASANFQEKDFLVVMAS 74
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P QPA +E SE + P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHP-QPAAREDKSPSEESAP 130
Query: 109 ATA 111
T+
Sbjct: 131 TTS 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P QPA +E SE + P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHP-QPAAREDKSPSEESAP 130
Query: 109 ATA 111
T+
Sbjct: 131 TTS 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 89 YSG-PSDPTQPA--------GQESEATRPATATSDSMLKVF-FERVNPYGGESEDPLAFL 138
YSG P T PA G+E A P+ + S L +F E V+ G L FL
Sbjct: 183 YSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFL 242
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNK 198
R QFQQ+R++V NP++L +LQ++G+ NP LL LI NQ F+++LNEP G +
Sbjct: 243 RGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 302
Query: 199 NVL 201
++
Sbjct: 303 DIF 305
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 21 SHLDVQ--EEVKQLKEKIQ-SEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVV 77
SH +++ + +K+ I+ S+ Y Q LI+ GK+L D+ L E + E F+VV
Sbjct: 11 SHFEIRVLPTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVV 70
Query: 78 MLSKPKPTPAPYSGP 92
MLSK K A +GP
Sbjct: 71 MLSKSK--TASSAGP 83
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 57/97 (58%), Gaps = 14/97 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPA 99
+VVM++K K PT AP S S P PA
Sbjct: 72 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPPAPA 108
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GGE +PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++ML
Sbjct: 226 GGE--NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQML 283
Query: 188 NEP 190
NEP
Sbjct: 284 NEP 286
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P QPA +E SE + P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHP-QPAAREDKSPSEESAP 130
Query: 109 ATA 111
T+
Sbjct: 131 TTS 133
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL++
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQV 271
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 89 YSG-PSDPTQPA--------GQESEATRPATATSDSMLKVF-FERVNPYGGESEDPLAFL 138
YSG P T PA G+E A P+ + S L +F E V+ G L FL
Sbjct: 185 YSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFL 244
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNK 198
R QFQQ+R++V NP++L +LQ++G+ NP LL LI NQ F+++LNEP G +
Sbjct: 245 RGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 304
Query: 199 NVL 201
++
Sbjct: 305 DIF 307
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 21 SHLDVQ----EEVKQLKEKIQ-SEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ S+ Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGP 92
VVMLSK K A +GP
Sbjct: 71 VVMLSKSK--TASSAGP 85
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 24/112 (21%)
Query: 27 EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK-- 83
+EVK LKEKI++EKG + + QKLIYAGKIL+DD + EY+IDE F+VVM++K K
Sbjct: 35 QEVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILNDDVPIKEYHIDEKNFVVVMVTKAKAG 94
Query: 84 ----------PT----------PAPYSGPSDPTQPAGQESEATRPATATSDS 115
PT PAP SG S P PA +E ++ +AT+ S
Sbjct: 95 QSTPAPPEVSPTAAPESSTPFPPAPTSGMSHPP-PASREDKSPSEESATATS 145
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 241 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 299
>gi|341902355|gb|EGT58290.1| hypothetical protein CAEBREN_15682 [Caenorhabditis brenneri]
Length = 316
Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 86/221 (38%), Gaps = 64/221 (28%)
Query: 31 QLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYS 90
++K I +G E+ E QKLIY +++ D + E D +KFIV M +K K P P +
Sbjct: 17 EVKVMIAEARGEEFPVELQKLIYNARLIDDATKVGELGFDPAKFIVAMTTKKKAEP-PVA 75
Query: 91 GPS---------------------DPTQPAGQESEAT---------------RPATATSD 114
G + P +ES A R A + D
Sbjct: 76 GAEGAGPAPPVVAPAAAAPAAAAPEALTPEQEESIAAIMEIGADREQAVAVLRAARWSRD 135
Query: 115 SMLKVFFE----------------RVNPYGGES-----------EDPLAFLRTQPQFQQM 147
F R GGE+ + L L PQ +++
Sbjct: 136 RAAGYLFNGIPEDSVVQEPAPQEPRAEEQGGEAPAVDAEAEAQEHEDLDILANLPQLEEI 195
Query: 148 RTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
R +VQQNPE L +LQQI NP L+ I +NQ+ F+ MLN
Sbjct: 196 RQLVQQNPENLAPILQQIAAHNPRLVRTIQNNQQEFMDMLN 236
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 27/122 (22%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE---SEATRPA 109
+VVM++K K PT PAP SG S P AG++ SE + P
Sbjct: 72 VVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAGEDKSPSEESAPT 131
Query: 110 TA 111
T+
Sbjct: 132 TS 133
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 272
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 43/55 (78%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR PQFQQ+R V+Q++P++L +LQQ+GQ+NP L +LIS N E F+R+L E
Sbjct: 286 LDFLRNNPQFQQLRQVIQEHPQMLEPILQQVGQANPQLAQLISTNPEGFLRLLGE 340
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
+ +K +IQ+EKG E KLIY+GKIL D Q + YNIDE FIV M+SK K
Sbjct: 27 ISTVKARIQTEKGWE--PSTVKLIYSGKILQDAQTVGSYNIDEKGFIVCMVSKAK 79
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 67/122 (54%), Gaps = 27/122 (22%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE---SEATRPA 109
+VVM++K K PT PAP SG S P AG++ SE + P
Sbjct: 72 VVVMVTKTKAVQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAGEDKSPSEESAPT 131
Query: 110 TA 111
T+
Sbjct: 132 TS 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|259155371|ref|NP_001158747.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223646842|gb|ACN10179.1| UV excision repair protein RAD23 homolog B [Salmo salar]
gi|223672703|gb|ACN12533.1| UV excision repair protein RAD23 homolog B [Salmo salar]
Length = 131
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ + VK LKEKI++E+G + + QKLIYAGKIL DD + +Y
Sbjct: 3 ITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIKDY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPS 93
IDE F+VVM+SK K T A S PS
Sbjct: 63 KIDEKNFVVVMVSKAKSTTAA-STPS 87
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 68/123 (55%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P PA +E SE + P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPP-PAAREDKSPSEESAP 130
Query: 109 ATA 111
AT+
Sbjct: 131 ATS 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 8/98 (8%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQ 62
+L + SD+ Q Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+
Sbjct: 61 VLPGNSSDLKQ---QKFVIDAEPSETVGQVKEKISKEKGWE--VPQLKLIYSGKILQDDK 115
Query: 63 ALSEYNIDESKFIVVMLSKPKP---TPAPYSGPSDPTQ 97
A+ YNI+E FIV M+SKPK T P PS P++
Sbjct: 116 AIESYNIEEKGFIVCMVSKPKASSSTATPSQAPSTPSR 153
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ 141
P+P PA +G + P G+E A A + + R GE L FLR
Sbjct: 269 PQP-PAASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNN 327
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 328 PHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 375
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 40/55 (72%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+PL LR P F Q+R +VQ NP +LP VLQ IG SNP LLELI+ NQ+AF+ ML
Sbjct: 240 NPLGALRHHPAFNQIRQMVQANPAMLPQVLQLIGNSNPQLLELITQNQDAFLEML 294
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 21 SHLDV--QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY-NIDESKFIVV 77
+ LDV +E + LKEK++ +K A QKL++AGKIL+D Q + E ++ E+ +VV
Sbjct: 13 AELDVGPEETIFNLKEKVE-QKWPHMPAVRQKLVHAGKILADSQKVKECPSLKENDRLVV 71
Query: 78 MLSK 81
M++K
Sbjct: 72 MVTK 75
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 97 QPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQN 154
Q AG + PA+ +S F E V G L FLR QFQQ+RT+V N
Sbjct: 198 QMAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSN 257
Query: 155 PELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
P++L +LQ++G+ NP LL LI NQ F++++NEP G + ++L
Sbjct: 258 PQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGDADML 304
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKNNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKV 119
VVMLSK K A +G S QPA + +T+P T ++ + V
Sbjct: 71 VVMLSKSK--TAGSAGQSS-VQPASATTSSTKPETPSTTQSIAV 111
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG + QKLIY+GKIL D + YNI+E FIV
Sbjct: 451 QKFVIEAEPSETVGQVKEKISQEKG--WDVAQQKLIYSGKILQDANTIESYNIEEKGFIV 508
Query: 77 VMLSKPKPTPAPYSGPS 93
M+SKPKP P+ +G S
Sbjct: 509 CMVSKPKPAPSTSAGVS 525
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR+ P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+E + D
Sbjct: 706 LDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD 765
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 65/101 (64%), Gaps = 12/101 (11%)
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVV 151
PS P Q + ++A P + T+++ P E E+PLAFLRTQPQF MR +
Sbjct: 204 PSSPVQESNPPAQA--PTSGTTEA----------PSVPEGENPLAFLRTQPQFLHMRQAI 251
Query: 152 QQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
QQNP LLP +LQQ+G+ NP LL+ IS +QE F++MLNEPV
Sbjct: 252 QQNPALLPALLQQLGRENPQLLQQISQHQELFIQMLNEPVG 292
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT+ +D ++ VK LKEKI++E+G + + QKLIYAGKIL DD + +Y IDE F
Sbjct: 10 QQTIQIEIDPEQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIKDYKIDEKNF 69
Query: 75 IVVML 79
+VVM+
Sbjct: 70 VVVMV 74
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 70.5 bits (171), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG + QKLIY+GKIL D + YNI+E FIV
Sbjct: 451 QKFVIEAEPSETVGQVKEKISQEKG--WDVAQQKLIYSGKILQDANTIESYNIEEKGFIV 508
Query: 77 VMLSKPKPTPAPYSGPS 93
M+SKPKP P+ +G S
Sbjct: 509 CMVSKPKPAPSTSAGVS 525
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR+ P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+E + D
Sbjct: 706 LDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD 765
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 26/123 (21%)
Query: 83 KPTPAPYSGP-SDPTQ--PAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLR 139
+P PAP SGP ++P P G + + PA A + L FLR
Sbjct: 238 QPVPAPSSGPNANPLDLFPQGIPNVGSNPAGAGT---------------------LDFLR 276
Query: 140 TQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKN 199
QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G N
Sbjct: 277 NSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGGE--GN 334
Query: 200 VLG 202
+LG
Sbjct: 335 ILG 337
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++Q + V +K I++ +GS+ Y A Q LI+ GK+L D L E + E+ F+
Sbjct: 11 THFEIQVKPEDTVADVKANIEAVQGSDVYPASQQMLIHQGKVLKDGTTLDENKVAENSFV 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKNK 78
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 52/76 (68%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT +Q + +++ EE VK LKEKI EKG++ + QKLIYAGKIL D ++L EY
Sbjct: 3 ITIKTLKQNIFKIEIDEEEPVKVLKEKIAKEKGNDNFPVAGQKLIYAGKILDDSKSLKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
I++ KFIV M++KPK
Sbjct: 63 KIEDGKFIVAMVTKPK 78
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L P+ Q M +QQNP LL LQQI QSNP+L ++S + E FV L
Sbjct: 216 LMDNPEIQVMAQQIQQNPHLLQPYLQQIEQSNPSLFNMVSSHPEEFVSFL 265
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 56/99 (56%), Gaps = 15/99 (15%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F+VVM++K K
Sbjct: 38 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 97
Query: 84 --------PTPAPYSGPSDPTQPAGQESEATRPATATSD 114
PT AP S S P PA S P TA D
Sbjct: 98 TSVPPEASPTAAPESSTSFPPAPASGMSHP--PPTARED 134
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 2/63 (3%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GGE +PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++ML
Sbjct: 239 GGE--NPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQML 296
Query: 188 NEP 190
NEP
Sbjct: 297 NEP 299
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 90 SGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRT 149
S P T G S P S S L +F + G L FLR PQFQ +R+
Sbjct: 184 SYPISQTTETGGASVGAVPGVPNS-SPLNMFPQETISGAGAEIGSLDFLRNNPQFQALRS 242
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+VQ NP++L VLQ++G+ NP+LL LI + F++++NEPV G
Sbjct: 243 MVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEG 286
Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ LS+ + E F+
Sbjct: 11 SHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKVSEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKGK 78
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKIL 58
G L IT QQ + ++ E VK LKEKI++EKG + + QKLIYAGKIL
Sbjct: 1 GPLGSSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKIL 60
Query: 59 SDDQALSEYNIDESKFIVVMLSKPK------------PTPAPYSGPSDPTQP 98
SDD + +Y IDE F+VVM++K K PT AP S S P P
Sbjct: 61 SDDVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 112
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 234 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 292
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 28/124 (22%)
Query: 82 PKPTPAPYSGP-SDPTQ--PAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFL 138
P+P AP SGP ++P P G S + T D FL
Sbjct: 227 PQPVVAPNSGPNANPLDLFPQGHHSTGSNAGTGNLD----------------------FL 264
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNK 198
R QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 265 RNSQQFQALRAMVQANPQILQPMLQELGKQNPYLMRLIQEHQADFLRLINEPVEGE---G 321
Query: 199 NVLG 202
NVLG
Sbjct: 322 NVLG 325
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 26 QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
++ V +K+ I+S +G++ Y A Q L+Y GK+L DD L E + ES F VVMLSK K
Sbjct: 20 EDTVADVKKNIESVQGADVYPAAQQMLVYQGKVLKDDTTLDENKVSESSFFVVMLSKSK 78
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 9/102 (8%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKP---TPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K TPAP + PT A ES + P TS
Sbjct: 72 VVVMVTKTKAGQGTPAPPE--ASPT--AAPESSTSFPPAPTS 109
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 272
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVV 151
P T G S P S S L +F + G L FLR PQFQ +R++V
Sbjct: 200 PISQTTETGGASVGAVPGVPNS-SPLNMFPQETISGAGAEIGSLDFLRNNPQFQALRSMV 258
Query: 152 QQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q NP++L VLQ++G+ NP+LL LI + F++++NEPV G
Sbjct: 259 QSNPQILQPVLQELGKQNPSLLTLIQEHHAEFLQLINEPVEG 300
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ LS+ + E F+
Sbjct: 11 SHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKVSEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKGK 78
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 100 GQESEATRP--ATATSDSMLKVF-FERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPE 156
G +E T P + + S L +F E V+ GG L FLR QFQQ+R++V NP+
Sbjct: 199 GSGAELTAPPASGGPNSSPLDLFPQEAVSDAGGGDLGTLEFLRGNDQFQQLRSMVNSNPQ 258
Query: 157 LLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
+L +LQ++G+ NP LL LI NQ F+++LNEP G + ++
Sbjct: 259 ILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDMDIF 303
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 21 SHLDVQ----EEVKQLKEKIQ-SEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ S+ Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGP 92
VVMLSK K TP+ +GP
Sbjct: 71 VVMLSKSK-TPS-SAGP 85
>gi|351700121|gb|EHB03040.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 140
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 6/83 (7%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK L EKI+SEKG + + QKLIYAGKIL+DD + EY
Sbjct: 55 VTLKTLQQQTFKIDIDPEETVKALNEKIESEKGKDAFPVAGQKLIYAGKILNDD-TVKEY 113
Query: 68 NIDESKFIVVMLSKPKP--TPAP 88
IDE F+V M++KPK TPAP
Sbjct: 114 KIDEKNFVVFMVTKPKAVTTPAP 136
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 9/102 (8%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKP---TPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K TPAP + PT A ES + P TS
Sbjct: 72 VVVMVTKTKAGQGTPAPPE--ASPT--AAPESSTSFPPAPTS 109
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
N G L LRT P FQQ+R VVQQ+P +LP +L ++GQ+NP +L+LI+ NQE F+
Sbjct: 211 NASGDTVTGALDSLRTNPIFQQLRMVVQQDPRILPELLARVGQTNPEILQLITENQEEFI 270
Query: 185 RML 187
R++
Sbjct: 271 RLM 273
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 17 QQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q T ++V++ V Q+K+ I++ K S+ A QKLI+AG+IL D Q + + I E +
Sbjct: 9 QNTEHEIEVEDNFTVLQIKQLIEA-KNSQMTASRQKLIFAGRILGDSQTVQDIGIKEGER 67
Query: 75 IVVMLSK 81
+VV++SK
Sbjct: 68 LVVLVSK 74
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 39/58 (67%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
L LR PQF +R +VQ NP LP VLQQIG +P LL LI NQ+ FV+MLNEP+
Sbjct: 219 LEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIG 276
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++ + V +K+KI+ + ++ QKLI+AGK+L DD L+EYN+ E+ F+VVM++K
Sbjct: 18 ELTDAVSAVKQKIKELQ--KFPVSQQKLIHAGKVLKDDSTLAEYNVKENDFLVVMVTK 73
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 41/59 (69%), Gaps = 5/59 (8%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL++ VR L +P
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQVRPR-----VRELRQP 281
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 69/137 (50%), Gaps = 35/137 (25%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSD 60
G+ + ++ QW + VK LKEKI++EKG + + QKLIYAGKILSD
Sbjct: 128 GLHVTSFAGVSLGQWWSNLG-------VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 180
Query: 61 DQALSEYNIDESKFIVVMLSKPK------------PT----------PAPYSGPSDPTQP 98
D + +Y IDE F+VVM++K K PT PAP SG S P P
Sbjct: 181 DVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFLPAPTSGMSHPP-P 239
Query: 99 AGQE----SEATRPATA 111
A +E SE + P T+
Sbjct: 240 AAREDKSPSEESAPTTS 256
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 350 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 409
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 40/51 (78%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
+P G E +PL+FLR QPQFQQMR ++QQN LLPT+LQ+IG+ NP LL +
Sbjct: 224 SPAGAEGVNPLSFLRNQPQFQQMRQLIQQNAALLPTLLQEIGRENPELLRV 274
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
Query: 17 QQTVSH-LDVQEEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK+LKEKI+ EKG ++ KLIYAGKILSDD+ L EY I + F
Sbjct: 10 QQTFKIEIDEEETVKRLKEKIEEEKGKDHFPVSGLKLIYAGKILSDDKPLKEYKISDKNF 69
Query: 75 IVVM 78
+VVM
Sbjct: 70 VVVM 73
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 56/99 (56%), Gaps = 15/99 (15%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F+VVM++K K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPG 60
Query: 84 --------PTPAPYSGPSDPTQPAGQESEATRPATATSD 114
PT AP S S P PA S P TA D
Sbjct: 61 TSVPPEASPTAAPESSTSFPPAPASGMSHP--PPTARED 97
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 49/62 (79%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLN
Sbjct: 202 GAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN 261
Query: 189 EP 190
EP
Sbjct: 262 EP 263
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG + QKLIY+GKIL D + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETVGQVKEKISQEKG--WDVAQQKLIYSGKILQDANTIESYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYSGPS 93
M+SKPKP P+ +G S
Sbjct: 69 CMVSKPKPAPSTSAGVS 85
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR+ P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+E + D
Sbjct: 266 LDFLRSNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIDDD 325
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 29 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 88
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 89 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 138
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 245 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 303
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 97 QPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPE 156
Q AG S A + S L +F + G L FLR PQFQ +R++VQ NP+
Sbjct: 187 QTAGMSSGAV--PVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQ 244
Query: 157 LLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+L VLQ++G+ NP LL LI + F++++NEPV G
Sbjct: 245 ILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEG 281
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K + S + QP A+ PAT S S
Sbjct: 71 VVMLSKSKTS---GSAAASSVQP------ASNPATTVSMS 101
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 272
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 29 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 88
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 89 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 124
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 245 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 303
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
Query: 97 QPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPE 156
Q AG S A + S L +F + G L FLR PQFQ +R++VQ NP+
Sbjct: 202 QTAGMSSGAV--PVGPNSSPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQ 259
Query: 157 LLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+L VLQ++G+ NP LL LI + F++++NEPV G
Sbjct: 260 ILQPVLQELGKQNPGLLRLIQEHHGEFLQLINEPVEG 296
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K + S + QP A+ PAT S S
Sbjct: 71 VVMLSKSKTS---GSAAASSVQP------ASNPATTVSMS 101
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 55/87 (63%), Gaps = 4/87 (4%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F+VVM++K K +P+
Sbjct: 55 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAKTSPS 114
Query: 88 PYSGP-SDPTQPAGQESEATRPATATS 113
P + PT A ES T P S
Sbjct: 115 SAVPPETSPT--AAPESSTTFPPAPAS 139
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/59 (62%), Positives = 46/59 (77%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ +L + IS +QE F++MLNEP
Sbjct: 259 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQETLSLPQQISRHQEQFIQMLNEP 317
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISKEKGWE--VSQLKLIYSGKILQDDKTIETYNIEEKGFIV 68
Query: 77 VMLSKPKPTPA---PYSGPSDPTQ 97
M+SKPK T A P PS P++
Sbjct: 69 CMVSKPKATSAAATPSQAPSTPSR 92
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
GE+ L FLR P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+
Sbjct: 259 GEALPNLEFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLS 318
Query: 189 E 189
E
Sbjct: 319 E 319
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 185 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 244
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
QFQQ+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 245 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 296
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
VVMLSK K + S QP + +T+PA ++
Sbjct: 71 VVMLSKSK---SGGSAGQASVQPVSATTSSTKPAAPST 105
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 185 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 244
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
QFQQ+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 245 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 296
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 18/100 (18%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K SG S AGQ S +P +AT+ S
Sbjct: 71 VVMLSKSK------SGGS-----AGQAS--VQPVSATTSS 97
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ Q ++Q D + +KEKI EKG E QKLIY+GKIL DD + Y
Sbjct: 5 FKDLKQAKFQVEAEPTDT---IGSVKEKISKEKGWE--PSTQKLIYSGKILQDDNTIESY 59
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPA 99
I+E FIV M SKPK AP S P+DP PA
Sbjct: 60 KIEEKGFIVCMTSKPK---APPSKPADPATPA 88
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 191 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 250
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
QFQQ+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 251 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 302
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K SG S Q + Q S ++P +AT+ S
Sbjct: 71 VVMLSKSK------SGGS-AGQASVQTSSVSQPVSATTSS 103
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 62/110 (56%), Gaps = 28/110 (25%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F+VVM++K K
Sbjct: 1 VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAGQG 60
Query: 84 --------PT----------PAPYSGPSDPTQPAGQE----SEATRPATA 111
PT PAP SG S P QPA +E SE + P T+
Sbjct: 61 TSAPPEASPTAAPESSTSFPPAPTSGMSHP-QPAAREDKSPSEESAPTTS 109
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 205 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 263
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 69/126 (54%), Gaps = 14/126 (11%)
Query: 83 KPTP-APYSGPSDPTQPAGQESEATRPATATSDSM----LKVFFERVNPYGGE-SEDPLA 136
+P P AP SG Q A + A PA TS L +F + + G S L
Sbjct: 204 QPLPRAPSSG-----QAAIPSATAQEPAAPTSGGANANPLDLFPQGLPTIGSTTSAGTLD 258
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRR 196
FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV GD
Sbjct: 259 FLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGD-- 316
Query: 197 NKNVLG 202
N+LG
Sbjct: 317 -GNLLG 321
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+DV+ E V+ +K I+ +G++ Y A Q LI+ GK+L D L E + E+ FIV+ML
Sbjct: 15 IDVKPEDTVEDVKNNIEIAQGADVYPASQQMLIHQGKVLKDGTTLEENKVAENSFIVIML 74
Query: 80 SKPKPTPA----PYSGPSDPTQPAGQ-ESEATRPAT 110
SK K +P+ S P QPA AT+P+T
Sbjct: 75 SKRKVSPSGGSTASSAPPSQAQPASTLPPSATQPST 110
>gi|217070100|gb|ACJ83410.1| unknown [Medicago truncatula]
gi|388522857|gb|AFK49490.1| unknown [Medicago truncatula]
Length = 142
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G L FLR PQFQ +RT+VQ NP++L VLQ++G+ NP LL LI + F++++N
Sbjct: 11 GAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPGLLRLIDEHHSEFLQLIN 70
Query: 189 EPVAG 193
EP+ G
Sbjct: 71 EPMDG 75
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 69.3 bits (168), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
+ D+ Q Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+A+ Y
Sbjct: 30 VKDLKQ---QKFVIDAEPSETVGQVKEKISKEKGWE--VPQLKLIYSGKILQDDKAIESY 84
Query: 68 NIDESKFIVVMLSKPKP---TPAPYSGPSDPTQ 97
NI+E FIV M+SKPK T P PS P++
Sbjct: 85 NIEEKGFIVCMVSKPKASSSTATPSQAPSTPSR 117
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ 141
P+P PA +G + P G+E A A + + R GE L FLR
Sbjct: 233 PQP-PAASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNN 291
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 292 PHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 339
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 215 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 274
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
QFQQ+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 275 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 326
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K SG S Q + Q S ++P +AT+ S
Sbjct: 71 VVMLSKSK------SGGS-AGQASVQTSSVSQPVSATTSS 103
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 49/62 (79%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLN
Sbjct: 254 GTGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLN 313
Query: 189 EP 190
EP
Sbjct: 314 EP 315
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
>gi|46360406|gb|AAS89023.1| RAD23 protein [Drosophila simulans]
gi|46360408|gb|AAS89024.1| RAD23 protein [Drosophila simulans]
gi|46360410|gb|AAS89025.1| RAD23 protein [Drosophila simulans]
gi|46360412|gb|AAS89026.1| RAD23 protein [Drosophila simulans]
gi|46360414|gb|AAS89027.1| RAD23 protein [Drosophila simulans]
gi|46360416|gb|AAS89028.1| RAD23 protein [Drosophila simulans]
gi|46360418|gb|AAS89029.1| RAD23 protein [Drosophila simulans]
gi|46360420|gb|AAS89030.1| RAD23 protein [Drosophila simulans]
gi|46360422|gb|AAS89031.1| RAD23 protein [Drosophila simulans]
gi|46360424|gb|AAS89032.1| RAD23 protein [Drosophila simulans]
gi|46360426|gb|AAS89033.1| RAD23 protein [Drosophila simulans]
Length = 80
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 39/47 (82%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELIS 177
+ DP FLR+QPQF QMR+++ QNP LL VLQQIGQ+NPALL+LIS
Sbjct: 33 NSDPFEFLRSQPQFLQMRSLIYQNPHLLHAVLQQIGQTNPALLQLIS 79
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 115 SMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLE 174
S L +F + G L FLR PQFQ +R++VQ NP++L VLQ++G+ NP LL
Sbjct: 218 SPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLR 277
Query: 175 LISHNQEAFVRMLNEPVAG 193
LI + F++++NEPV G
Sbjct: 278 LIQEHHGEFLQLINEPVDG 296
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKSK 78
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%)
Query: 115 SMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLE 174
S L +F + G L FLR PQFQ +R++VQ NP++L VLQ++G+ NP LL
Sbjct: 218 SPLNMFPQETISSTGAGLGSLDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPGLLR 277
Query: 175 LISHNQEAFVRMLNEPVAG 193
LI + F++++NEPV G
Sbjct: 278 LIQEHHGEFLQLINEPVDG 296
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKSK 78
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+A+ YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISKEKGWEV--PQLKLIYSGKILQDDKAIESYNIEEKGFIV 68
Query: 77 VMLSKPKP---TPAPYSGPSDPTQ 97
M+SKPK T P PS P++
Sbjct: 69 CMVSKPKASSSTATPSQAPSTPSR 92
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 1/108 (0%)
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ 141
P+P PA +G + P G+E A A + + R GE L FLR
Sbjct: 208 PQP-PAASAGGNAPATTGGEEPVNLFEAAAQAGTQEGPHGARSGSAAGEGLPNLDFLRNN 266
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 267 PHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 314
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P PA +E SE + P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFLPAPTSGMSHPP-PAAREDKSPSEESAP 130
Query: 109 ATA 111
T+
Sbjct: 131 TTS 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 40/60 (66%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
+ L LR PQF +R +VQ NP LP VLQQIG +P LL LI NQ+ FV+MLNEP+
Sbjct: 226 NSLEALRNHPQFDALRQLVQSNPAALPAVLQQIGAQSPELLRLIHQNQDRFVQMLNEPIG 285
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
++ + V +K+KI E + QKLI+AGK+L DD L+EYN+ E+ F+VVM++
Sbjct: 18 ELTDAVSAVKQKI--EGLQNFPVAQQKLIHAGKVLKDDSTLAEYNVKENDFLVVMVT 72
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 6/79 (7%)
Query: 122 ERVNPYGGES------EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
ER+N G S + LAFLR PQF +R +VQ P++L +VLQQ+GQ N L L
Sbjct: 1266 ERLNTSSGNSLMGSNNAESLAFLRNNPQFLMLRRLVQTQPQMLESVLQQLGQGNLQLATL 1325
Query: 176 ISHNQEAFVRMLNEPVAGD 194
I+ N +AF+++L+E + GD
Sbjct: 1326 INQNSDAFLQLLSEGMEGD 1344
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD 61
G + D+ Q ++ T+ ++D + + Q+KE IQ +G + ++QKLIY+GKIL D
Sbjct: 1038 GRMKLTFKDLKQQKF--TIDNVDPRCTILQVKEMIQEVQGHDL--KHQKLIYSGKILLDS 1093
Query: 62 QALSEYNIDESKFIVVMLSKPKPTPAP--------YSGPSDPTQPAGQESEATRPATATS 113
+ Y+I E FIV M+ KPK P+ + SDP A + S + P T+ S
Sbjct: 1094 NTVESYDIKEKDFIVCMVQKPKQVPSASIVAESTVSTNQSDPKASAPETSLPSVPGTSVS 1153
Query: 114 DS 115
S
Sbjct: 1154 SS 1155
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 20/110 (18%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSD 60
G+ + ++ W + VK LKEKI++EKG + + QKLIYAGKILSD
Sbjct: 106 GLHVPSFAGVSLGHWWSNLG-------VKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSD 158
Query: 61 DQALSEYNIDESKFIVVMLSKPK------------PTPAPYSGPSDPTQP 98
D + +Y IDE F+VVM++K K PT AP S S P P
Sbjct: 159 DVPIRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 208
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 329 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 387
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 11/123 (8%)
Query: 77 VMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYG-GESE-DP 134
V +S+ P P P+ PT T PA + + L +F + + G G +E
Sbjct: 202 VPVSEQAPAAQPRQQPAQPT---------TVPAGGPNANPLDLFPQGLPNIGSGAAEAGT 252
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q+ F+R++NEPV G
Sbjct: 253 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLINEPVEGG 312
Query: 195 RRN 197
N
Sbjct: 313 EGN 315
Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 27 EEVKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
+ V +K+ I++ +G S Y AE Q LIY GK+L DD L E + E+ F+V+MLSK K
Sbjct: 21 DTVADVKKNIETAQGASVYPAEQQMLIYQGKVLKDDTTLGENKVAENSFVVIMLSKAK 78
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQ 143
PTP SG S T G E A A + + R GGE+ L FLR P
Sbjct: 210 PTPQAPSGESGLTTAGGDEPVNLFEAAAQAGTQDTG---RAGRSGGEALPNLDFLRHNPH 266
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
FQQ+R +VQQNP++L +LQQ+ NP + LI N+E F+++L+E
Sbjct: 267 FQQLRQLVQQNPQMLEPILQQLASGNPQIAALIGQNEEQFLQLLSE 312
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK--- 83
E V Q+KE+I KG E KLIY+GKIL D+ + Y ++E FIV M+SKPK
Sbjct: 21 ETVGQVKERICQLKGWE--VPQLKLIYSGKILKDENTIESYKVEEKGFIVYMVSKPKTSS 78
Query: 84 PTPAPYSGPSDPTQ 97
+ AP GPS P++
Sbjct: 79 SSAAPSQGPSTPSR 92
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ +E VK LKEKI++EKG + + QKLIYAGKIL+DD + +Y IDE F
Sbjct: 12 QQTFKIRMEPEETVKVLKEKIEAEKGQDAFPVAGQKLIYAGKILNDDTPIRDYKIDEKNF 71
Query: 75 IVVMLSKPK--------PTPAPYSGPS 93
+VVM++K K P AP S PS
Sbjct: 72 VVVMVTKTKSGLGTSVPPETAPASEPS 98
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 226 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPHLLQQISLHQEQFIQMLNEP 284
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 67/123 (54%), Gaps = 29/123 (23%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PT----------PAPYSGPSDPTQPAGQE----SEATRP 108
+VVM++K K PT PAP SG S P PA +E SE + P
Sbjct: 72 VVVMVTKAKAGQGTSAPLEASPTAASETSTTFLPAPASGMSHPP-PAAREDKSPSEESVP 130
Query: 109 ATA 111
T+
Sbjct: 131 TTS 133
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 22 HLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
HL++ EE + ++K + SE+G +Y E QKLIY GKIL D + E D SKF+VVML
Sbjct: 16 HLELNEEQTIAEVKALVASERGDDYAPELQKLIYNGKILDDATKVGEVGFDSSKFVVVML 75
Query: 80 SKPKPTPAPYSGPSDPTQPAGQES 103
+K K T A + + + P QE+
Sbjct: 76 AKKKVTAAEPASTATSSAPVVQEN 99
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
++ D L L PQ ++R ++QQNPE+L VLQQ+ NP L++ I +NQ+AF+ +LN
Sbjct: 191 DANDDLNMLANMPQLGEIRNMIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILN 249
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 6/98 (6%)
Query: 22 HLDVQEEVKQLKEKIQSEKGS-EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LD + ++K KI EKG EY E QKLIY GK+L D Q + E ID SKF+VVM++
Sbjct: 16 ELDPHLTIGEVKAKIAEEKGEVEYPTECQKLIYNGKVLDDAQTVEEVMIDPSKFVVVMIA 75
Query: 81 KPKPTPAPYSG---PSDPTQPAGQESEATRPATATSDS 115
+ KP AP PS+ PAG ++AT + +DS
Sbjct: 76 RKKPIGAPVESTPQPSNLQIPAG--AQATTAPVSVADS 111
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G + PL FLR+ PQF +R ++Q P+ L +L+QIGQ +P +L I NQ+ FVR++N
Sbjct: 238 GGTGGPLDFLRSDPQFAMLRGIIQARPQFLQPLLEQIGQQHPEVLRAIQENQDEFVRLIN 297
Query: 189 EPV 191
EPV
Sbjct: 298 EPV 300
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 18 QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVV 77
QT + + LK KI+ + S K+I+ G++L D + +SEY + + V+
Sbjct: 12 QTEMEFEPTNTLADLKTKIEGQM-SSLGGPVNKIIHMGRVLEDGKPISEYGVADGNTFVI 70
Query: 78 MLSKPKPT--PAPYSGPSDPTQP 98
M+SK KP P P S P+ P
Sbjct: 71 MVSKKKPAQEPQPSSEPAPSAAP 93
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E + LK KI+SEKG E QKLIY+GKIL DD + Y I+E FIV M SKPK
Sbjct: 21 ETIGTLKSKIESEKGWE--TSTQKLIYSGKILQDDNTIESYKIEEKGFIVCMTSKPK--- 75
Query: 87 APYSGPSDPTQPA 99
AP + P++P PA
Sbjct: 76 APPTKPAEPATPA 88
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR PQFQQ+R VVQQ P +L +LQQ+ +P L ++I+ N E F+++L E
Sbjct: 272 LDFLRNNPQFQQLRQVVQQQPGMLEPILQQVAAGSPQLAQIITQNPEQFMQLLAE 326
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGISAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum
CS3096]
Length = 242
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 4/65 (6%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LDV+ E + +KEKI +EKG + + QKLIY+GKIL DD+ + YNI+E F+V M++
Sbjct: 15 LDVEPSELISAVKEKISAEKG--WQPQLQKLIYSGKILKDDETVGSYNIEEKGFVVCMVN 72
Query: 81 KPKPT 85
KPKPT
Sbjct: 73 KPKPT 77
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 56/97 (57%), Gaps = 14/97 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPA 99
+VVM++K K T AP S S P PA
Sbjct: 72 VVVMVTKAKNSSGTSVPPEASSTAAPESSTSFPLAPA 108
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>gi|195564270|ref|XP_002105746.1| Rad23 [Drosophila simulans]
gi|194201619|gb|EDX15195.1| Rad23 [Drosophila simulans]
Length = 110
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 64/104 (61%), Gaps = 11/104 (10%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+G EY+++ QKLIYAG IL+DD + YN+DE
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFDERGPEYVSKKQKLIYAGFILTDDPPVGSYNVDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
KFIVVML++ S S+ Q + +ES+ T+T DS
Sbjct: 66 KKFIVVMLTRD-------SSSSNRNQLSVKESDK---LTSTDDS 99
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 467
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 2/73 (2%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
I QQ +++++ V+ LK++I+ +G ++ A QKLIYAGKILSDD LS YN
Sbjct: 3 IVLKTLQQQTFRVEIEDSATVRNLKDEIEKTQGKDFPASGQKLIYAGKILSDDNPLSSYN 62
Query: 69 IDESKFIVVMLSK 81
IDE F+VVM++K
Sbjct: 63 IDEKSFVVVMVTK 75
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GGES L FL PQFQQ+R + +P +L LQ +GQSNP LL++IS QE F+ ++
Sbjct: 289 GGESSPSLEFLDQLPQFQQLREAISSDPAMLSQFLQSLGQSNPQLLQIISQRQEEFIALI 348
Query: 188 NE 189
N+
Sbjct: 349 NQ 350
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 82 PKPTPAPYSGPSDPTQPAGQESE--ATRPATATSDSMLKVFFERVNPYGGES-EDPLAFL 138
P T P SG PT P Q + A P + + + L +F + + G + L FL
Sbjct: 254 PPVTRPPASG-GQPTNPPAQSQQQPAVAPTSGPNANPLDLFPQGLPNVGSNTGAGTLDFL 312
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
R QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G
Sbjct: 313 RNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEG 367
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
D +VK+ E +QS Y A Q LI+ GK+L D+ + E + E+ FIV+MLSK K
Sbjct: 21 DTVADVKKNIETVQSP--DVYPAAQQMLIHQGKVLKDETTMEENKVAENSFIVIMLSKSK 78
Query: 84 P 84
P
Sbjct: 79 P 79
>gi|168057528|ref|XP_001780766.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667784|gb|EDQ54405.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 396
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 41/52 (78%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
FLR PQFQ +RT+VQ NP++L +LQ++G+ NPALL LI+ NQ F+R++N
Sbjct: 271 FLRNNPQFQALRTMVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLIN 322
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
H+ E V +K KI+ +G + + Q LI+ GK+L D+ +++ + E+ F+VVML+
Sbjct: 16 HVAEDELVSSVKRKIEELQGKDAFPCAQQLLIHQGKVLKDETTMADNKVAENGFLVVMLT 75
Query: 81 KPK 83
K +
Sbjct: 76 KVR 78
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LA LR P F +RT V Q P L +LQQ+G+SNP L+++I+ NQ+ F+RML EPV GD
Sbjct: 239 LAALRDNPAFAMLRTAVAQEPRSLVPMLQQLGRSNPELVQVINQNQQEFLRMLTEPVEGD 298
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E + +K KI +EKG E A+ QKLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETIADVKAKISAEKGWE--ADKQKLIYSGKILQDDKTVESYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
M+ KPKP PA + + P+ PA + ++A+ P+ S
Sbjct: 69 CMIQKPKPQPAASASKAAPSTPAREPAQASTPSAPAQSS 107
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR PQFQQ+R +VQQ P +L +LQQ+GQ NP L +LI+ + E F+ +L+E
Sbjct: 264 LDFLRNNPQFQQLRQLVQQQPHMLEPILQQVGQGNPQLAQLIADHPEQFLSLLSE 318
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Gallus
gallus]
Length = 214
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 50/65 (76%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++ML
Sbjct: 79 GQPGENPLEFLREQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISQHQEQFIQML 138
Query: 188 NEPVA 192
NEP+
Sbjct: 139 NEPLG 143
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR PQFQ +R +V+ NP++L +LQ++G+ NP L+ LI +Q F+R++
Sbjct: 286 GAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLI 345
Query: 188 NEPVAGDRRNKNVLG 202
NEP+ G+ N+LG
Sbjct: 346 NEPLEGE---GNILG 357
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 SHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLEENKVAENSFI 70
Query: 76 VVMLSKPK 83
V+ML+K K
Sbjct: 71 VIMLTKNK 78
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR PQFQ +R +V+ NP++L +LQ++G+ NP L+ LI +Q F+R++
Sbjct: 286 GAVGSGSLDFLRNSPQFQALRAMVRANPQILQPMLQELGKQNPQLIRLIQDHQPDFLRLI 345
Query: 188 NEPVAGDRRNKNVLG 202
NEP+ G+ N+LG
Sbjct: 346 NEPLEGE---GNILG 357
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 SHFEIEVQPADTVADVKKNIETVQGADVYPAAQQMLIHQGKVLKDSSTLEENKVAENSFI 70
Query: 76 VVMLSKPK 83
V+ML+K K
Sbjct: 71 VIMLTKNK 78
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQP 142
P AP SG + P Q S+ P+ + + L +F + + G L FL P
Sbjct: 208 PPAAPASGQA--VNPPVQASQPAVPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSP 265
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 266 QFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGE 317
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I++ +G + Y A Q LI GK+L D L E + E+ F+
Sbjct: 11 THFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIPPGKVLKDPTTLEENKVAENSFV 70
Query: 76 VVMLSKPK----PTPAPYSGPSDPTQPA---GQESEATRP-ATATS 113
V+MLSK K T A PS+ QPA GQ ++ P ATA S
Sbjct: 71 VIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAAS 116
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQSMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVSGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK 83
+VVM++K K
Sbjct: 72 VVVMVTKGK 80
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 63/103 (61%), Gaps = 11/103 (10%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T +Q LD+QE+ V +K+KI++E+GSE+ A QKLI++GK++ D ++L +Y
Sbjct: 3 VTFKTLKQQTFVLDLQEDDLVGDVKKKIEAERGSEFDASTQKLIHSGKVMEDSKSLKDYK 62
Query: 69 IDESKFIVVM-LSKPKPTPAPYSGPSDPTQPAGQESEATRPAT 110
+ +S F+VVM +SK PA S P PAG+ RP T
Sbjct: 63 VTDSGFVVVMSVSK----PAKEGSASAPGNPAGE----GRPTT 97
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 56/95 (58%), Gaps = 16/95 (16%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQ 97
+VVM++K K PT AP PS P Q
Sbjct: 72 VVVMVTKAKAGQSTLAPPEVSPTAAPE--PSTPFQ 104
>gi|326427438|gb|EGD73008.1| hypothetical protein PTSG_04717 [Salpingoeca sp. ATCC 50818]
Length = 127
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+P+AFL P F Q+R +V QNP LP++LQ + SNP L++LI+ NQE F ++N P
Sbjct: 6 ENPIAFLHIDPAFNQLRRLVHQNPAHLPSLLQHLASSNPDLVQLINDNQEDFYHLINAP 64
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 38/62 (61%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GG S L LR PQF R VV+ NP LP +LQQIG NP LL LI NQ F++ML
Sbjct: 199 GGPSAGSLEQLRNHPQFASFREVVRTNPAALPALLQQIGGQNPELLRLIHENQSQFLQML 258
Query: 188 NE 189
NE
Sbjct: 259 NE 260
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 45/68 (66%), Gaps = 2/68 (2%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +K KIQ + E+ A QKLI+AGKIL DD ALSEYNI E+ FIVVM+SK K +
Sbjct: 23 VAVVKTKIQETQ--EFPAIQQKLIHAGKILKDDTALSEYNIKENDFIVVMVSKAKGSRPT 80
Query: 89 YSGPSDPT 96
+ PS T
Sbjct: 81 SALPSTAT 88
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++
Sbjct: 260 GAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLI 319
Query: 188 NEPVAGDRRNKNVLG 202
NEPV G N+LG
Sbjct: 320 NEPVEGGE--GNILG 332
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + ++K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFI 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKTK 78
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSM-LKVFFERV-NPYGGESEDPLAFLRTQ 141
P P P S P DP Q A +PA A ++ L +F + + N + L LR
Sbjct: 201 PAPPPSSQPVDPVQ-------AVQPAQAGPNANPLDLFPQSLPNDSANANTGNLDVLRNN 253
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
QFQ + +VQ NP++L +LQ++ + NP +++LI NQ F+R+++EP+ GD N+ +L
Sbjct: 254 SQFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMML 313
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V D +VK++ E IQ + + Y A+ Q LI+ GK+L DD L E + E+ F+V+ML
Sbjct: 17 VDPTDKVADVKKVIESIQEQ--ASYPADQQVLIHQGKVLKDDTTLEENQVVENNFLVIML 74
Query: 80 SKPK 83
+ K
Sbjct: 75 RQNK 78
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
S L FL PQF MR ++Q NP +L +LQ++ Q+NP+LL+LI NQ+ FVR+LNEP
Sbjct: 264 STGSLDFLTRIPQFNVMRRLIQANPRILQPMLQELAQANPSLLDLIHQNQQEFVRLLNEP 323
Query: 191 V 191
Sbjct: 324 T 324
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD-DQALSEYNIDESKFIVVMLSKPKPTPA 87
V ++K K+ + +G E A +LI++GK+LS+ ++ L + N+ E F+VVM PK T
Sbjct: 23 VAEVKRKVAAVQGFEQDALSCRLIFSGKVLSNENEKLQDLNVKEDSFLVVM--PPKKTYQ 80
Query: 88 PYSG-PSDPTQPAGQESEATRPATATSDSM 116
G S T G+E+E TR TS+S+
Sbjct: 81 KTMGQSSSKTDAQGKEAETTRQKETTSESV 110
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 48/64 (75%), Gaps = 4/64 (6%)
Query: 22 HLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
H+DV+ + V +K+KIQ+ +G + AE QKLIY+GKIL+D++ + EY I E F+VVM+
Sbjct: 14 HIDVEPSDSVGSVKQKIQASQG--HPAENQKLIYSGKILADEKNMGEYEIKEKDFLVVMV 71
Query: 80 SKPK 83
SKPK
Sbjct: 72 SKPK 75
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q+RT+++QNP L ++Q + QSNP L E +S + E +RML
Sbjct: 297 LSQLRTLLEQNPAALQPLVQALVQSNPQLAEAMSADPEGVLRML 340
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 260 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGE 319
Query: 195 RRNKNVLG 202
NVLG
Sbjct: 320 ---GNVLG 324
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
V ++K+ I++ +G++ Y A Q LIY GK+L DD L E + E+ FIVVMLSK K +
Sbjct: 24 VVEVKKNIENVQGADVYPAAQQMLIYQGKVLKDDTTLDESKVAENSFIVVMLSKSKVS-- 81
Query: 88 PYSGPSDPTQPAGQESEATRPATATS 113
GPS T A + P+TAT+
Sbjct: 82 -SGGPSTATA-APPNVSSGGPSTATA 105
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 87 APYSGPSDPTQPAGQESEATRPATATSD----SMLKVFFERVNPYG--GESEDPLAFLRT 140
AP S + PT P + +PA TS + L +F + + G L FLR
Sbjct: 203 APVS--AQPTNPPADAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRN 260
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNV 200
QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEP G N+
Sbjct: 261 SQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGE--GNI 318
Query: 201 LG 202
LG
Sbjct: 319 LG 320
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 21 SHLDV----QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++ Q+ V ++K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLEENKVAENTFI 70
Query: 76 VVMLSKPKPTPA 87
V+MLSK PA
Sbjct: 71 VIMLSKTSTVPA 82
>gi|440791110|gb|ELR12364.1| UBA/TSN domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 305
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 56/219 (25%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK------- 81
+ LK +IQ++ ++ +QK+I+AG+I+SD+ L+E I + +V++ ++
Sbjct: 24 CEDLKRQIQTDH--QFDVSWQKVIFAGRIVSDEARLAEQGIKDGASLVLVTAQRLLPLPH 81
Query: 82 ------------------PK----PTPAPYSGPSDPTQPAGQESE----ATRPATATSDS 115
PK P P P G E E A R A +
Sbjct: 82 PRLLPPLPLNQLLLSPHLPKHNLLPRP-PLLQMLLRLLGMGFEQEQIVRALRLARNDLQN 140
Query: 116 MLKVFF---ERVNP--------------YGGESEDPLA---FLRTQPQFQQMRTVVQQNP 155
+ +R +P G ++ DP A ++ QPQFQ++R+++Q P
Sbjct: 141 ACDLLLSGAQRTDPQQEASNLMSDLIQRMGQQNSDPQAQFEWVVQQPQFQRIRSLLQTRP 200
Query: 156 ELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
+L +L Q+G SNP L ELIS NQ F+ LN+ GD
Sbjct: 201 DLFAALLTQLGGSNPQLHELISQNQAEFLEWLNDEEGGD 239
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++
Sbjct: 250 GAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLI 309
Query: 188 NEPVAGDRRNKNVLG 202
NEPV G N+LG
Sbjct: 310 NEPVEGGE--GNILG 322
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + ++K+ I++ +G++ Y A Q LI+ GK+L D L E + ES FI
Sbjct: 11 THFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAESSFI 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPA 99
V+MLSKP TP S + P PA
Sbjct: 71 VIMLSKPSATPTSTSVSTAPQAPA 94
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++
Sbjct: 268 GAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLI 327
Query: 188 NEPVAGDRRNKNVLG 202
NEPV G N+LG
Sbjct: 328 NEPVEGGE--GNILG 340
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + ++K+ I++ +G++ Y A Q LI+ GK+L D L E + ES FI
Sbjct: 11 THFEIEVNPSDTLSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAESSFI 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKTK 78
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 63 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 122
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQP 142
P AP SG + P Q S P+ + + L +F + + G L FL P
Sbjct: 210 PPAAPVSGQA--VNPPVQASPPAVPSGGPNANPLDLFPQGLPNVGSNVGAGNLDFLSNSP 267
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 268 QFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEGE 319
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 13/106 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I++ +G + Y A Q LI+ K+L D L E + E+ F+
Sbjct: 11 THFEIEVKPEDTVADVKKSIETVQGQDVYPAAQQMLIHQVKVLKDPTTLDENKVAENSFV 70
Query: 76 VVMLSKPK----PTPAPYSGPSDPTQPA---GQESEATRP-ATATS 113
V+MLSK K T A PS+ QPA GQ ++ P ATA S
Sbjct: 71 VIMLSKNKVSTSGTSATQPAPSNSAQPATSTGQPTQTVAPQATAAS 116
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 87 APYSGPSDPTQPAGQESEATRPATATSD----SMLKVFFERVNPYG--GESEDPLAFLRT 140
AP S + PT P + +PA TS + L +F + + G L FLR
Sbjct: 224 APVS--AQPTNPPADAPQTAQPAAVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRN 281
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNV 200
QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEP G N+
Sbjct: 282 SQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGGE--GNI 339
Query: 201 LG 202
LG
Sbjct: 340 LG 341
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 21 SHLDV----QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++ Q+ V ++K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDATTLEENKVAENTFI 70
Query: 76 VVMLSKPKPT 85
V+MLSK K T
Sbjct: 71 VIMLSKSKST 80
>gi|55669980|pdb|1TP4|A Chain A, Solution Structure Of The Xpc Binding Domain Of Hhr23a
Protein
Length = 97
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 8 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 67
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+E L LR +P F+Q+RT+VQQNP LL LQQ+ Q+NP LL +I NQEAF++ L E
Sbjct: 306 TEAGLDALRREPAFEQLRTLVQQNPALLQPFLQQLAQTNPRLLGIIQQNQEAFLQFLGEG 365
Query: 191 VAGD 194
G+
Sbjct: 366 AEGE 369
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 53/80 (66%), Gaps = 4/80 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T QQ L+++ + + LK+KI+S++G + QK+I++GK+L+DD+ + + N
Sbjct: 33 VTLKNLQQKTFTLELEPSQTILDLKQKIESDQG--HAVALQKIIFSGKVLADDKTIGDCN 90
Query: 69 IDESKFIVVMLSKPKPTPAP 88
I E F+V+M++KPK + AP
Sbjct: 91 IKEKDFMVLMVNKPKASAAP 110
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E + QLKE+I E+G + QKLIY+GKIL D+ + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETIGQLKERISQERG--WDVALQKLIYSGKILQDENTIESYNIEEKGFIV 68
Query: 77 VMLSKPK-PTPAPYS--GPSDPT 96
M++KPK TPA S PS PT
Sbjct: 69 CMVTKPKTTTPAATSSQAPSTPT 91
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+E + D
Sbjct: 259 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 318
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces
stipitatus ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces
stipitatus ATCC 10500]
Length = 375
Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
E V Q+KEKI EKG E A QKLIY+GKIL D + YNI+E FIV M+SKPKP
Sbjct: 21 ETVGQVKEKIAREKGWE--ASQQKLIYSGKILQDANTIESYNIEEKGFIVCMVSKPKPA 77
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L E
Sbjct: 255 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAE 309
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 379
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E + QLKE+I E+G + QKLIY+GKIL D+ + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETIGQLKERISQERG--WDVALQKLIYSGKILQDENTIESYNIEEKGFIV 68
Query: 77 VMLSKPK-PTPAPYS--GPSDPT 96
M++KPK TPA S PS PT
Sbjct: 69 CMVTKPKTTTPAATSSQAPSTPT 91
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+E + D
Sbjct: 259 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLSEDIEDD 318
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSM-LKVFFERV-NPYGGESEDPLAFLRTQ 141
P P P S P DP Q A +PA A ++ L +F + + N + L LR
Sbjct: 205 PAPPPSSQPVDPVQ-------AVQPAQAGPNANPLDLFPQSLPNDSANANTGNLDVLRNN 257
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
QFQ + +VQ NP++L +LQ++ + NP +++LI NQ F+R+++EP+ GD N+ +L
Sbjct: 258 SQFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMML 317
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V D +VK++ E IQ + + Y A+ Q LI+ GK+L DD L E + E+ F+V+ML
Sbjct: 17 VDPTDKVADVKKVIESIQEQ--ASYPADQQVLIHQGKVLKDDTTLEENQVVENNFLVIML 74
Query: 80 SKPKPTPAPYSGPSDPT---QPAGQESEATRPATATS 113
+ K + + + P+ T P+ Q AT P T+ +
Sbjct: 75 RQNKGSSS--AAPAKVTANQAPSTQTVPATPPQTSAA 109
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 65/116 (56%), Gaps = 12/116 (10%)
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERV-----NPYGGESEDPLAFLRTQPQFQQ 146
P +P PA A P++ + + L +F + + P G S D FLR QFQ
Sbjct: 58 PGNP--PAAAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLD---FLRNSQQFQA 112
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
+R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G N+LG
Sbjct: 113 LRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGE--GNILG 166
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 45/226 (19%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q T++ ++ ++VK LK+ + + AE +LIY+G+I+ D LSEYNI E + I
Sbjct: 10 QHTITLEMNESQDVKTLKQILGNLPEVSLPAENVQLIYSGRIMEDAMPLSEYNIAEGRII 69
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATR---PATATSD-----------------S 115
V+M K P S PT P E T+ P+ A ++ S
Sbjct: 70 VLMGKKKADVSLPEEQVS-PTIPLAAEPMRTQDVTPSMAPNEQWVCDLMSMGYGEQEVRS 128
Query: 116 MLKVFF---ERVNPY-------------------GGESEDPLAFLRTQPQFQQMRTVVQQ 153
L+ F ER Y G+S + L L P+ Q+R ++++
Sbjct: 129 ALRASFNHPERAIEYLINGIPQEASPEHELAEIPSGQSTEQLQHLMGDPRLTQVREMIRE 188
Query: 154 NPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKN 199
NPEL+ +L+++ ++PA E + +QE + ML VAG + N
Sbjct: 189 NPELMQLILERLADTDPAAFEDVHRDQEGLMTMLA-GVAGSVGDAN 233
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 155 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 213
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces
marneffei ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces
marneffei ATCC 18224]
Length = 372
Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
E V Q+KEKI EKG E A QKLIY+GKIL D + YNI+E FIV M+SKPKP
Sbjct: 21 ETVGQVKEKIAQEKGWE--ASQQKLIYSGKILQDANTIESYNIEEKGFIVCMVSKPKPA 77
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L E +
Sbjct: 252 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLAEDLG 309
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISKEKGWE--VPQLKLIYSGKILQDDKTIESYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYS--GPSDPTQ 97
M+SKPK T + S PS P++
Sbjct: 69 CMVSKPKATSSGTSSQAPSTPSR 91
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 249 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 303
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSM-LKVFFERV-NPYGGESEDPLAFLRTQ 141
P P P S P DP Q A +PA A ++ L +F + + N + L LR
Sbjct: 205 PAPPPSSQPVDPVQ-------AVQPAQAGPNANPLDLFPQSLPNDSANANTGNLDVLRNN 257
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
QFQ + +VQ NP++L +LQ++ + NP +++LI NQ F+R+++EP+ GD N+ +L
Sbjct: 258 SQFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMML 317
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V D +VK++ E IQ + + Y A+ Q LI+ GK+L DD L E + E+ F+V+ML
Sbjct: 17 VDPTDKVADVKKVIESIQEQ--ASYPADQQVLIHQGKVLKDDTTLEENQVVENNFLVIML 74
Query: 80 SKPKPTPAPYSGPSDPT---QPAGQESEATRPATATS 113
+ K + + + P+ T P+ Q AT P T+ +
Sbjct: 75 RQNKGSSS--AAPAKVTANQAPSTQTVPATPPQTSAA 109
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
FLR PQFQ +R++VQ NP++L +LQ++G+ NP LL LI +Q F++++NEP+ G
Sbjct: 263 FLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEG 319
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQEE-VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILS 59
G L ISDI N + S++ V +K+ I++ +G + Y Q LI+ GK+L
Sbjct: 7 GKLGLGISDIICNLCAKLSSNIQTNWYLVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLK 66
Query: 60 DDQALSEYNIDESKFIVVMLSKPK 83
D+ L+E I E F+VVMLSK K
Sbjct: 67 DETTLTENKITEDGFLVVMLSKSK 90
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus
fumigatus Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus
fumigatus A1163]
Length = 376
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 5/84 (5%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETVGQVKEKISKEKGWE--VPQLKLIYSGKILQDDKTIETYNIEEKGFIV 68
Query: 77 VMLSKPK-PTPA--PYSGPSDPTQ 97
M+SKPK P+ A P PS P++
Sbjct: 69 CMVSKPKAPSSAATPSQAPSTPSR 92
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 258 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 312
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 48/60 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
++PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 114 GDNPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 173
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q+ F+R++
Sbjct: 203 GAGGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQDDFLRLI 262
Query: 188 NEPVAGDRRNKNVLG 202
NEPV + NVLG
Sbjct: 263 NEPV--ESGEGNVLG 275
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 26 QEEVKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
++ V +K+KI++ +G + Y AE Q LI+ K+L D+ L E I E+ F+V+MLSK +
Sbjct: 20 EDTVADVKKKIETAQGVAVYPAEQQMLIHQAKVLKDNTTLDENKIVENSFVVIMLSKVR 78
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 61/227 (26%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML--- 79
+D + V LK+++ S G + +LIY G+I+ D+ LSEY I E KF+V+M
Sbjct: 17 MDEGQNVLALKKRLVSMPGISQSVDSLQLIYGGRIMEDELPLSEYKIAEDKFLVLMGKQK 76
Query: 80 ----------SKPKPTPAPYSGP-SDPTQPAGQESEATRPATATSD-------------- 114
KPK T + +G S P+ G ES AT TS
Sbjct: 77 VQQVTKVELEKKPKETASAATGTGSTPSGDTGAESYATGGGNPTSSVAPNEEMVQRLMGM 136
Query: 115 --------SMLKVFFER-------------------------VNPYGGESEDPLAFLRTQ 141
+ L F V+P E LA L +
Sbjct: 137 GYEEMPVRAALSASFNHPELAIEYLIAQIPSEAASGTASPVCVSPSVAEMAVNLAPLMSD 196
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
P+F Q+R ++ QNP+ L +L Q+ SNP + E + ++ FV +LN
Sbjct: 197 PRFAQLREMILQNPDQLEAILGQMSGSNPEVFEGLRNHHGEFVDLLN 243
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG E KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISKEKGWE--VPQLKLIYSGKILQDDKTIESYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYS--GPSDPTQ 97
M+SKPK T + S PS P++
Sbjct: 69 CMVSKPKATSSGTSSQAPSTPSR 91
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 249 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 303
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
FLR PQFQ +RT+VQ NP++L +LQ++ + NP L+ LI +Q F+R++NEPV G
Sbjct: 280 FLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQADFLRLVNEPVEG 336
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H D++ + V +K++I+ +G++ Y +E Q LIY GK+L D+ + E + E+ F+
Sbjct: 11 NHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIEENKVTENTFL 70
Query: 76 VVMLSKPKPTPAPYS 90
VVMLSK K T A S
Sbjct: 71 VVMLSKTKATTAGTS 85
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
FLR PQFQ +R++VQ NP++L +LQ++G+ NP LL LI +Q F++++NEP+ G
Sbjct: 251 FLRNNPQFQALRSMVQANPQILQAMLQELGKQNPQLLRLIQDHQAEFLQLINEPLEG 307
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH ++ + V +K+ I++ +G + Y Q LI+ GK+L D+ L+E I E F+
Sbjct: 11 SHFQIEVQPTDTVLGVKKNIENVQGKDSYPCSQQLLIHNGKVLKDETTLTENKITEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKSK 78
>gi|311771876|pdb|2WYQ|A Chain A, The Crystal Structure Of The Ubiquitin-Like (Ubl) Domain
Of Hhr23a (Human Homologue A Of Rad23)
Length = 85
Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ + ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y
Sbjct: 8 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 67
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++K K
Sbjct: 68 RIDEKNFVVVMVTKTK 83
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 65.9 bits (159), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSM-LKVFFERV-NPYGGESEDPLAFLRTQ 141
P P P S P DP Q A +PA A ++ L +F + + N + L LR
Sbjct: 40 PAPPPSSQPVDPVQ-------AVQPAQAGPNANPLDLFPQSLPNDSANANTGNLDVLRNN 92
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
QFQ + +VQ NP++L +LQ++ + NP +++LI NQ F+R+++EP+ GD N+ +L
Sbjct: 93 SQFQNLLGLVQANPQILQPLLQELRKQNPRVMQLIQENQAEFMRLISEPLEGDEENEMML 152
>gi|327493261|gb|AEA86337.1| putative DNA repair protein [Solanum nigrum]
Length = 166
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G
Sbjct: 67 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGG 126
Query: 195 RRNKNVLG 202
NVLG
Sbjct: 127 -EGTNVLG 133
>gi|355715049|gb|AES05208.1| RAD23-like protein A [Mustela putorius furo]
Length = 102
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 1 GENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 60
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 191 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 250
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q +Q+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 251 DQLEQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 302
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K SG S Q + Q S ++P +AT+ S
Sbjct: 71 VVMLSKSK------SGGS-AGQASVQTSSVSQPVSATTSS 103
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 185 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 244
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q +Q+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 245 DQLEQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 296
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 8/98 (8%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
VVMLSK K + S QP + +T+PA ++
Sbjct: 71 VVMLSKSK---SGGSAGQASVQPVSATTSSTKPAAPST 105
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
LA LR+ P F Q+R++VQQNP LL LQQ+G SNP LL LI NQ+AFV L E
Sbjct: 268 LAALRSNPVFGQLRSLVQQNPALLQPFLQQLGASNPELLSLIERNQQAFVEYLQE 322
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
E V LK+KIQ+++G + AE QK+I++GKIL D++ + E N E F VVM+
Sbjct: 22 ETVADLKKKIQADQG--FPAESQKIIFSGKILPDEKTVGEANFKEKDFCVVMV 72
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR QFQ + +VQ NP++L +LQ++G+ NP +++LI NQ F+RM+NEP+ GD
Sbjct: 230 LDVLRNNVQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGD 289
Query: 195 RRNKNVL 201
N+ +L
Sbjct: 290 EENEMML 296
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESED- 133
+ V S P + A G +D ++AT P+ + + L +F + + G +
Sbjct: 207 VPVARSPPSNSGAAGQGTNDVVAAESDLAQATVPSGGPNAAPLNLFPQGLPNLGATAGGG 266
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR PQFQ +RT+VQ NP++L +LQ++ + NP L+ LI +Q F+ ++NE G
Sbjct: 267 ALDFLRNNPQFQALRTMVQANPQILQPMLQELSKQNPQLMRLIQDHQAEFLHLINEETEG 326
Query: 194 D 194
D
Sbjct: 327 D 327
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 62/144 (43%), Gaps = 23/144 (15%)
Query: 27 EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK-- 83
+ V +K++I+ +G + Y Q LI+ GK+L DD + + I E+ F+VVML+K K
Sbjct: 21 DTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIEDNQITENGFLVVMLTKTKTS 80
Query: 84 -------------------PTP-APYSGPSDPTQPAGQESEATRPATATSDSMLKVFFER 123
TP AP S P + P + A PAT+ S
Sbjct: 81 SAAGASSTSSASTIQHTQTSTPLAPASNPVEAASPVVSQPPAVAPATSVSAPETTAVQAN 140
Query: 124 VNPYGGESEDPLAFLRTQPQFQQM 147
+PYG + +A + QQM
Sbjct: 141 ADPYGEAASILVAGSNLEQTIQQM 164
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR QFQ + +VQ NP++L +LQ++G+ NP +++LI NQ F+RM+NEP+ GD
Sbjct: 255 LDVLRNNVQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGD 314
Query: 195 RRNKNVL 201
N+ +L
Sbjct: 315 EENEMML 321
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 16 WQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+Q V D VK++ E +Q + + Y A+ Q LI+ GK+LSDD L E + E+ F+
Sbjct: 13 FQIEVEPTDKVAAVKKVIENMQEQ--ASYPADQQVLIHQGKVLSDDTTLEENQVTENNFL 70
Query: 76 VVMLSKPK 83
V+ML + K
Sbjct: 71 VIMLRQNK 78
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 123 RVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEA 182
R P GG L FLR QFQ +RT+VQQNP+LL +LQ++G+ NP LL LI+ N
Sbjct: 228 RTPPAGGGGNGALDFLRNNAQFQALRTMVQQNPQLLQPMLQELGRQNPQLLRLINENHVE 287
Query: 183 FVRMLNE-----PVAGD 194
F+R+++E P AGD
Sbjct: 288 FLRLISEAGGENPEAGD 304
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
LDVQ + V +K++I+ +G E + Q LI+ GK+L D+ + E + E+ F+VVML
Sbjct: 15 LDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMDENKVSENGFLVVML 74
Query: 80 SKPKPTPAPYSGPSDPT 96
+K K T AP S + P+
Sbjct: 75 TKSK-TAAPTSSGATPS 90
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++
Sbjct: 275 GAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLI 334
Query: 188 NEPVAGDRRNKNVLG 202
NEP G N+LG
Sbjct: 335 NEPAEGAE--GNILG 347
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 21 SHLDV----QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++ Q+ V ++K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLEENKVVENTFI 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKSK 78
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE----- 189
L FLR QFQ +RT+VQQNP+LL +LQ++G+ NP LL LI+ N F+R+++E
Sbjct: 258 LDFLRNNAQFQALRTMVQQNPQLLQPMLQELGRQNPQLLRLINENHVEFLRLISEAGGEN 317
Query: 190 PVAGD 194
P AGD
Sbjct: 318 PEAGD 322
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
LDVQ + V +K++I+ +G E + Q LI+ GK+L D+ + E + E+ F+VVML
Sbjct: 15 LDVQPADTVIAVKKQIEDLQGKESFPCAQQLLIHQGKVLKDETTMDENKVSENGFLVVML 74
Query: 80 SKPKPT 85
+K + +
Sbjct: 75 TKSRSS 80
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G
Sbjct: 284 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPNLVRLIQEHQTDFLRLINEPVEGG 343
Query: 195 RRN 197
N
Sbjct: 344 EGN 346
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 26 QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
++ + +K+ I++ +G++ Y A Q LIY GK+L D+ + E + E+ F+V+ML+K K
Sbjct: 20 EDTIADVKKSIETTQGADVYPAGQQMLIYQGKVLKDNTTIDENKVAENSFVVIMLTKNK 78
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 101 QESEATRPATATSD---SMLKVFFERV--NPYGGESEDPLAFLRTQPQFQQMRTVVQQNP 155
Q +AT+PA A+S S L +F + + E L LR QF+ + ++VQ NP
Sbjct: 226 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 285
Query: 156 ELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
++L +LQ++G+ NP +L+LI NQ F+R++NEP GD ++N+L
Sbjct: 286 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGD-EDENLL 330
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 27 EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
++V +K+ I+S +G Y A+ Q LI+ G +L DD L E + E+ F+V+ML + K +
Sbjct: 21 DKVSDVKKLIESSQGQNVYPADQQMLIHQGTVLKDDTTLEESKVLENNFLVIMLRQNKGS 80
Query: 86 PAPYSGPSDPTQPAGQ 101
+ + P+ +P+ Q
Sbjct: 81 SS--AAPAKSKEPSNQ 94
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 11 ITQNQWQQTVSHL--DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V + D + + LK+KIQ +G A QK+IY+GKILS+D+ +
Sbjct: 3 ITIKTTQQKVFQIEIDTSDTIAVLKDKIQESQGHPTAA--QKIIYSGKILSNDKTIDSCG 60
Query: 69 IDESKFIVVMLSKPKPTPAPYSGPSDPTQ 97
I E F+V+M+SKPKPTPA + S Q
Sbjct: 61 IKEKDFLVLMVSKPKPTPAATASTSSAPQ 89
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L LR PQ QQ+R + +P++ ++QQ+ NPA+ ++++ N +A ++L
Sbjct: 262 LEALRDNPQIQQLRQQLADDPQMAQPLIQQLAMQNPAMAQMLAQNPDALAQLL 314
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 6/106 (5%)
Query: 101 QESEATRPATATSD---SMLKVFFERV--NPYGGESEDPLAFLRTQPQFQQMRTVVQQNP 155
Q +AT+PA A+S S L +F + + E L LR QF+ + ++VQ NP
Sbjct: 201 QALQATQPAVASSGPNASPLDLFPQALPNASANAAGEGNLDVLRNNAQFRSLLSLVQANP 260
Query: 156 ELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVL 201
++L +LQ++G+ NP +L+LI NQ F+R++NEP GD ++N+L
Sbjct: 261 QILQPLLQELGKQNPQILQLIQDNQAEFLRLINEPAEGD-EDENLL 305
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI +EKG + KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISTEKG--WDVPSLKLIYSGKILQDDKTVEFYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYSGPSDPTQ 97
M+SKPK P+ S PS P +
Sbjct: 69 CMVSKPKTQPSSQS-PSTPAK 88
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+GQ NP + +LI N+EAF+++L+E
Sbjct: 260 LDFLRNHPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSE 314
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI +EKG + KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISTEKG--WDVPSLKLIYSGKILQDDKTVEFYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYSGPSDPTQ 97
M+SKPK P+ S PS P +
Sbjct: 69 CMVSKPKTQPSSQS-PSTPAK 88
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+GQ NP + +LI N+EAF+++L+E
Sbjct: 251 LDFLRNHPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSE 305
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFE-----RVNPYGGESEDPLAFL 138
P PA P DP+Q A Q ++ + P++ + + L +F + N GG L L
Sbjct: 224 PVPAAVQ-PVDPSQ-APQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGN----LDVL 277
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRN 197
R QF+ + ++VQ NP++L +LQ++G+ NP +L+LI NQ F+R++NEP G N
Sbjct: 278 RNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGN 336
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+VK+L E Q + + Y A+ Q LI+ G +L +D L E + E+ FIV+ML
Sbjct: 25 DVKKLIEVTQGD--NVYPADQQMLIHQGNVLKNDTTLEENKVVENNFIVIML 74
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFE-----RVNPYGGESEDPLAFL 138
P PA P DP+Q A Q ++ + P++ + + L +F + N GG L L
Sbjct: 224 PVPAAVQ-PVDPSQ-APQSAQLSIPSSGPNANPLDLFPQVLPNASANAGGGN----LDVL 277
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRN 197
R QF+ + ++VQ NP++L +LQ++G+ NP +L+LI NQ F+R++NEP G N
Sbjct: 278 RNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLRLINEPAEGAEGN 336
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+VK+L E Q + + Y A+ Q LI+ G +L +D L E + E+ FIV+ML
Sbjct: 25 DVKKLIEVTQGD--NVYPADQQMLIHQGNVLKNDTTLEENKVVENNFIVIML 74
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 49/222 (22%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D +EV+ LK+++ + AE +LIY G+I+ D LSEY I E K IV+M K
Sbjct: 17 MDESQEVRALKQRLGNSPKVAMAAENLQLIYNGRIMEDAMPLSEYRIAEDKIIVLM-GKK 75
Query: 83 KPTPAPYSGPSDPTQPAGQ-----ESEATRPATATSD-----------------SMLKVF 120
K +P PT P +E P+ A +D S L+
Sbjct: 76 KVIESPSEEQVAPTPPLAAGPTVLRTEDVAPSLAPNDQWVNDLMSMGYGEEEVRSALRAS 135
Query: 121 F---ERVNPY-------------------GGESEDPLAFLRTQPQFQQMRTVVQQNPELL 158
F ER Y ++ + L L P +MR ++ QNPEL+
Sbjct: 136 FNHPERAIEYLINGIPQEVASEQGLAAVPNVQASEQLQHLLADPSITRMREMLNQNPELM 195
Query: 159 PTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNV 200
++ ++ +++PA E + NQ+ F+ M++ G RR V
Sbjct: 196 HRLMDRLAETDPATYEALGRNQD-FLNMIS---GGARRTNEV 233
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 98/242 (40%), Gaps = 76/242 (31%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV------ 76
D+++ + ++K +++ ++ K+I GKIL D Q +S S F++
Sbjct: 24 FDLKKAISEVKRYDVTDEMLRDSSKGMKIILQGKILDDSQTISSLGPKISFFVMMPPEGV 83
Query: 77 ----VMLSKPKPTPAPYSGPSDPTQPAGQESEATRP-------ATATSDSMLKVFFERVN 125
V +SKP+ PA SG + T G++ EA+ A + L++ F N
Sbjct: 84 TLKKVEVSKPQDQPAVTSGLQNNTILMGEDLEASVREICGMGFAESEVRRALRLAFN--N 141
Query: 126 P-------YGGESED-----------------------------PLAF------------ 137
P Y G S+D PL F
Sbjct: 142 PDRAVEILYNGASDDAQQMQNEQPAEQQQQQQGASPEAPSHGSMPLRFNMDALAVNASEA 201
Query: 138 ---------LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
LR PQF +R VQ P LLP +L QIG+ NP+LL I+ NQ FVR++N
Sbjct: 202 GAGGNQLEMLRRDPQFAFVRHCVQSQPSLLPELLLQIGRVNPSLLATINQNQAEFVRIVN 261
Query: 189 EP 190
EP
Sbjct: 262 EP 263
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLRT QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F++++NEP+ G
Sbjct: 263 LDFLRTNQQFQALRAMVQSNPQILQPMLQELGKQNPHLMRLIQEHQADFLQLINEPMEG- 321
Query: 195 RRNKNVLG 202
+N+LG
Sbjct: 322 --GENLLG 327
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 27 EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
+ V +K I++ +G+ Y A Q LIY GK+L D L E N+ E+ FIV+MLSK K
Sbjct: 21 DSVADVKRSIETAQGAAVYPAAQQMLIYQGKVLKDGTTLLENNVAENSFIVIMLSKSKSP 80
Query: 86 PAPYSGPSDPTQPAGQESEA--TRPATATS 113
S S P ++ A + PA A S
Sbjct: 81 SGEGSTTSTAAAPKAPQTSAPPSVPAPAVS 110
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 253 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGE 312
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V +K I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K +P
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 87 APYSGPSDPTQPAGQESEATRPATATS 113
SG S + PA AT+P T +
Sbjct: 81 ---SGASTASAPA---PSATQPQTVAT 101
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia
chinensis]
Length = 367
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D +E VK LKEKI+SEKG + + E QKLIYAG+IL DD AL EYNI+E + LSK
Sbjct: 17 IDPEETVKALKEKIESEKGKDAFPVEDQKLIYAGEILKDDTALKEYNIEEKDSV---LSK 73
Query: 82 P 82
P
Sbjct: 74 P 74
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 55/84 (65%), Gaps = 10/84 (11%)
Query: 108 PATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQ 167
PA+ATS +M +P G PL FL+ Q QFQQ+R ++QNP LLP +LQQ+G
Sbjct: 217 PASATSTAMAS------SPEG----TPLEFLQNQLQFQQLRQTIRQNPSLLPMLLQQLGL 266
Query: 168 SNPALLELISHNQEAFVRMLNEPV 191
P LL+LIS QE F++ML+EPV
Sbjct: 267 RGPHLLQLISQYQEHFIQMLHEPV 290
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T QQ V ++ + E V LK+KIQ+E+G + A QKLI++GK+L D++ + N
Sbjct: 4 LTVKTLQQKVFTIEAEGTETVGDLKKKIQAEQGHD--AATQKLIFSGKVLPDEKVVETLN 61
Query: 69 IDESKFIVVMLSKPKPTPA-PYSGPS 93
I + F+V+M++KPKPTP P +G S
Sbjct: 62 IKDKDFLVLMVAKPKPTPVTPAAGSS 87
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
QQ+R +V QNP LL ++QQ+ ++NP L +++N E +++L
Sbjct: 285 QQLRELVAQNPALLQGLIQQLAENNPELANQLANNPEMLLQVL 327
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
L FLR+ PQF +R +VQ NP +L +LQ++G+ NP LL LI+ NQ+ F+R++NEP
Sbjct: 254 LDFLRSNPQFIALRQIVQSNPMILQPMLQELGKQNPELLTLINANQQEFLRIINEP 309
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
LD ++++ +K+KI+ +G+++ A Q +IY GK+L DD L E I F+VVM+ +
Sbjct: 19 ELDSSDKIENVKQKIEGVQGADFPAANQVIIYQGKVLKDDTTLEENKITHENFVVVMIQR 78
Query: 82 PKPTPAP 88
+ +P
Sbjct: 79 ARKAASP 85
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 253 LDFLRNSHQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGE 312
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V +K I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K +P
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 87 APYSGPSDPTQPAGQESEATRPATATS 113
SG S + PA AT+P T +
Sbjct: 81 ---SGASTASAPA---PSATQPQTVAT 101
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR QFQ + +VQ NP++L +LQ++G+ NP +++LI NQ F+RM+NEP+ GD
Sbjct: 90 LDVLRNNVQFQNLLGLVQANPQILQPLLQELGKQNPQVMQLIQENQAEFMRMINEPLEGD 149
Query: 195 RRNKNVL 201
N+ +L
Sbjct: 150 EENEMML 156
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 253 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGE 312
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V +K I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K +P
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 87 APYSGPSDPTQPAGQESEATRPATATS 113
SG S + PA AT+P T +
Sbjct: 81 ---SGASTASAPA---PSATQPQTVAT 101
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 48/73 (65%), Gaps = 5/73 (6%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK-PTP 86
+V Q+KEKI EKG E KLIY+GKIL DD+ + YNI+E FIV M+SKPK P+
Sbjct: 6 KVGQVKEKISKEKGWE--VPQLKLIYSGKILQDDKTIETYNIEEKGFIVCMVSKPKAPSS 63
Query: 87 A--PYSGPSDPTQ 97
A P PS P++
Sbjct: 64 AATPSQAPSTPSR 76
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR P FQQ+R +VQQ P++L +LQQ+ NP + +LI N+E F+++L+E
Sbjct: 242 LDFLRNNPHFQQLRQLVQQQPQMLEPILQQVAAGNPQIAQLIGQNEEQFLQLLSE 296
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 60/234 (25%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q+T++ +D +EV+ LK+++ AE +LIY G+I+ D LSEY I E K I
Sbjct: 10 QRTITLEMDESQEVRALKQRLGKSPEVAMAAENLQLIYNGRIMEDAMPLSEYRIAEDKII 69
Query: 76 VVMLSKP----------KPTPAPYSGPSDPTQPAGQESEATRPATATSD----------- 114
V+M K PTP +GP+ +E P+ A +D
Sbjct: 70 VLMGKKRVIESPPEEQVAPTPPLAAGPT------VLRTEDVAPSLAPNDQWVNDLMSMGY 123
Query: 115 ------SMLKVFF---ERVNPY-------------------GGESEDPLAFLRTQPQFQQ 146
S L+ F ER Y ++ + L L P +
Sbjct: 124 GEEEVRSALRASFNHPERAIEYLINGIPQEVASEQGLAAVPNVQASEQLQHLLADPSITR 183
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNV 200
MR ++ QNPEL+ ++ ++ +++PA E + NQ+ F+ M++ G RR V
Sbjct: 184 MREMLNQNPELMHRLMDRLAETDPATFEALGSNQD-FLNMIS---GGARRTNEV 233
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 102/216 (47%), Gaps = 44/216 (20%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q+T++ ++ +EV+ LK+K+ + AE +LIY+G+I+ D LSEY I E K I
Sbjct: 10 QRTITLEMNESQEVRALKQKLGNLPEVAMPAENLQLIYSGRIMEDAMPLSEYRIAEDKII 69
Query: 76 VVMLSKP--KPTPAPYSGPSDP--TQPAGQESEATRPATATSD----------------- 114
V+M K K +P P+ P P +E P+ A +D
Sbjct: 70 VLMGKKKVDKSSPEEKVAPTPPLAAGPNVLRTEDVVPSLAPNDQWVSDLMSMGYGEEEVR 129
Query: 115 SMLKVFF---ER-----VN--PYGGESEDPLAFL---RTQPQFQQ---------MRTVVQ 152
S L+ F ER +N P SE LA + +T Q QQ MR ++
Sbjct: 130 SALRASFNHPERAIEYLINGIPQEVVSEQGLAAIPSVQTSDQLQQLMADLNITRMREMIN 189
Query: 153 QNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
QNPEL+ ++ ++ +++PA E+ NQE + M++
Sbjct: 190 QNPELIHRLMNRLAETDPATFEVFQRNQEELMNMIS 225
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G
Sbjct: 257 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLMRLIQEHQADFLRLINEPVEG 315
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I++ +G++ Y + Q LI+ GK+L D+ + E + E FI
Sbjct: 11 THFEIEVKPEDTVADVKKNIETVQGADVYPSAQQMLIHQGKVLRDETTMEENKVAEKSFI 70
Query: 76 VVML 79
V+ML
Sbjct: 71 VIML 74
>gi|37927447|pdb|1P98|A Chain A, High-Resolution Nmr Structure Of The Ubl-Domain Of
Hhr23a
gi|37927452|pdb|1P9D|U Chain U, High-Resolution Structure Of The Complex Of Hhr23a
Ubiquitin-Like Domain And The C-Terminal Ubiquitin-
Interacting Motif Of Proteasome Subunit S5a
Length = 78
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 3/74 (4%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEY 67
IT QQ + ++ E VK LKEKI++EKG + QKLIYAGKILSDD + +Y
Sbjct: 5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDY 64
Query: 68 NIDESKFIVVMLSK 81
IDE F+VVM++K
Sbjct: 65 RIDEKNFVVVMVTK 78
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 63.9 bits (154), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 10 DITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
++T QQ V + V++ + LK+KI++++G + QKLI++GKIL+DD+ +
Sbjct: 3 EVTIKTLQQKVFKVVVEDSDTIATLKQKIEADQG--FAVNTQKLIFSGKILADDRTIESL 60
Query: 68 NIDESKFIVVMLSKPKPTPA-PYSGPSDPTQPA 99
I E F+VVM+SKPKP PA P + QPA
Sbjct: 61 QIKEKDFLVVMVSKPKPQPATPKKDEAKVEQPA 93
Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN-EPVAGDRRNKN 199
Q Q ++ Q+NP LL +++Q+I QSNP L +L++ N +A + +L+ E GD ++++
Sbjct: 223 QAQLAELVQAAQENPALLQSLIQEIAQSNPTLAQLLAQNPQALLDLLSGEGAEGDFQDED 282
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ Q ++ V D+ V +K+KI EKG + + QKLIY+GKIL DD + Y
Sbjct: 5 FKDLKQQKFTLDVEPTDL---VSAVKQKIAGEKG--WDPKDQKLIYSGKILKDDDTVESY 59
Query: 68 NIDESKFIVVMLSKPK-PTPAPYSGPSDPTQPA 99
I+E F+V M++KPK P P P + S P PA
Sbjct: 60 KIEEKGFVVCMVNKPKAPKPTPAAESSAPAVPA 92
>gi|323451497|gb|EGB07374.1| hypothetical protein AURANDRAFT_53989 [Aureococcus anophagefferens]
Length = 371
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
PLA LR PQF +R +Q NP L VL IG+ +P LL LI NQ F++M+NEP+ G
Sbjct: 199 PLATLRAHPQFDDLRRTIQANPGALQQVLAGIGRDSPELLALIHANQAEFLQMMNEPLLG 258
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 43 EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
E A KLI++GK+L D+ L++ + E F+V M++KPK
Sbjct: 36 ELKAAAMKLIHSGKVLKDEDTLADKGVTEQSFLVCMVTKPK 76
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 103 SEATRPATATSDSMLKVFFERV-NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTV 161
+EAT P+ + + L +F + + N L FLR PQFQ +RT+VQ NP++L +
Sbjct: 235 AEATAPSGGPNAAPLNLFPQGLPNLGAAAGGGALDFLRNNPQFQALRTMVQANPQILQPM 294
Query: 162 LQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LQ++ + NP L+ LI +Q F+ ++NE GD
Sbjct: 295 LQELSKQNPQLMRLIQDHQAEFLHLINEETDGD 327
Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 27 EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
+ V +K++I+ +G + Y Q LI+ GK+L DD + + I E+ F+VVML+K K +
Sbjct: 21 DTVMAVKKQIEEIQGKDTYPCGQQLLIHQGKVLKDDTTIEDNTITENGFLVVMLTKSKTS 80
Query: 86 PA 87
A
Sbjct: 81 SA 82
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ Q ++ V ++ E V+++K KI EKG EY AE K+IY+GKIL DD+ + Y
Sbjct: 5 FKDLKQEKF---VIDVEPSETVREVKVKIAQEKG-EYDAERMKVIYSGKILQDDKTVESY 60
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQ 101
NI E F+V + SK +P A + P P+ PA +
Sbjct: 61 NIQEKDFLVCLPSK-QPKAASSTAPQVPSTPAAR 93
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
L FLR+ P FQQ+R +VQQ P +L +LQQ+ NP + +I N + F
Sbjct: 257 LEFLRSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQF 305
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E + QLKE+I E+G + QKLIY+GKIL D+ + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETIGQLKERISQERG--WDVALQKLIYSGKILQDENTIESYNIEEKGFIV 68
Query: 77 VMLSKPK-PTPAPYS 90
M++KPK TPA S
Sbjct: 69 CMVTKPKTTTPAATS 83
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G S L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+
Sbjct: 249 GGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLS 308
Query: 189 EPVAGD 194
E + D
Sbjct: 309 EDIEDD 314
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 96/230 (41%), Gaps = 53/230 (23%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T + V +DV EE + +K KI +G + Q LI GK L D +L+ +
Sbjct: 5 LTVKTLKGEVFRIDVAEESVMSDVKTKISEVRGHD--PGTQVLICGGKTLKDGDSLA-GS 61
Query: 69 IDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPA----TATSDSMLKVFFERV 124
+ F+V+M+ PA + P Q + A R A + + +++ + V
Sbjct: 62 VAAGGFLVLMVKALAIDPANVEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIPDNV 121
Query: 125 NPYGGESE--------------------------------------------DPLAFLRT 140
G S+ +PL F+R
Sbjct: 122 GAGSGGSDARGGGDAALAAAMMAGAEDEDGDEGGGGAAGLAQALMGMEAGEGNPLNFMRF 181
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PQF ++R +V++NP +LP VLQ + +P L+E I+ + + F+R++NEP
Sbjct: 182 HPQFDELRGLVRENPAMLPQVLQGLATQSPELIERINQHPDDFLRLMNEP 231
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 52/97 (53%), Gaps = 17/97 (17%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI EKG + QKLIY+GKIL D + YNI+E FIV
Sbjct: 11 QKFVIEAEPSETVGQVKEKISQEKG--WDVAQQKLIYSGKILQDANTIESYNIEEKGFIV 68
Query: 77 VMLSKPK--------------PTPAPYSGPSDPTQPA 99
M+SKPK TPAP + S PT PA
Sbjct: 69 CMVSKPKPAPSTSAAASSQAPSTPAPVAA-STPTAPA 104
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G S L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQ+ F+++L+
Sbjct: 260 GGSLGNLDFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQDQFLQLLS 319
Query: 189 EPVAGD 194
E + D
Sbjct: 320 EDIDDD 325
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL LR PQF +R +VQ NP++L VL QIGQ P LL+ I+ NQ F++++NEPV
Sbjct: 197 PLQALRNHPQFNDLRRLVQSNPQMLQQVLTQIGQQQPQLLQEINANQALFLQIMNEPV 254
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
H + + V +K I++ K SE A KLI++GK+L D+ +++ I E+ F+VVM++K
Sbjct: 16 HAEESQTVADVKGIIEATK-SELSAGTLKLIHSGKVLKDEDSIASAGIKENDFLVVMVTK 74
Query: 82 PK----------PTPAPYSGPSDPTQPA 99
K PTP P + P P A
Sbjct: 75 AKKPVAAKPAATPTPVPAATPGPPVAAA 102
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis
UAMH 10762]
Length = 392
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E + LK KI EKG E QKLIY+GKIL DD + Y I+E FIV M SKPK P
Sbjct: 21 ETIGALKRKISEEKGWE--PSTQKLIYSGKILQDDNTIESYKIEEKGFIVCMTSKPKAAP 78
Query: 87 AP 88
P
Sbjct: 79 KP 80
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR PQFQQ+R +VQQ P +L +LQQ+ NP L ++I+ N E F+++L E D
Sbjct: 270 LDFLRNNPQFQQLRQLVQQQPAMLEPILQQVAAGNPQLAQMITQNPEQFMQLLAEDADDD 329
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V +K I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K +P
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 87 APYSGPSDPTQPAGQESEATRPATATS 113
SG S + PA AT+P T +
Sbjct: 81 ---SGASTASAPA---PSATQPQTVAT 101
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 117 LKVFFERVNPYGGESE---DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALL 173
L +F E ++ GG++ L FLR QFQ +R++VQ NP++L +LQ++G+ NP LL
Sbjct: 229 LNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLL 288
Query: 174 ELISHNQEAFVRMLNEPVAG 193
+I + F++++NEP+ G
Sbjct: 289 RMIQEHNAEFLQLINEPLDG 308
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L + + E F+
Sbjct: 11 SHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVDNKVTEDGFL 70
Query: 76 VVMLSKPKPTPAPYS 90
VVMLSK K A S
Sbjct: 71 VVMLSKSKTAAAGTS 85
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR +FQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 252 LDFLRNSQKFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGE 311
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +K+ I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K
Sbjct: 23 VSDVKKAIETVKGAEYPAVKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTK 77
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPA------TATSDSMLKVFFERVNPYGGESED--PL 135
P P P P++PTQ S+AT+PA + + S L +F + + ++ L
Sbjct: 207 PVPPPSIQPANPTQ----ASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNL 262
Query: 136 AFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LR QF+ + ++VQ NP++L +LQ++G+ NP +L+LI NQ F+ ++NEP GD
Sbjct: 263 DALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGD 321
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D ++V +K I++ +G Y AE Q LI+ GK+L DD L E + E+ F+V+ML +
Sbjct: 17 VDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ 76
Query: 82 PKPT----PAPYSGPSD---PTQ--PAGQESEA-TRPAT 110
K + PA PS+ PTQ PA S+A PAT
Sbjct: 77 GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
FLR PQFQ +RT+V NP++L +LQ++G+ NP LL LI + F++++NEPV
Sbjct: 235 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPV 289
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L+E + E F+
Sbjct: 11 SHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQ--PAGQESEATRPATATSDSM 116
VVMLSK K + + + P Q P Q ++ PA + S+
Sbjct: 71 VVMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPSV 113
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPA------TATSDSMLKVFFERVNPYGGESED--PL 135
P P P P++PTQ S+AT+PA + + S L +F + + ++ L
Sbjct: 207 PVPPPSIQPANPTQ----ASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNL 262
Query: 136 AFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LR QF+ + ++VQ NP++L +LQ++G+ NP +L+LI NQ F+ ++NEP GD
Sbjct: 263 DALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGD 321
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D ++V +K I++ +G Y AE Q LI+ GK+L DD L E + E+ F+V+ML +
Sbjct: 17 VDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ 76
Query: 82 PKPT----PAPYSGPSD---PTQ--PAGQESEA-TRPAT 110
K + PA PS+ PTQ PA S+A PAT
Sbjct: 77 GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 10 DITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
D+ Q ++ V D+ + +KEKI +EKG + ++QKLIY+GKIL D++ ++ YNI
Sbjct: 692 DLKQQKFTLEVEPADL---ISAVKEKISAEKG--WDPKHQKLIYSGKILKDEETVASYNI 746
Query: 70 DESKFIVVMLSKPK 83
+E F+V M++KPK
Sbjct: 747 EEKGFVVCMVNKPK 760
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLRT PQFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N +AF+ +L E
Sbjct: 943 LDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLHLLGE 997
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL LR+ PQF +R +VQ NP L VL QIGQ P LL+ I+ NQ F++M+NEP+
Sbjct: 215 PLDALRSHPQFDDLRRLVQTNPSTLQAVLSQIGQQQPDLLQAINANQAEFLQMMNEPM 272
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++ ++ V ++K IQ+ K + A KLI++GK+L D+ + NI + F+VVM++K
Sbjct: 16 EVEAEKTVAEVKVAIQTNK--DLPASSMKLIHSGKVLKDEDKIESCNIKPNDFLVVMIAK 73
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 62.8 bits (151), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR PQFQ +R +VQ NP++L +L ++ + NP L +LI+ NQE F+R+LNEP
Sbjct: 243 LDFLRENPQFQAIRAMVQGNPQILQPMLAELQRQNPQLYQLIAGNQEEFLRLLNEPA 299
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
E LAFLR P F +M+ ++Q++P LLP +LQ+I SNP L+ +IS NQ F+ ++NE
Sbjct: 216 ESRLAFLREHPTFLEMKRLLQEDPSLLPHLLQKIQSSNPDLMRIISENQVEFLSLINE 273
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 23 LDVQEE-VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+DV+++ V+ LKEK E +Y E Q+LIY GKI+ DD LS Y++D+ KF+VVM K
Sbjct: 17 VDVEKDTVRTLKEKFFQESKQDYPVERQRLIYLGKIMEDDLPLSHYSLDDKKFVVVMNKK 76
Query: 82 P 82
P
Sbjct: 77 P 77
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
FLR PQFQ +RT+V NP++L +LQ++G+ NP LL LI + F++++NEPV
Sbjct: 278 FLRNNPQFQALRTMVHTNPQILQPMLQELGKQNPQLLRLIQDHHAEFLQLINEPV 332
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L+E + E F+
Sbjct: 11 SHFEIRVQLTDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDESTLAENKVSEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQ--PAGQESEATRPATATSDS 115
VVMLSK K + + + P Q P Q ++ PA + S
Sbjct: 71 VVMLSKSKTSVSAGQSSTQPAQNPPVAQPVLSSTPAAQVTPS 112
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Query: 117 LKVFFERVNPYGGESE---DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALL 173
L +F E ++ GG++ L FLR QFQ +R++VQ NP++L +LQ++G+ NP LL
Sbjct: 203 LNMFPETLSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLL 262
Query: 174 ELISHNQEAFVRMLNEPVAG 193
+I + F++++NEP+ G
Sbjct: 263 RMIQEHNAEFLQLINEPLDG 282
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L + + E F+
Sbjct: 11 SHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVDNKVTEDGFL 70
Query: 76 VVMLSK 81
VVMLSK
Sbjct: 71 VVMLSK 76
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 22 HLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
HLD + + + +K KIQ+E+G + E QK+I++GKIL+DD+ +++ I E F+VVM+
Sbjct: 14 HLDAELTDTIGTIKSKIQNEQG--HAPELQKIIFSGKILTDDKTVADCKIKEKDFLVVMV 71
Query: 80 SKPK-PTPA 87
SKPK P PA
Sbjct: 72 SKPKAPKPA 80
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 15/71 (21%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL---------------ISHNQEA 182
LR P F+QMR +V+ NP+ LP +L IGQS+P+LL++ I+ NQE
Sbjct: 193 LRQHPMFEQMRAIVRSNPQTLPQILSLIGQSDPSLLQVSLTIITYLIYYPYIAITENQEE 252
Query: 183 FVRMLNEPVAG 193
F+++L+EPV G
Sbjct: 253 FIQLLSEPVLG 263
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 18 QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY-NIDESKFIV 76
+T +D + V L KI S + A +LI+AGKIL +Q +S+Y +I + I+
Sbjct: 12 ETCVEVDPSDTVDALTNKIGSSLNNAS-ASKMRLIHAGKILKMEQKISDYSDIKDGDKII 70
Query: 77 VMLSK-------PKPTPAPYSGP 92
V+ SK PTPAP S P
Sbjct: 71 VLFSKQSEASTIANPTPAPTSTP 93
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR QFQQ+R VVQQNP++L +LQQ+G NP L LI + E F+++L+E
Sbjct: 196 LDFLRNNAQFQQLRQVVQQNPQMLEPILQQVGAGNPQLAALIGQHPEQFLQLLSE 250
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 4/77 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V +D + V++LKEKI E+G + QKLIY+GK+L+D ++++E
Sbjct: 3 ITVKTLQQKVFTIDAEPSNSVQELKEKISKEQGHD--VSSQKLIYSGKVLADTKSVAECE 60
Query: 69 IDESKFIVVMLSKPKPT 85
I E F+V+M++KPKP+
Sbjct: 61 IKEKDFLVLMVAKPKPS 77
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LR PQ QQ+R +VQ NP L+ ++QQ+ NP L + N A +L
Sbjct: 298 LRNHPQIQQLRELVQSNPGLIQPLVQQLAAQNPELAQAFMQNPFALANIL 347
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T Q +L++ E+ + ++K + SEKG +Y E QKLIY GKIL D + E
Sbjct: 5 VTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVG 64
Query: 69 IDESKFIVVMLSKPKPTP-APYS 90
D SKF+VVMLSK K T AP S
Sbjct: 65 FDSSKFVVVMLSKRKVTEVAPSS 87
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+ D L L PQ ++R ++QQNPE+L VLQQ+ NP L++ I +NQ+AF+ +L
Sbjct: 191 DGNDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLL 248
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR PQFQQ+RTVVQQ P++L +LQ + NP L ++I+ + E F+++L E D
Sbjct: 270 LDFLRNNPQFQQLRTVVQQQPQMLEPILQSVAAGNPQLAQIITQHPEQFMQLLAEDAGDD 329
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E + +K KI +EKG + QKLIY+GKIL DD + Y I+E FIV M SKPK
Sbjct: 21 ETIGAVKGKISAEKG--WDPSTQKLIYSGKILQDDNTIESYKIEEKGFIVCMTSKPK--- 75
Query: 87 APYSGPSDPTQPA 99
A + P++P PA
Sbjct: 76 AAATKPAEPATPA 88
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
LAFLR PQFQ +R +VQ NP +L +L ++ + NP L LI+ NQE F+++LNEP
Sbjct: 270 LAFLRDNPQFQAIRAMVQGNPSILQPMLGELQRQNPQLYHLINSNQEEFLQLLNEP 325
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 42/57 (73%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR PQFQ +R++VQ+NP++L +L ++G+ NP LL I + E F++++NEPV
Sbjct: 254 LEFLRNNPQFQTLRSMVQRNPQILQPMLLELGKQNPQLLRQIQEHHEEFLQLINEPV 310
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L+E I E F+
Sbjct: 11 SHFEIRAQPNDTVMAIKKNIEDLQGKDNYPCGQQLLIHNGKVLKDESTLAESKISEDGFL 70
Query: 76 VVMLSKPK 83
VVML K K
Sbjct: 71 VVMLGKSK 78
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride
IMI 206040]
Length = 367
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T +Q LDV+ +++ +KEKI +EKG E + QKLIY+GKIL DD + YN
Sbjct: 3 VTFRDLKQQKFVLDVEPTDQISAVKEKIAAEKGWE--PKTQKLIYSGKILKDDDTVQSYN 60
Query: 69 IDESKFIVVMLSKPK 83
I+E F+V M++KP+
Sbjct: 61 IEEKGFVVCMVNKPR 75
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR QFQ +R +VQ NP++L +LQ++G+ NP LL LI + F++++NEP+ G
Sbjct: 288 LEFLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEG 346
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
L FLR PQ +RT+VQ NP++L +LQ++G+ NPALL LI+ NQ F+R++NE A
Sbjct: 244 LDFLRNNPQ-ASLRTMVQANPQILQPMLQELGKQNPALLRLINDNQAEFLRLINEAGA 300
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H D++ + V +K +I+ +G E + Q LI+ GK+L D+ + E + E+ F+
Sbjct: 11 NHFDLEVSPADTVLNVKRQIEDSQGKESFPCSQQLLIHQGKVLKDETTMEENKVSENGFV 70
Query: 76 VVMLSKPKPTPAPYSGPS 93
VVML+K K T A S PS
Sbjct: 71 VVMLTKAK-TGAGASPPS 87
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E + +KEKI EKG E QKLIY+GKIL D + Y I+E FIV
Sbjct: 55 QKFVIEAEPSELISDVKEKITKEKGWE--VSQQKLIYSGKILQDANTVESYKIEEKGFIV 112
Query: 77 VMLSKPKPTPAPYS 90
M++KPKP A S
Sbjct: 113 CMITKPKPAAATAS 126
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR PQFQ +R VVQQ P +L +L +G NP L +LI N + F+++L+E D
Sbjct: 314 LDFLRNNPQFQHLRQVVQQQPGMLEPILASVGAGNPQLAQLIGQNPDQFLQLLSEDAGDD 373
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421
SS1]
Length = 396
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V +D + + V LK KIQ +G + E QKLIY+GK+L D + +
Sbjct: 3 ITVKTLQQKVFQIDAEGSDTVGDLKRKIQETQG--HALESQKLIYSGKVLPDSKTVESCE 60
Query: 69 IDESKFIVVMLSKPKPTPA 87
I E F+V+M+SKPKP P+
Sbjct: 61 IKEKDFLVLMVSKPKPAPS 79
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L PQ Q +R ++QQNP+L ++Q++ NP L +++ N E ++L+ +AG+
Sbjct: 274 LADHPQIQHLRQLMQQNPQLAQPIIQELAAQNPGLAQVLGQNPEMLAQLLSGALAGE 330
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
PL FLR PQFQ +R +V NP++L +L ++ + NP +L LI N + F+++LNEP G
Sbjct: 242 PLDFLRNNPQFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEG 301
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ L E ++E F+
Sbjct: 11 THFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLEENKVNEDGFL 70
Query: 76 VVML 79
VVML
Sbjct: 71 VVML 74
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
PL FLR PQFQ +R +V NP++L +L ++ + NP +L LI N + F+++LNEP G
Sbjct: 243 PLDFLRNNPQFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEG 302
Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ L E ++E F+
Sbjct: 11 THFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLEENKVNEDGFL 70
Query: 76 VVML 79
VVML
Sbjct: 71 VVML 74
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
FLR QFQ +R++VQ NP++L +LQ++G+ NP LL +I + F+++LNEP+ G
Sbjct: 236 FLRNNAQFQTLRSMVQANPQILQPMLQELGKQNPQLLRMIQEHHAEFLQLLNEPLEG 292
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 11 SHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVTEDGFL 70
Query: 76 VVML 79
VVML
Sbjct: 71 VVML 74
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + + + Q+KEKI EKG + A QKLIY+GKIL DD+ + +Y I+E F+V
Sbjct: 11 QKFVIDAEPTDTISQVKEKINKEKG--WDAAAQKLIYSGKILQDDKTVGDYKIEEKGFVV 68
Query: 77 VMLS-KPK 83
M+S KPK
Sbjct: 69 CMISNKPK 76
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 42/62 (67%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G S L FLR PQFQQ+R VVQQ P++L +LQQ+G NP L IS N EAF+R+L
Sbjct: 256 GAASLGNLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGMGNPQLAATISSNPEAFLRLL 315
Query: 188 NE 189
+E
Sbjct: 316 SE 317
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR QFQ +R++VQ NP++L +LQ++G+ NP LL +I + F++++NEP+ G
Sbjct: 233 LDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHHAEFLQLINEPLDG 291
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 11 SHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLADNKVTEDGFL 70
Query: 76 VVMLSKPKPTPAPYS 90
VVMLSK K A S
Sbjct: 71 VVMLSKSKTGTAGTS 85
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
FLR QFQ +R +VQ NP++L +LQ++G+ NP LL LI + F++++NEP+ G
Sbjct: 276 FLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEG 332
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVTEDGFL 70
Query: 76 VVMLSKPKPTPA 87
VVMLSK K A
Sbjct: 71 VVMLSKSKSIGA 82
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 40/57 (70%)
Query: 137 FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
FLR QFQ +R +VQ NP++L +LQ++G+ NP LL LI + F++++NEP+ G
Sbjct: 277 FLRNNHQFQALRAMVQANPQILQPMLQELGKQNPHLLRLIQEHHAEFLQLINEPLEG 333
Score = 42.7 bits (99), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVTEDGFL 70
Query: 76 VVMLSKPKPTPA 87
VVMLSK K A
Sbjct: 71 VVMLSKSKSIGA 82
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 109 ATATSDSMLKVFFERVNPYGGES---EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQI 165
+ A L +F E + G+ + L FLR PQFQ +R +VQ NP++L +L ++
Sbjct: 83 SAALGGGALNLFPEGIPDMSGDGAGDDGMLDFLRENPQFQAIRAMVQGNPQILQPMLAEL 142
Query: 166 GQSNPALLELISHNQEAFVRMLNEPV 191
+ NP L LI+ NQE F+ +LNEP+
Sbjct: 143 QRQNPQLYHLINANQEEFLALLNEPL 168
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 128 GGESE-DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
G E E D +A LR P +Q+R VVQ++P +L V+ +I ++NP + LI NQEAFV++
Sbjct: 342 GNEPEYDGIAQLRHNPAIKQLRLVVQRDPTMLHDVIMEIERANPNITRLIQENQEAFVQL 401
Query: 187 LNEPV 191
LNE V
Sbjct: 402 LNERV 406
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 40/54 (74%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
V++LK+KI+ +G+ Y ++ Q LI+AG++LSD+Q + + N D KFIVV++ P
Sbjct: 67 VRELKQKIEKTRGARYASDLQTLIHAGRVLSDEQTVKDVNFDPKKFIVVVVKPP 120
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
+ Q+KEK+ +EKG + A QKLIY+GK+L+D + Y I+E FIV M+SKPK
Sbjct: 23 IAQVKEKVAAEKG--WDASQQKLIYSGKVLADANTVESYKIEEKGFIVCMISKPK 75
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P +L LQQ+ + NP L ++IS N + F+++L E GD
Sbjct: 285 LEFLRNSPHFQQLRQLVQQQPAMLEPFLQQVAEGNPQLAQMISLNPDQFLQLLAEDQEGD 344
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
L+ + + ++K+ + +EKG +Y E QKLIY GKIL D +++ D SKF+VVML+K
Sbjct: 18 ELNEDQTIAEVKKLVATEKGDDYAPELQKLIYNGKILDDATKVADVGFDSSKFVVVMLTK 77
Query: 82 PKPTPAP 88
K P
Sbjct: 78 KKAAETP 84
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
L L PQ ++R+++QQNPE+L VLQQ+ NP L++ I +NQ+AF+ +LN
Sbjct: 197 LNMLANMPQLAEIRSMIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDILN 250
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 60/105 (57%), Gaps = 9/105 (8%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q QQ V LDV+ + K+Q ++ + E QK+I++GKILSD++ +S+ + E F
Sbjct: 9 QKQQFV--LDVEPSITIANLKLQIKESQGFEPELQKIIFSGKILSDEKLISDIEVKEKDF 66
Query: 75 IVVMLSKPK--PT-PAPYSG----PSDPTQPAGQESEATRPATAT 112
V+ML KPK PT PAP + PS + P + A PAT+T
Sbjct: 67 FVIMLMKPKTAPTVPAPSTSAAAVPSSTSAPVQTSTPAAPPATST 111
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV--AGD 194
LR PQ Q+R +VQ NP+LL +QQ+GQSNPALL +S N E + L+E AGD
Sbjct: 279 LRNNPQMVQLRQLVQTNPQLLQPFMQQLGQSNPALLAQLSANPELLMGFLSEGADQAGD 337
>gi|339265489|ref|XP_003366130.1| XPC-binding domain protein [Trichinella spiralis]
gi|316962238|gb|EFV48573.1| XPC-binding domain protein [Trichinella spiralis]
Length = 217
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 128 GGESE-DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
G E E D +A LR P +Q+R VVQ++P +L V+ +I ++NP + LI NQEAFV++
Sbjct: 35 GNEPEYDGIAQLRHNPAIKQLRLVVQRDPTMLHDVIMEIERANPNITRLIQENQEAFVQL 94
Query: 187 LNEPV 191
LNE V
Sbjct: 95 LNERV 99
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 5/84 (5%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LDV+ + + +K++I ++G + + QKLIY+GKIL D+ + Y I+E F+V +++
Sbjct: 15 LDVEPTDLISAVKQRISEQRG--WDPKLQKLIYSGKILKDEDTVETYKIEEKGFVVCVVN 72
Query: 81 KPKPTPAPYSGPSD-PTQPAGQES 103
KPKP PAP + S P PA +S
Sbjct: 73 KPKPAPAPEASSSAVPATPAPAQS 96
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ Q ++ V ++ E V+++K KI EKG EY AE K+IY+GKIL DD+ + Y
Sbjct: 5 FKDLKQEKF---VIDVEPSETVREVKVKIAQEKG-EYEAERMKVIYSGKILQDDKTVESY 60
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQ 101
NI E F+V + SK A + P+ PA +
Sbjct: 61 NIQEKDFLVCLPSKQPKAAASTASSQVPSTPAAR 94
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
L FLR+ P FQQ+R +VQQ P +L +LQQ+ NP + +I N + F
Sbjct: 260 LEFLRSNPHFQQLRQLVQQQPHMLEPILQQVAAGNPQIASIIGQNSDQF 308
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 8/97 (8%)
Query: 95 PTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQFQQMRTVVQQ 153
P QPA P + + L +F + + G E + L FLR QFQ +R +VQ
Sbjct: 222 PPQPA-------VPTGGPNTNPLNLFPQGIPNMGAEDNAGDLDFLRNNQQFQALRAMVQA 274
Query: 154 NPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
NP++L +LQ++G+ NP L++LI +Q F+ ++NEP
Sbjct: 275 NPQILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP 311
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+++Q+ V +K+ I+ +G+ Y A Q LI+ GK+L DD L E N+ E F+V+MLS
Sbjct: 16 QVNLQDSVADVKKTIEVAQGAGVYPAAQQMLIHQGKVLKDDTTLEENNVAEDSFVVIMLS 75
Query: 81 KPK 83
K K
Sbjct: 76 KNK 78
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
N GG L LR QF+ + ++VQ NP++L +LQ++G+ NP +L+LI NQ F+
Sbjct: 256 NAAGGN----LDVLRNNSQFRGLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFL 311
Query: 185 RMLNEPVAGDRRN 197
R++NEP G N
Sbjct: 312 RLINEPAEGAEGN 324
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D +V LK+ I++ +G Y A+ Q LI+ G +L +D L E + E+ FIV+MLSK
Sbjct: 17 VDPTSKVVDLKKLIENTQGQNVYPADQQMLIHQGNVLKNDTTLEENKVLENNFIVIMLSK 76
Query: 82 PKPTPAPYSGPSDPT-QPAGQESEATRPA 109
T A +PT QP + PA
Sbjct: 77 KGSTSAASGTAKEPTKQPMVDRAAPVAPA 105
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 93 SDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGES--------EDPLAFLRTQPQF 144
+ P QPA PA+A ++ F + P GG + L LR PQF
Sbjct: 226 ASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQF 285
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE G N+LG
Sbjct: 286 QALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGG-PGGNILG 342
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 29 VKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +K I++ +G S Y A+ Q LIY GKIL D+ L + E+ F+V+MLSK K
Sbjct: 23 VADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAK 78
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 93 SDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGES--------EDPLAFLRTQPQF 144
+ P QPA PA+A ++ F + P GG + L LR PQF
Sbjct: 226 ASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVVPGAGSGALDALRQLPQF 285
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE G N+LG
Sbjct: 286 QALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGG-PGGNILG 342
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 29 VKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +K I++ +G S Y A+ Q LIY GKIL D+ L + E+ F+V+MLSK K
Sbjct: 23 VADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAK 78
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 93 SDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGES--------EDPLAFLRTQPQF 144
+ P QPA PA+A ++ F + P GG + L LR PQF
Sbjct: 226 ASPAQPAVALPVQPSPASAGPNANPLNLFPQGVPSGGSNPGVIPGAGSGALDALRQLPQF 285
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE G N+LG
Sbjct: 286 QALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPEGG-PGGNILG 342
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 29 VKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +K I++ +G S Y A+ Q LIY GKIL D+ L + E+ F+V+MLSK K
Sbjct: 23 VADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAK 78
>gi|397637202|gb|EJK72575.1| hypothetical protein THAOC_05883 [Thalassiosira oceanica]
Length = 504
Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 35/53 (66%)
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
R PQF +R +VQ NP L VL QIGQ P LL+ I+ NQ+ F+ M+NEPV
Sbjct: 307 RNHPQFDSLRRLVQSNPNALQQVLAQIGQQQPELLQAINANQQEFLAMMNEPV 359
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 37 QSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
Q SE A KLI++GK+L DD+ + NI + F+VVM+
Sbjct: 83 QENTKSELPAAGMKLIHSGKVLKDDEKIESCNIKPNDFLVVMI 125
>gi|327493259|gb|AEA86336.1| putative DNA repair protein [Solanum nigrum]
Length = 172
Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 99 AGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPE 156
AG + T P++ T +S F E V GG L FL QFQ +R++VQ NP+
Sbjct: 10 AGTTAPPTAPSSGTPNSAPLNLFPQENVAGAGGAGLGSLDFLMNNQQFQALRSMVQANPQ 69
Query: 157 LLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+L +LQ++G+ NP LL I + + F++++NEPV G
Sbjct: 70 ILRPMLQELGKQNPQLLRSIQEHDQEFLQLINEPVDG 106
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V ++ + + V LK+KIQ +G + + QKLIY+GK+L D +++
Sbjct: 3 ITVKTLQQKVFQIEAEGTDTVADLKQKIQETQG--HGVDSQKLIYSGKVLPDSKSIESCE 60
Query: 69 IDESKFIVVMLSKPKPTPA 87
I E F+V+M+SKPKPT A
Sbjct: 61 IKEKDFLVLMVSKPKPTAA 79
Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
PQ Q +R ++ QNP L+ V+Q+I NP L +L + N EA ++L
Sbjct: 274 HPQIQHLREIMAQNPALIQPVIQEIAAQNPQLAQLFAQNPEALAQILG 321
>gi|428673376|gb|EKX74289.1| ubiquitin family member protein [Babesia equi]
Length = 301
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D V QLKEK + + + Q+LI+ G+I+ DD+ LS NI+ I ++ S
Sbjct: 18 EVDPAMTVLQLKEKCATSANAT--PDKQRLIFKGRIIKDDEILSNLNIESGNTIHLVRSG 75
Query: 82 PKPTPAPYSG-PSDPTQPAGQESEATRPATAT---SDSMLKVFFERVNPYGGESEDPLAF 137
K TP+ S S+P +PA Q +T+T D M ++F V G + F
Sbjct: 76 VKSTPSTASAQQSEPEKPASQPQSTQGASTSTPFPPDFMSQMFQGGVGGMPGMNPGMAGF 135
Query: 138 LRTQPQ----------FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
PQ Q+M + NP+LL +++ +S+P L +++ NQ F +ML
Sbjct: 136 PELNPQSAAALLNTPVIQEMLAQISSNPQLLRSLV----ESSPLLQPMMAQNQ-MFNQML 190
Query: 188 NEP 190
N P
Sbjct: 191 NNP 193
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+R +PQFQQ+RT+++ NP+LL +QQ+ NP IS NQ+ F+ M+NEP
Sbjct: 218 IRNEPQFQQIRTLIRNNPQLLSQFIQQLQIENPEAFAAISANQQEFINMINEP 270
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
++E +S+ G Y AE QKLIY GKIL D++ + EY I E FIV+M++
Sbjct: 30 IEEAGKSDHGGVYKAEAQKLIYQGKILEDEKKIEEYQITEKGFIVLMVT 78
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 35/63 (55%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G PL FL P+FQQ+R ++Q +P LLP VLQ I NP LL S Q RML
Sbjct: 268 GSGGHPLDFLLNHPEFQQLRQIIQHDPSLLPEVLQGIRPRNPQLLAQFSQYQGYLSRMLT 327
Query: 189 EPV 191
PV
Sbjct: 328 APV 330
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T W Q H+D+ + V+ LKEKI++E+G + + Q+L+YAG++L DD L +
Sbjct: 3 LTLKAWPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDC 62
Query: 68 NIDESKFIVVMLSKPK 83
I E + V++++P+
Sbjct: 63 QIHEHHAVTVLVARPE 78
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +K KI++ G + QK+IY+GKIL+DD+ + I E F+V+M+SKPKPTP
Sbjct: 7 DTVGAIKSKIEAAHG--HPVASQKVIYSGKILADDKTIESCGIKEKDFLVLMVSKPKPTP 64
Query: 87 A 87
A
Sbjct: 65 A 65
>gi|422292930|gb|EKU20231.1| UV excision repair protein RAD23, partial [Nannochloropsis gaditana
CCMP526]
Length = 575
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L R PQF Q+R +VQ NP + VL IGQ +P LL++I Q+ FV M+NEP+ GD
Sbjct: 382 LEAFRALPQFDQLRRLVQSNPGAIDQVLGFIGQQSPQLLQVILAQQDEFVAMMNEPIEGD 441
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 33 KEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS-KPKP 84
+ K++ +G E AE Q + GK+L DD + + E+ F V M+S PKP
Sbjct: 224 RNKVKKLEGVEEGAEKQARVVKGKVLKDDDTIESTGVTETDFYVCMVSAAPKP 276
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 28/97 (28%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAG-------------------------KILSDD 61
E + QLKEKI EKG + A QKLIY+G KIL +
Sbjct: 21 ETIGQLKEKIAQEKG--WDAAQQKLIYSGELHFERHLRLARDLNLLSDVRPSTGKILQNA 78
Query: 62 QALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQP 98
+ YNI+E F+V M+SKPK PAP S P+ P+QP
Sbjct: 79 NTIESYNIEEKGFVVCMVSKPKTQPAP-STPAGPSQP 114
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR P FQQ+R +VQQ P +L +LQQ+G NP L +LI NQE F+++L+E + D
Sbjct: 283 LDFLRNNPHFQQLRQLVQQQPGMLEPILQQLGAGNPQLAQLIGQNQEQFLQLLSEDIEDD 342
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 95 PTQPAGQESEATRPATATSDSMLKVFFERVNPYG-GESEDP----LAFLRTQPQFQQMRT 149
P G+E++ P + T + F E V G G S P L FLR PQF +MR
Sbjct: 197 PDHVIGEEADDDVPESNTDTDL---FAEAVAQQGQGASVAPNTSALDFLRDNPQFIEMRR 253
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
+VQQ P LL ++QQ+ SNP L LI+ N EAF+
Sbjct: 254 MVQQQPHLLEPLIQQLAASNPQLAALITQNSEAFLH 289
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
+ D + QW V D E +K ++ +G +Y QK+IY+GKIL++ ++
Sbjct: 5 LRDTKRQQWTVDVEPSDTVETLK-----TKNAEGKDYGVGDQKMIYSGKILANTTSIESL 59
Query: 68 NIDESKFIVVMLS 80
N+ E FI+ M+S
Sbjct: 60 NLKEDAFIICMIS 72
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT + V DV E V +LK+ IQ++ + A +Q LIY GK+L +D LS YN
Sbjct: 3 ITIKNINKEVYTFDVTGDESVTELKQLIQNKHSHQ--ASWQTLIYGGKVLENDNKLSTYN 60
Query: 69 IDESKFIVVMLSKPKPTPAPYSGPSDPTQPA 99
I E+ F+V M+ KPK + P+ QPA
Sbjct: 61 ITENGFLVCMVKKPKEETVATTAPA--VQPA 89
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
G L+FLR PQFQQ+R +V P+LL +LQQIGQ+NP LL+LIS NQ F++ML
Sbjct: 241 GAGDASTLSFLRNSPQFQQLRQLVHSQPQLLQPLLQQIGQTNPELLQLISQNQGQFLQML 300
Query: 188 NE 189
NE
Sbjct: 301 NE 302
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQEEVK--QLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T QQ ++V++ K ++KE I + KG Y QKLI++GKIL+D + E
Sbjct: 3 LTFKTLQQDNFQVEVEQTAKVIEVKEAILAAKG--YTVASQKLIHSGKILNDASTIEELK 60
Query: 69 IDESKFIVVMLSKPK 83
I E FIVVM+SKPK
Sbjct: 61 ISEKDFIVVMVSKPK 75
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+ +KEKI +EKG + ++QKLIY+GKIL DD+ ++ YNI+E F+V M++K
Sbjct: 23 ISAVKEKISAEKG--WDPKHQKLIYSGKILKDDETVASYNIEEKGFVVCMVNK 73
Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR PQFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N + F+ +L E D
Sbjct: 278 LDFLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD 337
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE
Sbjct: 284 LDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSG 343
Query: 195 RRNKNVLG 202
N+LG
Sbjct: 344 TAGGNILG 351
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V ++K I+S +G Y A+ Q LI+ GKIL DD L + E+ F+V+ML
Sbjct: 23 VAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLEGNKVAENSFLVIML 74
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE
Sbjct: 284 LDALRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNESPDSG 343
Query: 195 RRNKNVLG 202
N+LG
Sbjct: 344 AAGGNILG 351
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V ++K I+S +G Y A+ Q LI+ GKIL DD L + E+ F+V+ML
Sbjct: 23 VAEVKRIIESTQGQNVYPADQQMLIHQGKILKDDTTLEGNKVAENSFLVIML 74
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 86/206 (41%), Gaps = 54/206 (26%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++V + V LK+ + AE +LIYAG+I+ D Q LSEYNI + K I+VM+ K
Sbjct: 16 EMNVSQSVLALKKHLAGIPEISLSAEQLQLIYAGRIMEDTQPLSEYNIQDGK-IIVMMGK 74
Query: 82 PKP----TPAP--YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPL 135
KP TP P+ P + E RP+ A ++ ++ G E E+
Sbjct: 75 NKPVQVETPVKEELVPPTPPLTAQSSQQEPRRPSQAPNEDRVRELVS----MGYEEEEVR 130
Query: 136 AFLR-------------------------------------------TQPQFQQMRTVVQ 152
A LR + P+F Q R ++
Sbjct: 131 AALRASFNHPERAIEYLINGLPPSQPLPTPSTTSSSSLSSPDWAELLSDPRFIQFRDAIR 190
Query: 153 QNPELLPTVLQQIGQSNPALLELISH 178
+PE L +L++IG+S+P LE I +
Sbjct: 191 DHPEALEGLLRRIGESDPETLEAIRN 216
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V LD + E V LK+KI +G + E QK+IY+GK+L DD+ + N
Sbjct: 3 ITVKTLQQKVFQLDAEGSETVGDLKKKINDLQG--HPVENQKIIYSGKVLPDDKTVESCN 60
Query: 69 IDESKFIVVMLSKPK 83
I E F+V+M+SKPK
Sbjct: 61 IKEKDFLVLMVSKPK 75
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L+ LR PQ Q+R +V QNP L+ ++QQ+ SNP L +LI+ N EA ++L
Sbjct: 270 LSALRDNPQIAQLRELVAQNPALIQPLIQQLAGSNPQLAQLIAQNPEALFQLL 322
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR PQFQ +R +VQ P +L +L ++ + NP L LI++NQE F+ +LNEP+
Sbjct: 226 LDFLRDNPQFQAIRAMVQGQPHILQPMLAELQRQNPQLYHLINNNQEEFLALLNEPL 282
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%), Gaps = 7/76 (9%)
Query: 10 DITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG--KILSDDQALSEY 67
D+ Q ++ V D+ + +KEKI EKG + ++QKLIY+G KIL DD+ ++ Y
Sbjct: 7 DLKQQKFVLEVEPTDL---ISAVKEKISGEKG--WDPKHQKLIYSGLGKILKDDETVASY 61
Query: 68 NIDESKFIVVMLSKPK 83
NI+E F+V M++KPK
Sbjct: 62 NIEEKGFVVCMVNKPK 77
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR PQFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N + F+ +L E D
Sbjct: 261 LDFLRHNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAANPDQFLSLLGESADDD 320
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 1 MGMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
MG L + + Q Q++ V D + + +KEKIQ +G + QKLI++GKIL D
Sbjct: 1 MGALQITVKTLQQKQFKLDV---DSSDTILSVKEKIQESQG--HAVAQQKLIFSGKILVD 55
Query: 61 DQALSEYNIDESKFIVVMLSK 81
D+ + +YNI E F+VVM++K
Sbjct: 56 DKKVEDYNITEKDFLVVMVAK 76
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LA R P FQQ+R +VQ NP LL +LQ IGQSNP L+ I+ + AF++ E G+
Sbjct: 266 LANFRNTPHFQQIRQLVQTNPALLQPLLQSIGQSNPELIRAINADPNAFLQAFLEGAEGE 325
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR QFQ +R +V NP++L +LQ++ + NP LL LI N + F++++NEP G
Sbjct: 244 LEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDG 302
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
+ + Q++ V D VK++ E+IQ + Y Q LI+ GK+L D+ L E
Sbjct: 5 VKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDS--YPWGQQLLIHNGKVLKDESTLEEN 62
Query: 68 NIDESKFIVVML 79
+ E F+VVML
Sbjct: 63 KVSEVGFLVVML 74
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR QFQ +R +V NP++L +LQ++ + NP LL LI N + F++++NEP G
Sbjct: 244 LEFLRHNQQFQALREMVHTNPQILQPMLQELSKKNPQLLRLIQENHDEFLQLINEPFDG 302
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
+ + Q++ V D VK++ E+IQ + Y Q LI+ GK+L D+ L E
Sbjct: 5 VKTLKGTQFEIRVQPNDTIMAVKKIIEEIQGKDS--YPWGQQLLIHNGKVLKDESTLEEN 62
Query: 68 NIDESKFIVVML 79
+ E F+VVML
Sbjct: 63 KVSEVGFLVVML 74
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T QQ LD + + V LK +I ++ ++ E QK+IY+GKILSD Q +
Sbjct: 3 LTFKTLQQKQFTLDAEPSDTVLDLKHRISQDQ--DFPVEQQKIIYSGKILSDTQTVEACK 60
Query: 69 IDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSML 117
I E F+VVM+SKPK PA + + +PA +P +TS S +
Sbjct: 61 IKEKDFLVVMVSKPKAAPAATTSKTATPEPA-------KPVASTSSSAV 102
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHN 179
R P F Q+R ++ QNP L+ ++QQ+ +NP L ++++ N
Sbjct: 285 FRNSPMFTQIRQMIAQNPALVQPLIQQLAATNPQLAQVMNQN 326
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 409
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q QQ V ++ V++LK I+ +G E E QKLI++GK+L+DD+ + + + E F
Sbjct: 9 QKQQFVLDVEPSTTVEKLKSLIKESQGFE--PEQQKLIFSGKVLADDKTIEQIGVKEKDF 66
Query: 75 IVVMLSKPK--PT-PAPYSGP 92
VVML KPK PT PAP S P
Sbjct: 67 FVVMLIKPKTAPTVPAPASVP 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L LR PQ Q+R +VQQNP LL LQQ+GQSNP LL ++ N + L E G
Sbjct: 266 LEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEG 324
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 409
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q QQ V ++ V++LK I+ +G E E QKLI++GK+L+DD+ + + + E F
Sbjct: 9 QKQQFVLDVEPSTTVEKLKSLIKESQGFE--PEQQKLIFSGKVLADDKTIEQIGVKEKDF 66
Query: 75 IVVMLSKPK--PT-PAPYSGP 92
VVML KPK PT PAP S P
Sbjct: 67 FVVMLIKPKTAPTVPAPASVP 87
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L LR PQ Q+R +VQQNP LL LQQ+GQSNP LL ++ N + L E G
Sbjct: 266 LEALRNNPQMIQLRQLVQQNPNLLQPFLQQLGQSNPNLLTQLTSNPTLLMSFLAEGAEG 324
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ FVR++NE G
Sbjct: 273 LDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGG 332
Query: 195 RRNKNVLG 202
N+LG
Sbjct: 333 -PGGNILG 339
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
EVK++ E Q + S Y A+ Q LIY GKIL D+ L + E+ F+V+MLSK K +
Sbjct: 25 EVKRIIETTQGQ--STYPADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAKAS 80
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ FVR++NE G
Sbjct: 273 LDALRQLPQFQALLQLVQANPQILQPMLQELGKQNPQILRLIQENQAEFVRLVNETPEGG 332
Query: 195 RRNKNVLG 202
N+LG
Sbjct: 333 -PGGNILG 339
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
EVK++ E Q + S Y A+ Q LIY GKIL D+ L + E+ F+V+MLSK K +
Sbjct: 25 EVKRIIETTQGQ--STYPADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAKAS 80
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE-PVAGDRR 196
LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE P +G
Sbjct: 287 LRALPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESGAA- 345
Query: 197 NKNVLG 202
N+LG
Sbjct: 346 -GNILG 350
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
EVK++ E Q + + Y A+ Q LI+ GKIL DD L N+ E+ F+V+MLSK K +P
Sbjct: 25 EVKRIIEGAQGQ--NVYPADQQMLIHQGKILKDDTTLEGNNVAENSFLVIMLSKAKASP- 81
Query: 88 PYSGPSDPTQ-PAGQESEATRPATAT 112
SGPS ++ P Q AT A AT
Sbjct: 82 --SGPSTASKAPTIQAQPATPVAAAT 105
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE-PVAGDRR 196
LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE P +G
Sbjct: 289 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESG--A 346
Query: 197 NKNVLGT 203
N+LG
Sbjct: 347 GGNILGA 353
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ V ++K I+S +G Y A+ +IY GKIL DD L + E+ F+V+MLSKP
Sbjct: 20 ESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLDANKVAENSFLVIMLSKP 77
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
PL FLR QFQ +R +V NP++L +L ++ + NP +L LI N + F+++LNEP G
Sbjct: 243 PLDFLRNNQQFQAVREMVHTNPQILQPMLVELSKQNPQILRLIEENHDEFLQLLNEPFEG 302
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ L E ++E F+
Sbjct: 11 THFEIRVQPNDTIMAVKKNIEEIQGKDSYPWGQQLLIFNGKVLKDESTLDENKVNEDGFL 70
Query: 76 VVML 79
VVML
Sbjct: 71 VVML 74
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE-PVAGDRR 196
LR PQFQ + +VQ NP++L +LQ++G+ NP +L LI NQ F+R++NE P +G
Sbjct: 289 LRQLPQFQALLALVQANPQILQPMLQELGKQNPQILRLIQENQAEFLRLVNETPESG--A 346
Query: 197 NKNVLGT 203
N+LG
Sbjct: 347 GGNILGA 353
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 26 QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ V ++K I+S +G Y A+ +IY GKIL DD L + E+ F+V+MLSKP
Sbjct: 20 ESSVGEVKRIIESAQGQNVYPADQLMIIYQGKILKDDTTLDANKVAENSFLVIMLSKP 77
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC
2509]
Length = 383
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT- 85
E + ++K+KI E+G + E QKLIY+GKIL D++ + Y I+E F+V +++KPK T
Sbjct: 21 ETISKVKQKISEERG--WAPELQKLIYSGKILKDEETVESYKIEEKGFVVCVVNKPKTTA 78
Query: 86 PAP 88
P P
Sbjct: 79 PKP 81
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
L FLR QFQQMR +VQ+ P++L +LQQ+G NP L ++I+ N + F+
Sbjct: 265 LDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL 314
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 10 DITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
D+ QN++ V + E + +LK KIQ++KG E QKLIY+GKIL D + Y+I
Sbjct: 7 DLKQNKF---VIEAEPSETIGELKAKIQADKGWEV--PQQKLIYSGKILQDANTVESYSI 61
Query: 70 DESKFIVVMLSK 81
+E FIV M+SK
Sbjct: 62 EEKGFIVCMVSK 73
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T + V DV +E+V QLKE I + ++L +Q LIY+GKIL +D LS YN
Sbjct: 3 VTIRNVNKEVYTFDVTGEEKVIQLKEMIADK--HKHLPTWQTLIYSGKILENDNQLSTYN 60
Query: 69 IDESKFIVVMLSKPK 83
I E+ FIV M+ KPK
Sbjct: 61 ITENGFIVCMVKKPK 75
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V +D + + V LK+KIQ +G + E QKLIY+GKIL D + +
Sbjct: 3 ITVKTLQQKVFQIDAEGSDTVADLKKKIQDNQG--HTIESQKLIYSGKILPDSKTVESCE 60
Query: 69 IDESKFIVVMLSKPK 83
I E F+V+M+SKPK
Sbjct: 61 IKEKDFLVLMVSKPK 75
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V ++ E + +K+KI E+G + + QKLIY+GKIL D+ + Y I+E F+V
Sbjct: 11 QKFVIEIEPSETIAAVKQKISDERG--WAPKTQKLIYSGKILKDEDTVESYKIEEKGFVV 68
Query: 77 VMLSKPKP 84
+++KPKP
Sbjct: 69 CVVNKPKP 76
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
E + ++K+KI E+G + E QKLIY+GKIL D++ + Y I+E F+V +++KPK T
Sbjct: 21 ETISKVKQKISEERG--WAPELQKLIYSGKILKDEETVESYKIEEKGFVVCVVNKPKTT 77
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
L FLR QFQQMR +VQ+ P++L +LQQ+G NP L ++I+ N + F+
Sbjct: 265 LDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL 314
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 382
Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ QN++ V + E + LK KIQ+EKG E QKLIY+GKIL D + Y
Sbjct: 5 FKDLKQNKF---VIEAEPSETIGALKAKIQAEKGWEV--PQQKLIYSGKILQDANTVESY 59
Query: 68 NIDESKFIVVML 79
NI+E FIV M+
Sbjct: 60 NIEEKGFIVCMV 71
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 92 PSDPTQPAGQESEATRPATATS--DSMLKVF------FERVNPYGGE------------- 130
P+ PT AG PA A S D + +F R P GG+
Sbjct: 198 PTSPTP-AGNTGATATPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGAA 256
Query: 131 -SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+ + L FLR PQFQQ+R VVQQ P++L +LQQ+G NP L ++I+ N E F+++L E
Sbjct: 257 LNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAE 316
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT- 85
E + ++K KI E+G + E QKLIY+GKIL D++ + Y I+E F+V +++KPK T
Sbjct: 21 ETIAKVKAKISEERG--WAPELQKLIYSGKILKDEETVESYKIEEKGFVVCVVNKPKTTA 78
Query: 86 PAPYSGPS 93
P P S
Sbjct: 79 PKPAESSS 86
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
L FLR QFQQMR +VQ+ P++L +LQQ+G NP L ++I+ N + F+
Sbjct: 305 LDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL 354
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea
okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea
okayama7#130]
Length = 377
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V H++V+ + + +K+KI E G A QK+IY+GKIL DD+ +
Sbjct: 4 ITVKTTQQKVHHVEVELTDTIGTVKQKISDEHGHPVAA--QKIIYSGKILPDDKTIESCA 61
Query: 69 IDESKFIVVMLSKPK 83
+ E F V+M+SKPK
Sbjct: 62 LKEKDFFVLMVSKPK 76
>gi|395335121|gb|EJF67497.1| hypothetical protein DICSQDRAFT_96928 [Dichomitus squalens LYAD-421
SS1]
Length = 459
Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI--VVMLSKPKP 84
+ V LK+ I +EK S+ A+ Q+LIY+G++L D+ ALS Y I S I V ++ P
Sbjct: 38 KTVADLKQAI-AEK-SDVPADRQRLIYSGRVLKDEDALSTYKIQSSHTIHMVKGAARSGP 95
Query: 85 TPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGESEDP--LAFLR 139
+ P + PT AGQ P T + M NP+ G DP + +
Sbjct: 96 SAQPTAPQQLPTMQAGQNPH--DPLTQLNGPMGFGLMAGFNPFADMGLNPNDPNMMQSML 153
Query: 140 TQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
PQF Q + V NP+ VL QI SNP L + +E F
Sbjct: 154 NSPQFLQQMSSVMSNPD----VLDQIINSNPQLAAMGPQVREVF 193
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + +++ +KEKI SEKG + A QKLIY+GKIL DD + YNI+E FIV
Sbjct: 11 QKFVIDAEPSDKILDVKEKIASEKG--WPASQQKLIYSGKILQDDNTVESYNIEEKGFIV 68
Query: 77 VML 79
M+
Sbjct: 69 CMV 71
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E V
Sbjct: 259 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV 315
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + +++ +KEKI SEKG + A QKLIY+GKIL DD + YNI+E FIV
Sbjct: 11 QKFVIDAEPSDKILDVKEKIASEKG--WPASQQKLIYSGKILQDDNTVESYNIEEKGFIV 68
Query: 77 VML 79
M+
Sbjct: 69 CMV 71
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E V
Sbjct: 258 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV 314
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ QN++ V + E + LK KIQ+EKG E QKLIY+GKIL D + Y
Sbjct: 5 FKDLKQNKF---VIEAEPSETIGALKSKIQAEKGWEV--PQQKLIYSGKILQDANTVESY 59
Query: 68 NIDESKFIVVML 79
NI+E FIV M+
Sbjct: 60 NIEEKGFIVCMV 71
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ QN++ V + E + LK KIQ+EKG E QKLIY+GKIL D + Y
Sbjct: 5 FKDLKQNKF---VIEAEPSETIGALKSKIQAEKGWEV--PQQKLIYSGKILQDANTVESY 59
Query: 68 NIDESKFIVVML 79
NI+E FIV M+
Sbjct: 60 NIEEKGFIVCMV 71
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 122 ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQE 181
E V+P +S L +R P F +R +QQ+P + ++L ++ + NP LL++I NQ
Sbjct: 250 EAVHPELQQSRSELDIIRRLPHFALLRRAIQQDPSQIQSLLAELRRMNPRLLDIIQRNQA 309
Query: 182 AFVRMLNEPV 191
F+ MLNEPV
Sbjct: 310 DFINMLNEPV 319
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 4/72 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T +Q LDV+ E + +KEKI +EKG E + QKLIY+GKIL D++ + YN
Sbjct: 3 VTFKDLKQQKFTLDVEPSELISAVKEKISAEKGWE--PKLQKLIYSGKILKDEETVGSYN 60
Query: 69 IDESKFIVVMLS 80
I+E F+V M++
Sbjct: 61 IEEKGFVVCMVN 72
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
L FLR QFQ +R +V NP++L +LQ++ + NP LL LI N + F+++LNE G
Sbjct: 242 LDFLRNNQQFQALREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLQLLNETFEG 300
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V H D VK+ E+IQ + Y Q LI+ GK+L D+ L E + E+ F+VVML
Sbjct: 17 VQHNDTIMAVKKNIEEIQGK--DSYPWGQQLLIHNGKVLKDESTLDENQVGEAGFLVVML 74
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ QN++ V + E + LK KIQ++KG E QKLIY+GKIL D + Y
Sbjct: 5 FKDLKQNKF---VIEAEPSETIGALKAKIQADKGWEVT--QQKLIYSGKILQDANTVESY 59
Query: 68 NIDESKFIVVML 79
NI+E FIV M+
Sbjct: 60 NIEEKGFIVCMV 71
Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 23/120 (19%)
Query: 92 PSDPTQPAGQESEATRPATATS--DSMLKVF------FERVNPYGGE------------- 130
P+ PT AG PA A S D + +F R P GG+
Sbjct: 200 PTSPTP-AGNTGATAAPANAPSGADEPMNLFEAAAQAANRDRPSGGQRGGSAPGATGGGA 258
Query: 131 -SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+ + L FLR PQFQQ+R VVQQ P++L +LQQ+G NP L ++I+ N E F+++L E
Sbjct: 259 LNANSLDFLRNNPQFQQLRQVVQQQPQMLEPILQQVGAGNPQLAQMIAQNPEQFLQLLAE 318
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 18/118 (15%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T +Q LDV+ +++ +KEKI +EKG + + QKLIY+GKIL DD + YN
Sbjct: 3 VTFRDLKQQKFVLDVEPTDKISAVKEKISAEKG--WDPKSQKLIYSGKILKDDDTVQSYN 60
Query: 69 IDESKFIVVMLSKPKPTPAPY--------------SGPSDPTQPAGQESEATRPATAT 112
I+E F+V M++KPKP AP S P P P ++A PAT T
Sbjct: 61 IEEKGFVVCMVNKPKPAAAPAAAAPPPATPAPPVASTPVVPPAPVQTSTQAAPPATPT 118
>gi|388583507|gb|EIM23809.1| ubiquitin-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 342
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++ ++ V +LKE+IQS S+Y A+ +LIY+GK+L D+Q LS YNI + ++ P
Sbjct: 19 INAEKTVLELKEQIQS-INSDYPADRLRLIYSGKVLKDEQQLSTYNIASGNTVHLVKGAP 77
Query: 83 KPTPAPYSGPSDP 95
K AP PS P
Sbjct: 78 KAPSAPTPAPSTP 90
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune
H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune
H4-8]
Length = 383
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V +DV+ E V LK+KI G + QK+IY+GKIL DD+ +
Sbjct: 3 ITVKTTQQKVFQIDVEGPETVGVLKQKISDAHG--HPVASQKIIYSGKILPDDKTIESCG 60
Query: 69 IDESKFIVVMLSKPK 83
I E F+V+M+SKPK
Sbjct: 61 IKEKDFLVLMVSKPK 75
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LA L++ PQ Q+R +VQQNP L+ ++QQ+ QSNPA+ + I + EA +++L
Sbjct: 259 LAALQSNPQIAQLRELVQQNPALVQPLVQQLAQSNPAIAQAIIQHPEAIMQLL 311
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T +Q LDV+ E + +KEKI +EKG + + QKLIY+GKIL D++ ++ YN
Sbjct: 3 VTFKDLKQQKFTLDVEPTELISAVKEKISAEKG--WDPKLQKLIYSGKILKDEETVASYN 60
Query: 69 IDESKFIVVMLS 80
I+E F+V M++
Sbjct: 61 IEEKGFVVCMVN 72
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQQ+R VVQQ P++L +LQQ+G NP L ELI+ N + F+++L E D
Sbjct: 266 LDFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGEDADDD 325
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 41/56 (73%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
D LA +++ P FQQ+R V+Q +P++L +L+ IG+++P LL+ I +Q+ F+ MLN
Sbjct: 188 DNLASIQSHPAFQQLRQVIQSDPQVLQRLLENIGETDPELLQKIIEHQDEFMEMLN 243
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis
subvermispora B]
Length = 363
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
+T QQ V H+D + + V +K+KI +G + E QK+IY+GKIL D + +
Sbjct: 3 LTVKTLQQKVFHIDAEGSDTVADIKQKISESQG--HAVESQKIIYSGKILPDTKTIESCE 60
Query: 69 IDESKFIVVMLSKPK 83
I E F+V+M+SKPK
Sbjct: 61 IKEKDFLVLMVSKPK 75
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
LA L+ PQFQQ+R V+ QNP L+ ++QQ+ +NP +L++ N EA + L
Sbjct: 241 LAALQNNPQFQQLRQVIAQNPALVQPLIQQLAGANPQFAQLLAQNPEALLTALG 294
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein
(ubiquitin-like protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 42/60 (70%), Gaps = 4/60 (6%)
Query: 22 HLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
HLD + + + +K KIQ E+G + E QK+I++GKIL+DD+ +++ NI E F+VVM+
Sbjct: 14 HLDAELTDTIGSIKAKIQKEQG--HAPELQKIIFSGKILTDDKTVADCNIKEKDFLVVMV 71
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + +++ +KEKI +EKG + A QKLIY+GKIL DD + YNI+E FIV
Sbjct: 11 QKFVIDAEPSDKILDVKEKIATEKG--WPASQQKLIYSGKILQDDNTVESYNIEEKGFIV 68
Query: 77 VML 79
M+
Sbjct: 69 CMV 71
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E V
Sbjct: 260 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV 316
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GGE D L++ P F+Q+R VQ +P+LL +L+ IGQ+NP LL+ I Q+ F+ ++
Sbjct: 197 GGE--DVFRMLQSHPMFEQIRQAVQSDPQLLQQILENIGQTNPELLQTIIQRQDEFMDLI 254
Query: 188 N-----EPVAGDRRNKNVLG 202
N +P + N N++
Sbjct: 255 NSGAEVDPYSNPETNPNIVS 274
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
L FLR QFQQMR +VQ+ P++L +LQQ+G NP L ++I+ N + F+
Sbjct: 131 LDFLRNNAQFQQMRQLVQEQPQMLEPILQQLGAGNPQLAQMIAQNSDQFL 180
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 31 QLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+KEKI +EKG + A QKLIY+GKIL DD + YNI+E FIV M+
Sbjct: 10 HVKEKIATEKG--WPASQQKLIYSGKILQDDNTVESYNIEEKGFIVCMV 56
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E V
Sbjct: 244 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV 300
>gi|392598136|gb|EIW87458.1| hypothetical protein CONPUDRAFT_116729 [Coniophora puteana
RWD-64-598 SS2]
Length = 406
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 78/170 (45%), Gaps = 22/170 (12%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI----VVMLSKPKP 84
V +LK+ I +EK S+ AE Q+LIY+G++L D+ ALS Y I S I V S P
Sbjct: 31 VLELKQAI-AEK-SDVEAERQRLIYSGRVLKDEDALSVYKIQSSHTIHMVKGVARSAGAP 88
Query: 85 TPAPYSGPSDPTQPAGQ------ESEATRPATATSDSMLKVFFERVNPY---GGESEDP- 134
+ AP +G + PT PA Q P T + + NP+ G DP
Sbjct: 89 STAPSAGVTQPT-PAQQLPTMQTGQNPHDPLTQLNSHLGFGAMGSFNPFAEMGLNPNDPN 147
Query: 135 -LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
+ + PQF Q + V N P VL QI SNP L + +E F
Sbjct: 148 MMQTMMNSPQFLQQMSSVMSN----PAVLDQIIASNPQLAAMAPQVREVF 193
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 17 QQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
+QTV+ LDV+ + V KEK+ EKG + + KL+Y+GK+L DD+ L Y + E
Sbjct: 10 KQTVT-LDVELTDSVLSTKEKLAQEKGCD--SSQIKLVYSGKVLQDDKNLESYKLKEGAS 66
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQE 102
I+ M++K K TP P T+ QE
Sbjct: 67 IIFMINKTKKTPTPVPETKSTTESTSQE 94
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q Q +R +Q NPEL+ +L+Q+ SNP + LIS + EAFVRM
Sbjct: 300 QMQLLRAALQSNPELIQPLLEQLAASNPQIASLISQDPEAFVRMF 344
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein
(ubiquitin-like protein) [Ustilago hordei]
Length = 424
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query: 22 HLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
HLD + + + +K KIQ E+G + E QK+I++GKIL+DD+ +++ NI E F+VVM+
Sbjct: 14 HLDAELTDTIGTIKSKIQKEQG--HPPELQKIIFSGKILTDDKTVADCNIKEKDFLVVMV 71
Query: 80 S 80
S
Sbjct: 72 S 72
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 15/107 (14%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+++ + V K+K+ EK + ++ KL+Y+GK+L DD+ L E + E I+ M+SK
Sbjct: 16 EVELTDTVSSAKDKLAQEK--DCVSSQIKLVYSGKVLQDDKTLEECKLKEGASIIFMISK 73
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYG 128
K TP P G S P +EAT A+ T DS +V P G
Sbjct: 74 AKETPTPVPGSSVPA------TEATASAS-TGDST------KVEPAG 107
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q Q +R +Q NPEL+ +L+Q+ SNP + LI + E F+R
Sbjct: 279 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPETFIRTF 323
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
++P LR P F +R + +NP ++P +LQQ+ Q+NPAL+ I N F+R+
Sbjct: 222 DNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLF 277
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +LK I SEK ++ +Q LIY+GKIL D + L YNI +S FI +M+ KP+ PA
Sbjct: 23 VAELKNLI-SEKHNQ-TPSWQTLIYSGKILEDKRTLESYNITDSGFIXMMIKKPREAPAT 80
Query: 89 YSGPS 93
PS
Sbjct: 81 TPAPS 85
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E++ +KEKI +EKG + A QKLIY+GKIL DD + Y+I+E FIV
Sbjct: 11 QKFVIEAEPSEKILDVKEKIATEKG--WPASQQKLIYSGKILQDDNTVESYSIEEKGFIV 68
Query: 77 VML 79
M+
Sbjct: 69 CMV 71
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E V
Sbjct: 259 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDV 315
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV-AG 193
L FLR QFQ +R +V NP++L +LQ++ + NP LL LI N + F+ +LNE AG
Sbjct: 243 LDFLRNNQQFQALREMVHTNPQILQPMLQELSKQNPQLLRLIQENNDEFLGLLNENFDAG 302
Query: 194 D 194
D
Sbjct: 303 D 303
Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + + +K+ I+ +G + Y Q LI+ GKIL D+ L E + E +
Sbjct: 11 THFEIRVQQNDTIMAVKKNIEEIQGKDNYPWGQQLLIHTGKILKDESTLEENQVSEDGSL 70
Query: 76 VVMLSK-------------PKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
VVMLSK P P P D Q +E++ P T TS
Sbjct: 71 VVMLSKSKASVSSGASSAQPSSIPVTRQAPPDAQI---QAAESSVPPTTTS 118
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
++P LR P F +R + +NP ++P +LQQ+ Q+NPAL+ I N F+R+
Sbjct: 223 DNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLF 278
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +LK I SEK ++ +Q LIY+GKIL D + L YNI +S FIV+M+ KP+
Sbjct: 23 VAELKNLI-SEKHNQ-TPSWQTLIYSGKILEDKRTLESYNITDSGFIVMMIKKPR 75
>gi|443893900|dbj|GAC71356.1| small Nuclear ribonucleoprotein splicing factor [Pseudozyma
antarctica T-34]
Length = 176
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 44/59 (74%), Gaps = 4/59 (6%)
Query: 22 HLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78
HLD + + + +K+KIQ+E+G + E+QK+I++GKIL+DD+ +++ NI E F+VVM
Sbjct: 14 HLDAELSDTIGAIKQKIQAEQGHK--PEWQKIIFSGKILTDDKTVADCNIKEKDFLVVM 70
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E V +K KI E+ + E QK+IY+GKIL DD ++ I E F+VVM+SKPK P
Sbjct: 22 ETVGDVKRKI--EESQTFPVEQQKIIYSGKILQDDTSIGSLKIKEKDFLVVMVSKPKAAP 79
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
L L PQ Q++R +VQQNP L+ +LQQ+ NPAL +LI+ + EA L
Sbjct: 252 LEALGNSPQLQRLRQMVQQNPALIGPLLQQVAAHNPALAQLINQHPEAVYEWLG 305
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD-QALSEYNIDESK 73
Q +Q ++ + ++Q+KEKIQ+E + A+ KLI GK++ DD ++L +Y I E
Sbjct: 9 QGKQLPIEVEESDTIRQVKEKIQAEH--QMQADLMKLIAYGKVMEDDNKSLKDYQIKEGD 66
Query: 74 FIVVMLSKPKPTP 86
F+VVM+SK KP P
Sbjct: 67 FLVVMISKAKPAP 79
Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
+P+GG + +P A L P F +R + Q+P+ + Q+ Q+ P L LI N AF+
Sbjct: 206 DPFGG-AGNPFAALAQNPNFALIRQRILQDPQFYQQFMSQLQQTQPQLFALIQQNPAAFM 264
Query: 185 RMLNEPVAGD 194
++ +AGD
Sbjct: 265 NLI---LAGD 271
>gi|164665688|gb|ABY66298.1| RAD23-like protein [Brassica napus]
Length = 357
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 65/229 (28%)
Query: 26 QEEVKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
++ V +K+ I++ G + Y A Q LI+ GK+L D+ L+ N+ E I V+ KP
Sbjct: 20 EDSVGDVKKNIETVMGVTAYPAAEQVLIHKGKVLKDETTLAANNVSEKSVIGVIKKKPAS 79
Query: 85 T-----PA----------PYSG----PSDPTQPA-------------------------- 99
T PA PYS P PT+PA
Sbjct: 80 TGTSTAPASLTALVHAAHPYSTAAETPVTPTEPAWDAASNGNYESISESNIQQILEMVRG 139
Query: 100 --GQESEATRPATATSD---SMLKVFF--------------ERVNPYGGESEDPLAFLRT 140
+E+ A A D ++ ++F + P + E L LR
Sbjct: 140 AWSREAVAYALCLAYDDLNKALEYIYFGIPVKSEDHYTTEEQTQEPAEADLEWSLDSLRH 199
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
P+F+ +R +VQ +P LL L + + NP LI N+ F+R+L E
Sbjct: 200 TPEFEHLRPLVQSDPSLLMDFLLMLKKQNPPFFRLIQDNKADFLRLLLE 248
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
NP+GG +A LR PQ Q +R +V NP+L ++QQ+ SNP ++ + N EA +
Sbjct: 249 NPFGGAGPIDMAALRDNPQVQHLRELVAANPQLAQPIIQQLAASNPQFAQMFAQNPEALM 308
Query: 185 RML 187
++L
Sbjct: 309 QLL 311
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V ++D + + V LK+KI +G + E QK+IY+GK+L D++++
Sbjct: 3 ITVKTLQQKVFNIDAEGSDTVGDLKKKISESQG--HSIESQKIIYSGKVLPDNKSVESCE 60
Query: 69 IDESKFIVVMLSKP 82
I E F+V+M KP
Sbjct: 61 IKEKDFLVLM-PKP 73
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V +KEKI EKG E A QKLIY+GKIL D L Y+I+E FIV
Sbjct: 11 QKFVLEAEPTELVSDVKEKIFKEKGWE--ASQQKLIYSGKILQDANTLESYHIEEKGFIV 68
Query: 77 VMLS 80
M++
Sbjct: 69 CMIT 72
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 13/85 (15%)
Query: 3 MLAHDISDITQNQWQ----QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKIL 58
ML I I Q Q++ T + LDV+++V+ L+ SE +A +QKLI+AGKIL
Sbjct: 1 MLKVQIKTIQQQQFEVEVPDTATVLDVKKKVEALR--------SENVA-WQKLIFAGKIL 51
Query: 59 SDDQALSEYNIDESKFIVVMLSKPK 83
+DD ++ NI ++F+V+M+ KPK
Sbjct: 52 ADDAKINTLNIKPTEFLVLMVRKPK 76
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GG E +LR PQF Q++ +VQ+NP+LL +LQQ+GQ NP +L++I +Q F+ +L
Sbjct: 242 GGHFE----WLRQHPQFNQIKAMVQRNPQLLGPLLQQLGQLNPQILQMIGQHQAEFMALL 297
Query: 188 NEPV 191
NEP+
Sbjct: 298 NEPI 301
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LA LR P F +R V Q+P L +LQQ+G++NP L+++I+ +Q+AF+ ML
Sbjct: 241 LAALRNNPAFGMLRAAVAQDPRALVPLLQQLGRTNPELVQVINQHQQAFLAML 293
>gi|281207509|gb|EFA81692.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 124
Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
LR P F +R +Q+NP ++P +LQQ Q+NP L+ I+ N + F+R+ EP
Sbjct: 16 LRNNPHFPMLRETIQRNPAVIPELLQQFSQTNPGLVRQITENPQEFLRLFQEP 68
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus siliculosus]
Length = 466
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
R PQF +++ +VQ++P L ++LQ IG+ +P LL I NQ F+ ++NEP+
Sbjct: 181 FRGHPQFNELKRLVQRDPTQLSSILQMIGRQSPNLLARIHENQGDFIALMNEPI 234
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQ 62
M+ + I ++Q V EVK + E E+ +E+ A KLI++G+IL D+
Sbjct: 1 MVKLTVKTIKGKKFQIEVEQTQTVREVKGVIE----EQNAEFPAAQLKLIHSGQILKDEC 56
Query: 63 ALSEYNIDESKFIVVMLSK 81
L+EY I E +F+V M++K
Sbjct: 57 TLAEYKIKEEEFLVCMVTK 75
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 33 KEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT--PAPYS 90
K+K+ +E+G E AE KL+Y+GK+L DD+ +++ + E I+ M++K KP P +
Sbjct: 17 KQKLAAEQGCE--AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSDAKPET 74
Query: 91 GPSDPTQPAGQESEATRPATATS 113
S+ E++AT +T+T+
Sbjct: 75 KTSETAGAGKSETKATEASTSTA 97
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+RT +Q NPEL+ +L+Q+ SNP + LI + EAFVR
Sbjct: 253 LRTALQTNPELIQPLLEQLAASNPQVATLIQQDPEAFVRTF 293
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ QN++ V D+ + +K++I EKG + A+ QKLIY+GKIL D++ + Y
Sbjct: 5 FKDLKQNKFTLDVEPTDL---ISTVKQRISEEKG--WDAKEQKLIYSGKILKDEETVESY 59
Query: 68 NIDESKFIVVML 79
I+E F+V M+
Sbjct: 60 KIEEKGFVVCMI 71
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQQ+R VVQQ P++L +LQQ+G NP L +LI++N + F+ +L E V D
Sbjct: 270 LDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDDD 329
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ VQ +V LK+KIQ + + E QKLIY+GKIL+D ++ I E F+VVM+
Sbjct: 4 ITFKTVQNKVADLKKKIQETQ--TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMV 61
Query: 80 SKPK 83
S+PK
Sbjct: 62 SRPK 65
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
Q +R +VQQNP ++ +LQQI +P L +LI+ N EA
Sbjct: 280 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEAL 320
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 33 KEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT--PAPYS 90
K+K+ +E+G E AE KL+Y+GK+L DD+ +++ + E I+ M++K KP P +
Sbjct: 17 KQKLAAEQGCE--AEQLKLVYSGKVLQDDKTITDSKVKEGDSIIFMVAKKKPVSDAKPET 74
Query: 91 GPSDPTQPAGQESEATRPATATS 113
S+ E++AT +T+T+
Sbjct: 75 KTSETAGAGKSETKATEASTSTA 97
Score = 42.4 bits (98), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+RT +Q NPEL+ +L+Q+ SNP + LI + EAFVR
Sbjct: 253 LRTALQTNPELIQPLLEQLAASNPQVATLIQQDPEAFVRTF 293
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+++ + V KEK+ EK + KL+Y+GK+L DD+ L E + E I+ M+SK
Sbjct: 17 VELNDSVSSAKEKLAKEK--DCTPSQIKLVYSGKVLQDDKTLEECKLKEGASIIFMISKA 74
Query: 83 K--PTPAPY-------------SGPSDPTQPAGQESEATRPATATSDSMLKV 119
K PTPAP +G S +PAG S T PA TS + +
Sbjct: 75 KETPTPAPVSSTPAAEAAASASTGDSTKVEPAG--STPTVPAAPTSGAATNI 124
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q Q +R +Q NPEL+ +L+Q+ SNP + LI + E F+R
Sbjct: 276 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPETFIRTF 320
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ VQ +V LK+KIQ + + E QKLIY+GKIL+D ++ I E F+VVM+
Sbjct: 4 ITFKTVQNKVADLKKKIQETQ--TFPVENQKLIYSGKILNDASSVESLKIKEKDFLVVMV 61
Query: 80 SKPK 83
S+PK
Sbjct: 62 SRPK 65
>gi|328865496|gb|EGG13882.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 130
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G+ +P LR PQF +R +Q+NP+++ +LQQ QSNP L+ I+ N + F+R+
Sbjct: 8 GDQPNPFEALRNHPQFAVLREAIQRNPQVITELLQQYSQSNPQLVRQITENPQEFLRLFQ 67
Query: 189 E 189
+
Sbjct: 68 D 68
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL
8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL
8126]
Length = 389
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
E V LK+KI E+G + + QKLIY+GKIL D+ + Y I+E F+V +++KPK
Sbjct: 21 ELVSALKQKISDERG--WDPKLQKLIYSGKILKDEDTIESYKIEEKGFVVCVVNKPK 75
Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N E F+++L+E +GD
Sbjct: 266 LEFLRHNAQFQQLRQVVQQQPQMLEPILQQLGAGNPHLAQLIAQNPEQFLQLLSE--SGD 323
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ QN++ V D+ + +K++I EKG + A+ QKLIY+GKIL D++ + Y
Sbjct: 5 FKDLKQNKFTLEVEPTDL---ISTVKQRISEEKG--WDAKEQKLIYSGKILKDEETVESY 59
Query: 68 NIDESKFIVVML 79
I+E F+V M+
Sbjct: 60 KIEEKGFVVCMI 71
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQQ+R VVQQ P++L +LQQ+G NP L +LI++N + F+ +L E V D
Sbjct: 270 LDFLRNNAQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIANNPDQFLSLLGEDVDDD 329
>gi|353242287|emb|CCA73944.1| hypothetical protein PIIN_07897 [Piriformospora indica DSM 11827]
Length = 419
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 18 QTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T H+ + + V +LK+ I ++ S+ AE Q+LIY+GK+L DD LS Y I S I
Sbjct: 14 ETKLHITIANDKTVFELKQMIAAK--SDVEAERQRLIYSGKVLKDDDPLSTYKIQSSHTI 71
Query: 76 VVMLSKPKPTPAPYSG--------PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY 127
++ P+ P+ + PS P+ GQ + P T + M NP+
Sbjct: 72 HMVKGAPRNQPSTSTSGSSGSALPPSLPSMATGQNP--SDPLTLLNGPMGHGLMAGFNPF 129
Query: 128 GGESEDP-----LAFLRTQPQFQQMRTVVQQNPELLPTVL 162
G +P + + P+F Q + + +P++L +L
Sbjct: 130 QGMGVNPNDPNMMQSMMDSPEFYQRMSQIMSDPQILDQIL 169
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V ++ + + +K+KI E+G + + QKLIY+GKIL D++ + Y I+E F+V
Sbjct: 11 QKFVIEVEPTDLISAVKQKISEERG--WDPKLQKLIYSGKILKDEETVESYKIEEKGFVV 68
Query: 77 VMLSKPK 83
+++KPK
Sbjct: 69 CVVNKPK 75
Score = 36.2 bits (82), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR QFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N E F+ +L E
Sbjct: 280 LDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALLGE 334
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PQF ++R++VQ NPE LPTV+QQ+ +P ++ LI + E F+R++ P
Sbjct: 241 PQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNP 289
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 70/236 (29%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY-NIDESK 73
Q Q+T + V E+++QL + A+ QKLI++GKIL + + +Y +I +
Sbjct: 16 QVQETSTVEAVMEQIEQLLPNMP--------AKTQKLIHSGKILKREMQIKDYPDIKDGD 67
Query: 74 FIVVMLSK------PKPTP-----APYSGPSDPTQPAGQESEATRPATA---------TS 113
++V+ SK P+P P S P P E P++
Sbjct: 68 KVIVIASKVVESSAPQPVAKVEEKTPESTPVQQEAPEKSEPVYDNPSSKLLIGQELQDNV 127
Query: 114 DSMLKVFFERV-----------NP--------------------------YGGE----SE 132
+ + ++ FER NP + G+ +E
Sbjct: 128 NRICEMGFERAMVERAMAAAFNNPERAVEFLSTGHIPEPEAMGMDLPSMEHSGDMPRTNE 187
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
D + L++ P F+Q+R VVQ +P++L +L IG++NP LL+ I +Q+ F+ +++
Sbjct: 188 DVIQMLQSHPMFEQLRQVVQSDPQMLQQLLDNIGRNNPELLQSIIEHQDEFMDLIS 243
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78
V ++ Q+ V +K+ I++ +G++ Y A Q LI+ GK+L+D L E + E+ F+V+M
Sbjct: 14 VLQVNPQDTVAVVKKNIETAQGADVYPAAQQMLIHQGKVLNDATTLEENKVVENNFVVIM 73
Query: 79 LSKPKPTPAPYSGPSD-PTQP 98
LSK K + S PS+ TQP
Sbjct: 74 LSKNKVSSGASSAPSNLGTQP 94
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 40/56 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
L LR + +FQ +R +++NP++L ++Q++GQ NP L+++I +QE + ++NEP
Sbjct: 250 LDSLRNREEFQALRETMRENPQILQPMIQELGQQNPQLMQIIQDHQEDILDLMNEP 305
>gi|393247027|gb|EJD54535.1| hypothetical protein AURDEDRAFT_148267 [Auricularia delicata
TFB-10046 SS5]
Length = 399
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +LK+ I S+ AE Q+LIY+G++L DD L++Y I I ++ +PTP
Sbjct: 32 KSVFELKQAIAER--SDVAAESQRLIYSGRVLKDDDPLTQYKIQSGHTIHMVKGIARPTP 89
Query: 87 APYSGPSD------PTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDP-----L 135
SG + PT AGQ P T + M NP+ G +P +
Sbjct: 90 GSASGSAGAAPQQLPTMAAGQNP--ADPLTQLNGPMGHGVMAGFNPFAGLGVNPTDPNMM 147
Query: 136 AFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
A L P+F + + N P V+ QI +NP + +E F
Sbjct: 148 ATLMESPEFLTQMSRMMSN----PAVVDQIIATNPQFAAMGPQIREMF 191
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PQF ++R++VQ NPE LPTV+QQ+ +P ++ LI + E F+R++ P
Sbjct: 241 PQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNP 289
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PQF ++R++VQ NPE LPTV+QQ+ +P ++ LI + E F+R++ P
Sbjct: 241 PQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNP 289
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D+ + V KEK+ SEK E K +Y+GK+L D++ L + I E I+ M+SK
Sbjct: 16 EVDLSDTVLATKEKLASEKDCEV--SQLKFVYSGKVLQDEKTLESFKIKEGDSIIFMISK 73
Query: 82 P-KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE 130
K +PAP GP+ + ++ AT +T S + N G E
Sbjct: 74 AKKASPAP--GPAKAEEKTSTDASATTESTNASSTPAAASGASTNQQGSE 121
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
Q + +RT +Q NPEL+ +L+Q+ SNP + LI + E F+R
Sbjct: 251 QMRLLRTALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIR 293
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like,
partial [Oryctolagus cuniculus]
Length = 365
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T Q H+D+ + V+ LKEKI++E+G + + Q+L+YAG++L DD L +
Sbjct: 3 LTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDC 62
Query: 68 NIDESKFIVVMLSKPK 83
I E + V++++P+
Sbjct: 63 QIHEHHAVTVLVARPE 78
Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G PL L P+FQ +R ++Q P LLP VLQ+I +P L Q+ V ML
Sbjct: 281 GSGGHPLDVLWNAPEFQLLRQILQYFPSLLPGVLQRICPQDPLLRRQFRQYQDYLVHMLT 340
Query: 189 EPV 191
P+
Sbjct: 341 APM 343
>gi|449539871|gb|EMD30875.1| hypothetical protein CERSUDRAFT_89638 [Ceriporiopsis subvermispora
B]
Length = 415
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V +LK+ I + S+ A+ Q+LIY+G++L D+ AL+ Y I S I ++
Sbjct: 32 ISTDKTVAELKQAIADK--SDVPADRQRLIYSGRVLKDEDALATYKIQSSHTIHMVKGAA 89
Query: 83 KPTPA---PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGESEDP-- 134
+ A P + PT AGQ P T + M +NP+ G DP
Sbjct: 90 RSATASTQPAAAQPLPTMQAGQNIH--DPLTQLNSHMGYGLMAGLNPFADMGLNPNDPNM 147
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
+ + PQF Q + V N P VL Q+ SNP L + ++ F
Sbjct: 148 MQSMLNSPQFLQQMSSVMSN----PAVLDQLIASNPQLAAMGPQVRQVF 192
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
I D+ QN++ D+ + +K+KI +G + + QKLIY+GKIL D+ + Y
Sbjct: 5 IKDLKQNKFTVEAEPTDL---ISTVKQKIADSQG--WDPKSQKLIYSGKILKDEDTVESY 59
Query: 68 NIDESKFIVVMLSKPKPTP 86
I+E F+V ++ KPK P
Sbjct: 60 KIEEKGFVVCVVQKPKAEP 78
>gi|154277740|ref|XP_001539705.1| deubiquitination-protection protein dph1 [Ajellomyces capsulatus
NAm1]
gi|150413290|gb|EDN08673.1| deubiquitination-protection protein dph1 [Ajellomyces capsulatus
NAm1]
Length = 325
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 38/199 (19%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---L 79
LD + LK K+ ++ AE Q+LIY+G++L D L+ +N+ + I ++ +
Sbjct: 29 LDPSTTIADLKAKLAGSDYADVPAERQRLIYSGRVLKDGDTLATHNVKDGHSIHLVKSAI 88
Query: 80 SKPKPTPAPYSG----PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPL 135
S +P P P G SD T+ G + T A T ++ L Y G ++ P
Sbjct: 89 SNQRPAP-PSQGSSTTASDRTRTPGLPNVPTNIAAGTGNNPLAGLTGAR--YAGFAQLPG 145
Query: 136 AFLRT-------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELI 176
A + PQFQ QNP+L+ ++QQ NP LLE+
Sbjct: 146 AGMFGPDGGMGPPPDSEEIIRMLENPQFQSSMNEALQNPQLIDMMIQQ----NPMLLEMG 201
Query: 177 SHNQEA-----FVRMLNEP 190
++ F RML +P
Sbjct: 202 PGVRQMMQSPLFRRMLTDP 220
>gi|225560965|gb|EEH09246.1| deubiquitination-protection protein dph1 [Ajellomyces capsulatus
G186AR]
Length = 473
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 38/199 (19%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---L 79
LD + LK K+ ++ AE Q+LIY+G++L D L+ +N+ + I ++ +
Sbjct: 29 LDPSTTIADLKAKLAGSDYADVPAERQRLIYSGRVLKDGDTLATHNVKDGHSIHLVKSAI 88
Query: 80 SKPKPTPAPYSGPS----DPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPL 135
S +P P P G S D T+ +G + T A T ++ L Y G ++ P
Sbjct: 89 SNQRPAP-PSQGSSTTAGDRTRTSGLPNVPTNIAAGTGNNPLAGLTGAR--YAGFAQLPG 145
Query: 136 AFLRT-------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELI 176
A + PQFQ QNP+L+ ++QQ NP LLE+
Sbjct: 146 AGMFGPDGGMGPPPDSEEIIRMLENPQFQSSMNEALQNPQLIDMMIQQ----NPMLLEMG 201
Query: 177 SHNQEA-----FVRMLNEP 190
++ F RML +P
Sbjct: 202 PGVRQMMQSPLFRRMLTDP 220
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 406
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT Q + +D Q+ V LK+KIQ + + E QKLIY+GKIL+D ++
Sbjct: 4 ITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ--TFPVENQKLIYSGKILNDASSVESLK 61
Query: 69 IDESKFIVVMLSKPK 83
I E F+VVM+S+PK
Sbjct: 62 IKEKDFLVVMVSRPK 76
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
Q +R +VQQNP ++ +LQQI +P L +LI+ N EA
Sbjct: 292 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEAL 332
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
P LR P F +R + Q+P ++PT+LQQ+ QSNP L+ IS F+R+
Sbjct: 226 PFEALRNHPYFPMLRQAIAQDPNIIPTLLQQLAQSNPELVRQISERPNDFIRIF 279
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
LD + V LK I EK ++ + +Q LIY+GKIL D L Y I E FIV+M+ K
Sbjct: 16 ELDSDKTVLDLKNSI-FEKYNQ-IPSWQTLIYSGKILEDKNTLESYKISEQGFIVMMIKK 73
Query: 82 PKPTPA 87
P+ PA
Sbjct: 74 PREAPA 79
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LDV+ + + +K++I E+G + ++QKLIY+GKIL D+ + Y I+E F+V +++
Sbjct: 15 LDVEPTDLISAVKQRISEERG--WDPKHQKLIYSGKILKDEDTVESYKIEEKGFVVCVVN 72
Query: 81 KPK 83
KPK
Sbjct: 73 KPK 75
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q H+D+ + V+ LKEKI++E+G + + Q+L+YAG++L DD L + I E
Sbjct: 130 QLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDCQIHEHHA 189
Query: 75 IVVMLSKPK 83
+ V++++P+
Sbjct: 190 VTVLVARPE 198
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G PL LR P+F+++R ++Q P LLP VLQ++ +P L + + QE V ML
Sbjct: 386 GSGGHPLDVLRNLPEFEELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLT 445
>gi|327356792|gb|EGE85649.1| deubiquitination-protection protein dph1 [Ajellomyces dermatitidis
ATCC 18188]
Length = 469
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 34/194 (17%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
LD + LK K+ ++ AE Q+LIY+G++L D L+ +N+ + I + P
Sbjct: 29 LDPSTTIADLKAKLAGPDYADVPAERQRLIYSGRVLKDGDTLATHNVKDGHAIHL----P 84
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF-------FERVNPYGG------ 129
P+ + D T+ G + T A T ++ L F ++ P G
Sbjct: 85 PPSQGASAAAGDRTRSPGVANVPTNIAAGTGNNPLAGLTGARYAGFAQL-PGAGMFGPDG 143
Query: 130 ------ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQE-- 181
+SE+ ++ L PQFQ QNP+LL ++QQ NP L E+ ++
Sbjct: 144 GMGPPPDSEELISMLE-NPQFQSTMNEALQNPQLLDLMIQQ----NPMLREMGPGVRQMM 198
Query: 182 ---AFVRMLNEPVA 192
AF R+L +P A
Sbjct: 199 QSPAFRRILTDPNA 212
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
PQF ++R++VQ NPE LPTV+QQ+ +P ++ LI + E F+R++ P
Sbjct: 180 PQFGEIRSIVQANPESLPTVVQQLRIHHPEVIGLIQQDLEGFLRIMGNP 228
>gi|407036726|gb|EKE38298.1| ubiquitin family protein [Entamoeba nuttalli P19]
Length = 310
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 18/168 (10%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +KEKI++++ +AE+ +LI+AG++L DD+ LS I+ + + ++ S+ +P
Sbjct: 28 VSGIKEKIRNQQPD--VAEF-RLIFAGRVLKDDEVLSTLGINNNVTLHLVRSR-----SP 79
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQ----- 143
S PS PT P+ Q + ++PA T S + F++ P G P
Sbjct: 80 TSVPSQPT-PSSQSTPVSQPAQPTFQSNEQSTFQQ--PQMGNMPLPNFGGMGGFNGMGGM 136
Query: 144 -FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
QQ ++QQNP++L + + Q+ A+ ++ N + +M+N P
Sbjct: 137 DMQQTMNMLQQNPQMLEQAINFLTQNPQAMRAMLMMNPQT-AQMMNNP 183
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea
MF3/22]
Length = 406
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 24 DVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
DV+EE V LK+KI + ++ E QKLIY+GKIL DD + YNI ++ FIV+M+S
Sbjct: 17 DVEEEDTVASLKQKIAGQ--FQHPVELQKLIYSGKILQDDAQIKSYNIKQTDFIVLMVS 73
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
Q Q R V QNP LL ++QQI QSNP L + + N EA +++
Sbjct: 287 QLGQFRNTVMQNPALLQPMIQQIAQSNPNLAQYLEQNPEALLQL 330
>gi|254586057|ref|XP_002498596.1| ZYRO0G14124p [Zygosaccharomyces rouxii]
gi|238941490|emb|CAR29663.1| ZYRO0G14124p [Zygosaccharomyces rouxii]
Length = 369
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN+W+ TV D + V KE+I K SE A Q+LIY+GKIL DDQ L YN+ +
Sbjct: 12 QNKWEVTV---DPESTVSTFKEEI--SKVSEIPASSQRLIYSGKILKDDQTLQFYNLQDG 66
Query: 73 KFIVVMLSKPKP 84
+ ++ S P
Sbjct: 67 HSVHLVKSSKAP 78
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T Q H+D+ + V+ LKEKI++E+G + + Q+L+YAG++L DD L +
Sbjct: 3 LTLEAGPQLTFHIDIDPGQTVRALKEKIEAEQGRDAFPVAGQQLLYAGRVLPDDAVLRDC 62
Query: 68 NIDESKFIVVMLSKPK 83
I E + V++++P+
Sbjct: 63 QIHEHHAVTVLVARPE 78
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
G PL LR P+F+++R ++Q P LLP VLQ++ +P L + + QE V ML
Sbjct: 258 GSGGHPLDVLRNLPEFEELRRIIQHFPSLLPGVLQRLCPQDPQLEDQLRQYQEYLVHMLT 317
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 24/93 (25%)
Query: 10 DITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG-------------- 55
D+ Q ++ V D+ + +KE+I +EKG + ++QKLIY+G
Sbjct: 7 DLKQQKFTLEVEPTDL---ISAVKERISTEKG--WDPKHQKLIYSGADEQNPAPTAPPFL 61
Query: 56 -----KILSDDQALSEYNIDESKFIVVMLSKPK 83
KIL D++ ++ YNI+E F+V M++KPK
Sbjct: 62 TNFLGKILKDEETVASYNIEEKGFVVCMVNKPK 94
Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLRT PQFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N +AF+++L E D
Sbjct: 274 LDFLRTNPQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIASNPDAFLQLLGEDAEDD 333
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ ++V + V + KE + S+K + K +Y+GK+L+DDQ+L Y I E I+
Sbjct: 11 QKLTIDVEVDDTVLKTKETVASQKSCD--VSQLKFVYSGKVLADDQSLGSYKIKEGDSII 68
Query: 77 VMLSKPKPTPAPYSG-PSDPTQPAGQESEATRPATAT 112
M+SK K P + P+ T ES A+ P T
Sbjct: 69 YMISKAKKPVVPVAEPPTAATTGDSSESAASEPVAPT 105
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 129 GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
G++ DP+ L Q Q +R +Q NPEL+ +L+QI +SNP + +LI + E F+
Sbjct: 227 GDASDPVGELDDAAQLQLLREAIQTNPELIHELLEQISRSNPHIAQLIQQDPEGFI 282
>gi|212531301|ref|XP_002145807.1| ubiquitin-like protein DskB, putative [Talaromyces marneffei ATCC
18224]
gi|210071171|gb|EEA25260.1| ubiquitin-like protein DskB, putative [Talaromyces marneffei ATCC
18224]
Length = 454
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 82/195 (42%), Gaps = 40/195 (20%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS-------K 81
V LKEK+ S + ++ AE Q+LIY+G++L D++ L+ Y I + I ++ S
Sbjct: 35 VSDLKEKLSSSEYADTPAERQRLIYSGRVLKDNETLASYKIKDGHTIHLVKSAASNQRQN 94
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT- 140
P P PA G + T P+ T A T ++ L Y G ++ P A +
Sbjct: 95 PPPQPA---GTAAGTTPSAIPGVPTNIAAGTGNNPLAGLTGAR--YAGFAQLPGAGMFGP 149
Query: 141 ------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEA 182
PQ Q QNP L+ ++QQ NP L E+ ++
Sbjct: 150 DGGMGPPPDPDQMLSMLENPQVQATMNEALQNPALIDLMIQQ----NPMLREMGPGVRQM 205
Query: 183 -----FVRMLNEPVA 192
F RML +P A
Sbjct: 206 MQSPEFRRMLTDPAA 220
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLA-EYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
D+ + V+ +KE I +EK S+ L + Q+LI++G++L DD L N E+ F+VVM K
Sbjct: 18 DISKPVRLIKEAIYAEKKSDDLHPDAQRLIFSGRLLKDDDVLESLNFKENDFLVVMGGK- 76
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
PA +D A +SE T +++T++
Sbjct: 77 --RPAASKPAADKKDTASSKSEETPASSSTTE 106
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
E + ++K+KI EKG E A QKLIY+GKIL D + Y+I+E FIV M+
Sbjct: 21 ELISEVKDKISKEKGWE--ASQQKLIYSGKILQDANTVESYHIEEKGFIVCMV 71
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ +D + + V LK KI+ + + E+QKLIY+GK+L+DD+ +
Sbjct: 3 ITVKTLQQKQFQIDAEPSDTVADLKSKIKDTQ--NHPVEHQKLIYSGKVLADDKTIESCQ 60
Query: 69 IDESKFIVVMLSKPKPTPAPYSGPSD 94
I E F+V+M+SKPKP PA +GPS+
Sbjct: 61 IKEKDFLVLMVSKPKPAPAAAAGPSN 86
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
LR MR +VQQNP LL ++QQ Q +P L + ++ N E ++L + +A
Sbjct: 255 LRGVESLAGMRELVQQNPALLQPLIQQFAQQDPQLAQAVAANPEMLFQILADGMA 309
>gi|336268456|ref|XP_003348993.1| hypothetical protein SMAC_02014 [Sordaria macrospora k-hell]
Length = 84
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 36 IQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT-PAP 88
I E+G + E QKLIY+GKIL D++ + Y I+E F+V +++KPK T P P
Sbjct: 28 ISEERG--WAPELQKLIYSGKILKDEETVESYKIEEKGFVVCVVNKPKTTAPKP 79
>gi|134077535|emb|CAK96679.1| unnamed protein product [Aspergillus niger]
Length = 361
Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 78/202 (38%), Gaps = 55/202 (27%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LKEK+ S + ++ AE Q+LIY+G++L D++ L+ YNI + I ++ S P P
Sbjct: 35 VSDLKEKLASSEYADTPAERQRLIYSGRVLKDNETLATYNIKDGHTIHLVKSAPSNRP-- 92
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-------- 140
P+G + + A + + N G +PLA L
Sbjct: 93 ---------PSGAATTTSTSAPGGAAATPAAAGVPTNLAAGTGNNPLAGLTGARYAGFAQ 143
Query: 141 ---------------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALL 173
PQFQ QNP ++ ++QQ NP L
Sbjct: 144 LPGAGMFGPDGGMGPPPDTETMLNMLENPQFQSTINEALQNPAMIDMMIQQ----NPMLR 199
Query: 174 ELISHNQEA-----FVRMLNEP 190
E+ ++ F RML +P
Sbjct: 200 EMGPGVRQMMQSPEFRRMLTDP 221
>gi|261196133|ref|XP_002624470.1| deubiquitination-protection protein dph1 [Ajellomyces dermatitidis
SLH14081]
gi|239587603|gb|EEQ70246.1| deubiquitination-protection protein dph1 [Ajellomyces dermatitidis
SLH14081]
gi|239614559|gb|EEQ91546.1| deubiquitination-protection protein dph1 [Ajellomyces dermatitidis
ER-3]
Length = 480
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 90/201 (44%), Gaps = 38/201 (18%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
LD + LK K+ ++ AE Q+LIY+G++L D L+ +N+ + I ++ S
Sbjct: 29 LDPSTTIADLKAKLAGPDYADVPAERQRLIYSGRVLKDGDTLATHNVKDGHAIHLVRSAA 88
Query: 83 ---KPTPAPYSGPS----DPTQPAGQESEATRPATATSDSMLKVF-------FERVNPYG 128
+P P P G S D T+ G + T A T ++ L F ++ P
Sbjct: 89 SNQRPAP-PSQGASAAAGDRTRSPGVANVPTNIAAGTGNNPLAGLTGARYAGFAQL-PGA 146
Query: 129 G------------ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELI 176
G +SE+ ++ L PQFQ QNP+LL ++QQ NP L E+
Sbjct: 147 GMFGPDGGMGPPPDSEELISMLE-NPQFQSTMNEALQNPQLLDLMIQQ----NPMLREMG 201
Query: 177 SHNQE-----AFVRMLNEPVA 192
++ AF R+L +P A
Sbjct: 202 PGVRQMMQSPAFRRILTDPNA 222
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E + +K KI+ EKG E A QKLIY+GKIL D + Y I+E FIV
Sbjct: 11 QKFVIEAEPTELISDVKAKIEKEKGWE--AAQQKLIYSGKILQDANTVESYKIEEKGFIV 68
Query: 77 VML 79
M+
Sbjct: 69 CMV 71
>gi|317030653|ref|XP_001393011.2| ubiquitin-like protein DskB [Aspergillus niger CBS 513.88]
Length = 466
Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 55/208 (26%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
L V LKEK+ S + ++ AE Q+LIY+G++L D++ L+ YNI + I ++ S P
Sbjct: 29 LPSSTSVSDLKEKLASSEYADTPAERQRLIYSGRVLKDNETLATYNIKDGHTIHLVKSAP 88
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-- 140
P P+G + + A + + N G +PLA L
Sbjct: 89 SNRP-----------PSGAATTTSTSAPGGAAATPAAAGVPTNLAAGTGNNPLAGLTGAR 137
Query: 141 ---------------------------------QPQFQQMRTVVQQNPELLPTVLQQIGQ 167
PQFQ QNP ++ ++QQ
Sbjct: 138 YAGFAQLPGAGMFGPDGGMGPPPDTETMLNMLENPQFQSTINEALQNPAMIDMMIQQ--- 194
Query: 168 SNPALLELISHNQEA-----FVRMLNEP 190
NP L E+ ++ F RML +P
Sbjct: 195 -NPMLREMGPGVRQMMQSPEFRRMLTDP 221
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDR 195
L PQFQQ+ ++QNP LL ++ Q+ QSNP L L+ N +AF+++L + G++
Sbjct: 210 LAQNPQFQQIAMAIRQNPALLQPIMLQLAQSNPQLATLLQQNPQAFLQLLMQATGGEQ 267
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ LD + E V LK+KI E+G + QKLIY+G++L DD+ + N
Sbjct: 3 ITVKTLQQKTFQLDAEPSETVADLKKKI--EEGHGHPVATQKLIYSGQVLGDDKTVESCN 60
Query: 69 IDESKFIVVML 79
I E F+V+M+
Sbjct: 61 IKEKGFLVLMV 71
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
L++QPQ Q +R ++QQNP L+ VL Q+ QSNP L EL + + EA + +
Sbjct: 297 LQSQPQIQHLRQLLQQNPALIQPVLHQLAQSNPELAELFTQHPEAIAQAIG 347
>gi|449442993|ref|XP_004139265.1| PREDICTED: uncharacterized protein LOC101210096 [Cucumis sativus]
gi|449493679|ref|XP_004159408.1| PREDICTED: uncharacterized protein LOC101228995 [Cucumis sativus]
Length = 709
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I S G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 38 VDKQMPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQP 95
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNP 126
P PS E+ RP T + S +V RV P
Sbjct: 96 LP-------PS--------ETLPNRPETDPNSSTSRVHSNRVAP 124
>gi|396477678|ref|XP_003840335.1| predicted protein [Leptosphaeria maculans JN3]
gi|312216907|emb|CBX96856.1| predicted protein [Leptosphaeria maculans JN3]
Length = 72
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
LK KIQ++KG E QKLIY+GKIL D + Y I+E FIV M+SK
Sbjct: 23 LKAKIQADKGWE--VPQQKLIYSGKILQDAHTVESYKIEEKGFIVCMVSK 70
>gi|401626177|gb|EJS44135.1| dsk2p [Saccharomyces arboricola H-6]
Length = 372
Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ TV+ + V+Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVTVA---PESTVQQFKEAISEANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+FQ +R++VQ NP++L VLQ++G+ N +L LI + F++++N+PV G
Sbjct: 170 EFQALRSMVQSNPQILQPVLQELGKQNLSLSRLIQEHHGEFLQLINDPVEG 220
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR QFQ +R +V NP++L +LQ++G+ +P LL LI N + F + NE
Sbjct: 212 LDFLRNNQQFQALREMVHTNPQILQPMLQELGRVDPQLLRLIQENSDEFFGLPNE 266
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRN 197
LR P F +R NP+ +P +L+ IG+S+P+LLE I NQ F+ L + GD N
Sbjct: 232 LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL-QNYDGDNNN 290
>gi|350630002|gb|EHA18375.1| hypothetical protein ASPNIDRAFT_198287 [Aspergillus niger ATCC
1015]
Length = 423
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 55/208 (26%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
L V LKEK+ S + ++ AE Q+LIY+G++L D++ L+ YNI + I ++ S P
Sbjct: 29 LPSSTSVSDLKEKLASSEYADTPAERQRLIYSGRVLKDNETLATYNIKDGHTIHLVKSAP 88
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-- 140
P P+G + + A + + N G +PLA L
Sbjct: 89 SNRP-----------PSGAATTTSTSAPGGAAATPAAAGVPTNLAAGTGNNPLAGLTGAR 137
Query: 141 ---------------------------------QPQFQQMRTVVQQNPELLPTVLQQIGQ 167
PQFQ QNP ++ ++QQ
Sbjct: 138 YAGFAQLPGAGMFGPDGGMGPPPDTETMLNMLENPQFQSTINEALQNPAMIDMMIQQ--- 194
Query: 168 SNPALLELISHNQEA-----FVRMLNEP 190
NP L E+ ++ F RML +P
Sbjct: 195 -NPMLREMGPGVRQMMQSPEFRRMLTDP 221
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
R+ P F +R V NP+ +P +L+ IG+++P+ LE I NQ F+R +
Sbjct: 263 FRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAI 312
>gi|365991299|ref|XP_003672478.1| hypothetical protein NDAI_0K00440 [Naumovozyma dairenensis CBS
421]
gi|343771254|emb|CCD27235.1| hypothetical protein NDAI_0K00440 [Naumovozyma dairenensis CBS
421]
Length = 404
Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN WQ ++ D + LK++I K SE A Q+LIY+GKIL DDQ + YNI +
Sbjct: 12 QNNWQVSI---DTTASIATLKDEI--AKVSEIPATNQRLIYSGKILKDDQNVDFYNIQDG 66
Query: 73 KFIVVMLSKPK 83
+ ++ S K
Sbjct: 67 HSVHLVRSGKK 77
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
R+ P F +R V NP+ +P +L+ IG+++P+ LE I NQ F+R +
Sbjct: 260 FRSSPFFNILRDVALSNPQRIPEILEMIGRTDPSFLEFIRENQGEFIRAI 309
>gi|389741981|gb|EIM83168.1| hypothetical protein STEHIDRAFT_101265 [Stereum hirsutum FP-91666
SS1]
Length = 401
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 80/176 (45%), Gaps = 20/176 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V++LK+ I + S+ A+ Q+LIY+G++L DD ALS Y I S I ++ +
Sbjct: 35 VRELKQAIADK--SDVEADRQRLIYSGRVLKDDDALSIYKIQSSHTIHMVKGAARSANPS 92
Query: 89 YSGPSD------PTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGESEDP--LAF 137
S S PT AGQ P T + + +NP+ G DP L
Sbjct: 93 SSTSSTATPQQLPTMQAGQNVH--DPLTQLNSHLGYGAMAGLNPFADMGVNPNDPNMLQG 150
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQ---QIGQSNPALLELISHNQEAFVRMLNEP 190
+ P+F Q + V NP +L ++ Q+G P E++ E F +M++ P
Sbjct: 151 MMNSPEFLQQMSAVMSNPAILDQIIASNPQLGAMGPQAREML--QSERFRQMMSNP 204
>gi|217069976|gb|ACJ83348.1| unknown [Medicago truncatula]
Length = 159
Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 21 SHLDV----QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++ Q+ + +K+ I++ +G + Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVTPQDTISAVKKNIETVQGVDVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFI 70
Query: 76 VVMLSKPKP 84
V+MLSK KP
Sbjct: 71 VIMLSKSKP 79
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LA L PQFQ + ++QNP LL V+QQ+ Q+NP + L+ N +AF+++L
Sbjct: 199 LAQLAQNPQFQHIAQAIRQNPALLQPVMQQLAQTNPDVARLLQQNPQAFLQLL 251
Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD-QALSEYNIDESKFIVVML--SKPKPT 85
V +LKEKI +EK E + KL++ GK L++D + L E I ++ F+++M K +
Sbjct: 24 VAELKEKIATEKQKE--KDTIKLVHKGKQLTEDSKTLGELGIKDNDFVILMFFQKKAEKE 81
Query: 86 PAPYSGPSD 94
AP SD
Sbjct: 82 DAPQQAQSD 90
>gi|403221494|dbj|BAM39627.1| ubiquitin-related chaperonin [Theileria orientalis strain Shintoku]
Length = 382
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 94/203 (46%), Gaps = 49/203 (24%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAG------------KILSDDQALSEYN 68
LDV+ E V QLKEK +EK ++ + Q+LI+ G +I+ DD++LS N
Sbjct: 17 LDVEPEMTVLQLKEKC-AEK-ADATPDKQRLIFKGTDAHTISSFASRRIIKDDESLSGLN 74
Query: 69 IDESKFIVVMLSKPKPT-----PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFER 123
+++ I ++ S KP PAP + + P QPA Q T P AT S F
Sbjct: 75 VEDGNTIHLVRSGFKPASATPQPAPTTAQTAP-QPAAQ----TNP-LATGASGQNAFGYG 128
Query: 124 VNPYGGE--------SEDPLAFLRTQ--------PQFQQMRTVVQQNPELLPTVLQQIGQ 167
N +G + D + L Q P Q+M + + NPELL T++ Q
Sbjct: 129 NNMFGADYMSQMLQNPGDAMGDLNPQSAVALLESPFVQEMMSQISSNPELLRTLI----Q 184
Query: 168 SNPALLELISHNQEAFVRMLNEP 190
S+P L ++ + F +MLN P
Sbjct: 185 SSPYLQPMMQN--PVFAQMLNNP 205
>gi|392570549|gb|EIW63721.1| hypothetical protein TRAVEDRAFT_67745 [Trametes versicolor
FP-101664 SS1]
Length = 434
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 15/168 (8%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V +LK+ I +EK S+ A+ Q+LIY+G++L D+ AL Y I I ++
Sbjct: 30 ISTDKTVTELKQAI-AEK-SDVPADRQRLIYSGRVLKDEDALVTYKIQSGHTIHMVKGAA 87
Query: 83 KPTP-APYSGPSD-PTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGESEDP--L 135
+ P A + P PT +GQ P T + M NP+ G DP +
Sbjct: 88 RAGPSAQAAAPQQLPTMQSGQNPH--DPLTQLNGPMGFGLMAGFNPFAEMGLNPNDPNMM 145
Query: 136 AFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
+ PQF Q + V N P VL QI SNP L + +E F
Sbjct: 146 QTMLNSPQFLQQMSGVMAN----PAVLDQIIASNPQLAAMGPQVREVF 189
>gi|343426779|emb|CBQ70307.1| related to DSK2-ubiquitin-like protein [Sporisorium reilianum
SRZ2]
Length = 405
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V+QLKE I+ +K + A+ Q+LIYAGK+L DD+ALS Y + + + ++ S + P
Sbjct: 31 QTVRQLKEAIEKQK-PDIPADAQRLIYAGKVLKDDEALSVYKVKDGNTVHMVKSAARSAP 89
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI+ EKG E + QKLIYAGKIL+DD A +
Sbjct: 3 ITLKTLQQQTFKIDIDSEETVKALKEKIELEKGKEAFPVAGQKLIYAGKILNDDTATAAP 62
Query: 68 NIDESKFIVVMLSKPK-------PTPA-PYSGPSDPTQPAGQESEATRPATATSDS 115
+++ P PA P S P+ T P +E + P T + S
Sbjct: 63 APASPPLTYTPIARQNAPVLPTVPAPAVPTSEPTTTTAPKEEEKTDSPPETMSPSS 118
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
D+ Q ++ V D+ VKQ KI EKG + + QKLIY+GKIL DD + Y
Sbjct: 5 FKDLKQQKFTLDVEPTDLISAVKQ---KIAGEKG--WDPKDQKLIYSGKILKDDDTVESY 59
Query: 68 NIDESKFIVVMLS 80
I+E F+V M++
Sbjct: 60 KIEEKGFVVCMVN 72
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V +D++ + + LK KI+S + A QK+IY+GKILSDD+ +
Sbjct: 3 ITVKTTQQKVFQIDIEPTDTIGSLKAKIES--AHNHPAPTQKIIYSGKILSDDKTIESCG 60
Query: 69 IDESKFIVVMLS 80
+ E F V+M++
Sbjct: 61 VKEKDFFVLMVA 72
Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LA L PQ QQ+R +V+QNP L+ ++QQ+ NP + + ++ N + +++L
Sbjct: 282 LAALAANPQIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLL 334
>gi|365758887|gb|EHN00709.1| Dsk2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 364
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I K + Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVAVA---PESTVLQFKEAI--SKANSIPVANQRLIYSGKILKDDQTVDSYHIQDG 65
Query: 73 KFIVVMLSKPKPTPAPYSG-------------PSDPTQPAGQESEATRPATATSDSMLKV 119
+ ++ S+PKP +G + P +GQ + A TS
Sbjct: 66 HSVHLVKSQPKPDAGGATGANNATATSAAVGTSATPNMSSGQSAGFNPLADLTSARYAGY 125
Query: 120 F----FERVNPYGG------ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSN 169
+ P GG ++D L + P FQ + NP++L ++ QSN
Sbjct: 126 LNMPSADMFGPDGGALNNDSNNQDELLRMMENPIFQSQMNEMLSNPQMLDFMI----QSN 181
Query: 170 PAL 172
P L
Sbjct: 182 PQL 184
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+QTV +++ + V KEK+ K E A KL+Y+GK+L DD+ L EY I E I
Sbjct: 10 KQTVPIEVELTDTVLSTKEKLGQAKSCE--ASQIKLVYSGKVLVDDKTLEEYKIKEGVSI 67
Query: 76 VVMLSKPK----PTPAPYSGPSDPTQPAGQ 101
+ M+SK K TP P + + +PA +
Sbjct: 68 IFMISKAKSSQSSTPQPQAAATPEQKPASE 97
Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q Q +RT +Q NPEL+ +L+Q+ +NP + LI + EAF+R
Sbjct: 255 QMQLLRTALQTNPELIQPLLEQLAATNPQIASLIQQDPEAFIRTF 299
>gi|348543778|ref|XP_003459359.1| PREDICTED: large proline-rich protein BAG6-like, partial
[Oreochromis niloticus]
Length = 363
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
Q VKQ KE I S E + Q+LIY G++L DD+ L+EYN+D +V + P+PT
Sbjct: 21 QLTVKQFKEHIASSV--EIPVDKQRLIYQGRVLQDDRTLTEYNVDGKVIHLVERAPPQPT 78
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 37/54 (68%)
Query: 140 TQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+ P+F ++R +++QNPELL VL ++ +++P+ E I +Q+ F+ M+N AG
Sbjct: 194 SDPRFARVRDMLRQNPELLEVVLSRLAETDPSAFEAIRDHQDEFLSMINGSSAG 247
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V+ LK+++ S E Q+LIY G+I+ D LS+Y I E KFIV+M K P
Sbjct: 21 QDVRALKQRLGSMPEVAIPVESQQLIYGGRIMEDALPLSDYKIAEDKFIVLM-GKKMP-- 77
Query: 87 APYSGPSDPTQPAGQESEATRPAT 110
P +PAG +E P T
Sbjct: 78 --------PAKPAGTAAEENVPPT 93
>gi|255561391|ref|XP_002521706.1| plant ubiquilin, putative [Ricinus communis]
gi|223539097|gb|EEF40693.1| plant ubiquilin, putative [Ricinus communis]
Length = 548
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 26/188 (13%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI--DESKFIVVMLS 80
+ + E V+ K + + + A+ Q+LIY G+IL DDQ L Y + D + +V +
Sbjct: 35 ISLSESVETFKTVLAGK--CDVPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFA 92
Query: 81 KPKPTPAPYSGPSDPTQPAGQESEA--TRPATATSDSMLKVF-FERVNPYGGESEDPLAF 137
+ + PA + A + A S L +F R+N GG + F
Sbjct: 93 PAAAANTAPPSNTGGSNPASTNTRAVGSNEGGALGGSDLGLFPGMRLNGLGGSAG---LF 149
Query: 138 LRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEA 182
P+F+Q++ + +NP ++ P +++ + +NP + E+I N E
Sbjct: 150 GAGLPEFEQVQQQLTRNPNIMREIMNTPVVQNLMNNPEIMRNLIMNNPQMREIIDRNPE- 208
Query: 183 FVRMLNEP 190
+LN+P
Sbjct: 209 LAHILNDP 216
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein
(ubiquitin-like protein) [Piriformospora indica DSM
11827]
Length = 408
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ + +DV+ E V+ +KEKI E G + QKLIY+GK+L D + + + N
Sbjct: 3 ITIKTLQQKLFTVDVEPEQTVQAIKEKINEEHG--HPVASQKLIYSGKVLDDAKVVKDCN 60
Query: 69 IDESKFIVVML 79
E F+V+M+
Sbjct: 61 FKEKDFLVLMV 71
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
QMR +V++NP LL ++Q I +NPALLE I++N EA +++L
Sbjct: 297 QMRQMVRENPALLQELIQTIVANNPALLERINNNPEALLQLL 338
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+S +G++ Y A Q LI+ GK+L D+ + E + E+ FI
Sbjct: 11 THFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFI 70
Query: 76 VVMLSKPKP 84
V+M++K KP
Sbjct: 71 VIMMNKSKP 79
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT QQ V +D++ + + LK KI+S + A QK+IY+GKILSDD+ +
Sbjct: 3 ITVKTTQQKVFQIDIEPTDTIGSLKAKIES--AHNHPAPTQKIIYSGKILSDDKTIESCG 60
Query: 69 IDESKFIVVMLS 80
+ E F V+M++
Sbjct: 61 VKEKDFFVLMVA 72
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LA L PQ QQ+R +V+QNP L+ ++QQ+ NP + + ++ N + +++L
Sbjct: 287 LAALAANPQIQQLREIVRQNPALIQPLIQQLAAQNPQMAQALAANPDMLLQLL 339
>gi|224144057|ref|XP_002325171.1| predicted protein [Populus trichocarpa]
gi|222866605|gb|EEF03736.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I S G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 38 VDKQMPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQP 95
Query: 83 KPT 85
P+
Sbjct: 96 IPS 98
>gi|443895535|dbj|GAC72881.1| ubiquitin-like protein [Pseudozyma antarctica T-34]
Length = 452
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V+QLKE+I+ +K + A+ Q+LIYAGK+L DD+ LS Y I + + ++ S
Sbjct: 27 VSTDQTVRQLKEEIEKQK-PDTPADAQRLIYAGKVLKDDEPLSVYKIKDGNTVHMVKSAA 85
Query: 83 KPTP 86
+ P
Sbjct: 86 RSAP 89
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LR P F +R NP+ +P +L+ IG+S+P+LLE I NQ F+ L
Sbjct: 232 LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL 281
>gi|255636258|gb|ACU18469.1| unknown [Glycine max]
Length = 160
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 21 SHLDV----QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++ Q+ V ++K+ I++ +G++ Y A Q LI+ GK+L D L E + E+ FI
Sbjct: 11 THFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLEENKVVENTFI 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKSK 78
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LR P F +R NP+ +P +L+ IG+S+P+LLE I NQ F+ L
Sbjct: 108 LRNSPFFNIIRDAALSNPQRIPEILEMIGRSDPSLLEYIRENQNEFLNAL 157
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 52 IYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
++ GKIL DD+ + YNI+E F+V M++KPKPT
Sbjct: 22 LFQGKILKDDETVGSYNIEEKGFVVCMVNKPKPT 55
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
L FLR QFQQ+R +VQQ P++L +LQQ+G NP L ELI+ N + F+++L E
Sbjct: 236 LDFLRHNAQFQQLRQIVQQQPQMLEPILQQLGAGNPQLAELIASNPDQFLQLLGE 290
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 29 VKQLKEKIQSEKG-SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +K I++ +G S Y A+ Q LIY GKIL D+ L + E+ F+V+MLSK K
Sbjct: 23 VADVKRIIETTQGQSTYRADQQMLIYQGKILKDETTLESNGVAENSFLVIMLSKAK 78
>gi|242772628|ref|XP_002478074.1| ubiquitin-like protein DskB, putative [Talaromyces stipitatus ATCC
10500]
gi|218721693|gb|EED21111.1| ubiquitin-like protein DskB, putative [Talaromyces stipitatus ATCC
10500]
Length = 458
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 81/192 (42%), Gaps = 34/192 (17%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---LSKPKPT 85
V LKEK+ S + +E A+ Q+LIY+G++L D++ LS Y I + I ++ S +
Sbjct: 35 VADLKEKLSSSEYAETPADRQRLIYSGRVLKDNETLSSYKIKDGHTIHLVKSAASNQRQN 94
Query: 86 PAPYSGPSDP-TQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT---- 140
P P S S T P+ T A T ++ L Y G ++ P A +
Sbjct: 95 PPPQSSSSGAGTAPSSIPGVPTNIAAGTGNNPLAGLTGAR--YAGFAQLPGAGMFGPDGG 152
Query: 141 ---------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEA--- 182
PQ Q QNP L+ ++QQ NP L E+ ++
Sbjct: 153 MGPPPDPDQMLSMLENPQVQATMNEALQNPALIDLMIQQ----NPMLREMGPGVRQMMQS 208
Query: 183 --FVRMLNEPVA 192
F RML +P A
Sbjct: 209 PEFRRMLTDPAA 220
>gi|70992739|ref|XP_751218.1| ubiquitin-like protein DskB [Aspergillus fumigatus Af293]
gi|66848851|gb|EAL89180.1| ubiquitin-like protein DskB, putative [Aspergillus fumigatus Af293]
gi|159130327|gb|EDP55440.1| ubiquitin-like protein DskB, putative [Aspergillus fumigatus A1163]
Length = 472
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 83/208 (39%), Gaps = 55/208 (26%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
L + +V +LK+K+ S + ++ AE Q+LIY+G++L D++ L+ Y I + V L K
Sbjct: 29 LPLSTQVSELKQKLSSSEYADTPAERQRLIYSGRVLKDNETLATYKIKDGH--TVHLVK- 85
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-- 140
S S+ Q +S AT AT TS + N G +PLA L
Sbjct: 86 -------SAASNQRQGGATQSTATSAATGTSAAPAAGAVP-TNLAAGTGNNPLAGLTGAR 137
Query: 141 ---------------------------------QPQFQQMRTVVQQNPELLPTVLQQIGQ 167
PQFQ QNP ++ ++QQ
Sbjct: 138 YAGFAQLPGAGMFGPDGGMGPPPDAESMLNMLENPQFQSTINEALQNPAMIDMMIQQ--- 194
Query: 168 SNPALLELISHNQEA-----FVRMLNEP 190
NP L ++ ++ F RML +P
Sbjct: 195 -NPMLRDMGPGVRQMMQSPEFRRMLTDP 221
>gi|71004808|ref|XP_757070.1| hypothetical protein UM00923.1 [Ustilago maydis 521]
gi|46096874|gb|EAK82107.1| hypothetical protein UM00923.1 [Ustilago maydis 521]
Length = 422
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V+QLKE I+ +K + A+ Q+LIYAGK+L D++ALS Y + + I ++ S + P
Sbjct: 31 QTVRQLKEAIEKQK-PDVPADAQRLIYAGKVLKDEEALSVYKVKDGNTIHMVKSAARSAP 89
>gi|366991273|ref|XP_003675402.1| hypothetical protein NCAS_0C00430 [Naumovozyma castellii CBS 4309]
gi|342301267|emb|CCC69033.1| hypothetical protein NCAS_0C00430 [Naumovozyma castellii CBS 4309]
Length = 369
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN WQ ++ D + QLKE+I K SE A Q+LI++GKIL DDQ + Y I +
Sbjct: 11 QNNWQVSI---DPASTILQLKEEI--AKVSEVPATNQRLIFSGKILKDDQTVEFYKILDG 65
Query: 73 KFIVVMLS---------KPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF-- 121
I ++ S P P + P P AG E+ P + + + +
Sbjct: 66 LSIHMVKSGGGSANKNKSPPPQANTTATPVAPNMAAG-ETGGFNPLSDLTSARYAGYLNL 124
Query: 122 ---ERVNPYG-----GESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPAL 172
+ P G G ++D + + P FQ + NP++L ++ Q+NP L
Sbjct: 125 PSADTFGPDGGLNNSGPNQDEMLRMLDNPVFQSQMNEMLSNPQMLDFII----QANPQL 179
>gi|50294125|ref|XP_449474.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528788|emb|CAG62450.1| unnamed protein product [Candida glabrata]
Length = 373
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 28/179 (15%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN+W ++ D + + LKE+I K SE + Q+LIY+GKIL DDQ + YNI +
Sbjct: 11 QNKWDVSI---DPSQTILNLKEEI--AKVSEIPSGNQRLIYSGKILKDDQTVESYNIKDD 65
Query: 73 KFIVVMLSKPK------PTPAPYSGPSD----PTQPAGQESEATRPATATSDSMLKVF-- 120
I ++ S PT A S S P+ A ++ P + + +
Sbjct: 66 HAIHMVKSGGNASTSNAPTNANESSNSSTTAVPSNIASGQTGGFNPLADLTGARYAGYAN 125
Query: 121 ---FERVNPYGG----ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPAL 172
+ P GG +D + + P FQ + NPE+L ++ QSNP L
Sbjct: 126 LPSADMFGPDGGINNAPDQDEMLRMMENPIFQSQMNEMLSNPEMLDFMI----QSNPQL 180
>gi|224120430|ref|XP_002331046.1| predicted protein [Populus trichocarpa]
gi|222872976|gb|EEF10107.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I S G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 38 VDKQMPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHMVVRQP 95
Query: 83 KP 84
P
Sbjct: 96 IP 97
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 122 ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQE 181
E +P G +D L L++ P F+Q+ V+ +P LL +L+ +GQ+NP LL+ I Q+
Sbjct: 193 EHGDPAG---DDVLQMLQSHPMFEQLIQAVRSDPNLLQQMLENLGQTNPELLQAIIQRQD 249
Query: 182 AFVRML 187
FV +L
Sbjct: 250 EFVELL 255
>gi|325096431|gb|EGC49741.1| deubiquitination-protection protein dph1 [Ajellomyces capsulatus
H88]
Length = 473
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---L 79
LD + LK K+ ++ A Q+LIY+G++L D L+ +N+ + I ++ +
Sbjct: 29 LDPSTTIADLKAKLAGSDYADVPAARQRLIYSGRVLKDGDTLATHNVKDGHSIHLVKSAI 88
Query: 80 SKPKPTPAPYSG----PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPL 135
S P P P G SD T+ G + T A T ++ L Y G ++ P
Sbjct: 89 SNQHPAP-PSQGSSTTASDRTRTPGLPNVPTNIAAGTGNNPLAGLTGAR--YAGFAQLPG 145
Query: 136 AFLRT-------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELI 176
A + PQFQ QNP+L+ ++QQ NP LLE+
Sbjct: 146 AGMFGPDGGMGPPPDSEEIIRMLENPQFQSSMNEALQNPQLIDMMIQQ----NPMLLEMG 201
Query: 177 SHNQEA-----FVRMLNEP 190
++ F RML +P
Sbjct: 202 PGVRQMMQSPLFRRMLTDP 220
>gi|391867467|gb|EIT76713.1| ubiquitin-like protein [Aspergillus oryzae 3.042]
Length = 469
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+ N + T++ L V +V +LKEK+ + + ++ AE Q+LIY+G++L D++ L+ Y I +
Sbjct: 19 SSNDAKYTIT-LPVSAQVSELKEKLATSEYADTPAERQRLIYSGRVLKDNETLATYKIKD 77
Query: 72 SKFIVVMLS 80
I ++ S
Sbjct: 78 GHTIHLVKS 86
>gi|169770353|ref|XP_001819646.1| ubiquitin-like protein DskB [Aspergillus oryzae RIB40]
gi|238487248|ref|XP_002374862.1| ubiquitin-like protein DskB, putative [Aspergillus flavus
NRRL3357]
gi|83767505|dbj|BAE57644.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699741|gb|EED56080.1| ubiquitin-like protein DskB, putative [Aspergillus flavus
NRRL3357]
Length = 469
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+ N + T++ L V +V +LKEK+ + + ++ AE Q+LIY+G++L D++ L+ Y I +
Sbjct: 19 SSNDAKYTIT-LPVSTQVSELKEKLATSEYADTPAERQRLIYSGRVLKDNETLATYKIKD 77
Query: 72 SKFIVVMLS 80
I ++ S
Sbjct: 78 GHTIHLVKS 86
>gi|240280499|gb|EER44003.1| deubiquitination-protection protein dph1 [Ajellomyces capsulatus
H143]
Length = 473
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 38/199 (19%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---L 79
LD + LK K+ ++ A Q+LIY+G++L D L+ +N+ + I ++ +
Sbjct: 29 LDPSTTIADLKAKLAGSDYADVPAARQRLIYSGRVLKDGDTLATHNVKDGHSIHLVKSAI 88
Query: 80 SKPKPTPAPYSGPS----DPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPL 135
S P P P G S D T+ G + T A T ++ L Y G ++ P
Sbjct: 89 SNQHPAP-PSQGSSTTAGDRTRTPGLPNVPTNIAAGTGNNPLAGLTGAR--YAGFAQLPG 145
Query: 136 AFLRT-------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELI 176
A + PQFQ QNP+L+ ++QQ NP LLE+
Sbjct: 146 AGMFGPDGGMGPPPDSEEIIRMLENPQFQSSMNEALQNPQLIDMMIQQ----NPMLLEMG 201
Query: 177 SHNQEA-----FVRMLNEP 190
++ F RML +P
Sbjct: 202 PGVRQMMQSPLFRRMLTDP 220
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
PQF ++RT+ QN + LP V+QQI +PA+ E I N E F+ ++ E
Sbjct: 273 PQFDEIRTLYNQNTDTLPVVMQQIALRHPAVYEQIERNPEVFLSIMGE 320
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E++ +K KI EKG + QKLIY+GKIL D + YNI+E FIV
Sbjct: 11 QKFVIEAEPSEKILDVKGKIAMEKG--WPPSQQKLIYSGKILQDANTVESYNIEEKGFIV 68
Query: 77 VML 79
M+
Sbjct: 69 CMV 71
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
L FLR P FQQ+R +VQQ P++L +LQQ+G NP L +LI NQE F+++L+E +
Sbjct: 256 LEFLRNNPHFQQLRQLVQQQPQMLEPILQQVGAGNPQLAQLIGQNQEQFLQLLSEDI 312
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
L+ E V Q KEK+ KG E + K +Y+GK+L DD+ + I ++ M+SK
Sbjct: 16 ELEPTETVLQAKEKLAQVKGVEV--KQLKFVYSGKVLQDDKTIESTKIKADDQVIFMISK 73
Query: 82 ---PKPTPA---PYSGP-SDPTQPAGQESEATRPATAT 112
KPTPA P P + PTQP Q S +P+T T
Sbjct: 74 VAAKKPTPAASTPTPAPAAQPTQPTAQ-SAPVQPSTRT 110
Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 95 PTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQ-----FQQMRT 149
P+ P+G E +T A S + G P A RT Q+R
Sbjct: 223 PSAPSGTEEHST----AESGDLFAAAAAAAGGNPGSGSSPGASHRTGGAPSGGGLDQIRE 278
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLGT 203
+V+ NPE+L +L+Q+ Q P L LI N E F+ M+ V D + LGT
Sbjct: 279 IVRTNPEMLEPLLEQLSQQYPQLNGLIQQNPEEFINMILNGVNEDELSGEGLGT 332
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H ++Q + V +K+ I+ +G+ Y A Q LI+ GK+L D+ L E + E+ FI
Sbjct: 11 THFEIQVNLHDTVGDVKKNIEGAQGAAVYPAAQQMLIHQGKVLKDETTLEENQVAENSFI 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKNK 78
>gi|410076478|ref|XP_003955821.1| hypothetical protein KAFR_0B03900 [Kazachstania africana CBS
2517]
gi|372462404|emb|CCF56686.1| hypothetical protein KAFR_0B03900 [Kazachstania africana CBS
2517]
Length = 379
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN+W + ++ + + LKE+I K SE A Q+LIY+GKIL DDQ + Y I+E
Sbjct: 11 QNKWD---VNTNLSDSIATLKEEI--SKISEIPATNQRLIYSGKILKDDQTVESYKIEEG 65
Query: 73 KFIVVMLS 80
I ++ S
Sbjct: 66 HSIHLVKS 73
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 14/72 (19%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG------------KILSDDQALSEYNIDE 71
D E + LK+KIQ + + AE QKLIY+G KIL DD + + I E
Sbjct: 18 DESETIGGLKKKIQ--EAQSFPAELQKLIYSGGYQCSAQTNIPGKILKDDATVGDLKIKE 75
Query: 72 SKFIVVMLSKPK 83
F+VVM+SKPK
Sbjct: 76 KDFLVVMVSKPK 87
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L PQ Q++R VQ+NP L+ +LQQI SNP L ++++ N +A +L
Sbjct: 228 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLL 277
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR-M 186
GG++E L PQ +++R++V+ NP+ L TV+QQ+ + P + +L+ + E F+R M
Sbjct: 143 GGDTESLFNALMAVPQMEEIRSIVRSNPQALGTVIQQLQERFPQIAQLVQQDPEEFMRFM 202
Query: 187 LNEPVAGD 194
+ + V D
Sbjct: 203 VGDAVTAD 210
>gi|349580568|dbj|GAA25728.1| K7_Dsk2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297448|gb|EIW08548.1| Dsk2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 373
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 87 APYSGPSDPTQPAGQESEATRPATATSDSMLKVFFER--VNPYGGESEDPLAFLRTQ-PQ 143
AP G S P G ES +T A T FE V G + + TQ
Sbjct: 182 APNDGRSQPVSSTGVESTSTETAPGTD------LFEAAAVASSGQQQRE-----NTQRDD 230
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
Q+ ++Q NPE++ LQQI SNP L ELI N E F+R L E G+
Sbjct: 231 LMQIGELIQNNPEMVEPFLQQIASSNPQLAELIQQNPEEFMRALMEGDNGE 281
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
++ + +D + + KEK+ + K S+ A K +Y+GK+L DD+ + + E+ I+
Sbjct: 11 EKVILDVDPTDTILSAKEKLATVKNSD--ASKIKFVYSGKVLQDDKDFDAFKVKENDVII 68
Query: 77 VML 79
ML
Sbjct: 69 FML 71
>gi|151945984|gb|EDN64216.1| conserved protein [Saccharomyces cerevisiae YJM789]
Length = 373
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|4966345|gb|AAD34676.1|AC006341_4 Similar to gb|Y12014 RAD23 protein isoform II from Daucus carota.
This gene is probably cut off. EST gb|AA651284 comes
from this gene [Arabidopsis thaliana]
Length = 113
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
+V NP++L +LQ++G+ NP LL LI NQ F+++LNEP G
Sbjct: 1 MVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEG 44
>gi|156837046|ref|XP_001642559.1| hypothetical protein Kpol_1068p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156113102|gb|EDO14701.1| hypothetical protein Kpol_1068p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 381
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 36/197 (18%)
Query: 1 MGMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
MG+ H S QN+W+ TV DV V QLKE+I K SE E Q+LIY+GKIL D
Sbjct: 1 MGIKIHIKS--GQNKWEVTV---DVSNTVLQLKEEI--AKVSEIPVENQRLIYSGKILKD 53
Query: 61 DQALSEYNIDESKFIVVMLSKPKPTPAPY---------------SGPSDPTQPAGQESEA 105
DQ L Y I + I ++ S S P+ A +S
Sbjct: 54 DQVLEFYKIQDEHSIHLVKSGGASKTNTSASAAAASTSTATNSDSNAPLPSNIAAGQSGG 113
Query: 106 TRPATATSDSMLKVF------FERVNPYGG----ESEDPLAFLRTQPQFQQMRTVVQQNP 155
P + + + + + P GG ++D + + P FQ + NP
Sbjct: 114 FNPLSDLTSARYAGYGLNLPSADMFGPDGGMNSMPNQDDMLRMLENPVFQSQMNEMLSNP 173
Query: 156 ELLPTVLQQIGQSNPAL 172
+++ ++ QSNP L
Sbjct: 174 QMIDFMI----QSNPQL 186
>gi|786151|gb|AAB07267.1| ubiquitin-like protein [Saccharomyces cerevisiae]
Length = 373
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|6323932|ref|NP_014003.1| Dsk2p [Saccharomyces cerevisiae S288c]
gi|308153440|sp|P48510.2|DSK2_YEAST RecName: Full=Ubiquitin domain-containing protein DSK2
gi|825542|emb|CAA89774.1| unknown [Saccharomyces cerevisiae]
gi|190408502|gb|EDV11767.1| ubiquitin domain-containing protein DSK2 [Saccharomyces
cerevisiae RM11-1a]
gi|256270691|gb|EEU05854.1| Dsk2p [Saccharomyces cerevisiae JAY291]
gi|259148864|emb|CAY82109.1| Dsk2p [Saccharomyces cerevisiae EC1118]
gi|285814282|tpg|DAA10177.1| TPA: Dsk2p [Saccharomyces cerevisiae S288c]
gi|323303478|gb|EGA57272.1| Dsk2p [Saccharomyces cerevisiae FostersB]
gi|323332188|gb|EGA73599.1| Dsk2p [Saccharomyces cerevisiae AWRI796]
gi|323346973|gb|EGA81250.1| Dsk2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353206|gb|EGA85506.1| Dsk2p [Saccharomyces cerevisiae VL3]
Length = 373
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|207342075|gb|EDZ69951.1| YMR276Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 372
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 10 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 64
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 65 HSVHLVKSQPKP 76
>gi|226293296|gb|EEH48716.1| deubiquitination-protection protein dph1 [Paracoccidioides
brasiliensis Pb18]
Length = 485
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 57/211 (27%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSK 81
LD + LK K+ ++ AE Q+LIY+G++L D L+ + + + I +V +
Sbjct: 29 LDPSTTIGDLKAKLAGADYADVPAERQRLIYSGRVLKDGDTLATHKVKDGHAIHLVKSAV 88
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT- 140
+PTP + G S + RPA A + V N G +PLA L
Sbjct: 89 QRPTPT-FQGSS--------TASGDRPAQARTSLAANV---PTNIAAGTGNNPLAGLTGA 136
Query: 141 ----------------------------------QPQFQQMRTVVQQNPELLPTVLQQIG 166
PQFQ QNP+L+ ++QQ
Sbjct: 137 RYAGFAQLPGAGMFGPDGGMGPPPDSEEMINMLENPQFQSTMNEALQNPQLVDLMIQQ-- 194
Query: 167 QSNPALLELISHNQE-----AFVRMLNEPVA 192
NP L E+ ++ AF RML +P A
Sbjct: 195 --NPMLREMGPSVRQMMQSPAFRRMLTDPNA 223
>gi|225683908|gb|EEH22192.1| deubiquitination-protection protein dph1 [Paracoccidioides
brasiliensis Pb03]
Length = 485
Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 81/211 (38%), Gaps = 57/211 (27%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSK 81
LD + LK K+ ++ AE Q+LIY+G++L D L+ + + + I +V +
Sbjct: 29 LDPSTTIGDLKAKLAGADYADVPAERQRLIYSGRVLKDGDTLATHKVKDGHAIHLVKSAV 88
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT- 140
+PTP + G S + RPA A + V N G +PLA L
Sbjct: 89 QRPTPT-FQGSS--------TASGDRPAQARTSLAANV---PTNIAAGTGNNPLAGLTGA 136
Query: 141 ----------------------------------QPQFQQMRTVVQQNPELLPTVLQQIG 166
PQFQ QNP+L+ ++QQ
Sbjct: 137 RYAGFAQLPGAGMFGPDGGMGPPPDSEEMINMLENPQFQSTMNEALQNPQLVDLMIQQ-- 194
Query: 167 QSNPALLELISHNQE-----AFVRMLNEPVA 192
NP L E+ ++ AF RML +P A
Sbjct: 195 --NPMLREMGPSVRQMMQSPAFRRMLTDPNA 223
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K SG S Q + Q S ++P +AT+ S
Sbjct: 71 VVMLSKSK------SGGS-AGQASVQTSSVSQPVSATTSS 103
Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 156 ELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
E L Q++G+ NP LL LI NQ F++++NEP G
Sbjct: 245 EFLRNNDQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 282
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 124 VNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
V P ESE A R PQF ++R + QN + LP V+QQI +PA+ E I + E F
Sbjct: 252 VAPSTAESEMRAALSRI-PQFDEIRILYNQNTDTLPVVMQQIALRHPAVYEQIERDPEVF 310
Query: 184 VRMLNE 189
+ ++ E
Sbjct: 311 LSIMGE 316
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 16 WQQTVSHLDV---QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
+++ LDV E VK +KEK+ + + + AE KLI++GK+L D + +E + E+
Sbjct: 9 FKKNKETLDVDLEHESVKDVKEKLAAARDCD--AEQIKLIFSGKVLQDAKPFAETGLKEN 66
Query: 73 KFIVVMLSKPKPTPA 87
+++M+SK K PA
Sbjct: 67 DHVIMMVSKKKSVPA 81
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+++ + V KEK+ +EK E A K +Y+GK+L DD+ L I E I+ M+SK
Sbjct: 17 VELTDTVLSTKEKLAAEKDCE--ASQLKFVYSGKVLPDDKTLESLKIKEGDAIIFMISKT 74
Query: 83 KPTPAPYSG---PSDPTQPAGQESE 104
K + P S S P + + +ESE
Sbjct: 75 KKSATPSSEQPQASKPEKESSKESE 99
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
L + Q + +R +Q NPEL+ +L+Q+ SNP + LI + E F+R
Sbjct: 237 LNEENQMRLLRAALQTNPELIQPLLEQLAASNPQVAALIQQDPEGFIR 284
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 124 VNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
V P ESE A R PQF ++R + QN + LP V+QQI +PA+ E I + E F
Sbjct: 252 VAPSTAESEMRAALSRI-PQFDEIRILYNQNTDTLPVVMQQIALRHPAVYEQIERDPEVF 310
Query: 184 VRMLNE 189
+ ++ E
Sbjct: 311 LSIMGE 316
>gi|45185101|ref|NP_982818.1| ABL129Wp [Ashbya gossypii ATCC 10895]
gi|44980737|gb|AAS50642.1| ABL129Wp [Ashbya gossypii ATCC 10895]
gi|374106020|gb|AEY94930.1| FABL129Wp [Ashbya gossypii FDAG1]
Length = 345
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN+W+ +V + V +LK++I K SE AE Q+LIY+GKIL DDQ + Y I +
Sbjct: 11 QNRWEVSV---EASGSVGELKQEI--AKVSEIPAENQRLIYSGKILKDDQTVESYKIADG 65
Query: 73 KFI 75
I
Sbjct: 66 HAI 68
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYN 68
IT Q + +D Q+ V LK+KIQ + + E QKLIY+GKIL+D ++
Sbjct: 4 ITFKTVQNKLFTVDAQDSDTVADLKKKIQETQ--TFPVENQKLIYSGKILNDASSVESLK 61
Query: 69 IDESKFIVVMLSK 81
I E F+VVM+S+
Sbjct: 62 IKEKDFLVVMVSR 74
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
Q +R +VQQNP ++ +LQQI +P L +LI+ N EA
Sbjct: 290 QLSAIRQMVQQNPAMIQPLLQQIATEHPELAQLIAQNPEAL 330
>gi|323307593|gb|EGA60860.1| Dsk2p [Saccharomyces cerevisiae FostersO]
Length = 373
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|410904551|ref|XP_003965755.1| PREDICTED: uncharacterized protein LOC101061488 [Takifugu rubripes]
Length = 1188
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
Q VK+ KE I G + Q+LIY G++L DD+ L++YN+ K I ++ P P
Sbjct: 27 QLTVKEFKEHIAPSVG--IPVDKQRLIYQGRVLQDDRTLADYNVG-GKVIHLVERAPPPP 83
Query: 86 PAPYSGPSDPTQPAGQESEATRPAT-------ATSDSMLKVFFERVN 125
SG T +G S + P+T A S ML F VN
Sbjct: 84 SQSNSGTGGSTTDSGAASSSQGPSTMPPHDRNANSYVMLGTFNLPVN 130
>gi|359476923|ref|XP_002263194.2| PREDICTED: uncharacterized protein LOC100250759 [Vitis vinifera]
Length = 483
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+ ++ V+ K + + + AE Q+LIY G+IL DDQ L Y ++ + ++
Sbjct: 34 QISLESTVRAFKAVL--SQNCDIPAEQQRLIYKGRILKDDQTLESYGLEADHTVHLVRGF 91
Query: 82 PKPTPAPYSGPSDPTQP 98
P PA +GP+D +P
Sbjct: 92 APPAPADKAGPADSGRP 108
>gi|222640293|gb|EEE68425.1| hypothetical protein OsJ_26792 [Oryza sativa Japonica Group]
Length = 747
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LKEKI + G L+E Q+LI G++L DD+ LS Y++++ + +++ +P
Sbjct: 125 VPLLKEKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRQP------ 176
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLK-VFFERVN 125
G S + AG E + PA +M + + E +N
Sbjct: 177 --GQSATSGNAGNEGTTSNPARRRGPTMTRSIVLEAIN 212
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 22 HLDVQEEVKQLKEKIQSEK-GSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
++ + V+ +KEKI ++ +Y A+ KLI++GKIL D + L Y+I F+VV+
Sbjct: 16 ECELSDTVRTIKEKIAAKDLKDKYEADAVKLIFSGKILEDSKTLEFYSITSDSFLVVVKQ 75
Query: 81 KP-KPTPAPYSGPSDPTQPAGQES 103
P KP + + P+ P+G S
Sbjct: 76 APTKPQAGSAAAAAAPSNPSGAAS 99
>gi|218200878|gb|EEC83305.1| hypothetical protein OsI_28673 [Oryza sativa Indica Group]
Length = 609
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 11/95 (11%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSG 91
LKEKI + G L+E Q+LI G++L DD+ LS Y++++ + +++ +P G
Sbjct: 63 LKEKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRQP--------G 112
Query: 92 PSDPTQPAGQESEATRPATATSDSMLK-VFFERVN 125
S + AG E + PA +M + + E +N
Sbjct: 113 QSATSGNAGNEGTTSNPARRRGPTMTRSIVLEAIN 147
>gi|167999117|ref|XP_001752264.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696659|gb|EDQ82997.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
+VQ NP++L +LQ++G+ NPALL LI+ NQ F+R++N
Sbjct: 1 MVQANPQILQPMLQELGKQNPALLRLINENQAEFLRLIN 39
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%)
Query: 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+ L L PQFQQ+ V++QNP+L+ +LQ++ Q+NP L +L+ N +AF+ +
Sbjct: 194 EELQALAQNPQFQQIVQVIRQNPQLILPILQELSQTNPQLAQLLQSNPQAFLSYI 248
Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA-LSEYNIDESKFIVVMLSKPKPTPA 87
+ Q+K+ I +KG E E KL++ GK L+DDQ E I E+ F+++M+ K
Sbjct: 24 ISQIKDTICQKKG-EQCKENIKLVHKGKQLNDDQKNCQELGIKENDFLIMMVFTKKQGQI 82
Query: 88 PYSGPSD 94
P P++
Sbjct: 83 PKQQPAE 89
>gi|297836440|ref|XP_002886102.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata]
gi|297331942|gb|EFH62361.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata]
Length = 537
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V+ KE I + S+ A Q+LIY G+IL DDQ L Y + ++ V M+ P
Sbjct: 40 VESFKELI--AQNSDVPANQQRLIYKGRILKDDQTLLSYGL-QADHTVHMVRGFVP---- 92
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSML---KVFFERV--NPYGGESEDPLAFLRTQPQ 143
S PS P AG ++ A + ++ S L + F + NP GG + F P
Sbjct: 93 -SSPSAPAANAGNQTTAPQAVSSNDSSNLGGGESLFPGLGFNPLGGGNAMAGLFGSGLPD 151
Query: 144 FQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEAFVRMLN 188
+Q + + QNP ++ P ++ + +NP + EL+ N E +LN
Sbjct: 152 LEQAQQQLAQNPNMIRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPE-LGHVLN 210
Query: 189 EP 190
+P
Sbjct: 211 DP 212
>gi|76154366|gb|AAX25853.2| SJCHGC05634 protein [Schistosoma japonicum]
Length = 257
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 10/179 (5%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
+ ++TVS L VK+L++ ++ K E +E LI+ GKIL D+ + + I +
Sbjct: 20 RGEKTVSVLSTCS-VKELRD--EASKAFETPSERLILIFGGKILKDEDTIEQLKIKDGFI 76
Query: 75 IVVMLSK-PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESED 133
I +++SK +P+ +G S AG E+TR +T + ++ + +N + G +
Sbjct: 77 IHLVISKQQQPSQVNPTGTSSVVTDAG---ESTRESTRSPNNTPQTGTAGLNTFAGMQQA 133
Query: 134 PLAFLRTQPQF--QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
A + P+ + + + Q+ P V++ + Q+NP + +LI N E MLN P
Sbjct: 134 MQAQVMQNPELLRNMLDSPLVQSLMSNPEVIRSLFQANPQMRDLIERNPE-LGHMLNNP 191
>gi|365763974|gb|EHN05500.1| Dsk2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 373
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVX---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|401839993|gb|EJT42919.1| DSK2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 173
Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I K + Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVAVA---PECTVLQFKEAI--SKANSIPVANQRLIYSGKILKDDQTVDSYHIQDG 65
Query: 73 KFIVVMLSKPKPTPAPYSG 91
+ ++ S+PKP +G
Sbjct: 66 HSVHLVKSQPKPDAGGATG 84
>gi|356562900|ref|XP_003549706.1| PREDICTED: uncharacterized protein LOC100783070 [Glycine max]
Length = 714
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I S G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 34 VDKQMPVPALKEQIASVTG--VLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQP 91
Query: 83 K-PTPAPYS 90
P P S
Sbjct: 92 DLPPPGSVS 100
>gi|323336037|gb|EGA77312.1| Dsk2p [Saccharomyces cerevisiae Vin13]
Length = 373
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVX---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>gi|315053735|ref|XP_003176242.1| ubiquitin domain-containing protein DSK2 [Arthroderma gypseum CBS
118893]
gi|311338088|gb|EFQ97290.1| ubiquitin domain-containing protein DSK2 [Arthroderma gypseum CBS
118893]
Length = 416
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---------- 78
V ++K+ + + + AE Q+LIY+G++L D L+ + + E I ++
Sbjct: 30 VAEIKQILTGAEYANVPAERQRLIYSGRVLKDSDTLASHKVKEGHTIHLVKSSAPASSSS 89
Query: 79 --LSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF-------FERV----- 124
+ + + G S P+ P+G T AT T +S+L F ++
Sbjct: 90 GTTNTTTTSSSNVPGRSTPSAPSGAAGVPTNLATGTGNSVLAGLTGARYAGFSQLPGAGM 149
Query: 125 -NPYGGES----EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHN 179
P GG D + + PQFQ QNP+++ ++QQ NP L ++ +
Sbjct: 150 FGPDGGMGPLPDTDQILSMMENPQFQSTMNEALQNPQIIDMMIQQ----NPMLRDVPNAR 205
Query: 180 Q----EAFVRMLNEP 190
Q F RML +P
Sbjct: 206 QMLQSPEFRRMLTDP 220
>gi|296082103|emb|CBI21108.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LKE+I S G L+E Q+LI G++L DDQ LS Y++++ + +++ +P P
Sbjct: 46 VPALKEQIASVTG--VLSEQQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPFP---- 99
Query: 89 YSGPSDPTQPAGQESEATRPATAT 112
PS + P ++ AT PA+ T
Sbjct: 100 ---PSSESLP---DNSATDPASNT 117
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L PQ Q++R VQ+NP L+ +LQQI SNP L ++++ N +A +L
Sbjct: 219 LANSPQLQRIRQAVQENPALIQPLLQQIAASNPGLAQMLNQNPQALYDLL 268
Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG------------KILSDDQALSEYNIDE 71
D E + LK+KIQ + + AE QKLIY+G KIL DD + + I E
Sbjct: 18 DESETIGGLKKKIQ--EAQSFPAELQKLIYSGGYQCSAQTNIPGKILKDDATVGDLKIKE 75
Query: 72 SKFIVVMLSK 81
F+VVM+SK
Sbjct: 76 KDFLVVMVSK 85
>gi|359476161|ref|XP_002283083.2| PREDICTED: uncharacterized protein LOC100249152 [Vitis vinifera]
Length = 708
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LKE+I S G L+E Q+LI G++L DDQ LS Y++++ + +++ +P P
Sbjct: 46 VPALKEQIASVTG--VLSEQQRLICRGRVLKDDQLLSAYHVEDGHTLHLVVRQPFP---- 99
Query: 89 YSGPSDPTQPAGQESEATRPATAT 112
PS + P ++ AT PA+ T
Sbjct: 100 ---PSSESLP---DNSATDPASNT 117
>gi|255583496|ref|XP_002532506.1| scythe/bat3, putative [Ricinus communis]
gi|223527781|gb|EEF29882.1| scythe/bat3, putative [Ricinus communis]
Length = 709
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I S G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 38 VDKQMPVPALKEQIASVTG--VLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVVRQP 95
>gi|427796047|gb|JAA63475.1| Putative large proline-rich protein bag6, partial [Rhipicephalus
pulchellus]
Length = 1360
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 19 TVSHLDVQEE---------VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
TV LD Q VK KEKI S A+ Q+LI+ G++L DD+ LSEY++
Sbjct: 42 TVKTLDSQNRNYSVPDDITVKNFKEKIASSV--NITADKQRLIFCGRVLQDDKKLSEYDV 99
Query: 70 DESKFIVVMLSKPKPTP 86
+ ++ ++ +P P P
Sbjct: 100 NGK--VIHLVQRPPPQP 114
>gi|388851441|emb|CCF54843.1| related to DSK2-ubiquitin-like protein [Ustilago hordei]
Length = 432
Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V+QLKE I+ +K + A+ Q+LIYAGK+L D++ LS Y I + + ++ S + P
Sbjct: 31 QTVRQLKEAIEKQK-PDVPADSQRLIYAGKVLKDEETLSVYKIKDGNTVHMVKSAARSAP 89
>gi|443727791|gb|ELU14398.1| hypothetical protein CAPTEDRAFT_19493 [Capitella teleta]
Length = 555
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D +VK+LKE++ K E + LI+AGKIL D ++L + + + + +++
Sbjct: 25 EVDGGADVKELKEEV--AKVYETTVDRVCLIFAGKILKDGESLLKNGVKDGLAVHLVIKS 82
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ 141
T A P+ P+Q Q A PA + + G F+ Q
Sbjct: 83 GNRTQAEQ--PTSPSQ--AQTGSAPAPADTSQTPFGLGSLGGLPGMSGMGVGSANFMDMQ 138
Query: 142 PQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEAFVRM 186
Q+M+ + NPE++ P V++Q+ SNP + EL+ N E M
Sbjct: 139 ---QRMQREMMSNPEMMRQLMDNPMVQQLMSNPDVMRQLITSNPQMRELMERNPE-ITHM 194
Query: 187 LNEP 190
LN P
Sbjct: 195 LNNP 198
>gi|91094817|ref|XP_970830.1| PREDICTED: similar to ubiquilin 1,2 [Tribolium castaneum]
gi|270006569|gb|EFA03017.1| hypothetical protein TcasGA2_TC010440 [Tribolium castaneum]
Length = 511
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 87/204 (42%), Gaps = 48/204 (23%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
IS ++Q Q+ V ++ +VK KE I + +E + LI+AGKIL D LS++
Sbjct: 29 ISITVKSQKQKEVIEVEETADVKSFKELISEKFNAEI--DRLNLIFAGKILKDGDTLSQH 86
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY 127
NI + + +++ K PAP +S +TRP + S NP+
Sbjct: 87 NIRDGLTVYLVV---KAAPAP-------------DSTSTRPPGDGAQSQTS-----FNPF 125
Query: 128 GG------ESEDPLAFLRTQPQFQQMRTVVQQNPELL---------------PTVLQQIG 166
GG + + Q Q+++ +Q NP +L P ++ +
Sbjct: 126 GGLVGLSSMGMNSTNLVEIQ---QRLQREIQNNPAILQSYLDNPLTQSLMNNPEHMRTLI 182
Query: 167 QSNPALLELISHNQEAFVRMLNEP 190
SNP + EL+ N E MLN P
Sbjct: 183 TSNPQMQELLERNPE-IGHMLNNP 205
>gi|119473056|ref|XP_001258482.1| ubiquitin-like protein DskB, putative [Neosartorya fischeri NRRL
181]
gi|119406634|gb|EAW16585.1| ubiquitin-like protein DskB, putative [Neosartorya fischeri NRRL
181]
Length = 470
Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 82/208 (39%), Gaps = 55/208 (26%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
L + +V +LK+K+ S + ++ AE Q+LIY+G++L D++ L+ Y I + V L K
Sbjct: 29 LPLSTQVSELKQKLSSSEYADTPAERQRLIYSGRVLKDNETLATYKIKDGH--TVHLVK- 85
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-- 140
S S+ Q +S AT T TS + N G +PLA L
Sbjct: 86 -------SAASNQRQGGATQSTATSAPTGTSAAPAAGAVP-TNLAAGTGNNPLAGLTGAR 137
Query: 141 ---------------------------------QPQFQQMRTVVQQNPELLPTVLQQIGQ 167
PQFQ QNP ++ ++QQ
Sbjct: 138 YAGFAQLPGAGMFGPDGGMGPPPDAESMLNMLENPQFQSTINEALQNPAMIDMMIQQ--- 194
Query: 168 SNPALLELISHNQEA-----FVRMLNEP 190
NP L ++ ++ F RML +P
Sbjct: 195 -NPMLRDMGPGVRQMMQSPEFRRMLTDP 221
>gi|358366517|dbj|GAA83138.1| ubiquitin-like protein DskB [Aspergillus kawachii IFO 4308]
Length = 467
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 77/208 (37%), Gaps = 55/208 (26%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
L V LKEK+ S + ++ AE Q+LIY+G++L D++ L+ Y I + I ++ S P
Sbjct: 29 LPSSTSVSDLKEKLSSSEYADTPAERQRLIYSGRVLKDNETLATYKIKDGHTIHLVKSAP 88
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-- 140
+P G S + A A + N G +PLA L
Sbjct: 89 SNV-----------RPGGAASTTSTSAPAGAAPTPAAAGVPTNLAAGTGNNPLAGLTGAR 137
Query: 141 ---------------------------------QPQFQQMRTVVQQNPELLPTVLQQIGQ 167
PQFQ QNP ++ ++QQ
Sbjct: 138 YAGFAQLPGAGMFGPDGGMGPPPDTESMLNMLENPQFQSTINEALQNPAMIDMMIQQ--- 194
Query: 168 SNPALLELISHNQEA-----FVRMLNEP 190
NP L E+ ++ F RML +P
Sbjct: 195 -NPMLREMGPGVRQMMQSPEFRRMLTDP 221
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 124 VNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
V+P E LA L + P+F Q+R ++ QNP+ L +L Q+ SNP + E + ++ F
Sbjct: 179 VSPSVAEMAVNLAPLMSDPRFAQVREMILQNPDQLEAILGQMSGSNPEVFEALRNHHGEF 238
Query: 184 VRMLN 188
V +LN
Sbjct: 239 VDLLN 243
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78
+D + V LK+++ S G + +LIY G+I+ D LSEY I E KF+V+M
Sbjct: 17 MDEGQNVLALKKRLVSMPGISQSVDSLQLIYGGRIMEDGLPLSEYKIAEDKFLVMM 72
>gi|449454281|ref|XP_004144884.1| PREDICTED: ubiquilin-2-like isoform 1 [Cucumis sativus]
gi|449473217|ref|XP_004153820.1| PREDICTED: ubiquilin-2-like isoform 1 [Cucumis sativus]
Length = 551
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 46 AEYQKLIYAGKILSDDQALSEYNI--DESKFIVVMLSKPKPTP-APYSG---PSDPTQPA 99
A+ Q+LIY G+IL DDQ L Y + D + +V ++ TP AP S S T P
Sbjct: 60 ADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNTRSSDTAPG 119
Query: 100 GQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ-PQFQQMRTVVQQNPELL 158
+ + A + L + G +PL P+F+Q++ + QNP ++
Sbjct: 120 VTRGVGSNESGAFGNGGLGASL-----FPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMM 174
Query: 159 ---------------PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
P +++ + SNP + ++I N E +LN+P
Sbjct: 175 REIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPE-LAHILNDP 220
>gi|449454283|ref|XP_004144885.1| PREDICTED: ubiquilin-2-like isoform 2 [Cucumis sativus]
gi|449473220|ref|XP_004153821.1| PREDICTED: ubiquilin-2-like isoform 2 [Cucumis sativus]
Length = 546
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 28/167 (16%)
Query: 46 AEYQKLIYAGKILSDDQALSEYNI--DESKFIVVMLSKPKPTP-APYSG---PSDPTQPA 99
A+ Q+LIY G+IL DDQ L Y + D + +V ++ TP AP S S T P
Sbjct: 60 ADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASSTPSAPASNVNTRSSDTAPG 119
Query: 100 GQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ-PQFQQMRTVVQQNPELL 158
+ + A + L + G +PL P+F+Q++ + QNP ++
Sbjct: 120 VTRGVGSNESGAFGNGGLGASL-----FPGLGFNPLGGGGAGLPEFEQVQQQLTQNPNMM 174
Query: 159 ---------------PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
P +++ + SNP + ++I N E +LN+P
Sbjct: 175 REIMNMPAIQNLMNNPDLMRTLIMSNPQMRDIIDRNPE-LAHILNDP 220
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q Q +R +Q NPEL+ +L+Q+ SNP + LI + EAF+RM ++G + N LG
Sbjct: 217 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPEAFIRMF---LSGAPGSGNDLG 273
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q Q +R +Q NPEL+ +L+Q+ SNP + LI + EAF+RM ++G + N LG
Sbjct: 217 QMQLLRAALQSNPELIQPLLEQLAASNPQIANLIQQDPEAFIRMF---LSGAPGSGNDLG 273
>gi|18398343|ref|NP_565407.1| ubiquilin [Arabidopsis thaliana]
gi|13430494|gb|AAK25869.1|AF360159_1 putative ubiquitin protein [Arabidopsis thaliana]
gi|14596081|gb|AAK68768.1| putative ubiquitin-like protein [Arabidopsis thaliana]
gi|20148243|gb|AAM10012.1| putative ubiquitin-like protein [Arabidopsis thaliana]
gi|20198103|gb|AAD25137.2| putative ubiquitin-like protein [Arabidopsis thaliana]
gi|21280931|gb|AAM44934.1| putative ubiquitin protein [Arabidopsis thaliana]
gi|110735106|gb|ABG89123.1| Dsk2b [synthetic construct]
gi|110737155|dbj|BAF00527.1| ubiquitin-like protein [Arabidopsis thaliana]
gi|330251502|gb|AEC06596.1| ubiquilin [Arabidopsis thaliana]
Length = 538
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V+ KE I + S+ A Q+LIY G+IL DDQ L Y + ++ V M+ P
Sbjct: 40 VESFKELI--AQNSDVPANQQRLIYKGRILKDDQTLLSYGL-QADHTVHMVRGFVP---- 92
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSML---KVFFERV--NPYGGESEDPLAFLRTQPQ 143
S PS P AG ++ A + + S L + F + NP GG + F P
Sbjct: 93 -SSPSAPAANAGNQTTAPQAVGSNDSSNLGGGESLFPGLGFNPLGGGNAMAGLFGSGLPD 151
Query: 144 FQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEAFVRMLN 188
+Q + + QNP ++ P ++ + +NP + EL+ N E +LN
Sbjct: 152 LEQAQQQLAQNPNMIREMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPE-LGHVLN 210
Query: 189 EP 190
+P
Sbjct: 211 DP 212
>gi|71747380|ref|XP_822745.1| ubiquitin-like protein DSK2 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832413|gb|EAN77917.1| ubiquitin-like protein DSK2, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261332523|emb|CBH15518.1| ubiquitin-like protein DSK2, putative [Trypanosoma brucei gambiense
DAL972]
Length = 302
Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 73/176 (41%), Gaps = 25/176 (14%)
Query: 14 NQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESK 73
N ++TV D+ V Q KE +E E A Q+++ GK+L D LS ++ +
Sbjct: 9 NGDKKTVEVPDLSITVIQFKEL--AENAVEIPAAEQRIVLRGKVLKDTDVLSAVGLEHGQ 66
Query: 74 FI-VVMLSKPK----PTPAPYSGPSDP------------TQPAGQESEATRPATATSDSM 116
+ +V +PK T AP GPS+P P SE++ P + M
Sbjct: 67 AVHIVRGQQPKTQATSTSAPVPGPSNPPHVASNSYSTASNAPMNSNSESSNPYMPLAGYM 126
Query: 117 LKVFFERVNP--YGGE----SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIG 166
VN GG S D A L P F QM + NP+ + T++Q G
Sbjct: 127 PTSLSGGVNAAGMGGSFPPFSSDAAAQLMQSPLFSQMMRDMLGNPQFMQTMMQFAG 182
>gi|284044814|ref|YP_003395154.1| ubiquitin [Conexibacter woesei DSM 14684]
gi|283949035|gb|ADB51779.1| ubiquitin [Conexibacter woesei DSM 14684]
Length = 360
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ ++Q+K+KIQ ++G + Q+LIYAG++L D + L++YNI + + L +P P
Sbjct: 46 DSIEQVKQKIQDKEGIP--PDRQRLIYAGRVLEDGRTLADYNIQRESTLHLFLRLREPVP 103
>gi|357478431|ref|XP_003609501.1| Large proline-rich protein BAT3 [Medicago truncatula]
gi|355510556|gb|AES91698.1| Large proline-rich protein BAT3 [Medicago truncatula]
Length = 730
Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I + G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 38 VDKQMPVPALKEQIATVTG--VLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQP 95
Query: 83 KPTPAPYSGP 92
P P S P
Sbjct: 96 D-LPPPGSLP 104
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+R ++QQ PE+ VLQQ+ SNP L E++ N EAF+R + +
Sbjct: 228 LREILQQQPEMAEAVLQQLAASNPQLAEIVQSNPEAFMRYITD 270
Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS- 80
+++ + V KEK+ S K E A K +Y+GK+L DD+ + I E+ ++ M+S
Sbjct: 16 EVELSDSVLSAKEKLASLKECE--ASQVKFVYSGKVLQDDKTFENFKIKENDQVIFMISK 73
Query: 81 ------------KPKPTPAPYSGP-SDPTQPAGQESEATRPA----TATSDSMLKVFFER 123
K + +PA + P ++P QPA + S AT A T S S+ + +
Sbjct: 74 PKKAAAAPEPAAKEQASPAGAAAPVAEPAQPAQEGSSATPAAFDASTFASGSVRETAIQN 133
Query: 124 VNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPE 156
+ G E +PQ +Q T NP+
Sbjct: 134 IMAMGFE----------RPQVEQALTAAFNNPD 156
>gi|402222459|gb|EJU02525.1| ubiquitin-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 362
Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 20/187 (10%)
Query: 14 NQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESK 73
N+ + ++S + + + V LKE I + ++ A Q+LIY+G++L DD ALS Y + S
Sbjct: 13 NELKLSIS-ISLDKTVLDLKESI--AECADVPAAQQRLIYSGRVLKDDDALSSYKL-ASG 68
Query: 74 FIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGE 130
V M+ P A PT GQ T P T + NP+ G
Sbjct: 69 HTVHMVKSPVRRDAEPPRQQLPTMQTGQNP--TDPLTVLNGPAGHGVMAGFNPFAQMGVN 126
Query: 131 SEDP--LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISH-----NQEAF 183
DP + + P+F Q + + NP+ +L QI SNP L + E F
Sbjct: 127 PNDPNMMQSMLDSPEFLQSMSHLMSNPQ----ILDQIIASNPQLAAMGPQVRQVLQSEQF 182
Query: 184 VRMLNEP 190
+M++ P
Sbjct: 183 RQMMSNP 189
>gi|363752475|ref|XP_003646454.1| hypothetical protein Ecym_4608 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890089|gb|AET39637.1| hypothetical protein Ecym_4608 [Eremothecium cymbalariae
DBVPG#7215]
Length = 406
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN+WQ + D + LK++I + S AE Q+LIY+GKIL DDQ + Y I +
Sbjct: 11 QNKWQVSA---DPSSSIGTLKQRI--AEVSHIPAENQRLIYSGKILKDDQTVESYKIADG 65
Query: 73 KFI 75
I
Sbjct: 66 HSI 68
>gi|297735661|emb|CBI18348.3| unnamed protein product [Vitis vinifera]
Length = 945
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
H+D V KEKI +E G E Q+LI+ GK+L DDQ L+EY+++ + ++
Sbjct: 39 HVDKNLPVSLFKEKIANEIG--VPVEQQRLIFRGKVLKDDQLLAEYHVENGHTLHLVARD 96
Query: 82 P 82
P
Sbjct: 97 P 97
>gi|294516726|gb|ADE96995.1| CIP73 protein [Lotus japonicus]
Length = 691
Score = 45.1 bits (105), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LK +I+S G ++E Q+LI GK+L DDQ LS Y++++ + ++ P
Sbjct: 38 VDKQMPVPALKAQIESLTG--VMSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVARHP 95
Query: 83 KPTP 86
TP
Sbjct: 96 DLTP 99
>gi|357478427|ref|XP_003609499.1| Large proline-rich protein BAT3 [Medicago truncatula]
gi|355510554|gb|AES91696.1| Large proline-rich protein BAT3 [Medicago truncatula]
Length = 787
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D Q V LKE+I + G L+E Q+LI GK+L DDQ LS Y++++ + +++ +P
Sbjct: 111 VDKQMPVPALKEQIATVTG--VLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQP 168
Query: 83 KPTPAPYSGP 92
P P S P
Sbjct: 169 D-LPPPGSLP 177
>gi|255712229|ref|XP_002552397.1| KLTH0C03938p [Lachancea thermotolerans]
gi|238933776|emb|CAR21959.1| KLTH0C03938p [Lachancea thermotolerans CBS 6340]
Length = 376
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI--D 70
QN+W + D + Q K I ++ SE E Q+LIY+GKIL DDQ + Y I D
Sbjct: 11 QNKWDVAI---DPSSTIAQFKSAIAAQ--SEIAPENQRLIYSGKILKDDQTVESYKILDD 65
Query: 71 ESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATAT 112
S +V SG S G + A+ ATAT
Sbjct: 66 HSVHLV------------KSGGSKKATSPGATAAASGDATAT 95
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + V +K+ I+ +G + Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVQPSDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVENKVSEDGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
VVMLSK K + S + QP A+ PAT S
Sbjct: 71 VVMLSKSKTS---GSAAASSVQP------ASNPATTVS 99
>gi|393220164|gb|EJD05650.1| ubiquitin-domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 418
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 78/193 (40%), Gaps = 34/193 (17%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + E V LK IQ+E G E A Q+LIY+G++L D LS Y I I ++
Sbjct: 31 ISLNETVLDLKNAIQTETGVE--ANRQRLIYSGRVLKDADVLSTYKIRPLDTIHMVKGAA 88
Query: 83 KPTPAPYSGPSD------------PTQPAGQESEATRPATATSDSM----LKVFFERVNP 126
+ + SGPS PT GQ + P T + M L F
Sbjct: 89 R---SAESGPSSAGGASASTPQQLPTMQTGQNP--SDPLTLLNGPMGHGLLNANFNPFAD 143
Query: 127 YGGESEDP--LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQ---- 180
G DP + L P F Q + + N P VL QI NP L + +
Sbjct: 144 MGLNPGDPNMMQGLMDNPAFLQQMSSMMSN----PAVLDQIISMNPQLAAMGPQARQIMQ 199
Query: 181 -EAFVRMLNEPVA 192
+AF +M++ P A
Sbjct: 200 SDAFRQMISNPQA 212
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDR 195
+R ++QQ PE+ VLQQ+ SNP L E+I N EAF+R + +GD+
Sbjct: 295 LRELLQQRPEMAEIVLQQMAXSNPQLAEVIQRNPEAFMRYI---TSGDQ 340
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+ G++ Y A Q LI+ GK+L D L E + ES F+
Sbjct: 11 THFEIEVKPEDTVADVKKNIELVHGTDVYPAAQQMLIHQGKVLKDATTLDENQVAESSFV 70
Query: 76 VVMLSKPK 83
V+MLSK K
Sbjct: 71 VIMLSKNK 78
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
Query: 163 QQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q++G+ NP L+ LI +Q F+R++NEPV G+ NVLG
Sbjct: 266 QELGKQNPHLMRLIQEHQADFLRLINEPVEGE---GNVLG 302
>gi|402085928|gb|EJT80826.1| deubiquitination-protection protein dph1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 424
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 31/167 (18%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LK K+ +E+ A+ Q+LIY+G+++ +D ALS Y I I ++ S
Sbjct: 35 VLDLKNKLAAEEFENIPADRQRLIYSGRVMKNDDALSTYKIKTGNTIHLVKSA------- 87
Query: 89 YSGPSDPTQPAGQESEATR-----PATATSDSMLKVFFER------------VNPYGG-- 129
S PS P Q + + T+ S+ + + R P GG
Sbjct: 88 ASNPSRPAQTSAAAAVPAVPTNMAAGTSASNPLAGLTGARYAGHVPLPSADLFGPDGGMN 147
Query: 130 -ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
SE+ +A + + P QQ QNP+ + ++ QSNP L L
Sbjct: 148 PPSEEQMAEMLSNPAIQQSMNEALQNPDFVNFMI----QSNPMLRNL 190
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 125 NPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFV 184
P ESE A R PQF ++R + QN + LP V+QQI +PA+ E I + E F+
Sbjct: 253 TPSTTESEMRAALSRI-PQFDEIRILYNQNTDTLPVVMQQIALRHPAIYEQIERDPETFL 311
Query: 185 RMLNE 189
++ E
Sbjct: 312 SIMAE 316
>gi|443917644|gb|ELU38315.1| ubiquitin domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 408
Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V +LK+ I +EK S+ A+ Q+LIY+G++L D+ LS Y + + + ++ P
Sbjct: 29 ISTDKTVLELKQAI-AEK-SDVSADRQRLIYSGRVLKDEDVLSTYKVQNAHTVHMVKGAP 86
Query: 83 KPTPAPYSGPSD-----PTQPAGQESEAT-----RPATATSDSMLKVFFERVNPYGGESE 132
KPT S S P+ GQ S T R A + + F NP
Sbjct: 87 KPTGTASSSTSTPTQPLPSMQTGQTSTETLLNGPRGHGALAGLNMNDLFGGANP-----N 141
Query: 133 DP----LAFLRTQPQFQQMRTVVQQNPELLPTVLQQ 164
DP L + + PQF Q + + +P L+ T+L Q
Sbjct: 142 DPNMVCLQNMLSSPQFMQQMSRMMSDPNLMDTILAQ 177
>gi|367052321|ref|XP_003656539.1| hypothetical protein THITE_2121299 [Thielavia terrestris NRRL 8126]
gi|347003804|gb|AEO70203.1| hypothetical protein THITE_2121299 [Thielavia terrestris NRRL 8126]
Length = 446
Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 24/165 (14%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTPA 87
V LK K+ + E Q+LIY+G+I+ D ALS Y I I +V ++ PTPA
Sbjct: 35 VLDLKTKLAGSDFEDTPVERQRLIYSGRIMKDSDALSVYKIKNMNTIHMVKSARSNPTPA 94
Query: 88 PYSGPS-DPTQPAGQESEATRPATATSDSMLKVFFERVNPY------------GG----E 130
S S PT PA ++ A+ ++ SD + + R + GG
Sbjct: 95 ASSAASTTPTPPAVPQNMAS--GSSASDLLAGLTGARFAGHANLPSADLFGADGGMGAPP 152
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
SE+ +A + + P Q NP + ++ +SNPAL +
Sbjct: 153 SEEQMAEMLSNPMIAQTMNEALNNPNFIDYMI----RSNPALASM 193
>gi|291234271|ref|XP_002737072.1| PREDICTED: HLA-B-associated transcript 3-like, partial
[Saccoglossus kowalevskii]
Length = 1294
Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
VK+ KEKI + + A Q+LIY G++L D++ LSEYN+D ++ ++ +P P+
Sbjct: 3 VKEFKEKIANS--VDIPANLQRLIYQGRVLVDEKKLSEYNVDGK--VIHLVQRPPPS 55
>gi|403217619|emb|CCK72112.1| hypothetical protein KNAG_0J00290 [Kazachstania naganishii CBS
8797]
Length = 367
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN+W V+ + V Q KE + G E Q+LIY+GKIL D Q L EY I +
Sbjct: 11 QNRWDVAVASEPGETTVAQFKELVAGVAGVPV--ENQRLIYSGKILKDAQTLEEYKITDG 68
Query: 73 KFI 75
+
Sbjct: 69 HTV 71
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 136 AFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
A L PQF ++R + QN + LP V+QQI +PA+ E I + E F+ +++E
Sbjct: 259 AALSRIPQFDEIRILYNQNTDTLPVVMQQIALRHPAVYEQIERDPEVFLSIMSE 312
>gi|331230664|ref|XP_003327996.1| hypothetical protein PGTG_09290 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306986|gb|EFP83577.1| hypothetical protein PGTG_09290 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 359
Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT-PA 87
V LK+ I + AE Q+LIY+G++L D+ LSEY I I ++ P+PT P
Sbjct: 42 VWDLKKLISESTDPKVQAENQRLIYSGRVLKDESLLSEYKIQSGHSIHMVKGAPRPTNPT 101
Query: 88 PYS 90
P +
Sbjct: 102 PAT 104
>gi|10177007|dbj|BAB10195.1| unnamed protein product [Arabidopsis thaliana]
Length = 902
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++ E V KEKI SE G Q+LI+ G++L DD LSEY+++ + +++ +P
Sbjct: 63 VNKNETVLLFKEKIASETG--VPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLIVRQP 120
Query: 83 KPTPAPYSGPSDPTQPA 99
+ AP SG P+Q A
Sbjct: 121 AES-APSSG--TPSQGA 134
>gi|297795339|ref|XP_002865554.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata]
gi|297311389|gb|EFH41813.1| ubiquitin family protein [Arabidopsis lyrata subsp. lyrata]
Length = 879
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++ E V KEKI SE G Q+LI+ G++L DD LSEY+++ + +++ +P
Sbjct: 40 VNKNETVSLFKEKIASETG--VPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLIVRQP 97
Query: 83 KPTPAPYSG-PSDPTQP 98
+ P SG PS+ P
Sbjct: 98 AES-VPSSGTPSEGATP 113
>gi|240256342|ref|NP_197909.4| ubiquitin-like domain-containing protein [Arabidopsis thaliana]
gi|332006037|gb|AED93420.1| ubiquitin-like domain-containing protein [Arabidopsis thaliana]
Length = 658
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LKE++ S G + E Q+LI GK++ DDQ LS Y++++ + +++ +P +
Sbjct: 43 VPALKEQVASVTG--VVTEQQRLICRGKVMKDDQLLSAYHVEDGHTLHLVVRQPVSESST 100
Query: 89 YSGPSDPTQPAGQESEATR 107
+ +DP AG + R
Sbjct: 101 SNAAADPALSAGDSQGSQR 119
>gi|67538562|ref|XP_663055.1| hypothetical protein AN5451.2 [Aspergillus nidulans FGSC A4]
gi|40743421|gb|EAA62611.1| hypothetical protein AN5451.2 [Aspergillus nidulans FGSC A4]
gi|259485101|tpe|CBF81887.1| TPA: ubiquitin-like protein DskB, putative (AFU_orthologue;
AFUA_6G13420) [Aspergillus nidulans FGSC A4]
Length = 440
Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
L V +LKEK+ S ++ AE Q+LIY+G++L D+ L+ Y I + I ++ S
Sbjct: 28 LPASTPVSELKEKLSSSDYADTPAERQRLIYSGRVLKDNDTLATYKIKDGHTIHLVKS 85
>gi|390594122|gb|EIN03536.1| hypothetical protein PUNSTDRAFT_109298 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 413
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 69/172 (40%), Gaps = 30/172 (17%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V LK+ I + S+ A+ Q+LIY+G++L D+ LS Y I I ++
Sbjct: 26 ISTDKTVGDLKQAIAHK--SDVEADRQRLIYSGRVLKDEDVLSTYKIQSGHTIHMVKGAA 83
Query: 83 K--------------PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY- 127
+ PTPAP PT AGQ + +NP+
Sbjct: 84 RSAGGTSASTSTGAAPTPAPL-----PTMQAGQNVHDPLTQLNGHLGFGNMAVAGLNPFA 138
Query: 128 --GGESEDP--LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
G DP + + PQF Q + V NP+ V+ QI NP L +
Sbjct: 139 DMGLNPNDPNMIQTMMNSPQFLQQMSSVMSNPQ----VIDQIIAMNPQLAAM 186
>gi|30694012|ref|NP_199037.2| ubiquitin family protein [Arabidopsis thaliana]
gi|22654985|gb|AAM98085.1| AT5g42220/K5J14_2 [Arabidopsis thaliana]
gi|30102508|gb|AAP21172.1| AT5g42220/K5J14_2 [Arabidopsis thaliana]
gi|332007398|gb|AED94781.1| ubiquitin family protein [Arabidopsis thaliana]
Length = 879
Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E V KEKI SE G Q+LI+ G++L DD LSEY+++ + +++ +P +
Sbjct: 44 ETVLLFKEKIASETG--VPVGQQRLIFRGRVLKDDHPLSEYHLENGHTLHLIVRQPAES- 100
Query: 87 APYSG 91
AP SG
Sbjct: 101 APSSG 105
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 43.9 bits (102), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
D +VK++ E IQ + + Y A+ Q LI+ GK+L DD L E + E+ F+V+ML + K
Sbjct: 21 DKVADVKKVIESIQEQ--ASYPADQQVLIHQGKVLKDDTTLEENQVVENNFLVIMLRQNK 78
Query: 84 PTPAPYSGPSDPT---QPAGQESEATRPATATS 113
+ + + P+ T P+ Q AT P T+ +
Sbjct: 79 GSSS--AAPAKVTANQAPSTQTVPATPPQTSAA 109
>gi|449456869|ref|XP_004146171.1| PREDICTED: ubiquilin-1-like [Cucumis sativus]
gi|449495107|ref|XP_004159736.1| PREDICTED: ubiquilin-1-like [Cucumis sativus]
Length = 556
Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 40/180 (22%)
Query: 42 SEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQP--A 99
SE + Q+LIY G+IL DDQ L Y + E+ V ++ P +P + P+ T P
Sbjct: 56 SEVPPDQQRLIYKGRILKDDQTLRSYGL-EADHTVHLVRGSAPAASPTN-PATATAPNTG 113
Query: 100 GQESEATRPATATSDSML----------KVF----FERVNPYGGESEDPLAFLRTQPQFQ 145
G + ++ + S+ +F FE + GG F P F+
Sbjct: 114 GPNTTSSNARSVGSNEGGAPGGGLGLESSIFPGLGFEGLGATGG------LFGAGLPDFE 167
Query: 146 QMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
Q++ + +NP ++ P +++ + +NP + E++ N E +LN+P
Sbjct: 168 QVQQQLTRNPNIMREIMNMPAIQNIMNNPDIMRNLIMNNPQMREIMDRNPE-LAHILNDP 226
>gi|321456765|gb|EFX67865.1| hypothetical protein DAPPUDRAFT_8978 [Daphnia pulex]
Length = 73
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
VK+LKE I + G+ AE Q+LIY G++L DD+ LSEY++
Sbjct: 23 VKELKEHIAGDVGTP--AETQRLIYCGRVLQDDKKLSEYDL 61
>gi|238582807|ref|XP_002390045.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
gi|215452995|gb|EEB90975.1| hypothetical protein MPER_10744 [Moniliophthora perniciosa FA553]
Length = 151
Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
LR PQ QQ+R + Q+PE ++QQ+ P L++ + N +AF+R+L+
Sbjct: 35 LRNNPQIQQLREHIAQHPESAQALIQQLAAQYPQLIQTFAQNPDAFIRLLD 85
>gi|170045943|ref|XP_001850549.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167868782|gb|EDS32165.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 643
Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+SH+ V++ + + EKI + Q+LIY G++LSDD+AL EY+++ +V
Sbjct: 1 MSHITVRQFKEHIAEKI------NVAVDMQRLIYCGRVLSDDKALKEYDVNGKVVHLVQR 54
Query: 80 SKP 82
+ P
Sbjct: 55 APP 57
>gi|168044857|ref|XP_001774896.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673790|gb|EDQ60308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1132
Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
V LKE++ S G E Q+LI GK+L DDQ LS YN+++ + ++ +P PT
Sbjct: 114 VPVLKEQLASVAG--VPVENQRLICRGKVLKDDQLLSAYNVEDGHTLHLVARQPPPT 168
>gi|121700264|ref|XP_001268397.1| ubiquitin-like protein DskB, putative [Aspergillus clavatus NRRL
1]
gi|119396539|gb|EAW06971.1| ubiquitin-like protein DskB, putative [Aspergillus clavatus NRRL
1]
Length = 476
Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
L + +V +LK K+ + + ++ AE Q+LIY+G++L D++ L+ Y I E I ++ S
Sbjct: 29 LPLSTQVVELKRKLSAPEYADTPAERQRLIYSGRVLKDNETLATYKIKEGHTIHLVKS 86
>gi|453086583|gb|EMF14625.1| hypothetical protein SEPMUDRAFT_148285 [Mycosphaerella populorum
SO2202]
Length = 418
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 70/170 (41%), Gaps = 18/170 (10%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---L 79
L V +LKEK+ S ++ A+ Q+LIY+G++L D L Y I + + ++
Sbjct: 28 LPATTTVAELKEKLSSSDYADTPADRQRLIYSGRVLKDADTLGSYKIKDGNTVHLVKSAA 87
Query: 80 SKPKPTPAPYSG----PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY----GGES 131
S + PA G P QPA T D + ++ R + G +
Sbjct: 88 SNVRQNPANQGGAASVPPGAGQPASNVPTNIAAGTGAGDPLAQITGARYAGFHGLPGADM 147
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQS--NPALLELISHN 179
+ P QM ++ P QQ+ ++ NPA+L ++ +N
Sbjct: 148 FGADGGMGAPPDPDQMLRLLDD-----PNFAQQMNEAMNNPAVLNMLRNN 192
>gi|168024432|ref|XP_001764740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684034|gb|EDQ70439.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 549
Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 26/169 (15%)
Query: 42 SEYLAEYQKLIYAGKILSDDQALSEYNI--DESKFIV---------VMLSKPKPTPAPYS 90
SE A++Q+LIY G++L D+Q LS Y + D + +V P P P P S
Sbjct: 57 SEIPADHQRLIYKGRVLKDEQTLSSYGLQSDHTVHLVRGAPTSSTSAGADSPSPAPNPTS 116
Query: 91 GPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYG-GESEDPLAFLRTQPQFQQMRT 149
P P P+G S S L P+G G SE + MR
Sbjct: 117 TP-HPANPSGLGSMPGLGGMGFSGLGLGSDGGASPPFGMGPSEFQQVQQQLMQNPNLMRE 175
Query: 150 VVQ--------QNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
++ NPEL+ ++ SNP + E+I N + +LN+P
Sbjct: 176 MMNAPAVQNLMSNPELMRLLI----MSNPQMREIIDRNPD-LAHILNDP 219
>gi|115749054|ref|XP_784301.2| PREDICTED: uncharacterized protein LOC579074 [Strongylocentrotus
purpuratus]
Length = 1178
Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 10 DITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSE 66
DIT V E+ VK+ KEKI GS + A Q+LI+ G++L D++ LSE
Sbjct: 3 DITIKTLDSQTRQFSVSEDLTVKEFKEKI---AGSVAISAGTQRLIFCGQVLKDEKKLSE 59
Query: 67 YNIDESKFIVVMLSKPKPTPAPYSG 91
Y++ +V + P+P SG
Sbjct: 60 YDLHGKVMHLVERAPPRPATTTSSG 84
>gi|295666351|ref|XP_002793726.1| deubiquitination-protection protein dph1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278020|gb|EEH33586.1| deubiquitination-protection protein dph1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 482
Score = 43.5 bits (101), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS-- 80
LD + LK K+ ++ AE Q+LIY+G++L D L+ + + + I ++ S
Sbjct: 29 LDPSTTIGDLKAKLAGADYADVPAERQRLIYSGRVLKDGDTLATHKVKDGHAIHLVKSAV 88
Query: 81 -KPKPTPAPYSGPSDPT--QPAGQESEA----TRPATATSDSMLKVFFERVNPYGGESED 133
+P PT + G + + +PA + A T A T ++ L Y G ++
Sbjct: 89 QRPTPT---FQGSNTASGDRPAQARTLAANVPTNIAAGTGNNPLAGLTGAR--YAGFAQL 143
Query: 134 PLAFLRT-------------------QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLE 174
P A + PQFQ QNP+L+ ++QQ NP L E
Sbjct: 144 PGAGMFGPDGGMGPPPDSEEMINMLENPQFQSTMNEALQNPQLVDLMIQQ----NPMLRE 199
Query: 175 LISHNQE-----AFVRMLNEPVA 192
+ ++ AF RML +P A
Sbjct: 200 MGPSVRQMMQSPAFRRMLTDPNA 222
>gi|147900295|ref|NP_001083439.1| large proline-rich protein bag6-B [Xenopus laevis]
gi|82186719|sp|Q6PA26.1|BAG6B_XENLA RecName: Full=Large proline-rich protein bag6-B; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3-B
gi|38014489|gb|AAH60479.1| MGC68734 protein [Xenopus laevis]
Length = 1116
Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
M A++ D+T V+ E VK+ K I S G E Q+LIY G++L +
Sbjct: 1 MAANEKMDVTVKTLDSQTRTFTVEAEILVKEFKAHISSAVG--ITPEKQRLIYQGRVLQE 58
Query: 61 DQALSEYNIDESKFIVVMLSKPK 83
D+ L+EYN+D +V + P+
Sbjct: 59 DKKLNEYNVDGKVIHLVERAPPQ 81
>gi|168038801|ref|XP_001771888.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676839|gb|EDQ63317.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 545
Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 84/207 (40%), Gaps = 25/207 (12%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD 61
G ++ + + + + V +D+ V LK + + S A+ Q+LIY G++L D+
Sbjct: 19 GSSSNAVVHVRCSNGNKFVVEVDLGATVLTLKGFLVDK--SAIPADQQRLIYKGRVLKDE 76
Query: 62 QALSEYNIDESKFIVVMLSKPKPT------PAPYSGP---SDPTQPAGQESEATRPATAT 112
Q L+ Y + + ++ P + PAP S P S P P G S
Sbjct: 77 QTLNSYGLQSEHTVHLVRGAPPSSTPAGANPAPTSNPTSASPPANPGGLGSAPGLGGLGF 136
Query: 113 SDSMLKVFFERVNPYG-GESEDPLAFLRTQPQFQQMRTVVQ--------QNPELLPTVLQ 163
L P+G G SE + MR ++ NP+L+ T++
Sbjct: 137 PGLGLGSSGGASPPFGMGPSEFQQVQQQLMQNPNLMREMMNMPAVQNLMNNPDLMRTLI- 195
Query: 164 QIGQSNPALLELISHNQEAFVRMLNEP 190
SNP + E+I N + +LN+P
Sbjct: 196 ---MSNPQMREIIERNPD-LAHILNDP 218
>gi|313235388|emb|CBY10903.1| unnamed protein product [Oikopleura dioica]
Length = 349
Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 11 ITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
I NQ V E V QLKEKI + QKLI GK+L D+Q +S +
Sbjct: 7 IPGNQADFVVEDFGENENVGQLKEKIYRDHPKHPEKTNQKLIAGGKLLQDEQEISSLALG 66
Query: 71 ESKFIVVMLSKP------KPTPAPYSGPSDPT 96
S I +++S+ P PAP PS PT
Sbjct: 67 TSNIIHLVISEQAKTSEIAPAPAPEIVPSTPT 98
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 43.5 bits (101), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKSK 78
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 189 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 248
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q + T+ + P +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 249 DQVA-ILTISAFSLNCEP-MLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 298
>gi|367018578|ref|XP_003658574.1| hypothetical protein MYCTH_2294490 [Myceliophthora thermophila ATCC
42464]
gi|347005841|gb|AEO53329.1| hypothetical protein MYCTH_2294490 [Myceliophthora thermophila ATCC
42464]
Length = 445
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+ N T++ +D V LK K+ + A+ Q+LIY+G+I+ D ALS Y I
Sbjct: 19 SSNDKTHTIT-MDESATVLDLKNKLAGADFEDIPADRQRLIYSGRIMKDSDALSVYKIKN 77
Query: 72 SKFI-VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY--- 127
I +V ++ PA S PT A ++ A + D + + R +
Sbjct: 78 MNTIHMVKSARSNAQPAASGSSSTPTPAAVPQNMAA--GSVAGDPLAGLTGARFAGHANL 135
Query: 128 ---------GG----ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLE 174
GG SED LA + + P Q NP + ++ ++NPAL
Sbjct: 136 PSADLFGADGGMGAPPSEDQLADMLSNPMIAQTMNEALNNPNFIDMMI----RTNPALAA 191
Query: 175 L 175
+
Sbjct: 192 M 192
>gi|443925977|gb|ELU44728.1| pre-mRNA splicing factor [Rhizoctonia solani AG-1 IA]
Length = 472
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78
TV L + + L++++Q GS A + + Y GK L+++Q L+ YN+ E IV+
Sbjct: 408 TVPDLPLTLLISTLRDRVQHIVGSSLGASWMRFSYNGKPLTNNQTLASYNLGEGDLIVLD 467
Query: 79 LSKPK 83
+ K K
Sbjct: 468 VRKKK 472
>gi|328850632|gb|EGF99794.1| hypothetical protein MELLADRAFT_112416 [Melampsora larici-populina
98AG31]
Length = 391
Score = 43.1 bits (100), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V LK+ I + L E Q+LIY+G++L D+ LSEY I I ++ P
Sbjct: 41 ISTSKTVLDLKKLISEITDPKVLPESQRLIYSGRVLKDESILSEYKIQSGHSIHMVKGSP 100
Query: 83 KP 84
KP
Sbjct: 101 KP 102
>gi|427793053|gb|JAA61978.1| Putative ubiquilin-1, partial [Rhipicephalus pulchellus]
Length = 594
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
IS + + ++ V + VK+LKE++ E + E LI+AGKIL D++A+S +
Sbjct: 19 ISLVVKTAKEKKVVKVSESASVKELKEQVAKEFDAPL--EQLCLIFAGKILKDNEAISTH 76
Query: 68 NIDESKFIVVMLSKPKPTPAPYSG------PSDPTQPAG 100
NI + + V L P A G PS TQP+G
Sbjct: 77 NIKDG--LTVHLVIRSPASARADGGRRPDEPSSGTQPSG 113
>gi|168007155|ref|XP_001756274.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692784|gb|EDQ79140.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1091
Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D V LKE++ + G E Q+LI GK+L DDQ LS YN+++ + ++ +P
Sbjct: 44 VDKNVAVPALKEQLATVSG--VPVENQRLICRGKVLKDDQLLSAYNVEDGHTLHLVARQP 101
Query: 83 KPT 85
P+
Sbjct: 102 PPS 104
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 43.1 bits (100), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 21 SHLDVQ----EEVKQLKEKIQ-SEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ S+ Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPS 93
VVMLSK K A +GPS
Sbjct: 71 VVMLSKSK--TASSAGPS 86
>gi|317374854|sp|A4IH17.1|BAG6_XENTR RecName: Full=Large proline-rich protein bag6; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3
gi|134023811|gb|AAI35336.1| bat3 protein [Xenopus (Silurana) tropicalis]
Length = 1129
Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + VK+ K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 17 VDAEITVKEFKTHISSDVG--ISPEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 74
Query: 83 K 83
+
Sbjct: 75 Q 75
>gi|350276201|ref|NP_001090878.2| large proline-rich protein bag6 isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 1135
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + VK+ K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 23 VDAEITVKEFKTHISSDVG--ISPEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 80
Query: 83 K 83
+
Sbjct: 81 Q 81
>gi|350276203|ref|NP_001231884.1| large proline-rich protein bag6 isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 1117
Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + VK+ K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 23 VDAEITVKEFKTHISSDVG--ISPEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 80
Query: 83 K 83
+
Sbjct: 81 Q 81
>gi|302691586|ref|XP_003035472.1| hypothetical protein SCHCODRAFT_84668 [Schizophyllum commune H4-8]
gi|300109168|gb|EFJ00570.1| hypothetical protein SCHCODRAFT_84668 [Schizophyllum commune H4-8]
Length = 374
Score = 43.1 bits (100), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 15/158 (9%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V +LK+ I +EK S+ A+ Q+LIY+G++L D+ LS Y I S I ++
Sbjct: 26 ISTDKTVLELKQAI-AEK-SDVEADRQRLIYSGRVLKDEDPLSLYRIASSHTIHMVKGVS 83
Query: 83 KPTPAPYSGPSDPTQ-PAGQESEATR-PATATSDSMLKVFFERVNPY---GGESEDP--L 135
+ + + P+ P Q P Q + P T + + +NP+ G DP +
Sbjct: 84 RSGGSTSAQPTQPQQLPTMQTGQNPHDPLTQLNSHLGFGAMAGINPFQDMGLNPNDPNMM 143
Query: 136 AFLRTQPQF-QQMRTVVQQNPELLPTVLQQIGQSNPAL 172
+ PQF QQM +++ P +L Q+ NP L
Sbjct: 144 QGMLDNPQFVQQMSSMLSN-----PAILDQVAAMNPTL 176
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q Q +R +Q NPEL+ +L+Q+ SNP + LI + EAF+R
Sbjct: 214 QMQLLRAALQSNPELIQPLLEQLAASNPQIASLIQQDPEAFIRTF 258
>gi|317374851|sp|A3KPW9.1|BAG6_DANRE RecName: Full=Large proline-rich protein BAG6; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3
Length = 1160
Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
VKQ KE I + E + Q+LIY GK+L D++ L+EYN+D
Sbjct: 29 VKQFKEHIAAS--VEISVDKQRLIYQGKVLQDERTLTEYNVD 68
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 42.7 bits (99), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
Q Q +R +Q NPEL+ +L+Q+ SNP + +IS + E F+R
Sbjct: 232 QMQLLRAALQSNPELIQPLLEQLSASNPQIANMISEDPEGFIRTF 276
>gi|321437431|gb|ADW83726.1| ubiquitin 1 [Musa acuminata AAA Group]
Length = 546
Score = 42.7 bits (99), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 46 AEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS------KPKPTPAPYSGPSDPTQPA 99
AE Q+LIY G+IL D+Q L Y + + I ++ + + A + +P
Sbjct: 53 AEQQRLIYKGRILKDEQTLQSYGLASNHTIHLIRALTPPAASAEAATASHEASREPNNTI 112
Query: 100 GQESEATRPAT--ATSDSMLKVFFE-RVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPE 156
G E+ + +DS +F VN G L F P+ QM+ + QNP
Sbjct: 113 GVETAVSNEGGQFGGTDSGGMLFRGIGVNRRDGTGSGFLGF--GLPELNQMQQQLAQNPS 170
Query: 157 LL---------------PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
++ P +++ + +NP + E+I N E F +LN+P
Sbjct: 171 MMREIMNMPAVQSLMNNPDLIRGMIMNNPQMREIIDRNPE-FAHILNDP 218
>gi|73972230|ref|XP_859267.1| PREDICTED: large proline-rich protein BAG6 isoform 15 [Canis
lupus familiaris]
gi|345778146|ref|XP_849429.2| PREDICTED: large proline-rich protein BAG6 isoform 2 [Canis lupus
familiaris]
Length = 1131
Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 35 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 91
Query: 83 KPTPAP 88
TP P
Sbjct: 92 PQTPLP 97
>gi|170061787|ref|XP_001866388.1| ubiquilin-1 [Culex quinquefasciatus]
gi|167879885|gb|EDS43268.1| ubiquilin-1 [Culex quinquefasciatus]
Length = 504
Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
E+K+L+ + + S+ A+ LI+AGKI+ D L +NI E + +++ A
Sbjct: 27 EIKELRATVAEQFESD--ADLVCLIFAGKIMKDTDTLKTHNIKEGMTVHLVIKA-----A 79
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQ- 146
P S P P +P PA + ++ G + F+ Q + Q
Sbjct: 80 PRSEPEGPRRP---------PADISQTPFGLNQLGGLSALGALGGNQTNFMDLQSRMQHE 130
Query: 147 -------MRTV-----VQQ---NPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
MRTV VQQ NPE ++QI SNP + +L+ N E MLN P
Sbjct: 131 LLGNPDLMRTVLDNPLVQQMMNNPE----TMRQIVTSNPQMQDLMQRNPE-ISHMLNNP 184
>gi|322705584|gb|EFY97169.1| deubiquitination-protection protein dph1 [Metarhizium anisopliae
ARSEF 23]
Length = 626
Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +LK K+ + E Q+LIY+G+++ +D+ L YNI ++ I ++
Sbjct: 220 VSELKTKLAGQDFEHIPVERQRLIYSGRVMKNDETLGSYNIKQNNTIHMV---------- 269
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFL 138
S S+PTQ T+TS S + + ++ G DPLA L
Sbjct: 270 KSAASNPTQ-----------QTSTSGSTPRAVPDNIS-AGTNPNDPLAGL 307
>gi|41152050|ref|NP_958445.1| large proline-rich protein BAT3 [Danio rerio]
gi|30851615|gb|AAH52476.1| HLA-B-associated transcript 3 [Danio rerio]
Length = 1209
Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++ Q VK KE I G + Q+LIY G++L D++ L+EYN+D +V + P
Sbjct: 25 VEAQMTVKDFKEHISPSVG--IPVDKQRLIYQGRVLQDEKTLTEYNVDGKVIHLVERAPP 82
Query: 83 KPT 85
+ T
Sbjct: 83 QTT 85
>gi|157108363|ref|XP_001650192.1| hypothetical protein AaeL_AAEL014998 [Aedes aegypti]
gi|108868547|gb|EAT32772.1| AAEL014998-PA [Aedes aegypti]
Length = 644
Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V+Q KE+I +EK + + + Q+LIY G++LSDD+AL EY+++ +V + P
Sbjct: 24 VRQFKEQI-AEKINVSV-DMQRLIYCGRVLSDDKALKEYDVNGKVVHLVQRAPPS 76
>gi|115390122|ref|XP_001212566.1| deubiquitination-protection protein dph1 [Aspergillus terreus
NIH2624]
gi|114194962|gb|EAU36662.1| deubiquitination-protection protein dph1 [Aspergillus terreus
NIH2624]
Length = 469
Score = 42.4 bits (98), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
L V +LKEK+ + + ++ A Q+LIY+G++L D++ L+ Y I + I ++ S
Sbjct: 29 LPASTPVSELKEKLATSEYADTPASRQRLIYSGRVLKDNETLATYKIKDGHTIHLVKS 86
>gi|332022790|gb|EGI63063.1| Large proline-rich protein BAT3 [Acromyrmex echinatior]
Length = 1228
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKG-SEYLAEY-------QKLIYAGKILSDDQALSEYNID 70
TV LD Q V L++ + +G EY+AE Q+LIY G++L D++ L++Y+++
Sbjct: 5 TVKTLDSQNHVFSLEDDQITVRGFKEYIAESVAVPADSQRLIYCGRVLQDEKKLNDYDVN 64
Query: 71 ESKFIVVMLSKPKP 84
+V + P+P
Sbjct: 65 GKVIHLVQRAPPQP 78
>gi|226510234|ref|NP_001150353.1| LOC100283983 [Zea mays]
gi|195638608|gb|ACG38772.1| ubiquilin-1 [Zea mays]
gi|195644430|gb|ACG41683.1| ubiquilin-1 [Zea mays]
gi|224029247|gb|ACN33699.1| unknown [Zea mays]
gi|413956941|gb|AFW89590.1| Ubiquilin-1 [Zea mays]
Length = 533
Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 46 AEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTPAPYSGPSDPTQPAGQESE 104
A Q+LIY G+IL D+Q L+ Y ++ I +V + PT + +PT A
Sbjct: 54 APQQRLIYKGRILKDEQTLASYGVETDHTIHMVRGAVLSPTSTAPAANQEPTTAA----P 109
Query: 105 ATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELL------ 158
A+ PAT + + G + F P QM+ + +NP L+
Sbjct: 110 ASSPATGLGGLLQSLGT-----TGAAANSEGLFGSAPPGLDQMQQQLAENPNLMREMMNM 164
Query: 159 ---------PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
P +++ I +NP + ELI N + +LN+P
Sbjct: 165 PLMQNLMNNPELIRSIIMNNPQMRELIDRNPD-LAHVLNDP 204
>gi|357145512|ref|XP_003573668.1| PREDICTED: uncharacterized protein LOC100846934 [Brachypodium
distachyon]
Length = 693
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LKEKI + G L+E Q+LI G++L DD+ LS Y++++ + +++ +P PA
Sbjct: 43 VPLLKEKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRQPG-QPA- 98
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVN-PYGGE 130
SG + P+ + P A S + E VN GGE
Sbjct: 99 TSGNAGNEAPSANSAHHHGPTVARS-----IVLEAVNLDQGGE 136
>gi|428179981|gb|EKX48850.1| hypothetical protein GUITHDRAFT_151707, partial [Guillardia theta
CCMP2712]
Length = 163
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 12 TQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
T Q +Q H++ Q+ VK LK ++ + EY E+Q+L+ GK+L DD+ LSEY I
Sbjct: 62 TTFQCKQLTYHVEFQKYFLVKNLKVLLEKQV-PEYKHEFQRLVLKGKVLEDDRELSEYGI 120
Query: 70 DES 72
+ S
Sbjct: 121 NAS 123
>gi|390340803|ref|XP_786397.2| PREDICTED: large proline-rich protein BAG6-like isoform 2
[Strongylocentrotus purpuratus]
Length = 125
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 10 DITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSE 66
DIT V E+ VK+ KEKI GS + A Q+LI+ G++L D++ LSE
Sbjct: 3 DITIKTLDSQTRQFSVSEDLTVKEFKEKI---AGSVAISAGTQRLIFCGQVLKDEKKLSE 59
Query: 67 YNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPA 109
Y++ +V + P+P SG S Q G S P+
Sbjct: 60 YDLHGKVMHLVERAPPRPATTTSSG-SASQQGRGGSSTTNAPS 101
>gi|336365221|gb|EGN93572.1| hypothetical protein SERLA73DRAFT_97505 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377784|gb|EGO18944.1| hypothetical protein SERLADRAFT_364132 [Serpula lacrymans var.
lacrymans S7.9]
Length = 383
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 77/175 (44%), Gaps = 23/175 (13%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD----DQALSEYNIDESKFI--- 75
+ + V +LK+ I +EK S+ A+ Q+LIY+ +L+D + LS Y I S I
Sbjct: 26 ISTDKTVLELKQAI-AEK-SDVEADRQRLIYSAGLLNDTLQDEDVLSVYKIQSSHTIHMV 83
Query: 76 -VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGES 131
V S T S PT AGQ P T + M +NP+ G
Sbjct: 84 KGVSRSGASSTQQAASSQPLPTMQAGQNPH--DPLTQLNSHMGYGLMAGLNPFADMGLNP 141
Query: 132 EDP--LAFLRTQPQF-QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
DP L + + PQF QQM +V+ P VL QI SNP L + +E F
Sbjct: 142 NDPNMLQSMMSSPQFFQQMSSVMSN-----PAVLDQIIASNPQLAAMAPQVREVF 191
>gi|224081475|ref|XP_002306425.1| predicted protein [Populus trichocarpa]
gi|222855874|gb|EEE93421.1| predicted protein [Populus trichocarpa]
Length = 549
Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI--DESKFIVVMLS 80
+ + V K+ I ++ + ++ Q+LIY G+IL DDQ L Y + D + +V +
Sbjct: 38 ISLSSTVDSFKQLIANQ--CDVPSDQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRGFA 95
Query: 81 KPKP---TPAPYSGPSDPTQPAGQESEATRPATATSDSML-KVFFERVNP---YGGESED 133
P T A +G S+ T P TR A +T D L F + P G
Sbjct: 96 PSAPVNATAATNTGGSN-TAPTN-----TRAAGSTDDGELGGSGFGSLFPGLGLNGLGGS 149
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISH 178
P+F+Q++ + QNP ++ P +++ + +NP + E+I
Sbjct: 150 GGLLGAGLPEFEQVQQQLTQNPNIMRDIMNTPVVQNLMNNPEIMRNLLMNNPQMREIIDR 209
Query: 179 NQEAFVRMLNEP 190
N E +LN+P
Sbjct: 210 NPE-LAHILNDP 220
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
R F +R + NP+ LP +LQ IG+++P+ LE I NQ F+ L
Sbjct: 235 FRNSTFFNAIRDMALSNPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAAL 284
>gi|157115107|ref|XP_001658115.1| hypothetical protein AaeL_AAEL007082 [Aedes aegypti]
gi|108877019|gb|EAT41244.1| AAEL007082-PA, partial [Aedes aegypti]
Length = 1099
Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
V+Q KE+I +EK + + + Q+LIY G++LSDD+AL EY+++
Sbjct: 3 VRQFKEQI-AEKINVSV-DMQRLIYCGRVLSDDKALKEYDVN 42
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
LA + Q +R +Q NPEL+ +L+Q+ SNP + LI + EAF+R
Sbjct: 238 LAEMGDDEQMNLLRASLQSNPELIQPILEQLASSNPRIATLIQQDPEAFIRTF 290
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+++ + V KEK+ +EK E A K +Y+GK+LSD++ L E+ I E I+ M+S
Sbjct: 16 EVELTDTVLATKEKLAAEKDCE--APQLKFVYSGKVLSDEKTLEEFKIKEGDSIIFMIS 72
>gi|367009798|ref|XP_003679400.1| hypothetical protein TDEL_0B00600 [Torulaspora delbrueckii]
gi|359747058|emb|CCE90189.1| hypothetical protein TDEL_0B00600 [Torulaspora delbrueckii]
Length = 369
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 14/104 (13%)
Query: 11 ITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
Q++W+ +V + ++ V + K++I K SE A Q+LIY+GKIL DDQ + Y I
Sbjct: 9 CGQSKWEVSV---NPEKTVAEFKDEI--AKVSEIPAANQRLIYSGKILKDDQNVESYKIQ 63
Query: 71 ESKFIVVMLSKPKP--TPAPYSGPSDPTQPAGQESEATRPATAT 112
+ I ++ S T A S S QES P +AT
Sbjct: 64 DGHAIHLVKSGGGGGNTAAKASTSS-------QESNTAAPGSAT 100
>gi|120613341|ref|YP_973019.1| ubiquitin [Acidovorax citrulli AAC00-1]
gi|120591805|gb|ABM35245.1| ubiquitin [Acidovorax citrulli AAC00-1]
Length = 287
Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI--DESKFIVVM 78
LDV+ + ++ +K KIQ +K + E Q+LI+AGK L D + LS+YNI D + +V+
Sbjct: 54 LDVEPSDSIENVKAKIQDQK--DIPPERQRLIFAGKQLEDGRTLSDYNIQKDSTLHLVLR 111
Query: 79 LS 80
LS
Sbjct: 112 LS 113
>gi|414584960|tpg|DAA35531.1| TPA: hypothetical protein ZEAMMB73_783009 [Zea mays]
Length = 167
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSG 91
LKEKI + G L+E Q+LI G++L DD+ LS Y++++ + +++ P + +
Sbjct: 45 LKEKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRHPGQSATFGNA 102
Query: 92 PSDP-TQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFL 138
++ T +G+ P A S V E VN G SE P AF+
Sbjct: 103 ATEANTSNSGRRHG---PTVARS-----VVLEAVNVDPGSSELP-AFV 141
>gi|327266500|ref|XP_003218043.1| PREDICTED: hypothetical protein LOC100555197 [Anolis
carolinensis]
Length = 1135
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
V+EE VK+ KE I S AE Q+LIY G++L DD+ L EYN+ +V +
Sbjct: 21 FTVEEEITVKEFKEHIASS--VNIPAEKQRLIYQGRVLQDDKKLKEYNVGGKVIHLVERA 78
Query: 81 KPK 83
P+
Sbjct: 79 PPQ 81
>gi|313246426|emb|CBY35335.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP---- 82
E V QLKEKI + QKLI GK+L D+Q +S + S I +++S+
Sbjct: 42 ENVGQLKEKIYRDHPKHPEKTNQKLIAGGKLLQDEQEISSLALGTSNIIHLVISEQAKTS 101
Query: 83 --KPTPAPYSGPSDPT 96
P PAP PS PT
Sbjct: 102 EIAPAPAPEIVPSTPT 117
>gi|378730763|gb|EHY57222.1| hypothetical protein HMPREF1120_05268 [Exophiala dermatitidis
NIH/UT8656]
Length = 472
Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LK K+ SE+ + A Q+LIY+GK+L D+ L+++N+ E + ++ S
Sbjct: 37 LKNKLASEEYANVPASAQRLIYSGKVLKDNDTLAQHNVKEGNTMHLVKS 85
>gi|326319441|ref|YP_004237113.1| hypothetical protein Acav_4667 [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376277|gb|ADX48546.1| hypothetical protein with ubiquitin-like domain [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 287
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI--DESKFIVVM 78
LDV+ + ++ +K KIQ +KG E Q+LI+AGK L D LS+YNI D + +V
Sbjct: 54 LDVEPSDSIEDVKSKIQDQKGIP--PEQQRLIFAGKQLEDGHTLSDYNIQKDSTLHLVQR 111
Query: 79 LSK 81
LS+
Sbjct: 112 LSQ 114
>gi|401410066|ref|XP_003884481.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
gi|325118899|emb|CBZ54451.1| hypothetical protein NCLIV_048800 [Neospora caninum Liverpool]
Length = 405
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 18 QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q V L+ + VKQ+KEK ++ +E + Q+LIY G+IL DD +S +++ + I
Sbjct: 15 QFVLELEPEWTVKQVKEKCATQ--TEIPVQAQRLIYKGRILKDDDLISTHDVQDGHII 70
>gi|170112764|ref|XP_001887583.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637485|gb|EDR01770.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 377
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 29/184 (15%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +LK+ I +EK S+ A+ Q+LIY+G++L D+ LS Y I S I ++ + +
Sbjct: 30 KSVLELKQAI-AEK-SDVGADRQRLIYSGRVLKDEDPLSTYKIQSSHTIHMVKGIARSSG 87
Query: 87 APYSGPSD---------PTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDP--- 134
+ S PT GQ P T + M +NP+G +P
Sbjct: 88 GASNSSSPTSNSTPQPLPTMQTGQNPH--DPLTQLNSHMGFGAMAGLNPFGDMGLNPNDP 145
Query: 135 --LAFLRTQPQF-QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEA-----FVRM 186
+ + P+F QQM T++Q P ++ Q+ NP + + +H +E F M
Sbjct: 146 NMMQTIMNSPEFLQQMSTMLQN-----PAIVDQVIAMNPNMAGMGAHVRETLQSEQFRNM 200
Query: 187 LNEP 190
++ P
Sbjct: 201 ISNP 204
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 52/216 (24%)
Query: 22 HLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
L+VQ + V +KEKI EK ++ QKL+ G +L DDQ + + I E F+VVM+
Sbjct: 14 ELEVQPTDSVLNIKEKI--EKVKQFEIAQQKLLRKGTLLVDDQTVGDLGIQEKDFLVVMV 71
Query: 80 SKPK----------------------------PTPAPYSGPSDPTQPAGQESEATRP--- 108
+ K P P + P+ G E +
Sbjct: 72 NVKKGPPQQQPVQQQAQQPPQQPQPVQPQQPIEVPKPLNNPTTSNMVTGSEYDQAIQNLI 131
Query: 109 ----ATATSDSMLKVFFERVNPYGGESEDPLAFLRTQP-------------QFQQMRTVV 151
A + ++ +K F N + L + P Q +R
Sbjct: 132 QMGFAKSECEAAMKAAFNNQNRAIEYLLNGLPVIDQPPPQPALNANQVDQNILQLLREQF 191
Query: 152 QQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
QNP+ + +QQ+ Q+NP L + I N E +++L
Sbjct: 192 MQNPQAVLQSIQQLQQTNPQLYQQIQQNPETLIQLL 227
>gi|344239188|gb|EGV95291.1| Large proline-rich protein BAT3 [Cricetulus griseus]
Length = 953
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPAT 110
T P S + AT P T
Sbjct: 90 PQTQLPSGASSGTGSASAPHGGATLPGT 117
>gi|195375766|ref|XP_002046671.1| GJ13010 [Drosophila virilis]
gi|194153829|gb|EDW69013.1| GJ13010 [Drosophila virilis]
Length = 1406
Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
+D + ++Q KE+I +EK + AE Q++IY G++L+DD+ + EY++D
Sbjct: 19 IDNELTIRQFKEQI-AEK-TNIAAENQRIIYQGRVLADDKQVKEYDVD 64
>gi|312376720|gb|EFR23727.1| hypothetical protein AND_12363 [Anopheles darlingi]
Length = 1487
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
Q V+Q KE+I + + Q+LIY G++L+DD+ L +Y++D +V ++ +P P+
Sbjct: 48 QITVRQFKEEIAVKI--NIAVDMQRLIYCGRVLADDKPLKDYDLDGK--VVHLVQRPPPS 103
>gi|452983008|gb|EME82766.1| hypothetical protein MYCFIDRAFT_164107 [Pseudocercospora fijiensis
CIRAD86]
Length = 436
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 29/175 (16%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYL---AEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
L V LK+K+ GSEY E Q+LIY+G++L D L Y I + + ++
Sbjct: 28 LPASTTVADLKQKL---SGSEYANVPPESQRLIYSGRVLKDADTLGSYKIKDGNTVHLVK 84
Query: 80 SKP---KPTPAPYSG---PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESED 133
S P + PA G P QPA T + + ++ R Y G
Sbjct: 85 SAPSNQRQAPANQGGSAVPPGAGQPASNVPSNIAAGTGAGNPLAQLTGAR---YAGFHGL 141
Query: 134 PLA-------FLRTQPQFQQMRTVVQQNPELLPTVLQQIGQS--NPALLELISHN 179
P A + P QM +++ P QQ+ ++ NPA+L+++ +N
Sbjct: 142 PGADMFGADGGMGAPPNPDQMLRLLED-----PNFAQQMNEAMNNPAVLDMLRNN 191
>gi|301117026|ref|XP_002906241.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]
gi|262107590|gb|EEY65642.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]
Length = 268
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
V QLKE + +E G Q+LIY G++L +DQ LS Y++++ + +++ PT
Sbjct: 47 VPQLKELVAAETG--VTLARQRLIYRGRVLKNDQTLSAYSLEDGHVLHLVVRAVPPT 101
>gi|195125687|ref|XP_002007309.1| GI12868 [Drosophila mojavensis]
gi|193918918|gb|EDW17785.1| GI12868 [Drosophila mojavensis]
Length = 1429
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%), Gaps = 2/48 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
+D + ++Q K++I +EK + AE Q++IY G++LSDD+ + EY++D
Sbjct: 19 IDNELTIRQFKDQI-AEK-TNIAAENQRIIYQGRVLSDDKQVKEYDVD 64
>gi|326512962|dbj|BAK03388.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 692
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSG 91
LK+KI + G L+E Q+LI G++L DD+ LS Y++++ + +++ +P A S
Sbjct: 48 LKDKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRQPGQPAASGS- 104
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLA----FLRTQPQFQ 145
AG E+ + ++ + E V+ G LA L T PQ Q
Sbjct: 105 -------AGNEANVSNSTRRHGRTVRSIVLEAVDLEQGSEFSSLAQILQSLLTSPQVQ 155
>gi|167998815|ref|XP_001752113.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696508|gb|EDQ82846.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 76
Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H D+Q E V +K KI+ +G + Q LI+ GK+L D+ +++ + E+ F+
Sbjct: 11 NHFDLQVAEDELVSSVKRKIEGSQGKDAFPCAQQLLIHQGKVLKDETTMADNKVAENGFL 70
Query: 76 VVMLSK 81
VVML+K
Sbjct: 71 VVMLTK 76
>gi|321252292|ref|XP_003192355.1| nuclear-enriched ubiquitin-like polyubiquitin-binding protein;
Dsk2p [Cryptococcus gattii WM276]
gi|317458823|gb|ADV20568.1| Nuclear-enriched ubiquitin-like polyubiquitin-binding protein,
putative; Dsk2p [Cryptococcus gattii WM276]
Length = 409
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +LKE I S+ E + Q+LIY+GK+L D++ +S Y I I ++ KP+
Sbjct: 33 KNVAELKELIASKCDVE--KDRQRLIYSGKVLKDEETISSYKIQNGHTIHMVKGAAKPS- 89
Query: 87 APYSGPSDPTQPAGQESEATR 107
+ PAGQ S+ R
Sbjct: 90 --------SSTPAGQASQPPR 102
>gi|281210056|gb|EFA84224.1| UAS domain-containing protein [Polysphondylium pallidum PN500]
Length = 491
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 29/170 (17%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ VQE + L EK S E Q++IY+G +L D Q L E+NI + + ++ S
Sbjct: 22 ITVQEFKRLLSEK------SNIAPEQQRIIYSGHVLKDHQKLEEFNIKDGHTVHLVKSAA 75
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQP 142
P P +P + Q P +++M ++ NP E + P
Sbjct: 76 PPPQPPTEQVPNPNTASSQPP----PIPGMTNNMSQML---QNPMMQE-------MLNSP 121
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
FQ + NP+ V +++ SNP + E+++ N E ++LN+P A
Sbjct: 122 AFQS----IFDNPD----VFKEMIMSNPEMREVLNRNPE-MNQILNDPRA 162
>gi|302504589|ref|XP_003014253.1| hypothetical protein ARB_07558 [Arthroderma benhamiae CBS 112371]
gi|291177821|gb|EFE33613.1| hypothetical protein ARB_07558 [Arthroderma benhamiae CBS 112371]
Length = 622
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 47/205 (22%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML--------- 79
V ++K+ + E+ + E Q+LIY+G++L D L+ + + E I ++
Sbjct: 169 VAEIKQILAGEEYANVPPERQRLIYSGRVLKDTDTLAAHKVKEGHTIHLVKSSAPAGSSS 228
Query: 80 -------------SKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF------ 120
S T + +G + P+G T A T +SML
Sbjct: 229 SASGSANTTAASGSGSNTTASSAAGRGAQSTPSGAAGVPTNLAAGTGNSMLAGLTGARYA 288
Query: 121 -FERV------NPYGGES----EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSN 169
F ++ P GG D + + PQFQ QNP+++ ++QQ N
Sbjct: 289 GFSQLPGAGMFGPDGGMGPLPDTDQILSMMENPQFQSTMNEALQNPQIIDMMIQQ----N 344
Query: 170 PALLELISHNQ----EAFVRMLNEP 190
P L ++ + Q F RML +P
Sbjct: 345 PMLRDVPNARQILQSPEFRRMLTDP 369
>gi|58263394|ref|XP_569107.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108578|ref|XP_777240.1| hypothetical protein CNBB4700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259925|gb|EAL22593.1| hypothetical protein CNBB4700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223757|gb|AAW41800.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 396
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +LK+ I S+ E + Q+LIY+GK+L D++ +S Y I I ++ KP+
Sbjct: 33 KNVAELKQLIASKCDVEK--DRQRLIYSGKVLKDEETISSYKIQNGHTIHMVKGAAKPS- 89
Query: 87 APYSGPSDPTQPAGQESEATR-PATATSDSMLKVFFERV----------NPYGG-----E 130
+ PAGQ S+ R P T ++ + V NP+ G
Sbjct: 90 --------SSTPAGQASQPPRLPQMGTGLNVGSNPIDNVENIHHGLAGFNPFTGVQGLEN 141
Query: 131 SEDPLAF--LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
DP A + P+F + + + PE V+ QI SNP L +
Sbjct: 142 LNDPNAMSNMMQSPEFLRSMSDLMSRPE----VVDQIIASNPQLASM 184
>gi|326502796|dbj|BAJ99026.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 692
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 14/118 (11%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSG 91
LK+KI + G L+E Q+LI G++L DD+ LS Y++++ + +++ +P A S
Sbjct: 48 LKDKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRQPGQPAASGS- 104
Query: 92 PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLA----FLRTQPQFQ 145
AG E+ + ++ + E V+ G LA L T PQ Q
Sbjct: 105 -------AGNEANVSNSTRRHGRTVRSIVLEAVDLEQGSEFSSLAQILQSLLTSPQVQ 155
>gi|387593726|gb|EIJ88750.1| hypothetical protein NEQG_01440 [Nematocida parisii ERTm3]
gi|387597387|gb|EIJ95007.1| hypothetical protein NEPG_00532 [Nematocida parisii ERTm1]
Length = 303
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 10/101 (9%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V QLKE+I SEK A+ +LI+ GK+L D +AL Y ++E + +++ +P
Sbjct: 27 VLQLKEQI-SEKTQIPTAKI-RLIHVGKLLKDQEALKTYKLEEESTVHLVVPSSDKKSSP 84
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGG 129
S S P+ A ES++T + + + NP GG
Sbjct: 85 VSSASQPSAQASTESKSTESLNSGASN--------SNPLGG 117
>gi|67475603|ref|XP_653492.1| ubiquitin-like protein [Entamoeba histolytica HM-1:IMSS]
gi|56470449|gb|EAL48106.1| ubiquitin-like protein [Entamoeba histolytica HM-1:IMSS]
Length = 327
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 12/84 (14%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT--- 85
V +KEKI +++ + E+ +LI+AG++L DD+ LS I+ + + ++ S+ PT
Sbjct: 28 VSGIKEKIHNQQPD--VGEF-RLIFAGRVLKDDEVLSTLGINNNVTLHLVRSR-SPTSVP 83
Query: 86 --PAPYSGP---SDPTQPAGQESE 104
P P S P S PTQP Q +E
Sbjct: 84 SQPTPNSQPTPNSQPTQPIFQPNE 107
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA-------PYSGPSDPTQPAGQE 102
KLI++GK+L DDQ +S + ++ +++M+SK K TP+ P P Q QE
Sbjct: 42 KLIFSGKVLKDDQTVSSCGLKDNDQVIMMISKKKATPSATKVTEPPQQSEEQPVQEPSQE 101
Query: 103 SE 104
E
Sbjct: 102 QE 103
>gi|384250605|gb|EIE24084.1| hypothetical protein COCSUDRAFT_53216 [Coccomyxa subellipsoidea
C-169]
Length = 510
Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSK 81
+DV+ E+ + K + + A+ Q+LIY G++L DD+ + Y + + +V
Sbjct: 19 IDVRNEMTIAEVKSLVAEKANIAADNQRLIYKGQVLKDDRTVESYGVAADHVLHLVRARA 78
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQ 141
P TP P S + P G ++ + ++ + +N
Sbjct: 79 PSTTPQPSSAATSPPVALGPDAGLGNLGLGGMGNNPELMSQMMN---------------S 123
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
P Q M +PELL +L Q NP + +++ N E F +++N P
Sbjct: 124 PIMQNM----MNDPELLRNMLSQ----NPMVSQIMERNPE-FAQIMNNP 163
>gi|414584959|tpg|DAA35530.1| TPA: hypothetical protein ZEAMMB73_783009 [Zea mays]
Length = 677
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
V LKEKI + G L+E Q+LI G++L DD+ LS Y++++ + +++ P
Sbjct: 42 VPLLKEKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRHP 93
>gi|448524417|ref|XP_003868982.1| ubiquitin-like polyubiquitin-binding protein [Candida orthopsilosis
Co 90-125]
gi|380353322|emb|CCG26078.1| ubiquitin-like polyubiquitin-binding protein [Candida
orthopsilosis]
Length = 359
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 72/160 (45%), Gaps = 27/160 (16%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTP 86
++ +LKE I +EK S A Q+LIY+GK+L D + Y I S I +V + PTP
Sbjct: 25 KISELKELI-AEK-SSIPASSQRLIYSGKVLKDTETAESYKIQNSHTIHLVKSANAAPTP 82
Query: 87 APYSGPSDPTQPAGQESEATRPAT-----ATSDSMLKVFFER------------VNPYGG 129
A + S TQ A Q + P+ + + + + R P GG
Sbjct: 83 A--TSESSTTQTAAQTPSSNIPSNIAAGQGSFNPLADLTGARYAGYTQLPSASLFGPDGG 140
Query: 130 ESE---DP--LAFLRTQPQFQQMRTVVQQNPELLPTVLQQ 164
+ DP L + + P FQ+ + NP++L ++QQ
Sbjct: 141 MNSNLPDPEQLTSMMSNPMFQEQLNAMLSNPQMLDFMIQQ 180
>gi|327309052|ref|XP_003239217.1| deubiquitination-protection protein dph1 [Trichophyton rubrum CBS
118892]
gi|326459473|gb|EGD84926.1| deubiquitination-protection protein dph1 [Trichophyton rubrum CBS
118892]
Length = 476
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 46/210 (21%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI------- 75
L V ++K+ + E+ + E Q+LIY+G++L D L+ + + E I
Sbjct: 24 LKPSSTVAEIKQILAGEEYANVPPERQRLIYSGRVLKDTDTLASHKVKEGHTIHLVKSSA 83
Query: 76 --------------VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF- 120
S T + +G + P+G T A T +SML
Sbjct: 84 PAGSSSGGSGSANTTTAGSSSNTTASNAAGRGTQSTPSGAAGVPTNLAAGTGNSMLAGLT 143
Query: 121 ------FERV------NPYGGES----EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQ 164
F ++ P GG D + + PQFQ QNP+++ ++QQ
Sbjct: 144 GARYAGFSQLPGAGMFGPDGGMGPLPDTDQILSMMENPQFQSTMNEALQNPQIIDMMIQQ 203
Query: 165 IGQSNPALLELISHNQ----EAFVRMLNEP 190
NP L ++ + Q F RML +P
Sbjct: 204 ----NPMLRDVPNARQILQSPEFRRMLTDP 229
>gi|444319370|ref|XP_004180342.1| hypothetical protein TBLA_0D03230 [Tetrapisispora blattae CBS
6284]
gi|387513384|emb|CCH60823.1| hypothetical protein TBLA_0D03230 [Tetrapisispora blattae CBS
6284]
Length = 375
Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
QN W + + +K K+KI SE A Q+LIY+GKIL DDQ + Y I +
Sbjct: 11 QNTWDVEI---EASSTIKDFKDKIAIV--SEIPAPNQRLIYSGKILKDDQTIESYKIQDG 65
Query: 73 KFIVVMLS 80
I ++ S
Sbjct: 66 HSIHMVKS 73
>gi|307108562|gb|EFN56802.1| hypothetical protein CHLNCDRAFT_51574 [Chlorella variabilis]
Length = 979
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ ++ +K KIQ ++G + Q+LI+AGK L D + L++YNI + + + L +
Sbjct: 243 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLDLHRIVEWQ 300
Query: 87 APYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQ 146
+G + P P Q R A+A + +M+ +PL ++T+ Q Q
Sbjct: 301 FQRAGSTHPC-PCWQNEMIQRAASAGAATMMIT-------------NPLWVIKTRLQTQN 346
Query: 147 M--RTVVQQNPEL 157
M R NP L
Sbjct: 347 MGIRMGASGNPAL 359
>gi|113679253|ref|NP_001038845.1| uncharacterized protein LOC751663 [Danio rerio]
gi|112418914|gb|AAI22263.1| Zgc:153389 [Danio rerio]
Length = 156
Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
VKQ KE I + E + Q+LIY GK+L D++ L+EYN+D
Sbjct: 29 VKQFKEHIAA--SVEISVDKQRLIYQGKVLQDERTLTEYNVD 68
>gi|307173510|gb|EFN64420.1| Large proline-rich protein BAT3 [Camponotus floridanus]
Length = 1194
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKG-SEYLAEY-------QKLIYAGKILSDDQALSEYNID 70
TV LD Q V +++ + +G E++AE Q+LIY G++L DD+ L++Y+++
Sbjct: 5 TVKTLDSQNHVFSIEDDQITVRGFKEHIAESVAVSADSQRLIYCGRVLQDDKKLNDYDVN 64
Query: 71 ESKFIVVMLSKPKP 84
+V + P+P
Sbjct: 65 GKVIHLVQRAPPQP 78
>gi|255946768|ref|XP_002564151.1| Pc22g01060 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591168|emb|CAP97394.1| Pc22g01060 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 463
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
V LK+K+ S + ++ AE Q+LIY+G++L D + L Y I + I ++ S
Sbjct: 35 VSDLKQKLSSPEYADTPAERQRLIYSGRVLKDTETLEAYKIKDGHTIHLVKS 86
>gi|320162850|gb|EFW39749.1| polyubiquitin 5 [Capsaspora owczarzaki ATCC 30864]
Length = 218
Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 91 LDVESSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Query: 81 KPKPTPAPYSGPSDPT 96
P+ G S T
Sbjct: 149 LRGGAKCPFEGCSAKT 164
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSGP-----SDPTQPAGQESE 104
KLIY+GK+L D + +SE + + +V M+S+ K T + P + T PAG+ S
Sbjct: 43 KLIYSGKVLQDSKTVSECGLKDGDQVVFMISQKKSTKTKVTEPPAAPETATTVPAGEPS- 101
Query: 105 ATRPATATSDSMLKVFFERVNP 126
T ATA++D+ E + P
Sbjct: 102 -TEQATASADAPTAPAAEELQP 122
Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
+R VV NPE L +L+ I P L E I N E FV ML E V GD
Sbjct: 264 LRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV-GD 310
>gi|350414433|ref|XP_003490316.1| PREDICTED: large proline-rich protein BAG6-like [Bombus
impatiens]
Length = 1167
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKG-SEYLAEY-------QKLIYAGKILSDDQALSEYNID 70
TV LD Q L++ + +G EY+AE Q+LIY G++L D++ L++Y+++
Sbjct: 5 TVKTLDSQNHTFSLEDDQITVRGFKEYIAETVAVPADSQRLIYCGRVLQDEKKLNDYDVN 64
Query: 71 ESKFIVVMLSKPKP 84
+V + P+P
Sbjct: 65 GKVIHLVQRAPPQP 78
>gi|4587081|dbj|BAA76607.1| BAT3 [Rattus norvegicus]
Length = 1098
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I++ +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIRASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|326493442|dbj|BAJ85182.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 956
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+D E V LKEKI G E Q+LI+ G++L DD LSEY++++
Sbjct: 41 RVDKNETVLNLKEKIVDVAG--IPVEQQRLIFRGRVLKDDHLLSEYHLED 88
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
+R +Q PEL+ +VLQ+I SNP +LI + EAF+ L
Sbjct: 234 LRAAIQSEPELVQSVLQEIAASNPQAAQLIEQDPEAFISTL 274
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
K +Y+GK+L DD+ E+ + E I+ M+S+ K
Sbjct: 42 KFVYSGKVLQDDKTFDEFKVKEGDSIIFMISQKK 75
>gi|302767446|ref|XP_002967143.1| hypothetical protein SELMODRAFT_439993 [Selaginella
moellendorffii]
gi|300165134|gb|EFJ31742.1| hypothetical protein SELMODRAFT_439993 [Selaginella
moellendorffii]
Length = 866
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
V LKE++Q G A+ Q+LI G++L DDQ LS YN+ E + ++++P+P
Sbjct: 46 VPALKEQLQELVG--IPAQDQRLICRGRVLKDDQLLSAYNV-EDGHTLHLVARPQP 98
>gi|238589965|ref|XP_002392173.1| hypothetical protein MPER_08288 [Moniliophthora perniciosa FA553]
gi|215457864|gb|EEB93103.1| hypothetical protein MPER_08288 [Moniliophthora perniciosa FA553]
Length = 177
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 9 SDITQNQWQQ-----TVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
+D T+ +W+ T+ L + V L+++I GS A +L YAGK+L++
Sbjct: 97 NDPTKPEWKLDGKIVTIPDLPLHLLVSTLRDRILQHTGSSCPASRIRLSYAGKMLTNKST 156
Query: 64 LSEYNIDESKFIVVMLSKPK 83
++ YN+++ + +V L K
Sbjct: 157 IASYNLEDEELLVFSLDAKK 176
>gi|167381657|ref|XP_001735805.1| ubiquilin [Entamoeba dispar SAW760]
gi|165902063|gb|EDR27985.1| ubiquilin, putative [Entamoeba dispar SAW760]
Length = 312
Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +KEKI++++ + E+ +LI+AG++L DD+ LS + + + ++ S+ PT AP
Sbjct: 28 VTGIKEKIRNQQPD--VGEF-RLIFAGRVLKDDEVLSTLGVSNNVTLHLVRSR-SPTSAP 83
Query: 89 Y--SGPSDPTQPAGQESE 104
+ S PTQP Q +E
Sbjct: 84 SQPTPSSQPTQPTPQPNE 101
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS
6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS
6284]
Length = 404
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
LD ++ K +I SEK + + KLIY+GKIL +D + + ++ I+ M+SK
Sbjct: 18 LDADSTIESAKGQIASEKNCDI--DQIKLIYSGKILKNDATILNSGLKDNDHIIFMISKK 75
Query: 83 KPTPAPYS 90
K P S
Sbjct: 76 KKKTEPAS 83
Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDR 195
+R VV NPE LP +L+ + P L E I N E FV ML E V GD
Sbjct: 255 LRQVVSGNPEALPPLLENLTTRYPQLREQIMANPEVFVSMLLEAV-GDN 302
>gi|408399439|gb|EKJ78541.1| hypothetical protein FPSE_01265 [Fusarium pseudograminearum
CS3096]
Length = 439
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
T ++ QT++ + V LK K+ E E Q+LIY+G+++ +D ALS Y I
Sbjct: 19 TSSEGHQTIT-MSETATVLDLKTKLAGEDFENIPVERQRLIYSGRVMKNDDALSTYKIKN 77
Query: 72 SKFIVVMLS 80
+ I ++ S
Sbjct: 78 NNTIHMVKS 86
>gi|326530157|dbj|BAK08358.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 759
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
LK+KI + G L+E Q+LI G++L DD+ LS Y++++ + +++ +P
Sbjct: 115 LKDKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRQP 163
>gi|383807048|ref|ZP_09962609.1| hypothetical protein IMCC13023_05710 [Candidatus Aquiluna sp.
IMCC13023]
gi|383299478|gb|EIC92092.1| hypothetical protein IMCC13023_05710 [Candidatus Aquiluna sp.
IMCC13023]
Length = 244
Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +K KIQ ++G + Q LI+AGK L D + LS+YNI + + ++L K
Sbjct: 21 DSVDNVKAKIQDKEGIA--PDQQSLIFAGKALEDGRTLSDYNIQKESTLHLVL-KISSVA 77
Query: 87 APYSGP-------SDPTQPAG 100
PY GP S P AG
Sbjct: 78 RPYVGPRSLSVSKSAPANGAG 98
>gi|403412358|emb|CCL99058.1| predicted protein [Fibroporia radiculosa]
Length = 389
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V LK+ I +EK S+ A+ Q+LIY+G++L D+ LS Y I S I ++
Sbjct: 24 ISTDKSVLDLKQAI-AEK-SDVAADRQRLIYSGRVLKDEDVLSTYKIQSSHTIHMVKGAA 81
Query: 83 KPTPAPYSGPSD---PTQPAGQESEATRPATATSDSMLKVFFERVNPY---GGESEDP-- 134
+ + + P AGQ P T + M +NP+ G + DP
Sbjct: 82 RNAASSSAPAPPQPLPNMQAGQNPH--DPLTQLNGHMGYGQMAGLNPFADLGLNTNDPNM 139
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAF 183
+ + PQF Q + + NP L L QI SNP L ++ ++ F
Sbjct: 140 MQAMFNSPQFFQQISSIFSNPAL----LDQIIASNPQLAQMGPQVRQVF 184
>gi|351713140|gb|EHB16059.1| Large proline-rich protein BAT3 [Heterocephalus glaber]
Length = 1131
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I S +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIASSV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|158295082|ref|XP_001688762.1| AGAP005963-PA [Anopheles gambiae str. PEST]
gi|157015865|gb|EDO63768.1| AGAP005963-PA [Anopheles gambiae str. PEST]
Length = 1364
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + V+Q KE+I ++K S + E Q+LIY G++LSDD L Y+++ +V ++ +P
Sbjct: 18 VDEEISVRQFKEQI-ADKISVSV-ELQRLIYCGRVLSDDVPLKNYDLNGK--VVHLVQRP 73
Query: 83 KPT 85
P+
Sbjct: 74 PPS 76
>gi|37589366|gb|AAH59307.1| Bat2-a protein [Xenopus laevis]
Length = 831
Score = 40.8 bits (94), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
M A++ ++T V+ E VK K I S+ G E Q+LIY G++L +
Sbjct: 1 MAANEKMEVTVKTLDSQTRTFTVETEISVKDFKAHISSDVGIS--PEKQRLIYQGRVLQE 58
Query: 61 DQALSEYNIDESKFIVVMLSKPK 83
D+ L EYN+D +V + P+
Sbjct: 59 DKKLKEYNVDGKVIHLVERAPPQ 81
>gi|158295084|ref|XP_316003.3| AGAP005963-PB [Anopheles gambiae str. PEST]
gi|157015866|gb|EAA44118.3| AGAP005963-PB [Anopheles gambiae str. PEST]
Length = 1325
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + V+Q KE+I ++K S + E Q+LIY G++LSDD L Y+++ +V ++ +P
Sbjct: 18 VDEEISVRQFKEQI-ADKISVSV-ELQRLIYCGRVLSDDVPLKNYDLNGK--VVHLVQRP 73
Query: 83 KPT 85
P+
Sbjct: 74 PPS 76
>gi|424513111|emb|CCO66695.1| predicted protein [Bathycoccus prasinos]
Length = 533
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ + + + +LK + + GSE E +LIY G +L D++ + E +I E + ++
Sbjct: 29 MKNIKLTKLIAELKADLATTLGSEK--ESIRLIYKGHVLKDEKTIRECSIGEGHAVHLVQ 86
Query: 80 SKPKPTPAPYSGPSDPTQPAGQ 101
S PK +P+ SG S PA
Sbjct: 87 SAPKKSPSLTSGGSSGRPPASH 108
>gi|357612144|gb|EHJ67835.1| hypothetical protein KGM_02551 [Danaus plexippus]
Length = 1163
Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + V QLKEK+Q + G E Q+LI+ G++L+D++ L++Y++ +V + P
Sbjct: 18 VDDEITVAQLKEKVQEQMGIEI--GLQRLIFCGRVLADEKKLADYDVHGKVIHMVQRAPP 75
>gi|221122833|ref|XP_002155023.1| PREDICTED: polyubiquitin-C, partial [Hydra magnipapillata]
Length = 530
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+++ + ++ +K +IQ +KG +L + Q+LI+AGK L DD+ LS YN+
Sbjct: 316 VELADTIENVKARIQDKKG--FLPDQQRLIFAGKELEDDRTLSYYNV 360
Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
++ +K KIQ ++G +L + Q+LI+AGK L DD+ LS YN+
Sbjct: 171 IENVKAKIQDKEG--FLPDQQRLIFAGKELEDDRTLSYYNV 209
>gi|397570792|gb|EJK47464.1| hypothetical protein THAOC_33808, partial [Thalassiosira oceanica]
Length = 223
Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 18 QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
+T+S H ++ + +K KIQ +G + Q+LI+AGK L D +ALS+YNI +
Sbjct: 66 KTISLHCCPEDTIDVIKSKIQEVEGKP--TDEQRLIFAGKQLEDGRALSDYNIQHESTLH 123
Query: 77 VMLSKPKPTPAPYSGPSDPTQPAGQE 102
++L P SG + T GQE
Sbjct: 124 LVLRLRAGMYHPSSG-RNGTDEVGQE 148
>gi|9631009|ref|NP_047679.1| viral ubiquitin [Lymantria dispar MNPV]
gi|3822277|gb|AAC70228.1| viral ubiquitin [Lymantria dispar MNPV]
Length = 150
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ + V+ LKEKI ++G A+ Q+LIYAGK L D++ L++YNI + + ++L
Sbjct: 17 VEATDSVQTLKEKILDKEG--IPADQQRLIYAGKQLDDERTLNDYNIQKEATLHLVL 71
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLS-----KPKPTPAPYSGPSDPTQPAGQESE 104
KLIY+GK+L D + +SE + + +V M+S K K T P + + T PAG+ S
Sbjct: 43 KLIYSGKVLQDSKTVSECGLKDGDQVVFMISQKKSTKTKVTEPPAAPETATTVPAGEPS- 101
Query: 105 ATRPATATSDSMLKVFFERVNP 126
T ATA++D+ E + P
Sbjct: 102 -TEQATASADAPTAPAAEELQP 122
Score = 36.2 bits (82), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
+R VV NPE L +L+ I P L E I N E FV ML E V GD
Sbjct: 264 LRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV-GD 310
>gi|392595929|gb|EIW85252.1| hypothetical protein CONPUDRAFT_117951 [Coniophora puteana
RWD-64-598 SS2]
Length = 774
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 9 SDITQNQWQ-----QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
SD ++ +W+ TVS L + V L+E+I GS+ +L YAGK+L++
Sbjct: 694 SDPSKPEWKLDGKVVTVSDLPLNLLVSTLRERITQASGSQMPVSRIRLSYAGKMLTNSST 753
Query: 64 LSEYNIDESKFIVVMLS 80
++ YN+++ +V+ L+
Sbjct: 754 IANYNLEDDDQLVLSLT 770
>gi|359484732|ref|XP_002265813.2| PREDICTED: uncharacterized protein LOC100260199 [Vitis vinifera]
Length = 652
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 1 MGMLAHD-ISDITQNQWQQTVSHLDVQE---------EVKQLKEKIQSEKGSEYLAEYQK 50
MG A D ++ +N+ + + LD Q V LK++I + G L++ Q+
Sbjct: 1 MGCTAEDPMAGGKENEIEIKIKTLDSQTYTMRVNKQVPVPDLKQQIATVTG--VLSDQQR 58
Query: 51 LIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
LI GK+L DDQ L Y++++ + ++ +P P
Sbjct: 59 LICRGKVLKDDQRLCAYHVEDGHTLHLVTRQPVP 92
>gi|296084562|emb|CBI25583.3| unnamed protein product [Vitis vinifera]
Length = 679
Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 1 MGMLAHD-ISDITQNQWQQTVSHLDVQE---------EVKQLKEKIQSEKGSEYLAEYQK 50
MG A D ++ +N+ + + LD Q V LK++I + G L++ Q+
Sbjct: 1 MGCTAEDPMAGGKENEIEIKIKTLDSQTYTMRVNKQVPVPDLKQQIATVTG--VLSDQQR 58
Query: 51 LIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
LI GK+L DDQ L Y++++ + ++ +P P
Sbjct: 59 LICRGKVLKDDQRLCAYHVEDGHTLHLVTRQPVP 92
>gi|147904072|ref|NP_001080008.1| large proline-rich protein bag6-A [Xenopus laevis]
gi|82121109|sp|Q9YHD3.1|BAG6A_XENLA RecName: Full=Large proline-rich protein bag6-A; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3-A; AltName:
Full=Protein Scythe
gi|3983139|gb|AAC83822.1| Scythe [Xenopus laevis]
Length = 1135
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++ + VK K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 23 VETEISVKDFKAHISSDVG--ISPEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 80
Query: 83 K 83
+
Sbjct: 81 Q 81
>gi|342890269|gb|EGU89117.1| hypothetical protein FOXB_00390 [Fusarium oxysporum Fo5176]
Length = 447
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 19/162 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS-----KPK 83
V LK K+ E E Q+LIY+G+++ +D ALS Y I + I ++ S +P
Sbjct: 35 VLDLKTKLAGEDFENIPVERQRLIYSGRVMKNDDALSTYKIKHNNTIHMVKSAASNQQPN 94
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF------FERVNPYGGES----ED 133
TP + S P A +P + + F + P GG E
Sbjct: 95 QTPTANTSTSTPAPTNMASGTANQPFANLTGARYAGFGNGLPGLDMFGPDGGMGAPMDEA 154
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
+ L + P QQ NP+ + ++ SNP L L
Sbjct: 155 RIQRLMSDPNVQQSMNEALNNPDFINMLI----DSNPMLRNL 192
>gi|336274218|ref|XP_003351863.1| hypothetical protein SMAC_00410 [Sordaria macrospora k-hell]
gi|380096145|emb|CCC06192.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 437
Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 70/177 (39%), Gaps = 21/177 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V QLK + E+ E Q+LIY+GK++ DD+ LS Y I + ++ A
Sbjct: 35 VLQLKTLLAGEEYENIAPEQQRLIYSGKVMKDDELLSTYKIKHMNTVHMVKRPASAATAS 94
Query: 89 YSGPSDPTQPA-GQESEATRPATATSDSMLKVFF---------ERVNPYGG----ESEDP 134
S P QPA Q A P+ + F + P GG SED
Sbjct: 95 SGSASTPAQPAIPQNMAAGTPSNNLLAGLTGARFAGQVPLPSRDLFGPDGGMGAPPSEDE 154
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+A + + P Q N P V+ Q+ SNP L + + +LN P+
Sbjct: 155 MADMLSNPMMAQAMAEAFNN----PAVIDQMIASNPMLANMPADRAR---ELLNSPM 204
>gi|355671900|gb|AER94947.1| HLA-B associated transcript 3 [Mustela putorius furo]
Length = 715
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 39 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 96
Query: 83 K 83
+
Sbjct: 97 Q 97
>gi|328785653|ref|XP_003250630.1| PREDICTED: hypothetical protein LOC408889 [Apis mellifera]
Length = 1240
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKG-SEYLAEY-------QKLIYAGKILSDDQALSEYNID 70
TV LD Q L++ + +G EY+AE Q+LIY G++L D++ L++Y+++
Sbjct: 5 TVKTLDSQNHAFSLEDDQITVRGFKEYIAETVAVPADSQRLIYCGRVLQDEKKLNDYDVN 64
Query: 71 ESKFIVVMLSKPKP 84
+V + P+P
Sbjct: 65 GKVIHLVQRAPPQP 78
>gi|217071960|gb|ACJ84340.1| unknown [Medicago truncatula]
Length = 110
Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 11 SHFEIRVHPSDSIMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFL 70
Query: 76 VVMLSKPK 83
VVMLSK K
Sbjct: 71 VVMLSKSK 78
>gi|380020070|ref|XP_003693920.1| PREDICTED: uncharacterized protein LOC100869149 [Apis florea]
Length = 1243
Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKG-SEYLAEY-------QKLIYAGKILSDDQALSEYNID 70
TV LD Q L++ + +G EY+AE Q+LIY G++L D++ L++Y+++
Sbjct: 5 TVKTLDSQNHAFSLEDDQITVRGFKEYIAETVAVPADSQRLIYCGRVLQDEKKLNDYDVN 64
Query: 71 ESKFIVVMLSKPKP 84
+V + P+P
Sbjct: 65 GKVIHLVQRAPPQP 78
>gi|179347|gb|AAA35587.1| HLA-B-associated transcript 3 (BAT3) [Homo sapiens]
gi|179351|gb|AAA35588.1| HLA-B-associated transcript 3 (BAT3) [Homo sapiens]
Length = 1132
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I++ +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIRASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|392577784|gb|EIW70913.1| hypothetical protein TREMEDRAFT_73600 [Tremella mesenterica DSM
1558]
Length = 785
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78
T+S L V V L+E+I+ +E KL Y GK L++ L+ +N+DE +V+
Sbjct: 722 TISDLSVSTLVSTLRERIKRTVDAELPISRLKLDYGGKTLNNASTLASFNLDEGDLVVMS 781
Query: 79 LSK 81
+ K
Sbjct: 782 VRK 784
>gi|350295492|gb|EGZ76469.1| hypothetical protein NEUTE2DRAFT_146308 [Neurospora tetrasperma
FGSC 2509]
Length = 431
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP-KPTPA 87
V QLK + E+ E Q+LIY+GK++ DD+ LS Y I V M+ +P A
Sbjct: 35 VLQLKTLLAGEEYENISPEQQRLIYSGKVMKDDEVLSFYKIKHMN-TVHMVKRPASAATA 93
Query: 88 PYSGPSDPTQPA-GQESEATRPATATSDSMLKVFF---------ERVNPYGG----ESED 133
S P QPA Q A P+ + F + P GG SED
Sbjct: 94 SSGSTSTPAQPAIPQNMAAGTPSNNLLAGLTGARFAGQVPLPSRDLFGPDGGMGAPPSED 153
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+A + + P Q+ N P V+ Q+ SNP L + + +LN P+
Sbjct: 154 EIANMLSNPAMAQVMAEAFNN----PAVIDQMIASNPMLANMPADRAR---ELLNSPM 204
>gi|417405693|gb|JAA49550.1| Putative ubiquitin-like protein regulator of apoptosis [Desmodus
rotundus]
Length = 1049
Score = 40.4 bits (93), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY 127
T P SG S T A + + P T V N Y
Sbjct: 90 PQTQLP-SGASSGTGSA-SATHSGGPTLGTRGPGASVHDRNANSY 132
>gi|409052062|gb|EKM61538.1| hypothetical protein PHACADRAFT_190708 [Phanerochaete carnosa
HHB-10118-sp]
Length = 367
Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + V LK+ I + S+ A+ Q+LIY+G++L D+ L+ Y I S I ++
Sbjct: 27 ISTDKTVLDLKQAIADK--SDVPADRQRLIYSGRVLKDEDQLTVYKIQSSHTIHMVKGVS 84
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESE-DPLAFLRTQ 141
+ P +Q A Q + +D + ++ R +G + +P +
Sbjct: 85 R-------SPGQTSQAAPQPLPTMQTGQNPNDPLTQLNGHRA--FGAMAGFNPFPQMGLN 135
Query: 142 PQFQQMRTVVQQNPELL---------PTVLQQIGQSNPALLELISHNQEAF 183
P M + QNPE L P VL+Q+ +NP L + +E F
Sbjct: 136 PNDPNMMQGMLQNPEFLNQMSTIMSDPAVLEQVIAANPQLAAMAPRMREMF 186
>gi|148694702|gb|EDL26649.1| HLA-B-associated transcript 3, isoform CRA_g [Mus musculus]
Length = 736
Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|449703537|gb|EMD43972.1| ubiquitin family protein [Entamoeba histolytica KU27]
Length = 357
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 9/81 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +KEKI +++ + E+ +LI+AG++L DD+ LS I+ + + ++ S+ +P
Sbjct: 28 VSGIKEKIHNQQPD--VGEF-RLIFAGRVLKDDEVLSTLGINNNVTLHLVRSR-----SP 79
Query: 89 YSGPSDPTQPAGQESEATRPA 109
S PS PT P Q + ++P
Sbjct: 80 TSVPSQPT-PNSQPTPNSQPT 99
>gi|164427534|ref|XP_965414.2| hypothetical protein NCU03028 [Neurospora crassa OR74A]
gi|38566966|emb|CAE76267.1| related to ubiquitin-like protein DSK2 [Neurospora crassa]
gi|157071783|gb|EAA36178.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 431
Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP-KPTPA 87
V QLK + E+ E Q+LIY+GK++ DD+ LS Y I V M+ +P A
Sbjct: 35 VLQLKTLLAGEEYENISPEQQRLIYSGKVMKDDEVLSFYKIKHMN-TVHMVKRPASAATA 93
Query: 88 PYSGPSDPTQPA-GQESEATRPATATSDSMLKVFF---------ERVNPYGG----ESED 133
S P QPA Q A P+ + F + P GG SED
Sbjct: 94 SSGSTSTPAQPAIPQNMAAGTPSNNLLAGLTGARFAGQVPLPSRDLFGPDGGMGAPPSED 153
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+A + + P Q+ N P V+ Q+ SNP L + + +LN P+
Sbjct: 154 EIANMLSNPAMAQVMAEAFNN----PAVIDQMIASNPMLANMPADRAR---ELLNSPM 204
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ +K+K+ + G + QKLIY+GKIL D+ + I+E F+V M+S
Sbjct: 23 ISTVKQKLSEDHG--WDPALQKLIYSGKILKDEDTIESCKIEEKGFVVCMVS 72
>gi|74206669|dbj|BAE41587.1| unnamed protein product [Mus musculus]
Length = 1108
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPAT 110
T P S + A P T
Sbjct: 90 PQTQLPSGASSGTGSASATHGGAPLPGT 117
>gi|148225554|ref|NP_001081145.1| homocysteine-inducible, endoplasmic reticulum stress-inducible,
ubiquitin-like domain member 1 [Xenopus laevis]
gi|28279449|gb|AAH46268.1| Herpud1-A-prov protein [Xenopus laevis]
Length = 364
Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 11/106 (10%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSE-YNIDESKFIVVMLSKPKPTPA 87
V++LK +++ E E + + Q+LIYAGK+L D L+E ++D + ++ SK P
Sbjct: 30 VRELKTQLRRELPDEPMEQDQRLIYAGKLLPDHLKLNEVLSMDSRHVLHLVCSKRIPV-- 87
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESED 133
Q + Q S T T + V +R+ P +ED
Sbjct: 88 --------NQDSSQHSGCTSARPHTVNPEADVIRQRIPPQNNTAED 125
>gi|403374171|gb|EJY87023.1| Ubiquitin family protein, putative [Oxytricha trifallax]
Length = 287
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPA 109
+LIY GKIL D ++S+YNI + FI + T AP S+ + +S A P
Sbjct: 71 RLIYQGKILQDQDSVSQYNIKDGAFIHAFI-----TQAPVQQLSETQGDSNNQSLANDPE 125
Query: 110 TATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQ 163
++ F+R+ SE + +R Q MR+ +++ E ++L+
Sbjct: 126 E-------RLGFDRLLANNAYSEIEVHAIRLQFHSIMMRSGIEKTNETSESLLE 172
>gi|402866464|ref|XP_003897402.1| PREDICTED: large proline-rich protein BAG6 isoform 4 [Papio anubis]
Length = 1077
Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA-----GQESEATR-PATATSD 114
T P SG S T A G S TR P + D
Sbjct: 90 PQTQLP-SGASSGTGSASATHGGGPSPGTRGPGASVHD 126
>gi|398399050|ref|XP_003852982.1| hypothetical protein MYCGRDRAFT_71110 [Zymoseptoria tritici IPO323]
gi|339472864|gb|EGP87958.1| hypothetical protein MYCGRDRAFT_71110 [Zymoseptoria tritici IPO323]
Length = 304
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 18/164 (10%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML---SKPKPT 85
V LK+K+ + + ++ E Q+LIY+G++L D + I + + ++ S +
Sbjct: 39 VGDLKQKLSTSEYADLPPERQRLIYSGRVLKDADTVGSCKIKDGNTVHLVKGAESNQRQN 98
Query: 86 PAPYSG----PSDPTQPAGQESEATRPATATSDSMLKVFFERVNPY----GGESEDPLAF 137
PA G PS P QPA + T + + ++ R + G ++
Sbjct: 99 PANQGGAAAIPSAPGQPASNVPTNIAAGSGTGNPLAQLTGARYAGFHGLPGADTFGADGG 158
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQS--NPALLELISHN 179
+ P QM ++ P QQ+ ++ NPA+L+++ +N
Sbjct: 159 MGAPPNPDQMLRMLDD-----PNFAQQMNEAMNNPAVLDMLRNN 197
>gi|357197139|ref|NP_001239398.1| large proline-rich protein BAG6 isoform 3 [Mus musculus]
Length = 1122
Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|357610612|gb|EHJ67063.1| ubiquilin 1,2 [Danaus plexippus]
Length = 512
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 50/186 (26%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
++K+LKE + + +E E LI+AGKI++D + ++NI + + +++ P P P
Sbjct: 31 DIKKLKEVLSPKFNAE--PEQLCLIFAGKIMNDSDTMKQHNIKDGLTVHLVIKTP-PRPE 87
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT----QPQ 143
P G P G P+G S LA L + Q
Sbjct: 88 PEGGTRRPPADIG-----------------------ATPFGLNSLGGLAGLESLGLGQST 124
Query: 144 FQQMRTVVQQ----NPELLPTVL-----QQIGQ----------SNPALLELISHNQEAFV 184
F ++ +QQ NP++L VL QQ+ SNP + +L++ N E
Sbjct: 125 FMDLQARMQQELLSNPDMLRQVLDNPLVQQMMNDPENMRTLITSNPQMQDLMARNPE-IS 183
Query: 185 RMLNEP 190
MLN P
Sbjct: 184 HMLNNP 189
>gi|148694697|gb|EDL26644.1| HLA-B-associated transcript 3, isoform CRA_b [Mus musculus]
Length = 709
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|355561529|gb|EHH18161.1| hypothetical protein EGK_14711 [Macaca mulatta]
gi|355748431|gb|EHH52914.1| hypothetical protein EGM_13449 [Macaca fascicularis]
Length = 1162
Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA-----GQESEATR-PATATSD 114
T P SG S T A G S TR P + D
Sbjct: 90 PQTQLP-SGASSGTGSASATHGGGPSPGTRGPGASVHD 126
>gi|322694647|gb|EFY86471.1| deubiquitination-protection protein dph1 [Metarhizium acridum CQMa
102]
Length = 441
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 22/110 (20%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +LK K+ + E Q+LIY+G+++ +D+ L YNI ++ I ++
Sbjct: 35 VLELKTKLAGQDFEHIPVERQRLIYSGRVMKNDETLGSYNIKQNNTIHMV---------- 84
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFL 138
S S+PTQ T+TS + E ++ G DPLA L
Sbjct: 85 KSAASNPTQ-----------QTSTSGPTPRAVPENIS-AGTNPNDPLAGL 122
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
L L+ P FQ +++NP LL ++QQ+ QSNPA+ + ++ N E ++L
Sbjct: 303 LESLQNSPMFQNTLGAIRENPALLQPLIQQLAQSNPAIAQQLTSNPELLYQIL 355
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 16 WQQTVSH---------LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQ-ALS 65
W+ +H +D Q+ + L+EK+ +E+ A KL+YAG+ L+DDQ +
Sbjct: 504 WKLKCTHPPYTTPEVDIDPQDTILNLREKVGIL--AEHRANILKLLYAGRTLADDQKTIE 561
Query: 66 EYNIDESKFIVVML 79
N+ E+ +I + L
Sbjct: 562 SLNLKENHWIFIQL 575
>gi|402866458|ref|XP_003897399.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Papio anubis]
gi|402866460|ref|XP_003897400.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Papio anubis]
gi|402866462|ref|XP_003897401.1| PREDICTED: large proline-rich protein BAG6 isoform 3 [Papio anubis]
gi|380786817|gb|AFE65284.1| large proline-rich protein BAG6 isoform b [Macaca mulatta]
gi|380816478|gb|AFE80113.1| large proline-rich protein BAG6 isoform b [Macaca mulatta]
gi|380816480|gb|AFE80114.1| large proline-rich protein BAG6 isoform b [Macaca mulatta]
Length = 1126
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA-----GQESEATR-PATATSD 114
T P SG S T A G S TR P + D
Sbjct: 90 PQTQLP-SGASSGTGSASATHGGGPSPGTRGPGASVHD 126
>gi|384940134|gb|AFI33672.1| large proline-rich protein BAG6 isoform b [Macaca mulatta]
gi|384949404|gb|AFI38307.1| large proline-rich protein BAG6 isoform b [Macaca mulatta]
gi|384949406|gb|AFI38308.1| large proline-rich protein BAG6 isoform b [Macaca mulatta]
Length = 1126
Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA-----GQESEATR-PATATSD 114
T P SG S T A G S TR P + D
Sbjct: 90 PQTQLP-SGASSGTGSASATHGGGPSPGTRGPGASVHD 126
>gi|148694699|gb|EDL26646.1| HLA-B-associated transcript 3, isoform CRA_d [Mus musculus]
Length = 1050
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|148694704|gb|EDL26651.1| HLA-B-associated transcript 3, isoform CRA_i [Mus musculus]
Length = 1105
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPAT 110
T P S + A P T
Sbjct: 90 PQTQLPSGASSGTGSASATHGGAPLPGT 117
>gi|357197137|ref|NP_001239397.1| large proline-rich protein BAG6 isoform 2 [Mus musculus]
gi|74221893|dbj|BAE28666.1| unnamed protein product [Mus musculus]
Length = 1136
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|84997830|ref|XP_953636.1| ubiquitin-related chaperonin [Theileria annulata]
gi|65304633|emb|CAI72958.1| ubiquitin-related chaperonin, putative [Theileria annulata]
Length = 319
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 33/188 (17%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LDV+ E V QLKEK + + A+ Q+LI+ G+I+ D++ LS N+++ I ++ S
Sbjct: 17 LDVEPEMTVLQLKEKCSDKANAP--ADKQRLIFKGRIIKDEEVLSALNVEDGNTIHLVRS 74
Query: 81 KPKPTPAPYSGPSDP---------------TQPAGQESEATRPATATSDSMLKVFFERVN 125
KP +P + QP GQ + D M ++F +
Sbjct: 75 GLKPASSPPTTTPTATTTTAQNTTTPTTGENQPFGQVPGFNQ------DFMSQMFQGGMG 128
Query: 126 PYGGESE-DP--LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEA 182
G E +P A L P Q+M T + NPEL T++ +S+P L ++ N
Sbjct: 129 NLPGMPELNPQSAAALLNSPVVQEMLTQISSNPELFRTLV----ESSPFLQPMMQQN-PM 183
Query: 183 FVRMLNEP 190
F +MLN P
Sbjct: 184 FGQMLNNP 191
>gi|291395766|ref|XP_002714316.1| PREDICTED: HLA-B associated transcript-3 [Oryctolagus cuniculus]
Length = 1126
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMSVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|292397713|ref|YP_003517779.1| ubiquitin [Lymantria xylina MNPV]
gi|291065430|gb|ADD73748.1| ubiquitin [Lymantria xylina MNPV]
Length = 151
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI--DESKFIVVMLS 80
++ + V+ LKEKI ++G A+ Q+LIYAGK L D++ L++YNI + + +V+ L
Sbjct: 17 VEATDSVQTLKEKILDKEGIP--ADQQRLIYAGKQLDDERTLNDYNIQKEATLHLVLRLR 74
Query: 81 KPKPTPAPYSGPSD 94
+ T +G D
Sbjct: 75 GGRRTHELAAGRPD 88
>gi|148694700|gb|EDL26647.1| HLA-B-associated transcript 3, isoform CRA_e [Mus musculus]
Length = 1147
Score = 40.0 bits (92), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|346325852|gb|EGX95448.1| ubiquitin-like protein DskB, putative [Cordyceps militaris CM01]
Length = 437
Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V LK K+ + + E Q+LIY+G+++ +D AL+ Y I + I ++ S P
Sbjct: 35 VIDLKTKLAGDDFEKIPVERQRLIYSGRVMKNDDALAVYKIKPNNIIHMVKSAASNQSQP 94
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFF----------ERVNPYGGES----EDP 134
S S PT A + A+ A S+ + + P GG E+
Sbjct: 95 ASSTSVPTPQALPTNMASGTANNPLASLTSARYAGHQLNLPGMDAFGPDGGMGPPMDEER 154
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
+A L + P QQ NP+ + ++ SNP L +
Sbjct: 155 MARLMSDPNVQQSMNEALSNPDFVNMLI----DSNPMLRNM 191
>gi|148694703|gb|EDL26650.1| HLA-B-associated transcript 3, isoform CRA_h [Mus musculus]
Length = 1046
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|147832422|emb|CAN59674.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 737
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|27371140|gb|AAH37051.1| Bat3 protein, partial [Mus musculus]
Length = 522
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPAT 110
T P S + A P T
Sbjct: 90 PQTQLPSGASSGTGSASATHGGAPLPGT 117
>gi|33147082|ref|NP_476512.1| large proline-rich protein BAG6 isoform 1 [Mus musculus]
gi|76364091|sp|Q9Z1R2.1|BAG6_MOUSE RecName: Full=Large proline-rich protein BAG6; AltName: Full=BAG
family molecular chaperone regulator 6; AltName:
Full=BCL2-associated athanogene 6; Short=BAG-6;
Short=BAG6; AltName: Full=HLA-B-associated transcript
3; AltName: Full=Protein Scythe
gi|3941736|gb|AAC82479.1| BAT3 [Mus musculus]
gi|148694695|gb|EDL26642.1| HLA-B-associated transcript 3, isoform CRA_a [Mus musculus]
gi|148694696|gb|EDL26643.1| HLA-B-associated transcript 3, isoform CRA_a [Mus musculus]
Length = 1154
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|298708695|emb|CBJ49192.1| Ubiquitin family protein, expressed [Ectocarpus siliculosus]
Length = 564
Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 20 VSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQ-ALSEYNIDESKFIVVM 78
+ +D + V K+KI + G E Q+LIY G+++ +DQ L+ Y ++ + ++
Sbjct: 17 TTEVDTEATVLAFKQKISEKAG--VAPELQRLIYKGRVMKEDQDTLASYTVEADSTVHLV 74
Query: 79 LSKPKPTPA-PYSGPSDPTQPA 99
S+ + P+ P +G + T P+
Sbjct: 75 RSQARAAPSMPAAGGAAGTNPS 96
>gi|410958738|ref|XP_003985971.1| PREDICTED: large proline-rich protein BAG6 isoform 3 [Felis catus]
Length = 1168
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 123 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 180
Query: 83 K 83
+
Sbjct: 181 Q 181
>gi|194380314|dbj|BAG63924.1| unnamed protein product [Homo sapiens]
Length = 903
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|314122233|ref|NP_001186627.1| large proline-rich protein BAG6 isoform d [Homo sapiens]
Length = 1077
Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|314122231|ref|NP_001186626.1| large proline-rich protein BAG6 isoform c [Homo sapiens]
Length = 903
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|119623863|gb|EAX03458.1| HLA-B associated transcript 3, isoform CRA_c [Homo sapiens]
Length = 1162
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|161621275|ref|NP_001068834.2| large proline-rich protein BAG6 [Bos taurus]
gi|296474241|tpg|DAA16356.1| TPA: HLA-B associated transcript-3 [Bos taurus]
Length = 1128
Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|119623864|gb|EAX03459.1| HLA-B associated transcript 3, isoform CRA_d [Homo sapiens]
Length = 1229
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 136 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 193
Query: 83 K 83
+
Sbjct: 194 Q 194
>gi|4337109|gb|AAD18085.1| BAT3 [Homo sapiens]
Length = 1229
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 136 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 193
Query: 83 K 83
+
Sbjct: 194 Q 194
>gi|168046898|ref|XP_001775909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672741|gb|EDQ59274.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
LDV E V +K++I+ +G + Q LIY GK+L D+ + + + E++F VVML
Sbjct: 15 LDVTPLETVINVKKRIEDSQGEQLFPCAQQLLIYQGKVLKDETTMEDNKVLENEFFVVML 74
Query: 80 SKP 82
SK
Sbjct: 75 SKT 77
>gi|440898771|gb|ELR50196.1| Large proline-rich protein BAT3 [Bos grunniens mutus]
Length = 1164
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|426352419|ref|XP_004043710.1| PREDICTED: large proline-rich protein BAG6 isoform 4 [Gorilla
gorilla gorilla]
Length = 1077
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|15277262|dbj|BAB63390.1| BAT3 [Homo sapiens]
gi|119623858|gb|EAX03453.1| HLA-B associated transcript 3, isoform CRA_a [Homo sapiens]
gi|119623859|gb|EAX03454.1| HLA-B associated transcript 3, isoform CRA_a [Homo sapiens]
gi|119623861|gb|EAX03456.1| HLA-B associated transcript 3, isoform CRA_a [Homo sapiens]
gi|119623862|gb|EAX03457.1| HLA-B associated transcript 3, isoform CRA_a [Homo sapiens]
Length = 1126
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|417406014|gb|JAA49689.1| Putative ubiquitin-like protein regulator of apoptosis [Desmodus
rotundus]
Length = 1161
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|195040602|ref|XP_001991100.1| GH12490 [Drosophila grimshawi]
gi|193900858|gb|EDV99724.1| GH12490 [Drosophila grimshawi]
Length = 551
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 26/179 (14%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++V E+ KI + E AE LI+AGKI+ D L +NI ++ + +++ P
Sbjct: 22 VEVDEDSGIKDFKILVAQKFEAEAEQLVLIFAGKIMKDTDTLKMHNIKDNLTVHLVIKAP 81
Query: 83 KPT-PAPYSGPSDPTQP----------AGQESEATRPATATSDSMLKVFFERVNPYGGES 131
T AP P+D Q AG E+ T D ++ E +N +
Sbjct: 82 TRTNDAPARAPADVRQTPYGLNQFGGLAGMEALGAGSNTFM-DLQARMQNELLN-----N 135
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
D L L P QQM NPE ++Q+ SNP + +L+ N E MLN P
Sbjct: 136 GDMLRSLMDNPLVQQM----MNNPE----TMRQLITSNPQMQDLMQRNPE-ISHMLNNP 185
>gi|57997480|emb|CAI46045.1| hypothetical protein [Homo sapiens]
Length = 1126
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|18375630|ref|NP_542433.1| large proline-rich protein BAG6 isoform b [Homo sapiens]
gi|18375632|ref|NP_542434.1| large proline-rich protein BAG6 isoform b [Homo sapiens]
gi|149158696|ref|NP_001092004.1| large proline-rich protein BAG6 isoform b [Homo sapiens]
gi|13111925|gb|AAH03133.1| HLA-B associated transcript 3 [Homo sapiens]
gi|168277698|dbj|BAG10827.1| large proline-rich protein BAT3 [synthetic construct]
Length = 1126
Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|422295772|gb|EKU23071.1| ubiquilin [Nannochloropsis gaditana CCMP526]
Length = 321
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 35 KIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT-------PA 87
K+Q + ++ E Q+LIY G++L D + LS YN+ E+ + +++P P
Sbjct: 37 KVQVKDCTQIPEERQRLIYRGRVLQDGEHLSTYNV-EAGHTIHCVARPAGVPVSSSQPPV 95
Query: 88 PYSGPSDPTQPAG 100
P +G + T P G
Sbjct: 96 PRTGLATGTAPGG 108
>gi|410958734|ref|XP_003985969.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Felis catus]
Length = 1217
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 123 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 180
Query: 83 K 83
+
Sbjct: 181 Q 181
>gi|337298972|ref|NP_001229675.1| large proline-rich protein BAG6 [Ornithorhynchus anatinus]
gi|317374852|sp|A7X5R6.1|BAG6_ORNAN RecName: Full=Large proline-rich protein BAG6; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3
gi|156602034|gb|ABU86908.1| Bat3 [Ornithorhynchus anatinus]
Length = 1088
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VK+ KE I + + Q+LIY G++L DD+ L EYN+ K I ++ P T P
Sbjct: 46 VKEFKEHIAA--AVSIPPDKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAPPQTQGP 102
Query: 89 YSG 91
SG
Sbjct: 103 SSG 105
>gi|157115392|ref|XP_001652587.1| ubiquilin 1,2 [Aedes aegypti]
gi|108876959|gb|EAT41184.1| AAEL007160-PA [Aedes aegypti]
Length = 505
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 78/185 (42%), Gaps = 49/185 (26%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTP 86
E+K+L+ + + S+ + LI+AGKI+ D L +NI + + +V+ + PK P
Sbjct: 30 EIKELRATVAEQFESD--PDLVCLIFAGKIMKDTDTLKTHNIKDGLTVHLVIKAAPKSEP 87
Query: 87 -APYSGPSDPTQ-PAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQF 144
P P+D +Q P G +N GG S A Q F
Sbjct: 88 EGPRRAPADVSQTPFG-----------------------LNQLGGLSALG-ALGGNQTNF 123
Query: 145 QQMRTVVQQ----NPELLPTVL---------------QQIGQSNPALLELISHNQEAFVR 185
+++ +Q NPEL+ TVL +QI SNP + +L+ N E
Sbjct: 124 MDLQSRMQHELLGNPELMRTVLDNPLVQQMMNNPDTMRQIITSNPQMQDLMQRNPE-ISH 182
Query: 186 MLNEP 190
MLN P
Sbjct: 183 MLNNP 187
>gi|348576506|ref|XP_003474028.1| PREDICTED: large proline-rich protein BAG6-like isoform 2 [Cavia
porcellus]
Length = 1084
Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|119623860|gb|EAX03455.1| HLA-B associated transcript 3, isoform CRA_b [Homo sapiens]
Length = 1132
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|149158692|ref|NP_004630.3| large proline-rich protein BAG6 isoform a [Homo sapiens]
gi|76800648|sp|P46379.2|BAG6_HUMAN RecName: Full=Large proline-rich protein BAG6; AltName: Full=BAG
family molecular chaperone regulator 6; AltName:
Full=BCL2-associated athanogene 6; Short=BAG-6;
Short=BAG6; AltName: Full=HLA-B-associated transcript
3; AltName: Full=Protein G3; AltName: Full=Protein
Scythe
Length = 1132
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|426352413|ref|XP_004043707.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Gorilla
gorilla gorilla]
gi|426352415|ref|XP_004043708.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Gorilla
gorilla gorilla]
gi|426352417|ref|XP_004043709.1| PREDICTED: large proline-rich protein BAG6 isoform 3 [Gorilla
gorilla gorilla]
Length = 1126
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|327344117|gb|AEA50963.1| putative PDF1-interacting protein 1, partial [Gossypium barbadense]
Length = 550
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 46 AEYQKLIYAGKILSDDQALSEYNI--DESKFIVVML--SKPKPTPAPYSGPSDPTQPAGQ 101
A+ Q+LIY G++L DDQ L Y + D + +V S P PA + + P G
Sbjct: 57 ADQQRLIYKGRVLKDDQTLQSYGLQADHTVHMVRSFAPSSSIPPPAATTNTATPNSTPG- 115
Query: 102 ESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELL--- 158
TR + + L G + F P+F+Q++ + QNP ++
Sbjct: 116 ---VTRGVGSNEGAGLGASSFPGLNALGGNGGLGLFGSGLPEFEQVQQQLTQNPNMMSEL 172
Query: 159 ------------PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
P +++ + SNP + E+I N E +LN+P
Sbjct: 173 MNTPAIQSLMNNPELMRSLIASNPQMREIIDQNPE-LGHILNDP 215
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
PQ +R ++QNP LL L + Q +P L ++I N F+ ++NE
Sbjct: 236 PQLNNLRNAIRQNPTLLREFLTHVSQVSPELYQIIQSNPREFLEIINE 283
Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
+K LK+ + E +EY + KLIY GK L+D+Q++ NI +S V++++K K A
Sbjct: 23 IKVLKQSV--EDATEYSSNGMKLIYGGKELADEQSIESANI-QSNVAVIVVAKKKQLAA 78
>gi|426352421|ref|XP_004043711.1| PREDICTED: large proline-rich protein BAG6 isoform 5 [Gorilla
gorilla gorilla]
Length = 903
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|395831976|ref|XP_003789054.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Otolemur
garnettii]
gi|395831978|ref|XP_003789055.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Otolemur
garnettii]
Length = 1126
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|119623865|gb|EAX03460.1| HLA-B associated transcript 3, isoform CRA_e [Homo sapiens]
Length = 1140
Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|426250558|ref|XP_004019002.1| PREDICTED: large proline-rich protein BAG6 isoform 3 [Ovis aries]
Length = 1067
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|348576504|ref|XP_003474027.1| PREDICTED: large proline-rich protein BAG6-like isoform 1 [Cavia
porcellus]
Length = 1133
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|338718591|ref|XP_003363856.1| PREDICTED: large proline-rich protein BAG6 [Equus caballus]
Length = 1073
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|441594097|ref|XP_003272149.2| PREDICTED: LOW QUALITY PROTEIN: large proline-rich protein BAG6
[Nomascus leucogenys]
Length = 1126
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|397523198|ref|XP_003831628.1| PREDICTED: large proline-rich protein BAG6 isoform 3 [Pan
paniscus]
Length = 1077
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|147832417|emb|CAN59669.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 156
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA 99
T P SG S T A
Sbjct: 90 PQTQLP-SGASSGTGSA 105
>gi|426250554|ref|XP_004019000.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Ovis aries]
gi|426250556|ref|XP_004019001.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Ovis aries]
Length = 1116
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|162138209|gb|ABX82810.1| HLA-B-associated protein 3 [Sus scrofa]
Length = 1128
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|147832423|emb|CAN59675.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 1078
Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|223950621|ref|NP_001138854.1| large proline-rich protein BAG6 [Sus scrofa]
gi|317374853|sp|A5D9M6.1|BAG6_PIG RecName: Full=Large proline-rich protein BAG6; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3
gi|147832424|emb|CAN59676.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 1128
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|397523194|ref|XP_003831626.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Pan
paniscus]
gi|397523196|ref|XP_003831627.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Pan
paniscus]
Length = 1126
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|384494052|gb|EIE84543.1| hypothetical protein RO3G_09253 [Rhizopus delemar RA 99-880]
Length = 334
Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY-NIDESKFIVVMLSKPKPTPA 87
V QLK +IQ E Q+LI+ G++L DD+ L++Y N+D K + +++ +P A
Sbjct: 40 VLQLKHEIQIACDVE--CNRQRLIFQGRVLKDDKNLTDYANLDNGKVVHLVI---RPADA 94
Query: 88 PYS 90
P++
Sbjct: 95 PHN 97
>gi|147832418|emb|CAN59670.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 180
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P T
Sbjct: 36 QMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAPPQT 92
Query: 86 PAPYSGPSDPTQPA 99
P SG S T A
Sbjct: 93 QLP-SGASSGTGSA 105
>gi|110665578|gb|ABG81435.1| HLA-B associated transcript-3 [Bos taurus]
Length = 492
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|414584961|tpg|DAA35532.1| TPA: hypothetical protein ZEAMMB73_783009 [Zea mays]
Length = 107
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 32 LKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
LKEKI + G L+E Q+LI G++L DD+ LS Y++++ + +++ P
Sbjct: 45 LKEKIATVTG--ILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLVVRHP 93
>gi|344307168|ref|XP_003422254.1| PREDICTED: large proline-rich protein BAG6-like isoform 2
[Loxodonta africana]
Length = 1127
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|344307166|ref|XP_003422253.1| PREDICTED: large proline-rich protein BAG6-like isoform 1
[Loxodonta africana]
Length = 1141
Score = 39.7 bits (91), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|344307172|ref|XP_003422256.1| PREDICTED: large proline-rich protein BAG6-like isoform 4
[Loxodonta africana]
Length = 1078
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|344307170|ref|XP_003422255.1| PREDICTED: large proline-rich protein BAG6-like isoform 3
[Loxodonta africana]
Length = 905
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|194223335|ref|XP_001490615.2| PREDICTED: large proline-rich protein BAG6 isoform 2 [Equus
caballus]
Length = 1128
Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|338718593|ref|XP_003363857.1| PREDICTED: large proline-rich protein BAG6 [Equus caballus]
Length = 904
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|397523200|ref|XP_003831629.1| PREDICTED: large proline-rich protein BAG6 isoform 4 [Pan
paniscus]
Length = 903
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|297677690|ref|XP_002816774.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Pongo
abelii]
Length = 1126
Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|410958736|ref|XP_003985970.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Felis
catus]
Length = 1129
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 35 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 92
Query: 83 K 83
+
Sbjct: 93 Q 93
>gi|194223333|ref|XP_001490565.2| PREDICTED: large proline-rich protein BAG6 isoform 1 [Equus
caballus]
Length = 1122
Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|340375318|ref|XP_003386183.1| PREDICTED: polyubiquitin-like [Amphimedon queenslandica]
Length = 968
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ ++ +K KIQ ++G + Q+LI+AGK+L DD+ LS+YNI
Sbjct: 648 DTIENVKAKIQDKEGIP--PDQQRLIFAGKVLVDDRTLSDYNI 688
Score = 37.7 bits (86), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ ++ +K KIQ ++G + Q+LI+AGKIL D + LS+YNI + + ++L
Sbjct: 173 DTIENVKAKIQDKEGIP--PDQQRLIFAGKILEDGRTLSDYNIQKESTLHLVLC 224
>gi|301789305|ref|XP_002930074.1| PREDICTED: large proline-rich protein BAT3-like [Ailuropoda
melanoleuca]
Length = 1130
Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 35 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 92
Query: 83 K 83
+
Sbjct: 93 Q 93
>gi|395533870|ref|XP_003768973.1| PREDICTED: large proline-rich protein BAG6 [Sarcophilus harrisii]
Length = 1190
Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VK+ KE I + +E Q+LIY G++L D++ L EYN+ K I ++ P T P
Sbjct: 115 VKEFKEHIATSV--SIPSEKQRLIYQGRVLQDEKKLQEYNVG-GKVIHLVERAPPQTQPP 171
Query: 89 YSG 91
SG
Sbjct: 172 SSG 174
>gi|340379705|ref|XP_003388367.1| PREDICTED: ubiquilin-1-like [Amphimedon queenslandica]
Length = 587
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 54/196 (27%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E V +LKE ++ + G E E LI+AGKIL D++ L + + ++ V ++ +P
Sbjct: 28 ESVGKLKEMLKEKLGDENKGEL-CLIFAGKILKDEETLESHGLVKTGLTVHLVIRPG--- 83
Query: 87 APYSGPSDPTQPAGQES-EATRPATATSDSMLKVFFERVNPYGGESE-------DPLAFL 138
P GQ S +T +TA S++ GG S +P A
Sbjct: 84 ---KAQGSAATPVGQNSGTSTNSSTAPSEA----------GTGGGSGLPQAPPLNPFAMF 130
Query: 139 RT---------QPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLE 174
Q Q QQ+ NPE++ P LQ + SNP + +
Sbjct: 131 GGGGAGLPGDMQGQMQQLMA----NPEMMRQILESPMMQSFMSNPDALQSVLTSNPQMQQ 186
Query: 175 LISHNQEAFVRMLNEP 190
L+ N E +LN P
Sbjct: 187 LMERNPE-LSHILNNP 201
>gi|302924182|ref|XP_003053831.1| hypothetical protein NECHADRAFT_75374 [Nectria haematococca mpVI
77-13-4]
gi|256734772|gb|EEU48118.1| hypothetical protein NECHADRAFT_75374 [Nectria haematococca mpVI
77-13-4]
Length = 446
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
V LK K+ E E Q+LIY+G+++ +D ALS Y I + I ++ S
Sbjct: 35 VLDLKTKLAGEDLENIAVERQRLIYSGRVMKNDDALSTYKIKHNNTIHMVKS 86
>gi|123489574|ref|XP_001325419.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121908318|gb|EAY13196.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 405
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 7/65 (10%)
Query: 21 SHLDVQEE-----VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
++ D++ E + QLK+KI +E+ + A +LIY+GKIL+D +S YNI + +
Sbjct: 11 NNFDIEVEGPELTIAQLKQKIAAERNLD--ATKIRLIYSGKILADTNTISFYNIPDGHAV 68
Query: 76 VVMLS 80
+++S
Sbjct: 69 HMVVS 73
>gi|344302429|gb|EGW32703.1| hypothetical protein SPAPADRAFT_60059 [Spathaspora passalidarum
NRRL Y-27907]
Length = 368
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
D V +LK+ I +E S+ AE Q+LIY+GK+L D++ +S Y + + I ++ S
Sbjct: 21 FDTSITVLELKQLIAAE--SDIPAESQRLIYSGKVLKDNETVSSYKVQDGHTIHLVKS 76
>gi|328870224|gb|EGG18599.1| hypothetical protein DFA_04093 [Dictyostelium fasciculatum]
Length = 852
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 8 ISDITQN--QWQQTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
+SDI N Q V L V +V +LKE++ G Q+LIY GK+L DD+
Sbjct: 1 MSDININVKQLDGKVYTLKVTLATKVPELKEQLHELSGIN--TALQRLIYKGKVLRDDKD 58
Query: 64 LSEYNIDESKFIVVMLSKPKPTPAP 88
L Y I++ + + L++ P PAP
Sbjct: 59 LDFYKIEDG--VTLHLTERPPEPAP 81
>gi|357504261|ref|XP_003622419.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
gi|355497434|gb|AES78637.1| hypothetical protein MTR_7g037380 [Medicago truncatula]
Length = 176
Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+DV+ ++ ++EK Y Q LI+ GK+L D+ L++ + E F+VVMLSK
Sbjct: 78 MDVKTNIEDIQEK------DNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFLVVMLSK 130
>gi|334323559|ref|XP_001376050.2| PREDICTED: LOW QUALITY PROTEIN: large proline-rich protein BAG6
[Monodelphis domestica]
Length = 1121
Score = 39.7 bits (91), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VK+ KE I + +E Q+LIY G++L D++ L EYN+ K I ++ P T P
Sbjct: 39 VKEFKEHIAASV--SIPSEKQRLIYQGRVLQDEKKLQEYNVG-GKVIHLVERAPPQTQPP 95
Query: 89 YSG 91
SG
Sbjct: 96 SSG 98
>gi|325180982|emb|CCA15391.1| ubiquitin family protein putative [Albugo laibachii Nc14]
Length = 600
Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E KQL E++ + + Q+LI+ GK+L+D L Y I E + I + + T
Sbjct: 97 RECKQLLEELL-----DVPIDQQRLIFRGKVLNDTAKLLSYGIKEKETIYFVRGSTRSTK 151
Query: 87 APYSGPSDPTQPAGQESEATRP-------------ATATSDSMLKVFFERVNPYGGESED 133
+ S S+ Q A + ++ P A T S L F G S
Sbjct: 152 S--SASSNEAQSAASSNTSSVPILNNESTSAPFGTAAMTGTSNLMGGFPMPPSSNGPSAA 209
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISH 178
+ + P M+ + +NPE++ P VL+ QSNPA+ +L+
Sbjct: 210 NGSGMFGLPDMSSMQQNMLRNPEMMRQMMDSPLFQGLLDNPDVLRSTIQSNPAMQQLLEQ 269
Query: 179 NQEAFVRMLNEP 190
N + ++N+P
Sbjct: 270 NPQ-LNHIMNDP 280
>gi|296197691|ref|XP_002746388.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Callithrix
jacchus]
Length = 1077
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P+
Sbjct: 36 QMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQ 91
>gi|123439435|ref|XP_001310489.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121892261|gb|EAX97559.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 388
Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 5 AHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQAL 64
A+ I+ +Q + + ++D V+ LK +IQ ++G + QKL +AGK + D L
Sbjct: 127 ANSITIKSQTEKVYIIDNIDFNCSVEDLKNRIQDKEGIP--PDQQKLYFAGKQMEDGYTL 184
Query: 65 SEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQ 97
+YNI I ++L P Y P + T
Sbjct: 185 KDYNIHNGATISLVLRLRGAKPVIYLYPKEETN 217
>gi|431921575|gb|ELK18929.1| Large proline-rich protein BAT3 [Pteropus alecto]
Length = 1106
Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
>gi|340371797|ref|XP_003384431.1| PREDICTED: e3 ubiquitin-protein ligase UHRF1 [Amphimedon
queenslandica]
Length = 784
Score = 39.7 bits (91), Expect = 0.81, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
+++ L+E++ +E AE Q+L Y GK L D Q+L +Y++ + I + +S P+
Sbjct: 54 KIEALRERLVDHFDAE--AERQRLFYRGKQLVDGQSLFDYDVGLNDIIQIYISPPQTKTE 111
Query: 84 --PTPAPYSGPSDPTQPA 99
PT P +G P A
Sbjct: 112 TTPTDQPTNGADSPNDDA 129
>gi|326469376|gb|EGD93385.1| deubiquitination-protection protein dph1 [Trichophyton tonsurans
CBS 112818]
Length = 476
Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 43/207 (20%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK- 81
L V ++K+ + E+ + E Q+LIY+G++L D L+ + + E I ++ S
Sbjct: 24 LKPSSTVAEIKQILAGEEYANVPPERQRLIYSGRVLKDTDTLASHKVKEGHTIHLVKSAV 83
Query: 82 -----------------PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF---- 120
T + +G + P+G T A T +SML
Sbjct: 84 PAGGSSSGSASASASANNTTTASNAAGRGSQSTPSGAAGVPTNLAAGTGNSMLAGLTGAR 143
Query: 121 ---FERV------NPYGGES----EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQ 167
F ++ P GG D + + PQFQ QNP+++ ++QQ
Sbjct: 144 YAGFSQLPGAGMFGPDGGMGPLPDTDQILSMMENPQFQSTMNEALQNPQIIDMMIQQ--- 200
Query: 168 SNPALLELISHNQ----EAFVRMLNEP 190
NP L ++ + Q F RML +P
Sbjct: 201 -NPMLRDMPNARQILQSPEFRRMLTDP 226
>gi|325180981|emb|CCA15390.1| ubiquitin family protein putative [Albugo laibachii Nc14]
Length = 584
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E KQL E++ + + Q+LI+ GK+L+D L Y I E + I + + T
Sbjct: 81 RECKQLLEELL-----DVPIDQQRLIFRGKVLNDTAKLLSYGIKEKETIYFVRGSTRSTK 135
Query: 87 APYSGPSDPTQPAGQESEATRP-------------ATATSDSMLKVFFERVNPYGGESED 133
+ S S+ Q A + ++ P A T S L F G S
Sbjct: 136 S--SASSNEAQSAASSNTSSVPILNNESTSAPFGTAAMTGTSNLMGGFPMPPSSNGPSAA 193
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISH 178
+ + P M+ + +NPE++ P VL+ QSNPA+ +L+
Sbjct: 194 NGSGMFGLPDMSSMQQNMLRNPEMMRQMMDSPLFQGLLDNPDVLRSTIQSNPAMQQLLEQ 253
Query: 179 NQEAFVRMLNEP 190
N + ++N+P
Sbjct: 254 NPQ-LNHIMNDP 264
>gi|237833513|ref|XP_002366054.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|211963718|gb|EEA98913.1| ubiquitin, putative [Toxoplasma gondii ME49]
gi|221508044|gb|EEE33631.1| ubiquitin, putative [Toxoplasma gondii VEG]
Length = 399
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 18 QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q V L+ + VKQ+KEK ++ +E + Q+LIY G+IL D +S +++ + I
Sbjct: 15 QFVLELEPEWTVKQVKEKCATQ--TEIPVQAQRLIYKGRILKDADLISTHDVQDGHII 70
>gi|150866496|ref|XP_001386122.2| hypothetical protein PICST_85034 [Scheffersomyces stipitis CBS
6054]
gi|149387752|gb|ABN68093.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 361
Score = 39.3 bits (90), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 10 DITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEY 67
DIT T L V V LKE I + ++ A+ Q+LIY+GK+L D + ++ Y
Sbjct: 7 DITIKSSGDTKYELSVSPSLTVYDLKELIADK--ADIPADRQRLIYSGKVLKDTETIASY 64
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEAT 106
+ I ++ S + T AP + S+ T +G + A+
Sbjct: 65 KVQTGHTIHMVRSAARATGAPSA--SNATGTSGNTTSAS 101
>gi|22549552|ref|NP_689325.1| ubi gene product [Mamestra configurata NPV-B]
gi|215401377|ref|YP_002332681.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|22476731|gb|AAM95137.1| putative ubiquitin [Mamestra configurata NPV-B]
gi|198448877|gb|ACH88667.1| ubiquitin [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|390165345|gb|AFL64992.1| ubiquitin [Mamestra brassicae MNPV]
gi|401665753|gb|AFP95865.1| putative ubiquitin [Mamestra brassicae MNPV]
Length = 100
Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ V+QLK+KI ++G + Q+LIYAGK L D +S+YNI + I ++L
Sbjct: 21 DTVEQLKQKITDKEG--IPPDQQRLIYAGKQLEDSSTMSDYNIQKESTIHLVL 71
>gi|194389256|dbj|BAG65616.1| unnamed protein product [Homo sapiens]
Length = 1077
Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ +E I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFREHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|325180980|emb|CCA15389.1| ubiquitin family protein putative [Albugo laibachii Nc14]
Length = 594
Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
E KQL E++ + + Q+LI+ GK+L+D L Y I E + I + + T
Sbjct: 91 RECKQLLEELL-----DVPIDQQRLIFRGKVLNDTAKLLSYGIKEKETIYFVRGSTRSTK 145
Query: 87 APYSGPSDPTQPAGQESEATRP-------------ATATSDSMLKVFFERVNPYGGESED 133
+ S S+ Q A + ++ P A T S L F G S
Sbjct: 146 S--SASSNEAQSAASSNTSSVPILNNESTSAPFGTAAMTGTSNLMGGFPMPPSSNGPSAA 203
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISH 178
+ + P M+ + +NPE++ P VL+ QSNPA+ +L+
Sbjct: 204 NGSGMFGLPDMSSMQQNMLRNPEMMRQMMDSPLFQGLLDNPDVLRSTIQSNPAMQQLLEQ 263
Query: 179 NQEAFVRMLNEP 190
N + ++N+P
Sbjct: 264 NPQ-LNHIMNDP 274
>gi|326483042|gb|EGE07052.1| deubiquitination-protection protein dph1 [Trichophyton equinum CBS
127.97]
Length = 478
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 82/207 (39%), Gaps = 43/207 (20%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK- 81
L V ++K+ + E+ + E Q+LIY+G++L D L+ + + E I ++ S
Sbjct: 24 LKPSSTVAEIKQILAGEEYANVPPERQRLIYSGRVLKDTDTLASHKVKEGHTIHLVKSAV 83
Query: 82 -----------------PKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF---- 120
T + +G + P+G T A T +SML
Sbjct: 84 PAGGSSSGSASASASANNTTTASNAAGRGTQSTPSGAAGVPTNLAAGTGNSMLAGLTGAR 143
Query: 121 ---FERV------NPYGGES----EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQ 167
F ++ P GG D + + PQFQ QNP+++ ++QQ
Sbjct: 144 YAGFSQLPGAGMFGPDGGMGPLPDTDQILSMMENPQFQSTMNEALQNPQIIDMMIQQ--- 200
Query: 168 SNPALLELISHNQ----EAFVRMLNEP 190
NP L ++ + Q F RML +P
Sbjct: 201 -NPMLRDMPNARQILQSPEFRRMLTDP 226
>gi|221486256|gb|EEE24517.1| ubiquitin, putative [Toxoplasma gondii GT1]
Length = 399
Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 18 QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q V L+ + VKQ+KEK ++ +E + Q+LIY G+IL D +S +++ + I
Sbjct: 15 QFVLELEPEWTVKQVKEKCATQ--TEIPVQAQRLIYKGRILKDADLISTHDVQDGHII 70
>gi|302692528|ref|XP_003035943.1| hypothetical protein SCHCODRAFT_65782 [Schizophyllum commune H4-8]
gi|300109639|gb|EFJ01041.1| hypothetical protein SCHCODRAFT_65782 [Schizophyllum commune H4-8]
Length = 757
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 10 DITQNQWQ-----QTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQAL 64
D T+ +W+ T+S L + V L+++I GS +L Y GK+L++ +
Sbjct: 677 DDTKPEWKLDGTTVTLSELPLNLLVSTLRDRILQATGSAAPVSRIRLSYQGKMLTNSTTI 736
Query: 65 SEYNIDESKFIVVMLSKPK 83
+ +N++E +V+ +S PK
Sbjct: 737 ASHNLEEEDVLVLSVSAPK 755
>gi|432089434|gb|ELK23376.1| Large proline-rich protein BAG6 [Myotis davidii]
Length = 939
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPT 96
T P SG S T
Sbjct: 90 PQTQLP-SGASSGT 102
>gi|86355646|ref|YP_473314.1| Ubiquitin [Hyphantria cunea nucleopolyhedrovirus]
gi|86198251|dbj|BAE72415.1| Ubiquitin [Hyphantria cunea nucleopolyhedrovirus]
Length = 79
Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI--VVMLSKPKP 84
+ V Q+K+KI ++G + Q+LIYAGK L DD+ +++YNI + I V+ L KP
Sbjct: 21 DTVGQVKQKIADKEGVP--VDQQRLIYAGKQLEDDKTMADYNIQKESTIHMVLRLRGGKP 78
>gi|149028079|gb|EDL83530.1| rCG38346, isoform CRA_a [Rattus norvegicus]
Length = 716
Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|147832421|emb|CAN59673.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 439
Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|20070031|ref|NP_613235.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|20043425|gb|AAM09260.1| v-ubiquitin [Mamestra configurata NPV-A]
gi|33331863|gb|AAQ11171.1| putative ubiquitin [Mamestra configurata NPV-A]
Length = 100
Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ V+QLK+KI ++G + Q+LIYAGK L D +S+YNI + I ++L
Sbjct: 21 DTVEQLKQKITDKEG--IPPDQQRLIYAGKQLEDSSTMSDYNIQKESTIHLVL 71
>gi|356564406|ref|XP_003550445.1| PREDICTED: uncharacterized protein LOC100783611 [Glycine max]
Length = 947
Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D V KEKI +E G Q+LI+ GK+L D+ ALSEY ++ + ++ +P
Sbjct: 40 VDKNMPVSLFKEKIANEIG--VPVNQQRLIFRGKVLKDEHALSEYYVENGHTLHLVERQP 97
Query: 83 KPTPAPYSGPSDPTQPAG 100
+ A + + T +G
Sbjct: 98 NQSQASGTSSGESTGTSG 115
>gi|325677695|ref|ZP_08157347.1| ubiquitin family [Ruminococcus albus 8]
gi|324110663|gb|EGC04827.1| ubiquitin family [Ruminococcus albus 8]
Length = 646
Score = 39.3 bits (90), Expect = 0.96, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D++ L++YNI + + ++L
Sbjct: 56 LDVEPSDSIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDNRTLADYNIQKESTLHLVL 112
>gi|242022366|ref|XP_002431611.1| hypothetical protein Phum_PHUM537450 [Pediculus humanus corporis]
gi|212516919|gb|EEB18873.1| hypothetical protein Phum_PHUM537450 [Pediculus humanus corporis]
Length = 1267
Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
+ QLKE I + G E Q+LI+ GK+L D++ LS+Y D + ++ ++ +P P P+
Sbjct: 24 ILQLKESILEKMG--VPVEIQRLIFHGKVLQDEKKLSDYG-DVNGKVIHLVQRPPPPPS 79
>gi|295322002|pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 101
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 37 QDKWEVNVA---PESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDG 91
Query: 73 KFIVVMLSKP 82
+ ++ S+P
Sbjct: 92 HSVHLVKSQP 101
>gi|149028080|gb|EDL83531.1| rCG38346, isoform CRA_b [Rattus norvegicus]
Length = 701
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|46107726|ref|XP_380922.1| hypothetical protein FG00746.1 [Gibberella zeae PH-1]
Length = 445
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
T ++ QT++ + V LK K+ E E Q+LIY+G+++ +D LS Y I
Sbjct: 19 TSSEGHQTIT-MSETATVLDLKTKLAGEDFENIPVERQRLIYSGRVMKNDDTLSTYKIKN 77
Query: 72 SKFIVVMLS 80
+ I ++ S
Sbjct: 78 NNTIHMVKS 86
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
Q+R V+ +PE LP +L+ + + P L E I N E F+ ML + V G
Sbjct: 276 QLRGVINGDPEALPPLLESLSERYPELREQIMSNPEMFISMLLQAVGG 323
>gi|403307855|ref|XP_003944398.1| PREDICTED: large proline-rich protein BAG6 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 1041
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P+
Sbjct: 3 VKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQ 55
>gi|397633408|gb|EJK70964.1| hypothetical protein THAOC_07640 [Thalassiosira oceanica]
Length = 829
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML-- 79
H+ E V +K KIQ E G A Q+LIY G L + + LS+YNI E + ++L
Sbjct: 505 HVKPSETVDSVKMKIQYEIGMP--ANQQRLIYLGTQLENGRTLSDYNIQEDSTLHIVLRL 562
Query: 80 -SKP-KPTPAPYSGPSDPTQPAGQESEATR 107
S P P+ Y+ P P Q + + R
Sbjct: 563 RSGPSSPSGDDYAAP--PCQSSASRVKGGR 590
>gi|297290440|ref|XP_002808425.1| PREDICTED: LOW QUALITY PROTEIN: large proline-rich protein
BAT3-like [Macaca mulatta]
Length = 626
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 136 VGAQMNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 193
Query: 83 K 83
+
Sbjct: 194 Q 194
>gi|147832419|emb|CAN59671.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 237
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA 99
T P SG S T A
Sbjct: 90 PQTQLP-SGASSGTGSA 105
>gi|403300123|ref|XP_003940807.1| PREDICTED: uncharacterized protein LOC101032377 [Saimiri
boliviensis boliviensis]
Length = 458
Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 17 VEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>gi|407925275|gb|EKG18290.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 468
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---LSKPKPT 85
V LK K+ + + ++ AE Q+LIY+G++L D L + + I ++ S +
Sbjct: 34 VADLKGKLATSEYADTPAERQRLIYSGRVLKDHDTLESTKVKDGNTIHLVKSAASNARQN 93
Query: 86 PAPYSGPSDPTQPAG--QESEATRPATAT-SDSMLKVFFER------------VNPYGGE 130
PA G S T AG + + T AT T +D + + R P GG
Sbjct: 94 PA-NQGTSAATSGAGAPRNNVPTSFATGTGNDPLAGLTGARYAGMMGLPGAGTFGPDGGM 152
Query: 131 SE--DPLAFLR--TQPQFQQMRTVVQQNPELLPTVLQQIGQS-----NPALLELISHNQE 181
DP LR P Q+ T N P V+QQI S NP + ++ +
Sbjct: 153 GAPPDPDQLLRQLDDPNTLQLMTEAMNN----PIVIQQIRNSPMFRNNPMMQQMFDN--P 206
Query: 182 AFVRMLNEP 190
AF RML +P
Sbjct: 207 AFRRMLTDP 215
>gi|147832416|emb|CAN59668.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 172
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 107 VGAQMNVKEFKEHIAA--SVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 164
Query: 83 K 83
+
Sbjct: 165 Q 165
>gi|403307851|ref|XP_003944396.1| PREDICTED: large proline-rich protein BAG6 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 1090
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P+
Sbjct: 3 VKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQ 55
>gi|300121697|emb|CBK22272.2| unnamed protein product [Blastocystis hominis]
Length = 149
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
V+ LKE I++E+ A Q+LI+AGK L +D L+EYNI E + + L
Sbjct: 22 VEDLKEMIETEESVSVDA--QRLIFAGKQLENDHTLAEYNIQEESVLSMTL 70
>gi|403307853|ref|XP_003944397.1| PREDICTED: large proline-rich protein BAG6 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 1126
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P+
Sbjct: 3 VKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQ 55
>gi|383860746|ref|XP_003705850.1| PREDICTED: large proline-rich protein BAG6-like [Megachile
rotundata]
Length = 1175
Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKG-SEYLAEY-------QKLIYAGKILSDDQALSEYNID 70
TV LD Q L++ + +G E++AE Q+LIY G++L D++ L++Y+++
Sbjct: 5 TVKTLDSQNHAFSLEDDQITVRGFKEHIAESVAVPADSQRLIYCGRVLQDEKKLNDYDVN 64
Query: 71 ESKFIVVMLSKPKP 84
+V + P+P
Sbjct: 65 GKVIHLVQRAPPQP 78
>gi|149028085|gb|EDL83536.1| rCG38346, isoform CRA_g [Rattus norvegicus]
Length = 1183
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 70 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 127
Query: 83 K 83
+
Sbjct: 128 Q 128
>gi|326508654|dbj|BAJ95849.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 618
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 24 DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
D+ E V KE + + S+ A Q+LIY G+IL D+Q L Y ++ I
Sbjct: 88 DLGETVGAFKEAVAAS--SDVPAPQQRLIYKGRILKDEQTLESYGVETDHTI 137
>gi|303324323|ref|XP_003072149.1| Ubiquitin family protein [Coccidioides posadasii C735 delta SOWgp]
gi|240111859|gb|EER30004.1| Ubiquitin family protein [Coccidioides posadasii C735 delta SOWgp]
Length = 487
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 38/195 (19%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
++ LK K+ + ++ Q+LIY+G++L D L+ YN+ + I ++ S
Sbjct: 34 KIGNLKVKLSEPQYADVPPARQRLIYSGRVLKDHDTLATYNVKDGHTIHLVKSAASNQPP 93
Query: 84 -----PTPAPYSGPSDPTQPAGQESEATRPATATSDSML------------------KVF 120
+ A +G S P P T A T ++ L F
Sbjct: 94 QQSSQSSSATTAGRSAPQAPP--PGVPTNIAAGTGNNPLAGLTGARFAGYNMQLPGASFF 151
Query: 121 FERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQ 180
S + L + PQFQ M QNP+LL ++QQ NP L ++ +
Sbjct: 152 GPDGGMGPPPSTEQLINMLDNPQFQSMMNEALQNPQLLDMMIQQ----NPMLRDMGPGVR 207
Query: 181 E-----AFVRMLNEP 190
+ AF RML +P
Sbjct: 208 QMMQSPAFRRMLTDP 222
>gi|297853178|ref|XP_002894470.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297340312|gb|EFH70729.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 154
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 4 LAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
D +++ Q + S + V + +K +KEKIQ ++ ++L Q+LIY GK L DD+
Sbjct: 64 FVADAANVMFKQDNTSSSEVKVFDTIKSIKEKIQEKE--DFLFADQRLIYPGKQLEDDRT 121
Query: 64 LSEYNIDESKFIVVML 79
+S+ +I + +++ +
Sbjct: 122 ISDCHIQDGSTLILFV 137
>gi|149028084|gb|EDL83535.1| rCG38346, isoform CRA_f [Rattus norvegicus]
Length = 1097
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|77020272|ref|NP_446061.2| large proline-rich protein BAG6 isoform 2 [Rattus norvegicus]
gi|46237619|emb|CAE83997.1| HLA-B associated transcript 3, rat orthologue [Rattus norvegicus]
Length = 1096
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|357504017|ref|XP_003622297.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497312|gb|AES78515.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 697
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 581 SHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFL 640
Query: 76 VVMLSK 81
VVMLSK
Sbjct: 641 VVMLSK 646
>gi|320037167|gb|EFW19105.1| hypothetical protein CPSG_04651 [Coccidioides posadasii str.
Silveira]
Length = 487
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 38/195 (19%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
++ LK K+ + ++ Q+LIY+G++L D L+ YN+ + I ++ S
Sbjct: 34 KIGNLKVKLSEPQYADVPPARQRLIYSGRVLKDHDTLATYNVKDGHTIHLVKSAASNQPP 93
Query: 84 -----PTPAPYSGPSDPTQPAGQESEATRPATATSDSML------------------KVF 120
+ A +G S P P T A T ++ L F
Sbjct: 94 QQSSQSSSATTAGRSAPQAPP--PGVPTNIAAGTGNNPLAGLTGARFAGYNMQLPGASFF 151
Query: 121 FERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQ 180
S + L + PQFQ M QNP+LL ++QQ NP L ++ +
Sbjct: 152 GPDGGMGPPPSTEQLINMLDNPQFQSMMNEALQNPQLLDMMIQQ----NPMLRDMGPGVR 207
Query: 181 E-----AFVRMLNEP 190
+ AF RML +P
Sbjct: 208 QMMQSPAFRRMLTDP 222
>gi|77020274|ref|NP_001029140.1| large proline-rich protein BAG6 isoform 1 [Rattus norvegicus]
gi|317373327|sp|Q6MG49.2|BAG6_RAT RecName: Full=Large proline-rich protein BAG6; AltName:
Full=BCL2-associated athanogene 6; AltName:
Full=HLA-B-associated transcript 3
gi|71682190|gb|AAI00142.1| HLA-B-associated transcript 3 [Rattus norvegicus]
gi|149028083|gb|EDL83534.1| rCG38346, isoform CRA_e [Rattus norvegicus]
Length = 1146
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|149028086|gb|EDL83537.1| rCG38346, isoform CRA_h [Rattus norvegicus]
Length = 1139
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|149028082|gb|EDL83533.1| rCG38346, isoform CRA_d [Rattus norvegicus]
Length = 1044
Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|443712743|gb|ELU05907.1| hypothetical protein CAPTEDRAFT_221977 [Capitella teleta]
Length = 789
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q + L +++ L+EK+ +E Q L Y GK++ D +L +YN+ ++ I
Sbjct: 13 QTRLDGLSKLTKIEDLREKLVEHFEAE--PARQMLFYRGKLMVDGHSLFDYNVGLNEIIQ 70
Query: 77 VMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+M+ +P P P + S P G AT AT TSD
Sbjct: 71 IMV---RPAP-PKASTSQPATTNG----ATEAATTTSD 100
>gi|340383449|ref|XP_003390230.1| PREDICTED: hypothetical protein LOC100641314 [Amphimedon
queenslandica]
Length = 375
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD-------DQALSEYNIDESKFIVVML 79
+KQLK+KI K EY +L++AGK L D ++ L +YNI + I V++
Sbjct: 32 IKQLKKKISDSKAGLVAPEYMRLLFAGKQLEDEDSSTNEEKTLEDYNIQKRSAITVVM 89
>gi|149028081|gb|EDL83532.1| rCG38346, isoform CRA_c [Rattus norvegicus]
Length = 1037
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>gi|147832420|emb|CAN59672.1| HLA-B associated transcript 3 [Sus scrofa]
Length = 263
Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 33 VGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 89
Query: 83 KPTPAPYSGPSDPTQPA 99
T P SG S T A
Sbjct: 90 PQTQLP-SGASSGTGSA 105
>gi|281342586|gb|EFB18170.1| hypothetical protein PANDA_020412 [Ailuropoda melanoleuca]
Length = 1123
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P+
Sbjct: 3 VKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQ 55
>gi|119173559|ref|XP_001239204.1| hypothetical protein CIMG_10226 [Coccidioides immitis RS]
gi|392869415|gb|EJB11760.1| deubiquitination-protection protein dph1 [Coccidioides immitis RS]
Length = 487
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 77/195 (39%), Gaps = 38/195 (19%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK---- 83
++ LK K+ + ++ Q+LIY+G++L D L+ YN+ + I ++ S
Sbjct: 34 KIGDLKVKLSEPQYADVPPARQRLIYSGRVLKDHDTLATYNVKDGHTIHLVKSAASNQPP 93
Query: 84 -----PTPAPYSGPSDPTQPAGQESEATRPATATSDSML------------------KVF 120
+ A +G S P P T A T ++ L F
Sbjct: 94 QQSSQSSSATTAGRSAPQAPP--PGVPTNIAAGTGNNPLAGLTGARFAGYNMQLPGASFF 151
Query: 121 FERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQ 180
S + L + PQFQ M QNP+LL ++QQ NP L ++ +
Sbjct: 152 GPDGGMGPPPSTEQLINMLDNPQFQSMMNEALQNPQLLDMMIQQ----NPMLRDMGPGVR 207
Query: 181 E-----AFVRMLNEP 190
+ AF RML +P
Sbjct: 208 QMMQSPAFRRMLTDP 222
>gi|328869638|gb|EGG18015.1| UAS domain-containing protein [Dictyostelium fasciculatum]
Length = 507
Score = 38.5 bits (88), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+D V + K + ++ G AE Q++IY+G +L D Q LSEYN+ E +
Sbjct: 19 VDTSILVSEFKGLLATKSG--IPAEQQRIIYSGHVLKDHQKLSEYNVQEGHTV 69
>gi|301120650|ref|XP_002908052.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]
gi|262103083|gb|EEY61135.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]
Length = 529
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
L ++ V Q KE + + +E A Q+LIY GK+L DDQ L Y I
Sbjct: 18 LALENCVLQCKEALVTH--TEVPASLQRLIYKGKVLKDDQTLESYGI 62
>gi|440632362|gb|ELR02281.1| hypothetical protein GMDG_05350 [Geomyces destructans 20631-21]
Length = 444
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
V LK K+ SE+ AE Q+LIY+G++L +++ L+ Y I I
Sbjct: 35 VLDLKTKLASEEYENVPAERQRLIYSGRVLKNEEHLATYKIKNGNTI 81
>gi|301094249|ref|XP_002997968.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]
gi|262109754|gb|EEY67806.1| ubiquitin family protein, putative [Phytophthora infestans T30-4]
Length = 529
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
L ++ V Q KE + + +E A Q+LIY GK+L DDQ L Y I
Sbjct: 18 LALENCVLQCKEALVTH--TEVPASLQRLIYKGKVLKDDQTLESYGI 62
>gi|298713601|emb|CBJ27129.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 453
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT- 85
E V +K+K+Q +G E Q++IYAG+ SDD+ L + NI ++LS KP
Sbjct: 178 ETVLDVKKKVQDTQG--IPCEQQRIIYAGQQTSDDRTLRDCNIRNGSVAHLVLSLRKPVI 235
Query: 86 ----PAP 88
PAP
Sbjct: 236 LLYPPAP 242
>gi|357504019|ref|XP_003622298.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497313|gb|AES78516.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 416
Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 300 SHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFL 359
Query: 76 VVMLSK 81
VVMLSK
Sbjct: 360 VVMLSK 365
>gi|88192494|pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
gi|88192495|pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
gi|88192496|pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
gi|88192497|pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
gi|88192498|pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
Length = 77
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 13 QDKWEVNVA---PESTVLQFKEAINKANGIP--VANQRLIYSGKILKDDQTVESYHIQDG 67
Query: 73 KFIVVMLSKP 82
+ ++ S+P
Sbjct: 68 HSVHLVKSQP 77
>gi|390438282|ref|ZP_10226765.1| exported hypothetical protein [Microcystis sp. T1-4]
gi|389838309|emb|CCI30889.1| exported hypothetical protein [Microcystis sp. T1-4]
Length = 148
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ + +K+KIQ ++G L+E Q LI+AGK+L + + L++YNI
Sbjct: 48 DTIDNIKDKIQDKEG--ILSEQQTLIFAGKVLEEWRTLADYNI 88
>gi|124359456|gb|ABN05900.1| Ubiquitin [Medicago truncatula]
Length = 674
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 558 SHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFL 617
Query: 76 VVMLSK 81
VVMLSK
Sbjct: 618 VVMLSK 623
>gi|15227388|ref|NP_179311.1| ubiquitin-like protein [Arabidopsis thaliana]
gi|4584343|gb|AAD25138.1| putative ubiquitin-like protein [Arabidopsis thaliana]
gi|23296306|gb|AAN13037.1| putative ubiquitin protein [Arabidopsis thaliana]
gi|110735104|gb|ABG89122.1| Dsk2a [synthetic construct]
gi|330251503|gb|AEC06597.1| ubiquitin-like protein [Arabidopsis thaliana]
Length = 551
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 36/188 (19%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP---- 84
V+ KE + + S+ A Q+LIY G+IL DDQ L Y + I ++
Sbjct: 40 VESFKELV--AQSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMVRGSAPSSAPP 97
Query: 85 -------TPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAF 137
T AP T+ G ++ + + +S+ NP GG + F
Sbjct: 98 PAPAASQTTAPSV-----TRGVGSDNSSNLGGASPGESLFPGL--GFNPLGGGNAMSGLF 150
Query: 138 LRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEA 182
P Q + + QNP ++ P ++ + +NP + EL+ N E
Sbjct: 151 GAGLPDLVQTQQQLAQNPNMIRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPE- 209
Query: 183 FVRMLNEP 190
+LN+P
Sbjct: 210 LGHVLNDP 217
>gi|325186259|emb|CCA20765.1| ubiquitin family protein putative [Albugo laibachii Nc14]
Length = 439
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 31 QLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP-----T 85
++KEKI G Q+LIY G++L DDQ L+ Y +++ I + + +P
Sbjct: 146 KVKEKISELSGITIAT--QRLIYRGRVLEDDQQLATYEVEQGHTIHLFVRSVQPAAEITA 203
Query: 86 PAPYSGPSDPTQP---------AGQESEATRPATATSDSMLKV 119
P S DP P +EA P+ SD++ +V
Sbjct: 204 PINNSHVRDPQSPQENFPTLTFVNITNEAISPSVYPSDTLQRV 246
>gi|357504021|ref|XP_003622299.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
gi|355497314|gb|AES78517.1| hypothetical protein MTR_7g032690 [Medicago truncatula]
Length = 398
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K I+ +G + Y Q LI+ GK+L D+ L++ + E F+
Sbjct: 282 SHFEIRVHPSDSIMAVKTTIEDIQGKDNYPCRQQLLIHNGKVLKDETTLADNEVSEDGFL 341
Query: 76 VVMLSK 81
VVMLSK
Sbjct: 342 VVMLSK 347
>gi|194762710|ref|XP_001963477.1| GF20422 [Drosophila ananassae]
gi|190629136|gb|EDV44553.1| GF20422 [Drosophila ananassae]
Length = 554
Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 51 LIYAGKILSDDQALSEYNIDESKFIVVMLSKP-KPTPAPYSGPSDPTQ-PAGQE---SEA 105
LI+AGKI+ D L +NI ++ + +++ P + AP P+D Q P G A
Sbjct: 50 LIFAGKIMKDTDTLKMHNIKDNLTVHLVIKAPTRNNEAPARAPADVRQTPFGLNQFGGLA 109
Query: 106 TRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQI 165
A S R+ + D L L P QQM NPE ++Q+
Sbjct: 110 GMEALGAGSSTFMDLQARMQNELLNNGDMLRSLMDNPLVQQM----MNNPE----TMRQL 161
Query: 166 GQSNPALLELISHNQEAFVRMLNEP 190
SNP + +L+ N E MLN P
Sbjct: 162 ITSNPQMQDLMQRNPE-ISHMLNNP 185
>gi|109157814|pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157815|pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
gi|109157816|pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 27 EEVKQLKEKIQSEKGSEYLA---EYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G LA + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 76
>gi|336465198|gb|EGO53438.1| hypothetical protein NEUTE1DRAFT_74017 [Neurospora tetrasperma
FGSC 2508]
Length = 431
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
V QLK + E+ E Q+LIY+GK++ DD+ LS Y I V M+ +P
Sbjct: 35 VLQLKTLLAGEEYENISPEQQRLIYSGKVMKDDEVLSFYKIKHMN-TVHMVKRP 87
>gi|401623742|gb|EJS41830.1| YOL111C [Saccharomyces arboricola H-6]
Length = 214
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V QLK+++ SE + +L+E KL+ GK+L D LS+ I+ + + ++ KP P
Sbjct: 96 DTVLQLKQQLISEDKASHLSEI-KLLLKGKVLHDKLFLSDLKIEPANSTITVMIKPNPAI 154
Query: 87 APYSGPSDPT 96
A S +D T
Sbjct: 155 AKESEVTDST 164
>gi|224085986|ref|XP_002307766.1| predicted protein [Populus trichocarpa]
gi|222857215|gb|EEE94762.1| predicted protein [Populus trichocarpa]
Length = 918
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP-KPTPA 87
V KEKI +E G Q+LI+ G++L D+ LSEY ++ + ++ +P +P +
Sbjct: 46 VSVFKEKIANEIG--VPVSQQRLIFRGRVLKDEHLLSEYQVENGHTLHLVARQPAQPQHS 103
Query: 88 PYSGPSDPTQPAGQESEATRP 108
+ D T+ G + A P
Sbjct: 104 ADTSSGDTTRNNGNNASAGAP 124
>gi|14334546|gb|AAK59681.1| putative ubiquitin protein [Arabidopsis thaliana]
Length = 551
Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 36/188 (19%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP---- 84
V+ KE + + S+ A Q+LIY G+IL DDQ L Y + I ++
Sbjct: 40 VESFKELV--AQSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMVRGSAPSSAPP 97
Query: 85 -------TPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAF 137
T AP T+ G ++ + + +S+ NP GG + F
Sbjct: 98 PAPAASQTTAPSV-----TRGVGSDNSSNLGGASPGESLFPGL--GFNPLGGGNAMSGLF 150
Query: 138 LRTQPQFQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEA 182
P Q + + QNP ++ P ++ + +NP + EL+ N E
Sbjct: 151 GAGLPDLVQTQQQLAQNPNMIRDMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPE- 209
Query: 183 FVRMLNEP 190
+LN+P
Sbjct: 210 LGHVLNDP 217
>gi|405118327|gb|AFR93101.1| hypothetical protein CNAG_03598 [Cryptococcus neoformans var.
grubii H99]
Length = 397
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ + +LK+ I S+ E + Q+LIY+GK+L D++ +S Y I I ++ KP+
Sbjct: 33 KNIAELKQLIASKCDVE--KDRQRLIYSGKVLKDEETISSYKIQNGHTIHMVKGAAKPSS 90
Query: 87 APYSG 91
+ +G
Sbjct: 91 STSAG 95
>gi|58384921|ref|XP_313568.2| AGAP004294-PA [Anopheles gambiae str. PEST]
gi|55240678|gb|EAA09171.2| AGAP004294-PA [Anopheles gambiae str. PEST]
Length = 538
Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 73/186 (39%), Gaps = 51/186 (27%)
Query: 28 EVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
E+K LK I +EK E E LI+AGKI+ D L +NI E V ++ K P
Sbjct: 31 EIKDLK-AIVAEK-FETNQELVCLIFAGKIMKDTDTLKTHNIKEG-LTVYLVIKAAPR-- 85
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT----QPQ 143
A ES PA + P+G LA L Q
Sbjct: 86 -----------ADAESARRAPADVSQ-----------TPFGLNQLGGLAGLSALGGNQTN 123
Query: 144 FQQMRTVVQQ----NPELLPTVL---------------QQIGQSNPALLELISHNQEAFV 184
F +++ +Q NP+L+ TVL +QI SNP + EL+ N E
Sbjct: 124 FMDLQSRMQHELLDNPDLMRTVLDNPLVQQMMNNPDTMRQILTSNPQMQELMQRNPE-IS 182
Query: 185 RMLNEP 190
MLN P
Sbjct: 183 HMLNNP 188
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 38.1 bits (87), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPA 109
KLIY+GK+L D ++ + + ++ M+SK K T + P++ + A E A+ P
Sbjct: 43 KLIYSGKVLQDSNSIEGCGLKDGDQVIFMISKKKSTVTQVTEPTESKEVAAPEVAASAPV 102
Query: 110 TATSDS 115
++++
Sbjct: 103 AESTET 108
>gi|395325960|gb|EJF58375.1| ubiquitin-domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 339
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V ++K KI+ ++G Y + Q+LI+AG+ L + LS+YNI I ++ S P
Sbjct: 55 VSEIKNKIRDKEG--YPVDKQRLIFAGETLESSRVLSDYNIQRESTIRLLYSHKGGKPVI 112
Query: 89 Y 89
Y
Sbjct: 113 Y 113
>gi|256072339|ref|XP_002572493.1| ubiquilin 12 [Schistosoma mansoni]
gi|350644476|emb|CCD60789.1| ubiquilin 1,2, putative [Schistosoma mansoni]
Length = 543
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 10/165 (6%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK-PKPTPA 87
VK+L++ ++ K E +E LI+ GKIL D+ + + I + I +++SK +P+
Sbjct: 25 VKELRD--EASKAFETPSERLILIFGGKILKDEDTIEQLKIKDGFIIHLVISKQQQPSQV 82
Query: 88 PYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQF--Q 145
+G S G +R + S + VN + G + A + P+
Sbjct: 83 NPTGTSSVVTDVGDRPRESRSPSNPS----QTGANGVNTFAGMQQAMQAQVMQNPELLRN 138
Query: 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
+ + + Q+ P V++ + Q+NP + +LI N E MLN P
Sbjct: 139 MLDSPLVQSLMSNPEVIRSLFQANPQMRDLIERNPE-LGHMLNNP 182
>gi|116182184|ref|XP_001220941.1| hypothetical protein CHGG_01720 [Chaetomium globosum CBS 148.51]
gi|88186017|gb|EAQ93485.1| hypothetical protein CHGG_01720 [Chaetomium globosum CBS 148.51]
Length = 439
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 12 TQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ N T++ +D V LK K+ + A+ Q+LIY+G+I+ D ALS Y I
Sbjct: 19 SSNDKTHTIT-MDESASVLDLKTKLAGTDFEDIPADRQRLIYSGRIMKDSDALSVYKI 75
>gi|302415803|ref|XP_003005733.1| deubiquitination-protection protein dph1 [Verticillium albo-atrum
VaMs.102]
gi|261355149|gb|EEY17577.1| deubiquitination-protection protein dph1 [Verticillium albo-atrum
VaMs.102]
Length = 413
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTP 86
V +LK + E AE Q+LIY+G+++ +D L+ Y I + I +V + PTP
Sbjct: 35 VIELKTTLAGEAYENVPAERQRLIYSGRVMKNDDTLATYKIKPNNTIHMVKSAASNPTP 93
>gi|381353323|pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
gi|381353324|pdb|4DWF|B Chain B, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
Length = 90
Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P
Sbjct: 22 VGAQXNVKEFKEHIAAS--VSIPSEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAP 78
Query: 83 KPTPAPYSGPS 93
T P SG S
Sbjct: 79 PQTHLP-SGAS 88
>gi|346973786|gb|EGY17238.1| deubiquitination-protection protein dph1 [Verticillium dahliae
VdLs.17]
Length = 439
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTP 86
V +LK + E AE Q+LIY+G+++ +D L+ Y I + I +V + PTP
Sbjct: 35 VIELKTTLAGEAYENVPAERQRLIYSGRVMKNDDTLATYKIKPNNTIHMVKSAASNPTP 93
>gi|432895851|ref|XP_004076193.1| PREDICTED: ubiquitin domain-containing protein 2-like [Oryzias
latipes]
Length = 272
Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ V +K ++QS++G A Q+ ++G+ L+D L + NI + V+LS+ PT
Sbjct: 183 DTVGMMKRRLQSQEG--VPAATQRWFFSGRPLTDRLRLDQLNISRDYVVQVILSQRPPT- 239
Query: 87 APYSGPSDPTQPAGQESEATRPAT 110
+PT G EA+ P T
Sbjct: 240 -------EPTSKPGHSPEASVPVT 256
>gi|410493622|ref|YP_006908560.1| Viral Ubiquitin [Epinotia aporema granulovirus]
gi|354805056|gb|AER41478.1| Viral Ubiquitin [Epinotia aporema granulovirus]
Length = 93
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
++ E V +K+KI ++G + Q+LI+AGK L DD++LS+YNI
Sbjct: 17 VEASESVGSVKQKISDKEGVP--TDQQRLIFAGKQLDDDRSLSDYNI 61
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 16/80 (20%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP-------APY---------SGPS 93
KLI++GK+L D ++ N + ++ M+S K T AP S P+
Sbjct: 43 KLIFSGKVLKDGDSVESCNFKDGNEVIFMVSAKKATATKVTESSAPKAQSEETPSESTPA 102
Query: 94 DPTQPAGQESEATRPATATS 113
TQP ++E T PAT +S
Sbjct: 103 TSTQPETNQNETTEPATNSS 122
>gi|391332241|ref|XP_003740544.1| PREDICTED: uncharacterized protein LOC100902344 [Metaseiulus
occidentalis]
Length = 1042
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VK+ KE I SE + + Q++I+ GK+L DD+ L++ ++D+ K + ++ P P P
Sbjct: 25 VKEFKEHIASEVNVPW--DKQRIIFGGKVLQDDRKLADCHVDK-KTVHLVQKLPTLNPIP 81
>gi|324515150|gb|ADY46106.1| Polyubiquitin-A [Ascaris suum]
Length = 267
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+++ ++V+ +K KI ++G + Q+LIYAGK L DD+ LS+YNI + + ++L
Sbjct: 169 VELSDKVQHVKAKIYDKEGIP--PDQQRLIYAGKQLEDDRTLSDYNIQKESTVHLVL 223
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 56 KILSDDQALSEYNIDESKFIVVMLSKPK 83
KIL DD + YNI+E F+V M++KPK
Sbjct: 22 KILKDDDTVQSYNIEEKGFVVCMVNKPK 49
>gi|319997459|gb|ADV91357.1| v-ubiquitin [Spodoptera frugiperda MNPV]
gi|384087588|gb|AFH59068.1| v-ubiquitin [Spodoptera frugiperda MNPV]
Length = 80
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ V+QLK+KI ++G + Q+LIYAGK L D + +S+YNI + I ++L
Sbjct: 21 DTVEQLKQKIADKEGIP--PDQQRLIYAGKQLEDSRTMSDYNIQKESTIHLVL 71
>gi|299744014|ref|XP_002910736.1| hypothetical protein CC1G_15070 [Coprinopsis cinerea
okayama7#130]
gi|298405925|gb|EFI27242.1| hypothetical protein CC1G_15070 [Coprinopsis cinerea
okayama7#130]
Length = 428
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+ + V++LK+ I +EK S+ A+ Q+LIY+G++L D+ LS Y I S I
Sbjct: 26 ISTDKTVQELKQAI-AEK-SDVAADRQRLIYSGRVLKDEDLLSVYKIQSSHTI 76
>gi|156567742|gb|ABU82797.1| ubiquitin [Gracilaria textorii]
Length = 108
Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 6/93 (6%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVMLSK 81
++ + + +K KIQ ++G + Q+LI+AGK L DD+ LS+YNI ES +V+ +
Sbjct: 17 VEASDNIANVKTKIQDKEGIP--PDQQRLIFAGKQLEDDRTLSDYNIQKESTLHLVLRLR 74
Query: 82 P---KPTPAPYSGPSDPTQPAGQESEATRPATA 111
+PT A + ++ + ++ A P A
Sbjct: 75 GGLIEPTLAALARATNCDRMVCRKCYARLPPKA 107
>gi|90592852|ref|YP_529805.1| ubiquitin [Agrotis segetum nucleopolyhedrovirus]
gi|71559302|gb|AAZ38301.1| ubiquitin [Agrotis segetum nucleopolyhedrovirus]
Length = 78
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ V+QLK+KI ++G + Q+LIYAGK L D + +S+YNI + I ++L
Sbjct: 21 DTVEQLKQKITDKEGIP--PDQQRLIYAGKQLEDSRTMSDYNIQKESTIHLVL 71
>gi|345561243|gb|EGX44339.1| hypothetical protein AOL_s00193g67 [Arthrobotrys oligospora ATCC
24927]
Length = 491
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 4 LAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
++ + I N+ TV+ V LK+K+ + S A+ Q+LIY+G++L DDQ
Sbjct: 36 ISFTVKSIADNKIPITVNRFI---SVADLKQKL--AEPSSIPADRQRLIYSGRVLKDDQT 90
Query: 64 LSEYNI 69
L Y I
Sbjct: 91 LDNYKI 96
>gi|442762021|gb|JAA73169.1| Putative ubiquitin/40s ribosomal protein s27a fusion, partial
[Ixodes ricinus]
Length = 184
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 13 DTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 63
>gi|384485629|gb|EIE77809.1| hypothetical protein RO3G_02513 [Rhizopus delemar RA 99-880]
Length = 197
Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 16 WQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+Q T+ L + + LK++I ++ S Y + Q+L+ GK+L+D ++LSE ++ E +
Sbjct: 78 FQFTIGGLQPTDTILHLKQRIYQQQ-SAYPVQRQRLLVKGKVLNDQKSLSELSVQEGAVV 136
Query: 76 VVMLSKPKPTP 86
+ML+ P
Sbjct: 137 HLMLTAAPAAP 147
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS
421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS
421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS
421]
Length = 427
Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
LDV+ ++ Q K +S+ K+IY+GK+L D Q + E + E I+ M+SK
Sbjct: 25 LDVKSQLAQAKACEESQI---------KIIYSGKVLQDGQTVEECQLKEGDQIIFMISKK 75
Query: 83 KPT 85
K T
Sbjct: 76 KST 78
>gi|323230|gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus 1-Osloss]
Length = 3975
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
+ ++ +K KIQ ++G + Q+LI+AGK L D ++LS+YNI + + ++L P
Sbjct: 1611 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRSLSDYNIQKESTLHLVLRLRGSGP 1668
Query: 87 A 87
A
Sbjct: 1669 A 1669
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
+ KE I +K + A KLIYAGKIL D + +S N+ E ++ M+SK K
Sbjct: 23 ISHAKELIAEQKQCD--ASQIKLIYAGKILQDPKTVSGCNLKEGDQVIFMISKTK 75
>gi|449017268|dbj|BAM80670.1| ubiquitin-like protein Rub1 [Cyanidioschyzon merolae strain 10D]
Length = 108
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 4/60 (6%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
LD++ + ++++KE+I+ ++G + Q+LI+ GK L+DD++ EYNI+ + ++L+
Sbjct: 44 LDIEPHDPIQRIKERIEEKEGIP--PQQQRLIFGGKQLADDRSAREYNIEGGSVLHLVLA 101
>gi|123437477|ref|XP_001309534.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121891265|gb|EAX96604.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 388
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 4 LAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
LA+ I+ TQ + ++D+ +V LK+ I+ ++G + Q+LI+ GK + D+
Sbjct: 126 LANAITIKTQTGKEIVFLNIDLNSKVGYLKDMIKEKEG--ICPDQQRLIFKGKQMEDENT 183
Query: 64 LSEYNIDESKFIVVMLSKPKPTPAPYSGPSD 94
L +YN+ + I ++L P Y P +
Sbjct: 184 LMDYNVHDGDTINLILRLRGGKPVIYLYPKE 214
>gi|47498016|ref|NP_998846.1| homocysteine-inducible, endoplasmic reticulum stress-inducible,
ubiquitin-like domain member 1 [Xenopus (Silurana)
tropicalis]
gi|45709688|gb|AAH67925.1| homocysteine-inducible, endoplasmic reticulum stress-inducible,
ubiquitin-like domain member 1 [Xenopus (Silurana)
tropicalis]
Length = 370
Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V++LK +++ E E + + Q+LIYAGK+L D L+E ES+ ++ ++ + P
Sbjct: 30 VRELKTQLRQELPGEPMEQDQRLIYAGKLLPDHLKLNEVLSMESRHVLHLVCSKR---IP 86
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGG 129
+ D +Q G S + +D + + + N G
Sbjct: 87 LNQTQDSSQHPGCSSAQPHTVNSEADGIRQRILPQSNSADG 127
>gi|125860246|ref|YP_001036416.1| ubiquitin [Spodoptera frugiperda MNPV]
gi|120969391|gb|ABM45834.1| ubiquitin [Spodoptera frugiperda MNPV]
gi|167833805|gb|ACA02681.1| ubiquitin [Spodoptera frugiperda MNPV]
Length = 80
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ V+QLK+KI ++G + Q+LIYAGK L D + +S+YNI + I ++L
Sbjct: 21 DTVEQLKQKIADKEGIP--PDQQRLIYAGKQLEDSRTMSDYNIQKESTIHLVL 71
>gi|33346945|gb|AAP34634.1| ubiquitin/actin fusion protein [Gymnochlora stellata]
Length = 442
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+D + + +KEKIQ ++G + Q+LI+AGK L D+++L++YNI
Sbjct: 10 VDSSDTINTVKEKIQDKEGIP--PDQQRLIFAGKQLEDNRSLADYNI 54
>gi|392593552|gb|EIW82877.1| hypothetical protein CONPUDRAFT_163941 [Coniophora puteana
RWD-64-598 SS2]
Length = 235
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 45 LAEYQ-------KLIYAGKILSDDQA-LSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPT 96
LAEY KL++AG ++ DD A +S Y I E+ I ++ P SGP
Sbjct: 46 LAEYTHLPPDSFKLVHAGAVMKDDSAPISAYKIHENSLIALIGGNTTP-----SGP---- 96
Query: 97 QPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRT-QPQFQQMRTVVQQNP 155
Q S AT A +++K +RV G S F+RT P Q + Q
Sbjct: 97 ----QRSSATPAAEQNPSTVIKAELDRVRASLGPSVH--EFVRTISPDVQPAASAAQ--- 147
Query: 156 ELLPTV 161
LPTV
Sbjct: 148 --LPTV 151
>gi|195134312|ref|XP_002011581.1| GI11108 [Drosophila mojavensis]
gi|193906704|gb|EDW05571.1| GI11108 [Drosophila mojavensis]
Length = 557
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 51 LIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT-PAPYSGPSDPTQ-PAGQE---SEA 105
LI+AGKI+ D L +NI ++ + +++ P T AP P+D Q P G A
Sbjct: 50 LIFAGKIMKDTDTLKMHNIKDNLTVHLVIKAPTRTNEAPARAPADVRQTPFGLNHFGGLA 109
Query: 106 TRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQI 165
A + R+ + D L L P QQM NPE ++Q+
Sbjct: 110 GMEALGAGSNTFMDLQARMQNELLNNGDMLRSLMDNPLVQQM----MNNPE----TMRQL 161
Query: 166 GQSNPALLELISHNQEAFVRMLNEP 190
SNP + +L+ N E MLN P
Sbjct: 162 ITSNPQMQDLMQRNPE-ISHMLNNP 185
>gi|125981123|ref|XP_001354568.1| GA12838 [Drosophila pseudoobscura pseudoobscura]
gi|54642878|gb|EAL31622.1| GA12838 [Drosophila pseudoobscura pseudoobscura]
Length = 558
Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 72/163 (44%), Gaps = 28/163 (17%)
Query: 41 GSEYLAEYQKL--IYAGKILSDDQALSEYNI-DESKFIVVMLSKPKPTPAPYSGPSDPTQ 97
G ++ AE ++L I+AGKI+ D L +NI D+ +V+ S + AP P+D Q
Sbjct: 38 GQKFEAEPEQLVLIFAGKIMKDTDTLKMHNIKDQLTVHLVIKSPTRNNEAPARAPADVRQ 97
Query: 98 P----------AGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQM 147
AG E+ T D ++ E +N + D L L P QQM
Sbjct: 98 TPFGLNQFGGLAGMEALGAGSNTFM-DLQARMQNELLN-----NGDMLRSLMDNPLVQQM 151
Query: 148 RTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
NP+ ++Q+ SNP + +L+ N E MLN P
Sbjct: 152 ----MNNPD----TMRQLITSNPQMQDLMQRNPE-ITHMLNNP 185
>gi|356553321|ref|XP_003545005.1| PREDICTED: uncharacterized protein LOC100811870 [Glycine max]
Length = 943
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D V KEKI +E G Q+LI+ GK+L D+ LSEY+++ + ++ +P
Sbjct: 40 VDKNMPVSLFKEKIANEIG--VPVNQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQP 97
Query: 83 KPTPAPYSGPSDPTQPAGQESEA 105
+ A + T +G
Sbjct: 98 NQSQASGMSSGESTGTSGNRGNG 120
>gi|384250080|gb|EIE23560.1| hypothetical protein COCSUDRAFT_65980 [Coccomyxa subellipsoidea
C-169]
Length = 1369
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 24 DVQEEVKQLKEKIQSE--KGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
D++ E L + ++S+ + S A +Q+L++ G++L D+Q LS YN+ ++ +V ++++
Sbjct: 33 DLEVESDALIKDVKSQLTQVSNISASHQRLVFRGRVLKDNQRLSAYNVVDAS-VVHLVTR 91
Query: 82 P 82
P
Sbjct: 92 P 92
>gi|340385268|ref|XP_003391132.1| PREDICTED: hypothetical protein LOC100639838 [Amphimedon
queenslandica]
Length = 372
Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA-------LSEYNIDESKFIVVML 79
VK+LK+KI K EY +L++AGK L D+ A L +YNI + I V++
Sbjct: 32 VKKLKKKISESKAGLVNPEYMRLLFAGKQLEDEDASTHEEKTLEDYNIQKRSAITVVM 89
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.311 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,210,504,577
Number of Sequences: 23463169
Number of extensions: 131937030
Number of successful extensions: 606235
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 3001
Number of HSP's that attempted gapping in prelim test: 600686
Number of HSP's gapped (non-prelim): 8039
length of query: 203
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 68
effective length of database: 9,191,667,552
effective search space: 625033393536
effective search space used: 625033393536
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 73 (32.7 bits)