BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4259
(203 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVSTPAPAT 87
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 274 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 331
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 11 ITQNQWQQTVSHLDVQ--EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ E V+ LKEKI+SEKG + + QKLIYAGKIL+DD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPKP--TPAPYS 90
IDE F+VVM++KPK TPAP +
Sbjct: 63 KIDEKNFVVVMVTKPKAVTTPAPAT 87
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 275 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 3/76 (3%)
Query: 11 ITQNQWQQTVSHLDV--QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
+T QQ +D+ +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY
Sbjct: 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEY 62
Query: 68 NIDESKFIVVMLSKPK 83
IDE F+VVM++KPK
Sbjct: 63 KIDEKNFVVVMVTKPK 78
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 51/69 (73%)
Query: 126 PYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
P +DPL FLR+ PQFQQ+R +VQQNP++L T+LQQIGQ +PAL + I+ N EAF++
Sbjct: 238 PSNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQ 297
Query: 186 MLNEPVAGD 194
+L E G+
Sbjct: 298 LLAEGAEGE 306
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 15 QWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
Q + +S + ++ +LKEKIQ+++ Y E QKLIY+G+IL+DD+ + EYNI E F
Sbjct: 10 QQKFVISDVSADTKISELKEKIQTQQN--YEVERQKLIYSGRILADDKTVGEYNIKEQDF 67
Query: 75 IVVMLSKPK 83
IV M+S+PK
Sbjct: 68 IVCMVSRPK 76
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana
GN=RAD23-3 PE=2 SV=2
Length = 419
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQF 144
PA P++P PA + A PA+ + + L +F + + GG L FLR QF
Sbjct: 242 PASAGQPANP--PAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQF 299
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G + N+LG
Sbjct: 300 QALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 357
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 5/69 (7%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+H +++ + V +K+ I+S +G++ Y A Q LI+ GK+L D+ + E + E+ FI
Sbjct: 11 THFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFI 70
Query: 76 VVMLSKPKP 84
V+M++K KP
Sbjct: 71 VIMMNKSKP 79
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A
PE=2 SV=1
Length = 362
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S PS+ + A ES + P+ S
Sbjct: 72 VVVMVTKAKTSPG-TSVPSEASPTATPESSTSFPSAPAS 109
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 89 YSG-PSDPTQPA--------GQESEATRPATATSDSMLKVF-FERVNPYGGESEDPLAFL 138
YSG P T PA G+E A P+ + S L +F E V+ G L FL
Sbjct: 185 YSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFL 244
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNK 198
R QFQQ+R++V NP++L +LQ++G+ NP LL LI NQ F+++LNEP G +
Sbjct: 245 RGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDV 304
Query: 199 NVL 201
++
Sbjct: 305 DIF 307
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 21 SHLDVQ----EEVKQLKEKIQ-SEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ S+ Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGP 92
VVMLSK K A +GP
Sbjct: 71 VVMLSKSK--TASSAGP 85
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 12/110 (10%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSK----------PKPTPAPYSGPSDPTQPAGQESEATRPATATSD 114
+VVM++K P+ +P PS P P + P T+ D
Sbjct: 72 VVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSRED 121
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 14/96 (14%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQP 98
+VVM++K K PT AP S S P P
Sbjct: 72 VVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAP 107
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFF--ERVNPYGGESEDPLAFLRTQ 141
P A + P Q AG + PA+ +S F E V G L FLR
Sbjct: 191 PQTAEVAVPVPEAQIAGSGAAPVAPASGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNN 250
Query: 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
QFQQ+RT+V NP++L +LQ++G+ NP LL LI NQ F++++NEP G
Sbjct: 251 DQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEG 302
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 12/100 (12%)
Query: 21 SHLDVQ----EEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ +G + Y Q LI+ GK+L D+ +L E + E F+
Sbjct: 11 SHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K SG S Q + Q S ++P +AT+ S
Sbjct: 71 VVMLSKSK------SGGS-AGQASVQTSSVSQPVSATTSS 103
>sp|Q84L30|RD23D_ARATH Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana
GN=RAD23-4 PE=2 SV=2
Length = 378
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 43/60 (71%)
Query: 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
L FLR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 253 LDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGE 312
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V +K I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K +P
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 87 APYSGPSDPTQPAGQESEATRPATATS 113
SG S + PA AT+P T +
Sbjct: 81 ---SGASTASAPA---PSATQPQTVAT 101
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 67/119 (56%), Gaps = 12/119 (10%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPA------TATSDSMLKVFFERVNPYGGESED--PL 135
P P P P++PTQ S+AT+PA + + S L +F + + ++ L
Sbjct: 207 PVPPPSIQPANPTQ----ASQATQPAAPSILSSGPNASPLDLFPQALPNASTDAAGLGNL 262
Query: 136 AFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LR QF+ + ++VQ NP++L +LQ++G+ NP +L+LI NQ F+ ++NEP GD
Sbjct: 263 DALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGD 321
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 11/99 (11%)
Query: 23 LDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
+D ++V +K I++ +G Y AE Q LI+ GK+L DD L E + E+ F+V+ML +
Sbjct: 17 VDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQ 76
Query: 82 PKPT----PAPYSGPSD---PTQ--PAGQESEA-TRPAT 110
K + PA PS+ PTQ PA S+A PAT
Sbjct: 77 GKGSSSSAPATSKAPSNQAPPTQTVPAAPASQAPVAPAT 115
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
++P LR P F +R + +NP ++P +LQQ+ Q+NPAL+ I N F+R+
Sbjct: 223 DNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLF 278
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83
V +LK I SEK ++ +Q LIY+GKIL D + L YNI +S FIV+M+ KP+
Sbjct: 23 VAELKNLI-SEKHNQ-TPSWQTLIYSGKILEDKRTLESYNITDSGFIVMMIKKPR 75
>sp|P48510|DSK2_YEAST Ubiquitin domain-containing protein DSK2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DSK2 PE=1
SV=2
Length = 373
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVA---PESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKP 84
+ ++ S+PKP
Sbjct: 66 HSVHLVKSQPKP 77
>sp|Q6PA26|BAG6B_XENLA Large proline-rich protein bag6-B OS=Xenopus laevis GN=Bag6-b
PE=2 SV=1
Length = 1116
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
M A++ D+T V+ E VK+ K I S G E Q+LIY G++L +
Sbjct: 1 MAANEKMDVTVKTLDSQTRTFTVEAEILVKEFKAHISSAVG--ITPEKQRLIYQGRVLQE 58
Query: 61 DQALSEYNIDESKFIVVMLSKPK 83
D+ L+EYN+D +V + P+
Sbjct: 59 DKKLNEYNVDGKVIHLVERAPPQ 81
>sp|A4IH17|BAG6_XENTR Large proline-rich protein bag6 OS=Xenopus tropicalis GN=Bag6
PE=2 SV=1
Length = 1129
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + VK+ K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 17 VDAEITVKEFKTHISSDVG--ISPEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 74
Query: 83 K 83
+
Sbjct: 75 Q 75
>sp|A3KPW9|BAG6_DANRE Large proline-rich protein BAG6 OS=Danio rerio GN=Bag6 PE=3 SV=1
Length = 1160
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
VKQ KE I + E + Q+LIY GK+L D++ L+EYN+D
Sbjct: 29 VKQFKEHIAAS--VEISVDKQRLIYQGKVLQDERTLTEYNVD 68
>sp|Q9YHD3|BAG6A_XENLA Large proline-rich protein bag6-A OS=Xenopus laevis GN=Bag6-a
PE=2 SV=1
Length = 1135
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
++ + VK K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 23 VETEISVKDFKAHISSDVG--ISPEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 80
Query: 83 K 83
+
Sbjct: 81 Q 81
>sp|Q9Z1R2|BAG6_MOUSE Large proline-rich protein BAG6 OS=Mus musculus GN=Bag6 PE=1 SV=1
Length = 1154
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>sp|A7X5R6|BAG6_ORNAN Large proline-rich protein BAG6 OS=Ornithorhynchus anatinus GN=BAG6
PE=3 SV=1
Length = 1088
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VK+ KE I + + Q+LIY G++L DD+ L EYN+ K I ++ P T P
Sbjct: 46 VKEFKEHIAA--AVSIPPDKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAPPQTQGP 102
Query: 89 YSG 91
SG
Sbjct: 103 SSG 105
>sp|P46379|BAG6_HUMAN Large proline-rich protein BAG6 OS=Homo sapiens GN=BAG6 PE=1 SV=2
Length = 1132
Score = 40.0 bits (92), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>sp|A5D9M6|BAG6_PIG Large proline-rich protein BAG6 OS=Sus scrofa GN=BAG6 PE=2 SV=1
Length = 1128
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>sp|Q6MG49|BAG6_RAT Large proline-rich protein BAG6 OS=Rattus norvegicus GN=Bag6 PE=2
SV=2
Length = 1146
Score = 38.9 bits (89), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ Q VK+ KE I + +E Q+LIY G++L DD+ L +YN+ +V + P
Sbjct: 33 VGAQMNVKEFKEHIAASV--SIPSEKQRLIYQGRVLQDDKKLQDYNVGGKVIHLVERAPP 90
Query: 83 K 83
+
Sbjct: 91 Q 91
>sp|Q91WB7|UBTD1_MOUSE Ubiquitin domain-containing protein 1 OS=Mus musculus GN=Ubtd1 PE=2
SV=1
Length = 227
Score = 37.7 bits (86), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
+ V QLK ++ S++G E +Q+ ++GK+L+D L E I + I V++++P P
Sbjct: 169 DTVGQLKRQLHSQEGIE--PSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIINQPPP 224
>sp|Q68FV8|UBTD1_RAT Ubiquitin domain-containing protein 1 OS=Rattus norvegicus GN=Ubtd1
PE=2 SV=1
Length = 227
Score = 37.7 bits (86), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
+ V QLK ++ S++G E +Q+ ++GK+L+D L E I + I V++++P P
Sbjct: 169 DTVGQLKRQLHSQEGIE--PSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIINQPPP 224
>sp|Q05120|UBIL_NPVOP Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=V-UBI PE=3 SV=1
Length = 93
Score = 37.0 bits (84), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ V Q+K+KI ++G + Q+LIYAGK L D Q L++YNI
Sbjct: 21 DTVGQVKQKIADKEGVP--VDQQRLIYAGKQLEDAQTLADYNI 61
>sp|Q10169|DSK2_SCHPO Deubiquitination-protection protein dph1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dph1 PE=4 SV=1
Length = 354
Score = 37.0 bits (84), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ +D + V LKE I E E Q+LIYAG++L D+++L Y I + I
Sbjct: 14 QKYAVTVDSESSVLALKEAIAPVADIEK--ERQRLIYAGRVLKDEESLKTYKIQDGHSIH 71
Query: 77 VMLSKPKPTPAPYSGPSDPTQ 97
++ + + A + SD TQ
Sbjct: 72 LVKTLGQNPAAAATNVSDRTQ 92
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 37.0 bits (84), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 50 KLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA----PYSGPSDPTQPAGQESEA 105
KLIY+GK+L D + +SE + + +V M+S+ K T P P T P + S
Sbjct: 43 KLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKSTKTKVTEPPIAPESATTPGRENSTE 102
Query: 106 TRP 108
P
Sbjct: 103 ASP 105
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 147 MRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
+R VV NPE L +L+ I P L E I N E FV ML E V GD
Sbjct: 265 LRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV-GD 311
>sp|P0DJ25|RL40_TETTS Ubiquitin-60S ribosomal protein L40 OS=Tetrahymena thermophila
(strain SB210) GN=RPL40 PE=1 SV=1
Length = 129
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVML 79
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI ES +V+
Sbjct: 15 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 80 SKP---KPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+ +PT A + + + ++ A P AT+
Sbjct: 73 LRGGGMEPTIAALAKKYNCEKKVCRDCYARLPPKATN 109
>sp|P33190|RL40_TETPY Ubiquitin-60S ribosomal protein L40 OS=Tetrahymena pyriformis
GN=TUF11 PE=3 SV=2
Length = 129
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVML 79
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI ES +V+
Sbjct: 15 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Query: 80 SKP---KPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+ +PT A + + + ++ A P AT+
Sbjct: 73 LRGGGMEPTIAALAKKYNCEKKVCRDCYARLPPKATN 109
>sp|P46575|RL40_EIMBO Ubiquitin-60S ribosomal protein L40 OS=Eimeria bovis PE=2 SV=2
Length = 129
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 15 LDVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|P22589|UBIQP_PHYIN Polyubiquitin OS=Phytophthora infestans PE=1 SV=2
Length = 229
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + + +K+KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 15 LDVEPSDSIDNVKQKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + + +K+KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 91 LDVEPSDSIDNVKQKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 35.8 bits (81), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + + +K+KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 167 LDVEPSDSIDNVKQKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 213
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 OS=Homo sapiens GN=UBQLN4 PE=1 SV=2
Length = 601
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKL--IYAGKILSDDQALSEYNIDESKFIVVMLSKPK--- 83
VK+ KE+I + A+ +L I+AGKIL D L+++ I + + +++ P+
Sbjct: 34 VKEFKEEI----SRRFKAQQDQLVLIFAGKILKDGDTLNQHGIKDGLTVHLVIKTPQKAQ 89
Query: 84 -PTPAPYSGPSDPTQPAGQESEATRPAT 110
P A S PS P + + PAT
Sbjct: 90 DPAAATASSPSTPDPASAPSTTPASPAT 117
>sp|Q2T9Q2|UBL4B_BOVIN Ubiquitin-like protein 4B OS=Bos taurus GN=UBL4B PE=2 SV=1
Length = 165
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
QE V LK K+ SE+ E Q L++ G++L+DD+ LS+Y I + I V++ +P
Sbjct: 20 QESVAMLK-KLVSER-LHVPEEQQHLLFRGQLLADDKRLSDYRIGPNASISVVV-RPLEK 76
Query: 86 PAP 88
PAP
Sbjct: 77 PAP 79
>sp|P0CH28|UBC_BOVIN Polyubiquitin-C OS=Bos taurus GN=UBC PE=1 SV=1
Length = 690
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVMLSKPKPTPA 87
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI ES +V+ + +
Sbjct: 631 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVLSS 688
Query: 88 PY 89
P+
Sbjct: 689 PF 690
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 99 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 175 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 223
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 251 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 299
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 327 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 375
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 403 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 451
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 479 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 527
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 555 IENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 603
Score = 33.5 bits (75), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 23 IENVKGKIQEKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|Q12285|MDY2_YEAST Ubiquitin-like protein MDY2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MDY2 PE=1 SV=1
Length = 212
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
+ + Q+K+ + SE+ + +++E KL+ GK+L D+ LS+ + + + ++ KP PT
Sbjct: 96 DTILQIKQHLISEEKASHISEI-KLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNPT 153
>sp|P0C224|RL40_NEUCR Ubiquitin-60S ribosomal protein L40 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=ubi-1 PE=1 SV=2
Length = 128
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ + +K+KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIDNVKQKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|Q39256|UBQ8_ARATH Polyubiquitin 8 OS=Arabidopsis thaliana GN=UBQ8 PE=3 SV=1
Length = 631
Score = 35.0 bits (79), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ + +K KIQ ++G L Q+LI+AGK L D + L++YNI
Sbjct: 99 DTIDNVKAKIQDKEG--ILPRQQRLIFAGKQLEDGRTLADYNI 139
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + + +K KIQ+++G + Q+LI+AGK L D L++YNI
Sbjct: 17 LDVETSDSIHNVKAKIQNKEGIPL--DQQRLIFAGKQLEDGLTLADYNI 63
>sp|P0C031|RUB2_ORYSJ Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica
GN=RUB2 PE=2 SV=2
Length = 153
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ ++KE+++ ++G + Q+LIYAGK L+DD+ +YNI+ + ++L+
Sbjct: 99 IDRIKERVEEKEGIPPVQ--QRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 148
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ +K KIQ ++G + Q+LI+AGK L D + L++YNI
Sbjct: 23 IDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI 61
>sp|P0CG82|UBIQP_TETPY Polyubiquitin OS=Tetrahymena pyriformis GN=TU20 PE=3 SV=1
Length = 381
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 15 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 61
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 91 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 167 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 213
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 243 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 289
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 23 LDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 319 LDVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 365
>sp|P0CG73|UBI1P_CANAX Polyubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1
Length = 229
Score = 34.7 bits (78), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVMLSK 81
+ + +K KIQ ++G + Q+LI+AGK L D + LS+YNI ES +V+ S+
Sbjct: 21 DTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRSR 74
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ + +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 97 DTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 137
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ + +K KIQ ++G + Q+LI+AGK L D + LS+YNI
Sbjct: 173 DTIDNVKSKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNI 213
>sp|P0C030|RUB1_ORYSJ Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica
GN=RUB1 PE=2 SV=2
Length = 153
Score = 34.7 bits (78), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ ++KE+++ ++G + Q+LIYAGK L+DD+ +YNI+ + ++L+
Sbjct: 99 IDRIKERVEEKEGIPPVQ--QRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 148
Score = 31.6 bits (70), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ +K KIQ ++G + Q+LI+AGK L D + L++YNI
Sbjct: 23 IDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI 61
>sp|Q9SHE7|RUB1_ARATH Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1
PE=1 SV=3
Length = 156
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ ++KE+++ ++G + Q+LIYAGK L+DD+ +YNI+ + ++L+
Sbjct: 99 IDRIKERVEEKEGIPPVQ--QRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 148
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ +K KIQ ++G + Q+LI+AGK L D + L++YNI
Sbjct: 23 IDNVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLADYNI 61
>sp|P18101|RL40_DROME Ubiquitin-60S ribosomal protein L40 OS=Drosophila melanogaster
GN=RpL40 PE=1 SV=2
Length = 128
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|P0C276|RL40_SHEEP Ubiquitin-60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=2
SV=2
Length = 128
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|P62986|RL40_RAT Ubiquitin-60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52
PE=1 SV=2
Length = 128
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|P0C275|RL40_PONPY Ubiquitin-60S ribosomal protein L40 OS=Pongo pygmaeus GN=UBA52
PE=2 SV=2
Length = 128
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|P63053|RL40_PIG Ubiquitin-60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=1
SV=2
Length = 128
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>sp|P68205|RL40_OPHHA Ubiquitin-60S ribosomal protein L40 OS=Ophiophagus hannah PE=2
SV=2
Length = 128
Score = 34.3 bits (77), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 21 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,525,038
Number of Sequences: 539616
Number of extensions: 3153701
Number of successful extensions: 13717
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 13129
Number of HSP's gapped (non-prelim): 664
length of query: 203
length of database: 191,569,459
effective HSP length: 112
effective length of query: 91
effective length of database: 131,132,467
effective search space: 11933054497
effective search space used: 11933054497
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)