Query psy4259
Match_columns 203
No_of_seqs 253 out of 1470
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 20:49:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4259.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4259hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 100.0 4E-40 1.4E-44 288.9 16.6 186 6-193 6-295 (368)
2 3m62_B UV excision repair prot 99.8 2.8E-21 9.6E-26 141.7 8.8 77 8-86 2-79 (106)
3 4dwf_A HLA-B-associated transc 99.8 1.9E-20 6.4E-25 132.7 9.7 78 5-85 3-81 (90)
4 4a20_A Ubiquitin-like protein 99.8 2.3E-20 7.8E-25 135.1 9.0 78 3-82 15-97 (98)
5 1uel_A HHR23B, UV excision rep 99.8 7.9E-20 2.7E-24 131.2 11.3 77 8-86 1-81 (95)
6 3phx_B Ubiquitin-like protein 99.8 5.9E-20 2E-24 127.0 10.2 74 5-80 2-76 (79)
7 1pve_A HHR23B, UV excision rep 99.8 5E-21 1.7E-25 129.7 4.6 63 132-194 3-65 (72)
8 2wyq_A HHR23A, UV excision rep 99.8 1.3E-19 4.3E-24 126.9 10.2 77 5-83 3-83 (85)
9 2f4m_B UV excision repair prot 99.8 6.8E-20 2.3E-24 120.5 7.7 59 133-191 2-60 (61)
10 3plu_A Ubiquitin-like modifier 99.8 1.3E-19 4.3E-24 129.2 9.7 73 5-79 19-92 (93)
11 3v6c_B Ubiquitin; structural g 99.8 3.4E-19 1.2E-23 126.7 10.4 74 5-80 15-89 (91)
12 4fbj_B NEDD8; effector-HOST ta 99.8 4.2E-19 1.4E-23 125.6 10.1 74 8-83 1-75 (88)
13 2kk8_A Uncharacterized protein 99.8 2.3E-19 7.9E-24 126.2 8.6 73 6-80 9-83 (84)
14 2lxa_A Ubiquitin-like protein 99.8 1.3E-19 4.5E-24 128.3 7.2 73 8-82 2-79 (87)
15 1ttn_A DC-UBP, dendritic cell- 99.8 3.6E-19 1.2E-23 130.3 9.1 78 6-85 22-100 (106)
16 4eew_A Large proline-rich prot 99.8 4.6E-19 1.6E-23 125.0 9.3 73 5-80 15-88 (88)
17 2faz_A Ubiquitin-like containi 99.8 8.8E-19 3E-23 120.7 10.3 73 7-81 2-77 (78)
18 3dbh_I NEDD8; cell cycle, acti 99.8 7.5E-19 2.5E-23 123.5 9.3 75 5-81 10-85 (88)
19 1wia_A Hypothetical ubiquitin- 99.8 1.3E-18 4.4E-23 124.6 10.5 76 5-85 5-82 (95)
20 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.4E-18 4.9E-23 124.3 10.5 74 8-83 2-76 (96)
21 1uh6_A Ubiquitin-like 5; beta- 99.8 3.9E-19 1.3E-23 128.7 7.5 71 7-79 28-99 (100)
22 2dzi_A Ubiquitin-like protein 99.8 1.1E-18 3.6E-23 120.8 9.5 75 5-81 5-80 (81)
23 4hcn_B Polyubiquitin, ubiquiti 99.8 9.7E-19 3.3E-23 126.2 9.4 75 6-82 21-96 (98)
24 1wx7_A Ubiquilin 3; ubiquitin- 99.8 1.9E-18 6.4E-23 126.4 11.1 76 6-84 16-92 (106)
25 3n3k_B Ubiquitin; hydrolase, p 99.8 1.2E-18 4E-23 121.7 9.1 76 6-83 2-78 (85)
26 1v5o_A 1700011N24RIK protein; 99.8 1.4E-18 4.9E-23 126.3 9.8 78 5-84 5-88 (102)
27 1ndd_A NEDD8, protein (ubiquit 99.8 2.1E-18 7E-23 117.6 9.9 72 8-81 1-73 (76)
28 2hj8_A Interferon-induced 17 k 99.8 8.1E-19 2.8E-23 124.1 8.1 76 6-83 3-79 (88)
29 3mtn_B UBA80, ubcep1, ubiquiti 99.8 1.9E-18 6.5E-23 120.5 9.8 75 6-82 2-77 (85)
30 1wgg_A Ubiquitin carboxyl-term 99.8 1.5E-18 5.2E-23 124.9 9.4 75 5-83 5-81 (96)
31 1yqb_A Ubiquilin 3; structural 99.8 1.6E-18 5.5E-23 125.7 9.4 79 2-83 17-96 (100)
32 1wgd_A Homocysteine-responsive 99.8 1.8E-18 6.1E-23 123.5 9.3 76 6-83 6-88 (93)
33 3a9j_A Ubiquitin; protein comp 99.8 3.5E-18 1.2E-22 116.5 10.1 72 8-81 1-73 (76)
34 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.6E-18 8.8E-23 120.7 9.5 78 4-83 4-82 (87)
35 2bwf_A Ubiquitin-like protein 99.8 3.5E-18 1.2E-22 117.1 10.0 71 7-80 4-75 (77)
36 1wju_A NEDD8 ultimate buster-1 99.8 1.5E-18 5.1E-23 125.6 8.4 73 9-83 17-94 (100)
37 1x1m_A Ubiquitin-like protein 99.8 2.6E-18 9E-23 125.9 9.9 80 2-83 7-102 (107)
38 1wy8_A NP95-like ring finger p 99.8 4.2E-18 1.4E-22 120.2 10.5 77 5-83 5-84 (89)
39 1sif_A Ubiquitin; hydrophobic 99.8 4E-18 1.4E-22 120.6 9.8 74 7-82 9-83 (88)
40 2uyz_B Small ubiquitin-related 99.8 2.2E-18 7.5E-23 119.1 7.9 75 6-82 2-77 (79)
41 2klc_A Ubiquilin-1; ubiquitin- 99.8 6.9E-18 2.4E-22 122.5 10.6 76 5-83 23-99 (101)
42 1j8c_A Ubiquitin-like protein 99.8 5.9E-18 2E-22 127.5 10.5 76 5-83 30-106 (125)
43 2kan_A Uncharacterized protein 99.7 4.8E-18 1.7E-22 121.8 9.4 76 5-83 13-90 (94)
44 1wyw_B Ubiquitin-like protein 99.7 5.6E-18 1.9E-22 122.0 8.5 75 6-82 20-95 (97)
45 1wx8_A Riken cDNA 4931431F19; 99.7 3.2E-18 1.1E-22 122.7 6.9 75 6-83 16-91 (96)
46 2daf_A FLJ35834 protein; hypot 99.7 1.2E-17 4.2E-22 123.3 10.0 78 5-84 13-92 (118)
47 3vdz_A Ubiquitin-40S ribosomal 99.7 1.2E-17 4.3E-22 123.1 10.0 73 7-81 35-108 (111)
48 1yx5_B Ubiquitin; proteasome, 99.7 1.7E-17 5.8E-22 119.4 10.5 74 8-83 1-75 (98)
49 3m63_B Ubiquitin domain-contai 99.7 4.2E-18 1.4E-22 123.7 7.1 72 7-81 28-100 (101)
50 2ojr_A Ubiquitin; lanthide-bin 99.7 2.1E-17 7.3E-22 121.8 10.4 77 4-82 32-109 (111)
51 1wgh_A Ubiquitin-like 3, HCG-1 99.7 3.4E-17 1.2E-21 121.7 11.4 78 5-82 14-100 (116)
52 1v2y_A 3300001G02RIK protein; 99.7 4.2E-18 1.5E-22 124.5 6.2 77 5-83 5-98 (105)
53 2l7r_A Ubiquitin-like protein 99.7 1E-17 3.6E-22 119.7 8.1 73 5-81 17-90 (93)
54 2qsf_X RAD23, UV excision repa 99.7 2.3E-18 7.7E-23 135.3 4.7 63 131-193 21-84 (171)
55 2kdb_A Homocysteine-responsive 99.7 6.6E-18 2.3E-22 122.3 6.7 74 4-78 20-99 (99)
56 1wxv_A BAG-family molecular ch 99.7 2.7E-17 9.4E-22 117.0 9.3 76 5-83 5-87 (92)
57 3b1l_X E3 ubiquitin-protein li 99.6 5.3E-19 1.8E-23 121.1 0.0 72 8-81 1-73 (76)
58 2gow_A HCG-1 protein, ubiquiti 99.7 3.4E-17 1.2E-21 123.2 9.4 77 6-82 16-101 (125)
59 3l0w_B Monoubiquitinated proli 99.7 6.9E-17 2.3E-21 127.6 10.5 74 8-83 1-75 (169)
60 3rt3_B Ubiquitin-like protein 99.7 7.7E-17 2.6E-21 125.3 10.5 76 5-82 79-155 (159)
61 1v86_A DNA segment, CHR 7, way 99.7 2.4E-17 8.1E-22 118.4 6.9 74 5-82 15-89 (95)
62 2kdi_A Ubiquitin, vacuolar pro 99.7 1.2E-16 4.2E-21 118.4 10.9 75 7-83 9-84 (114)
63 4ajy_B Transcription elongatio 99.7 4.4E-17 1.5E-21 120.9 7.9 72 8-81 1-81 (118)
64 2kd0_A LRR repeats and ubiquit 99.7 7.4E-17 2.5E-21 113.4 8.7 69 10-80 14-83 (85)
65 1we6_A Splicing factor, putati 99.7 1.1E-16 3.6E-21 118.0 9.8 77 5-83 25-106 (111)
66 1se9_A Ubiquitin family; ubiqu 99.7 9.7E-17 3.3E-21 120.6 9.4 78 5-82 14-104 (126)
67 1v5t_A 8430435I17RIK protein; 99.7 9.5E-17 3.3E-21 114.0 8.7 75 5-82 5-84 (90)
68 2fnj_B Transcription elongatio 99.7 4.2E-17 1.4E-21 121.2 6.8 71 8-80 1-80 (118)
69 3u30_A Ubiquitin, linear DI-ub 99.7 2E-16 6.7E-21 124.8 10.4 76 5-82 18-94 (172)
70 3rt3_B Ubiquitin-like protein 99.7 2.2E-16 7.5E-21 122.7 9.7 72 8-81 3-77 (159)
71 4dbg_A Ranbp-type and C3HC4-ty 99.7 2.8E-16 9.7E-21 114.5 9.5 73 7-81 24-100 (105)
72 3q3f_A Ribonuclease/ubiquitin 99.7 1.8E-16 6.2E-21 127.1 8.7 74 7-82 105-179 (189)
73 3b08_A Polyubiquitin-C, ubiqui 99.6 9.6E-16 3.3E-20 117.5 10.4 73 8-82 1-74 (152)
74 3u5e_m 60S ribosomal protein L 99.6 1.4E-17 4.8E-22 125.8 0.0 74 8-83 1-75 (128)
75 1we7_A SF3A1 protein; structur 99.6 9.3E-16 3.2E-20 113.6 9.2 77 5-83 23-110 (115)
76 3b08_A Polyubiquitin-C, ubiqui 99.6 2.1E-15 7.1E-20 115.6 11.0 75 6-82 75-150 (152)
77 3u30_A Ubiquitin, linear DI-ub 99.6 1.1E-15 3.8E-20 120.4 9.3 75 5-81 94-169 (172)
78 2dzj_A Synaptic glycoprotein S 99.6 9.9E-16 3.4E-20 108.5 6.6 69 7-77 10-85 (88)
79 4b6w_A Tubulin-specific chaper 99.6 1.6E-15 5.6E-20 106.9 7.2 73 8-82 3-85 (86)
80 3u5c_f 40S ribosomal protein S 99.6 7.6E-17 2.6E-21 125.2 0.0 73 8-82 1-74 (152)
81 2kjr_A CG11242; UBL, ubiquitin 99.6 5.8E-15 2E-19 106.0 8.2 72 5-78 13-93 (95)
82 1wf9_A NPL4 family protein; be 99.6 4.8E-15 1.6E-19 108.5 7.9 73 6-81 6-95 (107)
83 3ai5_A Yeast enhanced green fl 99.6 7.4E-15 2.5E-19 125.6 10.1 74 5-80 231-305 (307)
84 2dzm_A FAS-associated factor 1 99.6 3.6E-15 1.2E-19 108.0 6.9 72 7-81 8-82 (100)
85 1v6e_A Cytoskeleton-associated 99.6 1.8E-14 6.3E-19 103.1 9.5 75 7-83 7-90 (95)
86 2kj6_A Tubulin folding cofacto 99.6 1.3E-14 4.6E-19 104.5 8.7 74 5-80 12-95 (97)
87 1t0y_A Tubulin folding cofacto 99.5 3.8E-14 1.3E-18 106.1 9.6 80 2-83 1-89 (122)
88 2kzr_A Ubiquitin thioesterase 99.5 3.1E-14 1E-18 100.1 7.2 71 8-80 1-77 (86)
89 3shq_A UBLCP1; phosphatase, hy 99.5 2.1E-14 7.3E-19 123.8 7.4 78 3-83 1-82 (320)
90 2xzm_9 RPS31E; ribosome, trans 99.4 8.5E-15 2.9E-19 117.1 0.0 67 8-81 1-68 (189)
91 2io1_B Small ubiquitin-related 99.4 5.1E-13 1.7E-17 95.6 9.1 75 6-82 6-81 (94)
92 2io0_B Small ubiquitin-related 99.4 7.3E-13 2.5E-17 94.2 9.3 78 3-82 1-79 (91)
93 1wm3_A Ubiquitin-like protein 99.4 1.8E-12 6.3E-17 88.1 9.0 69 8-78 2-71 (72)
94 3a4r_A Nfatc2-interacting prot 99.4 3.9E-12 1.3E-16 88.1 9.4 72 5-78 5-78 (79)
95 2d07_B Ubiquitin-like protein 99.3 7.5E-12 2.6E-16 89.3 9.3 74 6-81 16-90 (93)
96 1wjn_A Tubulin-folding protein 99.3 1.2E-11 4E-16 88.6 9.7 79 2-82 4-94 (97)
97 1wz0_A Ubiquitin-like protein 99.3 1.2E-11 4E-16 90.0 9.2 75 6-82 23-98 (104)
98 2k8h_A Small ubiquitin protein 99.2 1.3E-11 4.6E-16 90.6 7.1 74 6-81 25-99 (110)
99 2eke_C Ubiquitin-like protein 99.2 3.5E-11 1.2E-15 87.8 8.6 73 6-81 30-103 (106)
100 3kyd_D Small ubiquitin-related 99.0 3.4E-09 1.2E-13 78.1 9.7 73 6-80 39-112 (115)
101 2pjh_A Protein NPL4, nuclear p 98.7 9.7E-09 3.3E-13 71.0 4.5 70 6-78 3-78 (80)
102 3pge_A SUMO-modified prolifera 98.7 5.5E-08 1.9E-12 78.3 9.1 75 6-83 28-103 (200)
103 3tix_A Ubiquitin-like protein 98.7 4.1E-08 1.4E-12 78.1 7.2 74 7-83 57-131 (207)
104 3goe_A DNA repair protein RAD6 98.6 3.1E-07 1.1E-11 62.5 9.7 70 8-79 10-81 (82)
105 2jxx_A Nfatc2-interacting prot 98.5 7.4E-07 2.5E-11 63.7 8.3 71 6-78 24-96 (97)
106 3v7o_A Minor nucleoprotein VP3 98.3 5.9E-08 2E-12 78.2 0.0 74 7-83 21-95 (227)
107 2l76_A Nfatc2-interacting prot 98.2 9E-06 3.1E-10 57.5 9.0 72 7-81 21-93 (95)
108 3uf8_A Ubiquitin-like protein 98.1 9.5E-06 3.3E-10 65.6 8.4 75 6-83 20-95 (209)
109 2bps_A YUKD protein; ubiquitin 98.0 1.4E-05 4.9E-10 55.1 6.6 70 8-77 5-80 (81)
110 4efo_A Serine/threonine-protei 98.0 2.7E-05 9.4E-10 55.1 7.7 68 9-78 14-86 (94)
111 3qx1_A FAS-associated factor 1 97.9 4.4E-05 1.5E-09 52.7 8.1 70 6-78 6-81 (84)
112 3ix6_A TS, tsase, thymidylate 97.9 1.4E-06 4.7E-11 75.7 0.0 74 6-82 20-94 (360)
113 2kc2_A Talin-1, F1; FERM, adhe 97.9 1.6E-05 5.3E-10 59.5 5.6 67 9-77 13-119 (128)
114 2al3_A TUG long isoform; TUG U 97.8 8.7E-05 3E-09 52.0 8.0 76 5-82 7-83 (90)
115 2dzk_A UBX domain-containing p 97.8 0.00021 7.1E-09 51.8 10.1 72 7-80 13-90 (109)
116 4da1_A Protein phosphatase 1K, 97.7 5.6E-06 1.9E-10 72.6 0.0 74 7-83 30-104 (389)
117 1wj4_A KIAA0794 protein; UBX d 97.4 0.00043 1.5E-08 51.4 7.2 70 6-78 42-117 (124)
118 2cr5_A Reproduction 8; UBX dom 97.2 0.0024 8E-08 46.1 8.9 69 7-78 23-96 (109)
119 1s3s_G P47 protein; AAA ATPase 97.0 0.0017 5.8E-08 48.2 6.9 69 6-75 51-123 (127)
120 2lnm_A Protein TIC 40, chlorop 96.5 0.0032 1.1E-07 40.9 4.5 41 132-177 10-51 (62)
121 2llw_A Heat shock protein STI1 96.4 0.0031 1E-07 42.2 4.0 38 135-177 22-59 (71)
122 2daj_A KIAA0977 protein, COBL- 96.2 0.024 8.3E-07 39.0 7.4 75 3-82 6-84 (91)
123 4e71_A Plexin-B2, MM1; transme 95.4 0.076 2.6E-06 38.4 7.8 72 7-78 11-108 (111)
124 2l32_A Small archaeal modifier 95.2 0.062 2.1E-06 35.9 6.4 59 8-78 1-60 (74)
125 2r2o_A Plexin-B1; effector dom 95.1 0.11 3.7E-06 38.9 8.1 75 7-81 24-129 (138)
126 1ryj_A Unknown; beta/alpha pro 95.1 0.21 7.1E-06 32.7 8.6 60 7-78 4-64 (70)
127 3jyu_A Ubiquitin carboxyl-term 94.7 0.2 6.8E-06 40.6 9.4 72 8-81 140-221 (231)
128 4a3p_A Ubiquitin carboxyl-term 94.7 0.14 4.8E-06 41.0 8.5 73 7-81 127-209 (217)
129 3h6n_A Plexin-D1; structural g 94.5 0.41 1.4E-05 35.3 9.6 65 16-80 15-104 (127)
130 3ivf_A Talin-1; FERM domain, c 94.4 0.11 3.9E-06 44.6 7.7 70 8-78 4-82 (371)
131 2llv_A Heat shock protein STI1 94.2 0.023 8E-07 37.7 2.3 40 133-177 22-63 (71)
132 2llw_A Heat shock protein STI1 93.0 0.27 9.3E-06 32.6 5.9 46 135-187 13-58 (71)
133 4e74_A Plexin-A4; RBD, structu 92.4 0.56 1.9E-05 34.1 7.4 74 7-80 13-114 (117)
134 3rpf_C Molybdopterin convertin 92.3 0.72 2.4E-05 30.2 7.3 64 8-78 1-68 (74)
135 1oey_A P67-PHOX, neutrophil cy 92.1 0.41 1.4E-05 32.7 5.9 46 6-55 4-50 (83)
136 2juo_A GA-binding protein alph 92.1 0.5 1.7E-05 32.3 6.2 57 22-80 8-64 (89)
137 1vjk_A Molybdopterin convertin 91.9 1.6 5.4E-05 30.1 9.1 67 7-78 9-92 (98)
138 1wgk_A Riken cDNA 2900073H19 p 91.7 0.39 1.3E-05 34.6 5.9 72 2-78 7-102 (114)
139 1tyg_B YJBS; alpha beta barrel 91.5 0.65 2.2E-05 31.9 6.5 62 6-78 19-81 (87)
140 3onh_A Ubiquitin-activating en 90.0 0.78 2.7E-05 33.8 6.1 51 26-79 19-78 (127)
141 3hm6_X Plexin-B1; structural g 89.0 2.2 7.5E-05 39.4 9.5 75 7-81 257-362 (644)
142 2lnm_A Protein TIC 40, chlorop 88.8 0.39 1.3E-05 30.7 3.3 46 135-187 5-50 (62)
143 1wgy_A RAP guanine nucleotide 88.5 4.2 0.00014 28.8 8.8 77 2-80 4-86 (104)
144 3ig3_A Plxna3 protein; plexin 87.2 3.6 0.00012 37.9 9.7 75 7-81 233-335 (627)
145 3po0_A Small archaeal modifier 87.1 4.8 0.00017 26.9 8.4 55 18-78 18-83 (89)
146 2juj_A E3 ubiquitin-protein li 85.7 0.12 4E-06 32.4 -0.5 15 110-124 8-22 (56)
147 1ef1_A Moesin; membrane, FERM 85.6 5.3 0.00018 32.6 9.5 72 7-81 1-79 (294)
148 1vd2_A Protein kinase C, IOTA 85.6 4.9 0.00017 27.6 7.7 49 4-55 3-53 (89)
149 3kuz_A Plexin-C1; structural g 84.5 7.4 0.00025 28.4 8.6 60 19-78 40-124 (126)
150 2k9x_A Tburm1, uncharacterized 84.1 0.72 2.5E-05 33.0 3.0 68 7-78 4-96 (110)
151 1f0z_A THis protein; ubiquitin 84.0 1.8 6.2E-05 27.5 4.7 50 22-78 11-60 (66)
152 3ivf_A Talin-1; FERM domain, c 83.7 5.5 0.00019 33.8 9.0 72 7-79 85-166 (371)
153 1pve_A HHR23B, UV excision rep 83.3 0.4 1.4E-05 31.9 1.2 9 151-159 37-45 (72)
154 3dwg_C 9.5 kDa culture filtrat 83.3 6.4 0.00022 26.5 7.6 69 8-78 1-87 (93)
155 2g3q_A Protein YBL047C; endocy 82.9 0.34 1.2E-05 28.5 0.7 15 110-124 5-19 (43)
156 1vg5_A RSGI RUH-014, rhomboid 82.1 1.7 5.9E-05 28.8 4.0 15 110-124 30-44 (73)
157 1h4r_A Merlin; FERM, neurofibr 81.7 6.6 0.00023 32.4 8.5 73 6-81 21-99 (314)
158 2kl0_A Putative thiamin biosyn 81.5 3.3 0.00011 27.1 5.3 49 22-78 11-59 (73)
159 2q5w_D Molybdopterin convertin 80.9 4.5 0.00015 26.1 5.8 52 19-78 17-71 (77)
160 2kvr_A Ubiquitin carboxyl-term 80.5 1.4 4.7E-05 32.5 3.4 30 22-53 61-90 (130)
161 2i1j_A Moesin; FERM, coiled-co 80.2 7.3 0.00025 35.5 8.9 74 5-81 2-82 (575)
162 1ip9_A BEM1 protein; ubiquitin 79.9 7.7 0.00026 26.4 6.7 44 7-55 12-57 (85)
163 4eut_A Serine/threonine-protei 79.4 13 0.00043 31.4 9.7 67 10-78 313-384 (396)
164 2k5p_A THis protein, thiamine- 78.6 2.9 0.0001 27.8 4.3 60 8-78 1-63 (78)
165 1ify_A HHR23A, UV excision rep 78.1 0.74 2.5E-05 28.0 1.1 15 110-124 9-23 (49)
166 2f4m_B UV excision repair prot 78.1 0.58 2E-05 30.1 0.6 6 152-157 36-41 (61)
167 3qij_A Protein 4.1; cytoskelet 77.7 8.3 0.00028 31.8 7.8 70 7-78 17-93 (296)
168 2l52_A Methanosarcina acetivor 76.8 8.6 0.0003 26.4 6.5 68 8-78 4-93 (99)
169 1y8x_B Ubiquitin-activating en 76.7 4.1 0.00014 28.5 4.7 60 19-78 6-82 (98)
170 2ooa_A E3 ubiquitin-protein li 76.6 0.66 2.2E-05 28.7 0.5 15 110-124 12-26 (52)
171 2cu3_A Unknown function protei 76.5 6.3 0.00021 24.8 5.3 49 22-78 10-58 (64)
172 2d9s_A CBL E3 ubiquitin protei 76.3 0.8 2.7E-05 28.5 0.8 15 110-124 10-24 (53)
173 2qjl_A URM1, ubiquitin-related 74.9 17 0.00059 24.7 8.3 67 8-78 2-93 (99)
174 2kmm_A Guanosine-3',5'-BIS(dip 74.9 8.1 0.00028 24.5 5.7 62 8-79 1-62 (73)
175 3qa8_A MGC80376 protein; kinas 74.5 4.4 0.00015 37.8 5.7 64 16-81 320-393 (676)
176 2llv_A Heat shock protein STI1 74.5 0.48 1.6E-05 31.2 -0.6 46 135-187 16-62 (71)
177 2l9b_A MRNA 3'-END-processing 73.7 3 0.0001 29.8 3.4 31 144-178 58-88 (109)
178 1wgr_A Growth factor receptor- 73.7 16 0.00056 25.5 7.3 72 4-77 6-89 (100)
179 2dhz_A RAP guanine nucleotide 72.9 15 0.00051 26.6 7.0 75 2-78 4-90 (120)
180 1z96_A DNA-damage, UBA-domain 71.6 1.4 4.8E-05 25.0 1.1 15 110-124 5-19 (40)
181 1whc_A RSGI RUH-027, UBA/UBX 3 71.2 1.8 6.1E-05 27.8 1.6 15 110-124 10-24 (64)
182 2crn_A Ubash3A protein; compac 69.8 1.6 5.4E-05 28.1 1.1 15 110-124 10-24 (64)
183 2oo9_A E3 ubiquitin-protein li 69.1 1.3 4.3E-05 26.7 0.5 15 110-124 5-19 (46)
184 2ekk_A UBA domain from E3 ubiq 69.1 0.89 3E-05 27.2 -0.2 15 110-124 10-24 (47)
185 2c7h_A RBBP6, retinoblastoma-b 68.9 24 0.00083 23.9 7.5 41 9-51 8-51 (86)
186 1rws_A Hypothetical protein PF 68.8 2.5 8.6E-05 27.8 2.0 46 22-78 26-71 (77)
187 1wji_A Tudor domain containing 68.0 1.8 6.1E-05 27.8 1.1 15 110-124 10-24 (63)
188 1f2r_I Inhibitor of caspase-ac 65.6 16 0.00055 25.6 5.7 50 27-81 37-90 (100)
189 2jy5_A Ubiquilin-1; UBA, alter 65.5 4 0.00014 24.9 2.3 14 110-123 13-27 (52)
190 2dak_A Ubiquitin carboxyl-term 65.3 2.1 7.2E-05 27.3 1.0 15 110-124 10-24 (63)
191 1fm0_D Molybdopterin convertin 64.7 19 0.00064 23.2 5.8 50 24-78 23-75 (81)
192 2inc_C TOUB protein; DIIRON, 4 64.4 30 0.001 23.3 9.0 58 22-79 18-81 (83)
193 2g1e_A Hypothetical protein TA 63.7 21 0.00073 23.4 6.1 56 22-78 20-84 (90)
194 1eo6_A GATE-16, golgi-associat 62.9 38 0.0013 24.1 7.8 75 6-82 27-112 (117)
195 2ns5_A Partitioning-defective 61.8 18 0.00061 24.6 5.2 71 7-79 2-81 (85)
196 1dv0_A DNA repair protein HHR2 61.6 1.5 5.1E-05 26.4 -0.2 15 110-124 5-19 (47)
197 1veg_A NEDD8 ultimate buster-1 60.8 2.1 7.2E-05 29.1 0.4 15 110-124 30-44 (83)
198 2zjd_A Microtubule-associated 60.5 34 0.0012 24.9 7.0 74 6-81 34-120 (130)
199 3ge3_C Toluene-4-monooxygenase 60.4 36 0.0012 22.9 8.4 58 22-79 20-82 (84)
200 2dag_A Ubiquitin carboxyl-term 60.1 2.2 7.6E-05 28.2 0.4 15 110-124 10-24 (74)
201 2cpw_A CBL-interacting protein 59.4 1.8 6.3E-05 27.7 -0.1 15 110-124 20-34 (64)
202 4gdk_A Ubiquitin-like protein 59.2 34 0.0012 23.3 6.4 73 7-81 5-86 (91)
203 2knz_A Ubiquilin-4; cytoplasm, 59.0 3.3 0.00011 25.4 1.1 14 110-123 12-26 (53)
204 2eel_A Cell death activator CI 57.9 42 0.0014 23.0 7.9 68 8-81 10-79 (91)
205 1zoq_C CREB-binding protein, i 56.1 6 0.00021 23.6 1.8 20 145-164 20-39 (47)
206 1j0g_A Hypothetical protein 18 55.0 44 0.0015 22.5 6.1 59 22-82 29-88 (92)
207 1wiv_A UBP14, ubiquitin-specif 54.9 3 0.0001 27.5 0.4 15 110-124 30-44 (73)
208 3h9d_A ATG8, microtubule-assoc 54.7 29 0.00099 24.9 5.7 74 6-81 30-114 (119)
209 1vek_A UBP14, ubiquitin-specif 54.5 3.1 0.00011 28.2 0.4 15 110-124 30-44 (84)
210 2dai_A Ubadc1, ubiquitin assoc 53.5 3.3 0.00011 28.0 0.4 15 110-124 30-44 (83)
211 1vej_A Riken cDNA 4931431F19; 53.0 8.6 0.00029 25.4 2.4 13 110-122 30-42 (74)
212 3w1s_C Ubiquitin-like protein 52.7 52 0.0018 22.4 7.1 73 5-81 6-86 (91)
213 3m95_A Autophagy related prote 52.6 26 0.00089 25.4 5.2 75 6-82 35-120 (125)
214 1q02_A Sequestosome 1; helical 51.7 7.6 0.00026 23.9 1.8 15 110-124 11-25 (52)
215 1oqy_A HHR23A, UV excision rep 51.5 3.9 0.00013 35.3 0.6 34 140-177 255-290 (368)
216 3hvz_A Uncharacterized protein 51.3 49 0.0017 21.7 6.3 62 9-80 7-68 (78)
217 2r2q_A Gamma-aminobutyric acid 50.8 24 0.00084 24.8 4.7 73 6-80 26-109 (110)
218 2qsf_X RAD23, UV excision repa 50.1 11 0.00037 29.0 2.9 37 136-177 40-79 (171)
219 2ylm_A Ubiquitin carboxyl-term 49.5 11 0.00037 34.0 3.2 29 22-52 41-69 (530)
220 2dkl_A Trinucleotide repeat co 49.5 4.1 0.00014 27.7 0.4 15 110-124 22-36 (85)
221 1wz3_A Autophagy 12B, ATG12B, 48.9 55 0.0019 22.5 6.2 70 7-81 13-91 (96)
222 2bwb_A Ubiquitin-like protein 47.2 8.2 0.00028 22.9 1.4 13 110-122 8-20 (46)
223 2hj1_A Hypothetical protein; s 46.1 56 0.0019 22.4 5.9 56 18-78 26-83 (97)
224 2v1y_A Phosphatidylinositol-4, 45.1 36 0.0012 24.1 4.8 66 5-70 17-95 (108)
225 4eba_G RNA15, KLLA0F09383P; HA 40.1 14 0.00048 28.5 2.1 28 146-177 65-92 (174)
226 3rui_B Autophagy-related prote 39.6 1E+02 0.0034 21.9 7.6 74 6-81 29-113 (118)
227 2dah_A Ubiquilin-3; UBA domain 38.8 10 0.00035 23.3 0.9 14 110-123 10-23 (54)
228 2db0_A 253AA long hypothetical 38.0 29 0.001 27.6 3.6 30 162-194 131-160 (253)
229 3u52_E Phenol hydroxylase comp 37.8 1.1E+02 0.0038 21.9 7.2 59 20-78 40-107 (119)
230 3au4_A Myosin-X; protein-prote 37.8 46 0.0016 29.7 5.5 56 7-64 216-278 (555)
231 2ylm_A Ubiquitin carboxyl-term 37.5 19 0.00064 32.4 2.8 71 7-79 130-216 (530)
232 3hk0_A Growth factor receptor- 37.1 58 0.002 26.4 5.5 73 3-77 4-86 (256)
233 1v8c_A MOAD related protein; r 36.9 48 0.0016 25.1 4.7 54 22-78 19-81 (168)
234 4a6q_A Histone deacetylase com 36.5 36 0.0012 25.3 3.7 57 24-81 61-139 (143)
235 2cs4_A Protein C12ORF2; GTP bi 36.1 42 0.0014 23.2 3.8 72 6-81 6-86 (95)
236 2kmc_A Fermitin family homolog 36.1 1.1E+02 0.0037 21.3 9.0 71 7-79 19-98 (102)
237 1kbh_B CREB-binding protein, n 35.7 11 0.00036 23.6 0.6 11 165-175 32-42 (59)
238 3r8s_T 50S ribosomal protein L 35.6 69 0.0024 21.8 4.9 39 18-58 28-68 (93)
239 1q1o_A Cell division control p 34.8 52 0.0018 22.8 4.2 35 7-41 5-47 (98)
240 4b6x_A AVRRPS4, avirulence pro 34.7 35 0.0012 22.9 3.1 35 144-178 38-77 (90)
241 2cos_A Serine/threonine protei 34.3 5.5 0.00019 24.7 -0.9 15 110-124 10-24 (54)
242 2nnz_A Hypothetical protein; b 34.0 24 0.00081 26.5 2.5 33 2-35 24-60 (153)
243 3pvl_A Myosin VIIA isoform 1; 33.2 95 0.0033 28.6 6.9 46 7-53 263-309 (655)
244 2lbc_A Ubiquitin carboxyl-term 32.2 19 0.00066 25.7 1.7 15 110-124 4-18 (126)
245 2nvu_B Maltose binding protein 31.5 72 0.0025 29.8 5.9 57 22-78 717-789 (805)
246 1wgn_A UBAP1, ubiquitin associ 31.3 22 0.00074 22.7 1.6 15 110-124 20-34 (63)
247 1wr1_B Ubiquitin-like protein 30.7 15 0.00051 23.0 0.7 13 110-122 18-30 (58)
248 2lgx_A Fermitin family homolog 28.9 54 0.0019 23.2 3.4 69 7-78 26-100 (112)
249 2cu1_A Mitogen-activated prote 28.0 1.4E+02 0.0048 20.8 5.4 43 7-55 8-51 (103)
250 1ibx_B Chimera of IGG binding 27.0 50 0.0017 24.6 3.2 37 27-65 82-122 (145)
251 4ae4_A Ubiquitin-associated pr 26.9 21 0.00071 25.6 1.0 15 110-124 9-23 (118)
252 3tve_T 50S ribosomal protein L 26.4 95 0.0033 21.1 4.3 38 18-57 22-61 (92)
253 3le1_A Phosphotransferase syst 26.1 83 0.0028 20.9 4.0 36 47-82 31-68 (88)
254 2zjr_Q 50S ribosomal protein L 23.2 93 0.0032 21.3 3.8 37 19-57 24-62 (95)
255 3iqt_A Signal transduction his 22.8 39 0.0013 24.0 1.9 32 146-177 19-50 (123)
256 3k9o_A Ubiquitin-conjugating e 22.8 27 0.00093 27.1 1.1 15 110-124 164-178 (201)
257 2k7r_A Primosomal protein DNAI 22.3 47 0.0016 22.9 2.2 40 145-189 22-63 (106)
258 1pqs_A Cell division control p 22.1 61 0.0021 21.3 2.5 35 19-55 3-43 (77)
259 2y5c_A Adrenodoxin-like protei 21.8 89 0.0031 21.2 3.6 30 4-33 2-32 (109)
260 2i1s_A Hypothetical protein; m 20.9 2E+02 0.0067 21.7 5.7 40 8-49 9-52 (188)
261 3myf_A Sensor protein; HPT, hi 20.8 46 0.0016 23.4 1.9 32 146-177 10-41 (119)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=100.00 E-value=4e-40 Score=288.94 Aligned_cols=186 Identities=44% Similarity=0.690 Sum_probs=146.7
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHh---hhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQS---EKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~---~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
..|+|+||+.+|++|. +|++++||.+||++|+. +.| +++++|||||+||+|+|+++|++|+|++|++|++++.|
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~g--ip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k 83 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA--FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSS--CCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEEC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCC--CChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEec
Confidence 4699999999999999 99999999999999999 566 99999999999999999999999999999999667666
Q ss_pred CCCCCC-CC--C-----CC----------C-CCCCC-C-C-------------CCCC--C--------C------CC---
Q psy4259 82 PKPTPA-PY--S-----GP----------S-DPTQP-A-G-------------QESE--A--------T------RP--- 108 (203)
Q Consensus 82 ~~~~~~-p~--~-----~~----------~-~p~~~-p-~-------------~~~~--~--------~------~~--- 108 (203)
.+..++ ++ + ++ + .|+++ + + +.++ + . .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~l~ 163 (368)
T 1oqy_A 84 TKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLV 163 (368)
T ss_dssp CCSSSCCCCCSSCCCCCSSSCCCSCCCSSSCCCCCCCSSSSCCCCCSCSCCCCSSTTCSCCCSCSCCCSCCCCCCCTTTC
T ss_pred CCCCCCCCCCcccCCCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCCCccccccccccccccccccccccc
Confidence 543211 10 0 00 0 00000 0 0 0000 0 0 01
Q ss_pred ----chhhHHHHHhCCcCCC-----------CCC--------------------------------CCCCCChHHHhhCC
Q psy4259 109 ----ATATSDSMLKVFFERV-----------NPY--------------------------------GGESEDPLAFLRTQ 141 (203)
Q Consensus 109 ----~~~~v~~~~~mG~~~~-----------np~--------------------------------~~~~~~pl~~l~~~ 141 (203)
.++.|++|++|||+|+ |+. ++...+++++||++
T Consensus 164 ~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~ 243 (368)
T 1oqy_A 164 TGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQ 243 (368)
T ss_dssp CTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTTHHHHHS
T ss_pred CCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccCCccccccccccCccccccchHHHHhcC
Confidence 1578999999999998 331 01234679999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhhCHHHHHHHHcCCccc
Q psy4259 142 PQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193 (203)
Q Consensus 142 P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~n~~~f~~ml~~p~~~ 193 (203)
|+|++||++|++||++|++|||+|+++||+|+++|++||++|++||++|.++
T Consensus 244 pqf~~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~~n~~~Fl~~l~e~~~~ 295 (368)
T 1oqy_A 244 PQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGE 295 (368)
T ss_dssp HHHHHHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred hHHHHHHHHHHhChHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHcCcccc
Confidence 9999999999999999999999999999999999999999999999998653
No 2
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.8e-21 Score=141.66 Aligned_cols=77 Identities=27% Similarity=0.395 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCCCCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~~~~ 86 (203)
|+|+||+++|+.|. +|++++||.+||++|+..+| +|+++|||+|+||.|+|+++|++|||++|++|+++++++++++
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~~~~ 79 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSIS--CEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKKSTK 79 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTT--SCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-----
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--CChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCCCCC
Confidence 78999999999999 99999999999999999999 9999999999999999999999999999999999998876544
No 3
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.83 E-value=1.9e-20 Score=132.75 Aligned_cols=78 Identities=32% Similarity=0.477 Sum_probs=72.0
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
+..|+|+||+.+|+++. +|++++||.+||++|+..++ +++++|||+|+||.|+|+++|++|+| +|++||++++.+.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--ip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC--CCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 45799999999999999 99999999999999999999 99999999999999999999999999 8999999887655
Q ss_pred CC
Q psy4259 84 PT 85 (203)
Q Consensus 84 ~~ 85 (203)
.+
T Consensus 80 ~~ 81 (90)
T 4dwf_A 80 QT 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 4
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.82 E-value=2.3e-20 Score=135.06 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=70.1
Q ss_pred CCCcceEEEEEeCCCCeee---ecCCCCcHHHHHHHH-HhhhCCCCCCCceEEEeCCeecCCCCCcccccc-CCCCEEEE
Q psy4259 3 MLAHDISDITQNQWQQTVS---HLDVQEEVKQLKEKI-QSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVV 77 (203)
Q Consensus 3 ~~~~~m~I~Vk~~~g~~~~---~v~~~~TV~~LK~~I-~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI-~~~~~i~v 77 (203)
+.+..|+|+||++.|++|. +|++++||.+||++| +...| +|+++|||||+||.|+|+.+|++|+| ++|++|++
T Consensus 15 ~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g--ip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~l 92 (98)
T 4a20_A 15 MDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA--SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITV 92 (98)
T ss_dssp ---CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC--SCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC--CChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEE
Confidence 3456899999999999877 456999999999999 88888 99999999999999999999999999 99999999
Q ss_pred EeecC
Q psy4259 78 MLSKP 82 (203)
Q Consensus 78 ~~~k~ 82 (203)
++++|
T Consensus 93 mvskp 97 (98)
T 4a20_A 93 MIKPN 97 (98)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 99875
No 5
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=7.9e-20 Score=131.19 Aligned_cols=77 Identities=52% Similarity=0.736 Sum_probs=72.2
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhh---hCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSE---KGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~---~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
|+|+||+..|+.+. +|++++||.+||++|+.. .| +|+++|||+|+||.|+|+++|++|||++|++|+++++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDA--FPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTT--CCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCC--CChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 79999999999999 999999999999999999 67 9999999999999999999999999999999999998776
Q ss_pred CCC
Q psy4259 84 PTP 86 (203)
Q Consensus 84 ~~~ 86 (203)
+.+
T Consensus 79 ~~~ 81 (95)
T 1uel_A 79 AVS 81 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=127.01 Aligned_cols=74 Identities=20% Similarity=0.344 Sum_probs=70.9
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+.+|+|+||+.+|+++. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|+++++
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG--VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcC--CCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 45799999999999999 99999999999999999999 9999999999999999999999999999999999875
No 7
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=99.82 E-value=5e-21 Score=129.65 Aligned_cols=63 Identities=63% Similarity=1.020 Sum_probs=60.2
Q ss_pred CChHHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhhCHHHHHHHHcCCcccc
Q psy4259 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194 (203)
Q Consensus 132 ~~pl~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~n~~~f~~ml~~p~~~~ 194 (203)
.+++++|+++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||++|.+++
T Consensus 3 ~~~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~~~ 65 (72)
T 1pve_A 3 HMPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEA 65 (72)
T ss_dssp TCTTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHSCSCCG
T ss_pred CchHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcCCccCC
Confidence 567899999999999999999999999999999999999999999999999999999998765
No 8
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.81 E-value=1.3e-19 Score=126.85 Aligned_cols=77 Identities=45% Similarity=0.656 Sum_probs=70.3
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhh---hCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSE---KGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~---~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+..|+|+||+.+|+.+. +|++++||.+||++|+.. .| +|+++|||+|+|+.|+|+++|++|||++|++||++++
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDA--FPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTT--CCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccC--CCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEc
Confidence 35799999999999999 999999999999999998 67 9999999999999999999999999999999999987
Q ss_pred cCC
Q psy4259 81 KPK 83 (203)
Q Consensus 81 k~~ 83 (203)
+++
T Consensus 81 ~~~ 83 (85)
T 2wyq_A 81 KTK 83 (85)
T ss_dssp ---
T ss_pred CCC
Confidence 765
No 9
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=99.81 E-value=6.8e-20 Score=120.53 Aligned_cols=59 Identities=68% Similarity=1.113 Sum_probs=56.9
Q ss_pred ChHHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhhCHHHHHHHHcCCc
Q psy4259 133 DPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191 (203)
Q Consensus 133 ~pl~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~n~~~f~~ml~~p~ 191 (203)
+++++|+++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||++|.
T Consensus 2 ~~l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~~n~e~Fl~ll~e~~ 60 (61)
T 2f4m_B 2 HPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 60 (61)
T ss_dssp CGGGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHHHSHHHHHHHHTSCC
T ss_pred chHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHHHCHHHHHHHHcccC
Confidence 56899999999999999999999999999999999999999999999999999999885
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.81 E-value=1.3e-19 Score=129.18 Aligned_cols=73 Identities=16% Similarity=0.274 Sum_probs=69.3
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEe
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
++.|+|+||+..|+++. +|++++||++||++|+++.| +|+++|||+|+|++|+|+.||++|+|++|++|++..
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~G--ip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIG--TQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhC--CCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 35699999999999999 99999999999999999999 999999999999999999999999999999999853
No 11
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.80 E-value=3.4e-19 Score=126.71 Aligned_cols=74 Identities=26% Similarity=0.469 Sum_probs=71.0
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
...|+|+||+.+|+.+. +|++++||.+||++|+..+| +|+++|||+|+|+.|+|+++|++|||++|++|+++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC--CChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 34799999999999999 99999999999999999999 9999999999999999999999999999999999875
No 12
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.79 E-value=4.2e-19 Score=125.64 Aligned_cols=74 Identities=19% Similarity=0.417 Sum_probs=70.6
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
|+|+||+++|++|. +|++++||.+||++|+..+| +|+++|||+|+|+.|+|+++|++|+|++|++|+++++-+.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~G 75 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG--IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC-
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC--cChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 78999999999999 99999999999999999999 9999999999999999999999999999999999987654
No 13
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.79 E-value=2.3e-19 Score=126.16 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=70.0
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCee-cCCCCCccccccCCCCEEEEEee
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKI-LSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~-L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+-|+|+||++.|+.+. +|++++||.+||++|+...| +|+++|||+|+|+. |+|+++|++|+|++|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQH--IPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHT--CCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHC--cChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 3599999999999999 99999999999999999999 99999999999999 99999999999999999999864
No 14
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.3e-19 Score=128.32 Aligned_cols=73 Identities=23% Similarity=0.311 Sum_probs=68.3
Q ss_pred eEEEEEeCCCCeee-ecC--CCCcHHHHHHHH-HhhhCCCCCCCceEEEeCCeecCCCCCcccccc-CCCCEEEEEeecC
Q psy4259 8 ISDITQNQWQQTVS-HLD--VQEEVKQLKEKI-QSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVMLSKP 82 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~--~~~TV~~LK~~I-~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI-~~~~~i~v~~~k~ 82 (203)
|+|+||+.+|++|. +|+ +++||.+||++| +...| +|+++|||||+||+|+|+.+|++|+| .+|++|+|++++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA--SHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC--SSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC--CChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 89999999999998 755 999999999999 99999 99999999999999999999999999 6999999998653
No 15
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.6e-19 Score=130.32 Aligned_cols=78 Identities=15% Similarity=0.276 Sum_probs=73.5
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~~ 84 (203)
..|+|+||+..|+.+. +|++++||.+||.+|+...| +++++|||+|+|+.|+|+++|++|||++|++|||+++++..
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEG--VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTC--CCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHC--cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3599999999999999 99999999999999999999 99999999999999999999999999999999999887665
Q ss_pred C
Q psy4259 85 T 85 (203)
Q Consensus 85 ~ 85 (203)
.
T Consensus 100 ~ 100 (106)
T 1ttn_A 100 N 100 (106)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=125.03 Aligned_cols=73 Identities=32% Similarity=0.469 Sum_probs=69.3
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+..|+|+||+.+|+.+. +|++++||.+||++|+..+| +|+++|||+|+||.|+|+++|++||| +|++||++.+
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVS--IPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhC--CCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 45699999999999999 99999999999999999999 99999999999999999999999999 8999998864
No 17
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=8.8e-19 Score=120.68 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=69.5
Q ss_pred ceEEEEEeCCCCee-e-e-cCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 7 DISDITQNQWQQTV-S-H-LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~-~-~-v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
.|+|+||+..|+.+ . + |++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|||++|++||++++.
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~g--ip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFH--VEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHC--cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 69999999999985 7 8 9999999999999999999 99999999999999999999999999999999998764
No 18
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=7.5e-19 Score=123.55 Aligned_cols=75 Identities=19% Similarity=0.413 Sum_probs=71.3
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
...|+|+||+.+|+.+. +|++++||.+||++|+..++ +|+++|||+|+|+.|+|+++|++|+|+++++|+++++-
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG--IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC--cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 34699999999999999 99999999999999999999 99999999999999999999999999999999998764
No 19
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=1.3e-18 Score=124.64 Aligned_cols=76 Identities=25% Similarity=0.258 Sum_probs=69.6
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCC-CCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD-QALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~-~tL~~~gI~~~~~i~v~~~k~ 82 (203)
...|+|+||+..|+.+. +|++++||.+||++|+... +++|||+|+||.|+|+ ++|++|+|++|++|||+++++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~-----~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ-----ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST-----TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC-----cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 34699999999999999 9999999999999998875 7899999999999999 999999999999999998876
Q ss_pred CCC
Q psy4259 83 KPT 85 (203)
Q Consensus 83 ~~~ 85 (203)
..+
T Consensus 80 ~~~ 82 (95)
T 1wia_A 80 GAA 82 (95)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 20
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=1.4e-18 Score=124.28 Aligned_cols=74 Identities=27% Similarity=0.481 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
|+|+||+.+|+.+. +|++++||.+||++|+..++ +|+++|||+|+|+.|+|+++|++|+|++|++|+++++-..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~g--ip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhC--CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 89999999999999 99999999999999999999 9999999999999999999999999999999999987654
No 21
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=3.9e-19 Score=128.72 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=68.4
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEe
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
.|+|+||++.|+++. +|++++||.+||++|+++.| +|+++|||||.||+|+|+.||++|+|+++++|++..
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~G--ip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTG--TRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHC--CCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhC--CCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 499999999999999 99999999999999999999 999999999999999999999999999999999864
No 22
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=120.80 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=71.0
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
+..|+|+||+.+|+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|||++|++|+++++.
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~--i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLN--VPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTC--CCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--cCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 45799999999999999 99999999999999999999 99999999999999999999999999999999998753
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.7e-19 Score=126.16 Aligned_cols=75 Identities=27% Similarity=0.480 Sum_probs=71.0
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
..|+|+||+++|+.|. +|++++||.+||++|+..++ +|+++|||+|+||.|+|+++|++|+|++|++|+++++-.
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~ 96 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 96 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCS
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhC--CChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecC
Confidence 4699999999999999 99999999999999999999 999999999999999999999999999999999987643
No 24
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.9e-18 Score=126.35 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=70.3
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~~ 84 (203)
..|+|+||+..|+ +. +|++++||.+||++|+..++ +++++|||+|+||.|+|+++|++|+|++|++|||+++.+..
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK--AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHT--CCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHC--cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4599999998886 78 99999999999999999999 99999999999999999999999999999999999876543
No 25
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.2e-18 Score=121.69 Aligned_cols=76 Identities=26% Similarity=0.478 Sum_probs=70.5
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
++|+|+||+.+|+.+. +|++++||.+||++|++.++ +|+++|||+|+|+.|+|+++|++|+|+++++|+++++-..
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~G 78 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRG 78 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC-
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--CCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccC
Confidence 4799999999999999 99999999999999999999 9999999999999999999999999999999999986543
No 26
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=1.4e-18 Score=126.26 Aligned_cols=78 Identities=18% Similarity=0.300 Sum_probs=70.2
Q ss_pred CcceEEEEEeCCC----Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCC-CCccccccCCCCEEEEE
Q psy4259 5 AHDISDITQNQWQ----QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD-QALSEYNIDESKFIVVM 78 (203)
Q Consensus 5 ~~~m~I~Vk~~~g----~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~-~tL~~~gI~~~~~i~v~ 78 (203)
+..|+|+||+..+ +.|. +|++++||.+||++|+..+| +++++|||+|+||.|+|+ ++|++|+|++|++|||+
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~g--ip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~ 82 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESG--VPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLL 82 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTC--CCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHC--cChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEE
Confidence 3469999999754 6888 99999999999999999999 999999999999999988 79999999999999998
Q ss_pred eecCCC
Q psy4259 79 LSKPKP 84 (203)
Q Consensus 79 ~~k~~~ 84 (203)
.+.+..
T Consensus 83 ~~~~gg 88 (102)
T 1v5o_A 83 QKDNVG 88 (102)
T ss_dssp BCCCCC
T ss_pred ECCCCC
Confidence 766543
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.77 E-value=2.1e-18 Score=117.61 Aligned_cols=72 Identities=19% Similarity=0.438 Sum_probs=69.3
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
|+|+||+.+|+.+. +|++++||.+||++|+...+ +|+++|+|+|+|+.|+|+++|++|||++|++|+++++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG--IPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC--cChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999 99999999999999999999 99999999999999999999999999999999998764
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.77 E-value=8.1e-19 Score=124.12 Aligned_cols=76 Identities=20% Similarity=0.318 Sum_probs=70.5
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
..|+|+||+..|+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|+++++...
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g--ip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~g 79 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG--VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTC--SCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC---
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhC--CChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCC
Confidence 4799999999999999 99999999999999999999 9999999999999999999999999999999999886543
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.9e-18 Score=120.45 Aligned_cols=75 Identities=27% Similarity=0.479 Sum_probs=71.1
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
++|+|+||+.+|+.+. +|++++||.+||++|++.++ +|+++|||+|+|+.|+|+++|++|+|+++++|+++++-.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHC--cChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECc
Confidence 4799999999999999 99999999999999999999 999999999999999999999999999999999987654
No 30
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=124.92 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=69.0
Q ss_pred CcceEEEEEeCCCCee-e-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTV-S-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~-~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
...|+|+|| +.|+.| . +|++++||.+||++|+..+| +|+++|||+|+||.|+|+ +|++|+|++|++|+++++..
T Consensus 5 ~~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tg--ip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 5 SSGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTG--VQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CCEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTC--CCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred CcEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHC--cCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 356999999 578999 7 99999999999999999999 999999999999999999 99999999999999987655
Q ss_pred C
Q psy4259 83 K 83 (203)
Q Consensus 83 ~ 83 (203)
.
T Consensus 81 ~ 81 (96)
T 1wgg_A 81 A 81 (96)
T ss_dssp C
T ss_pred h
Confidence 3
No 31
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.6e-18 Score=125.65 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 2 GMLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
...+..|+|+||+..|+ +. +|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|++|++|+|+++
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r 93 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFK--AHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIK 93 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEEC
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHC--cChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEc
Confidence 34566799999999886 78 99999999999999999999 9999999999999999999999999999999999887
Q ss_pred cCC
Q psy4259 81 KPK 83 (203)
Q Consensus 81 k~~ 83 (203)
.+.
T Consensus 94 ~~~ 96 (100)
T 1yqb_A 94 RQH 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 32
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.8e-18 Score=123.49 Aligned_cols=76 Identities=21% Similarity=0.275 Sum_probs=69.4
Q ss_pred cceEEEEEeCCCC--eee-ecCCCCcHHHHHHHHHhhh--CCCCCCCceEEEeCCeecCCCCCcccc--ccCCCCEEEEE
Q psy4259 6 HDISDITQNQWQQ--TVS-HLDVQEEVKQLKEKIQSEK--GSEYLAEYQKLIYAGKILSDDQALSEY--NIDESKFIVVM 78 (203)
Q Consensus 6 ~~m~I~Vk~~~g~--~~~-~v~~~~TV~~LK~~I~~~~--~~~ip~~~qkLi~~Gk~L~D~~tL~~~--gI~~~~~i~v~ 78 (203)
..|+|+||+.+++ .+. +|++++||.+||++|+..+ + +++++|||||+||.|+|+++|++| +|+++++||++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~--i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv 83 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPER--PRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLV 83 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTC--CCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCC--CChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEE
Confidence 4699999999988 566 7779999999999999998 8 999999999999999999999999 99999999998
Q ss_pred eecCC
Q psy4259 79 LSKPK 83 (203)
Q Consensus 79 ~~k~~ 83 (203)
++.+.
T Consensus 84 ~~~~g 88 (93)
T 1wgd_A 84 CNVKS 88 (93)
T ss_dssp CCCCC
T ss_pred eCCCC
Confidence 76544
No 33
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.76 E-value=3.5e-18 Score=116.47 Aligned_cols=72 Identities=28% Similarity=0.499 Sum_probs=69.2
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
|+|+||+.+|+.+. +|++++||.+||++|+..++ +|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHC--cCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 78999999999999 99999999999999999999 99999999999999999999999999999999998764
No 34
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.6e-18 Score=120.72 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=73.0
Q ss_pred CCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 4 LAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 4 ~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
.+..|+|+||+.+|+.+. +|++++||.+||++|+...+ +|+++|+|+|+|+.|+|+++|++|+|+++++|+++++..
T Consensus 4 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--i~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 4 GSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQG--LPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp CSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTC--CCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSC
T ss_pred CCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhC--CChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEecc
Confidence 456799999999999999 99999999999999999999 999999999999999999999999999999999988654
Q ss_pred C
Q psy4259 83 K 83 (203)
Q Consensus 83 ~ 83 (203)
.
T Consensus 82 G 82 (87)
T 1wh3_A 82 S 82 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.76 E-value=3.5e-18 Score=117.07 Aligned_cols=71 Identities=30% Similarity=0.446 Sum_probs=67.5
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
.|+|+||+ .|+.+. +|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||++|++|+++.+
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~--i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhC--CCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 38999999 899999 99999999999999999999 9999999999999999999999999999999998764
No 36
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.5e-18 Score=125.62 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=65.2
Q ss_pred EEEEEeCC----CCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 9 SDITQNQW----QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 9 ~I~Vk~~~----g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
.|.|+..+ ++++. +|++++||.+||++|+.+.| +|+++|||||+||+|+|++||++|+|++|++|+|++.+..
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~g--ip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFG--LQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTT--CCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHC--cCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECCC
Confidence 45566665 77899 99999999999999999999 9999999999999999999999999999999977765543
No 37
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=2.6e-18 Score=125.91 Aligned_cols=80 Identities=25% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCCcceEEEEEeCCC---Ceee-ec--------CC-CCcHHHHHHHHHhhh--CCCCCCCc-eEEEeCCeecCCCCCcc
Q psy4259 2 GMLAHDISDITQNQWQ---QTVS-HL--------DV-QEEVKQLKEKIQSEK--GSEYLAEY-QKLIYAGKILSDDQALS 65 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~g---~~~~-~v--------~~-~~TV~~LK~~I~~~~--~~~ip~~~-qkLi~~Gk~L~D~~tL~ 65 (203)
+|....|+|+||+.++ ++|. +| ++ ++||.+||++|+... + +++++ |||||+||.|+|+++|+
T Consensus 7 ~~~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~g--ip~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 7 GMSLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQES--VPDPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CCCCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTT--CCCSSSEEEEETTEECCTTCBHH
T ss_pred CccCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccC--CChhhcEEEEECCeECCCCCcHH
Confidence 5677789999999998 7888 84 44 499999999999999 8 99999 99999999999999999
Q ss_pred ccccCCCCEEEEEeecCC
Q psy4259 66 EYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 66 ~~gI~~~~~i~v~~~k~~ 83 (203)
+|+|++|++||++++.+.
T Consensus 85 ~y~i~~g~~i~lv~~~~~ 102 (107)
T 1x1m_A 85 FYGIQPGSTVHVLRKSWS 102 (107)
T ss_dssp HHTCCTTCEEEEEESSCC
T ss_pred HcCCCCCCEEEEEeCCCC
Confidence 999999999999886543
No 38
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.2e-18 Score=120.22 Aligned_cols=77 Identities=17% Similarity=0.286 Sum_probs=71.6
Q ss_pred CcceEEEEEeCCC-Ceee-e-cCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 5 AHDISDITQNQWQ-QTVS-H-LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 5 ~~~m~I~Vk~~~g-~~~~-~-v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
+..|+|+||+..| +.+. + |++++||.+||++|+...+ +|+++|||+|+|+.|+|+++|++|+|+++++||++++.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~g--ip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFD--VRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSC--CCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHC--cChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 3579999999999 6888 7 9999999999999999999 99999999999999999999999999999999998865
Q ss_pred CC
Q psy4259 82 PK 83 (203)
Q Consensus 82 ~~ 83 (203)
..
T Consensus 83 ~g 84 (89)
T 1wy8_A 83 DS 84 (89)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 39
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4e-18 Score=120.57 Aligned_cols=74 Identities=28% Similarity=0.485 Sum_probs=68.7
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
.|+|+||+++|+.+. +|++++||.+||++|++..+ +|+++|||+|+|+.|+|+++|++|+|++|++|+++++..
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~ 83 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 83 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHC--CCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC---
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHC--cChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 589999999999999 99999999999999999999 999999999999999999999999999999999987644
No 40
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=2.2e-18 Score=119.06 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=71.3
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
+.|+|+||+.+|+.+. +|++++||.+||++|+.+.| +|+++|||+|+|+.|+|++||++|+|++|++|+++++..
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~g--i~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~ 77 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG--VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 77 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT--CCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHC--CCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEecc
Confidence 3699999999999999 99999999999999999999 999999999999999999999999999999999987643
No 41
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=122.50 Aligned_cols=76 Identities=21% Similarity=0.306 Sum_probs=70.9
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
+..|+|+||+. |+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|||++|++|+|+++.+.
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFK--SHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHT--CCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHC--cChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 35799999998 88899 99999999999999999999 9999999999999999999999999999999999886543
No 42
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.75 E-value=5.9e-18 Score=127.48 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=69.8
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
+..|+|+||+. |+.+. +|++++||.+||++|+..++ +++++|||+|+||.|+|+++|++|+|++|++|+|+++...
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFK--SQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHC--SCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC---
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHC--cCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCC
Confidence 45799999998 89999 99999999999999999999 9999999999999999999999999999999999887654
No 43
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=4.8e-18 Score=121.80 Aligned_cols=76 Identities=30% Similarity=0.374 Sum_probs=71.0
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCC-CCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDD-QALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~-~tL~~~gI~~~~~i~v~~~k~ 82 (203)
...|+|+||+..| ++. +|++++||.+||++|+...| +|+++|||+|+||.|+|+ ++|++|+|++|++|+|+++.+
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVEN--TPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSS--SCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHC--cCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 4579999999888 888 99999999999999999999 999999999999999999 999999999999999988765
Q ss_pred C
Q psy4259 83 K 83 (203)
Q Consensus 83 ~ 83 (203)
.
T Consensus 90 g 90 (94)
T 2kan_A 90 N 90 (94)
T ss_dssp S
T ss_pred C
Confidence 4
No 44
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=5.6e-18 Score=122.01 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=71.3
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
..|+|+||+.+|+.+. +|.+++||.+||++|+.+.| +|+++|||+|+|+.|+|++||++|+|++|++|+++++..
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~g--ip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~ 95 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG--VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQT 95 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHT--CCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSS
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--CChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecC
Confidence 3599999999999999 99999999999999999999 999999999999999999999999999999999988643
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=3.2e-18 Score=122.71 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=70.4
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
..|+|+||+. |+.+. +|++++||.+||++|+...+ +++++|||+|+|+.|+|+++|++|+|++|++||++++...
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~g--ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLH--CNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTC--SCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhC--CCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCC
Confidence 4699999998 89999 99999999999999999999 9999999999999999999999999999999999876554
No 46
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=123.34 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=70.8
Q ss_pred CcceEEEEE-eCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQ-NQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk-~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
.+.+.|+|+ ...+..++ +++++.||++||++++...+ +|+++|+|||+||+|+|+.||++|||++|++||++++..
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~--iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLG--IPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHT--CCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhC--CChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 446888887 55688899 99999999999999999999 999999999999999999999999999999999998775
Q ss_pred CC
Q psy4259 83 KP 84 (203)
Q Consensus 83 ~~ 84 (203)
.+
T Consensus 91 ~p 92 (118)
T 2daf_A 91 NP 92 (118)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 47
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.73 E-value=1.2e-17 Score=123.12 Aligned_cols=73 Identities=27% Similarity=0.495 Sum_probs=70.6
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
.|+|+||+++|+.|. +|++++||.+||.+|+..++ +|+++|||+|+||.|+|+++|++|+|+++++|+++++-
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECC
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC--CChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 699999999999999 99999999999999999999 99999999999999999999999999999999998864
No 48
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=1.7e-17 Score=119.42 Aligned_cols=74 Identities=27% Similarity=0.481 Sum_probs=70.5
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
|+|+||+.+|+.+. +|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||++|++|+++++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~g--i~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~g 75 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTC--CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCC
Confidence 79999999999999 99999999999999999999 9999999999999999999999999999999999887653
No 49
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.2e-18 Score=123.69 Aligned_cols=72 Identities=29% Similarity=0.447 Sum_probs=67.4
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
.|+|+||+ .|+.+. +|++++||.+||++|+..+| +|+++|||+|+|+.|+|+++|++|||++|++|+++++.
T Consensus 28 ~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 28 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp -CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHS--CCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHC--cChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 47888997 889999 99999999999999999999 99999999999999999999999999999999998764
No 50
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=121.77 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=72.2
Q ss_pred CCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 4 LAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 4 ~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
....|+|+||+.+|+.+. +|++++||.+||++|+...+ +++++|||+|+||.|+|+++|++|+|++|++|+++++-.
T Consensus 32 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~ 109 (111)
T 2ojr_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 109 (111)
T ss_dssp GSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHC--CCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHC--cCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 345799999999999999 99999999999999999999 999999999999999999999999999999999987643
No 51
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=3.4e-17 Score=121.66 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCC----C--CCCceEEEeCCeecCCCCCccccccCCCC--EE
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSE----Y--LAEYQKLIYAGKILSDDQALSEYNIDESK--FI 75 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~----i--p~~~qkLi~~Gk~L~D~~tL~~~gI~~~~--~i 75 (203)
.+.|.|+||++.|++++ +|++++||.+||++|+..++.+ + ++++|||||+||+|+|+.||++|+|+.++ +|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 35699999999999999 9999999999999999954321 3 69999999999999999999999998775 56
Q ss_pred EEEeecC
Q psy4259 76 VVMLSKP 82 (203)
Q Consensus 76 ~v~~~k~ 82 (203)
|++++-.
T Consensus 94 hLvlr~~ 100 (116)
T 1wgh_A 94 HLVARET 100 (116)
T ss_dssp EEEECSS
T ss_pred EEEccCC
Confidence 6665443
No 52
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=4.2e-18 Score=124.45 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=69.2
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCC---------------CceEEEeCCeecC-CCCCcccc
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLA---------------EYQKLIYAGKILS-DDQALSEY 67 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~---------------~~qkLi~~Gk~L~-D~~tL~~~ 67 (203)
...|+|+||+++|++|. +|++++||.+||++|+.+.+ +++ ++|+|||+||.|. |++||++|
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~--i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dy 82 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQ--LKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDY 82 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHH--HHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHH
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhC--CCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHc
Confidence 34699999999999999 99999999999999999998 777 4579999999997 56999999
Q ss_pred ccCCCCEEEEEeecCC
Q psy4259 68 NIDESKFIVVMLSKPK 83 (203)
Q Consensus 68 gI~~~~~i~v~~~k~~ 83 (203)
||++|++|||+.+-+.
T Consensus 83 gI~~g~~l~lv~~lr~ 98 (105)
T 1v2y_A 83 GIRNRDEVSFIKKLGQ 98 (105)
T ss_dssp TCCSSEEEEEEECSCS
T ss_pred CCCCCCEEEEEehhcc
Confidence 9999999999876543
No 53
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=1e-17 Score=119.69 Aligned_cols=73 Identities=22% Similarity=0.264 Sum_probs=67.1
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
...|+|+||+ |+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|+++++-
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEG--IAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHT--CCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhC--cChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEec
Confidence 4569999997 88999 99999999999999999999 99999999999999999999999999999999998754
No 54
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=99.72 E-value=2.3e-18 Score=135.32 Aligned_cols=63 Identities=37% Similarity=0.489 Sum_probs=53.9
Q ss_pred CCChHHHhh-CCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhhCHHHHHHHHcCCccc
Q psy4259 131 SEDPLAFLR-TQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193 (203)
Q Consensus 131 ~~~pl~~l~-~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~n~~~f~~ml~~p~~~ 193 (203)
..+++++|| ++|+|++||++|++||++|+++|++|+++||+|+++|++||++|++||++|.++
T Consensus 21 ~~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~qNqe~Fl~mLnep~~~ 84 (171)
T 2qsf_X 21 QGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGD 84 (171)
T ss_dssp -------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHHHCHHHHHHHHHHCCC-
T ss_pred ccCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHHHCHHHHHHHHhCcccc
Confidence 456799999 999999999999999999999999999999999999999999999999998664
No 55
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.72 E-value=6.6e-18 Score=122.31 Aligned_cols=74 Identities=22% Similarity=0.329 Sum_probs=64.0
Q ss_pred CCcceEEEEEeCCCC--eee-ecCCCCcHHHHHHHHHhhh-CCCCCCCceEEEeCCeecCCCCCcccc--ccCCCCEEEE
Q psy4259 4 LAHDISDITQNQWQQ--TVS-HLDVQEEVKQLKEKIQSEK-GSEYLAEYQKLIYAGKILSDDQALSEY--NIDESKFIVV 77 (203)
Q Consensus 4 ~~~~m~I~Vk~~~g~--~~~-~v~~~~TV~~LK~~I~~~~-~~~ip~~~qkLi~~Gk~L~D~~tL~~~--gI~~~~~i~v 77 (203)
....|+|+||+.+|+ .+. +|++++||.+||++|+.++ |. +++++|||||+||+|+|+++|++| +|+++++|++
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~-pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSK-PLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTC-CCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCC-CChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 345799999999998 567 9999999999999999975 41 456999999999999999999999 9999999997
Q ss_pred E
Q psy4259 78 M 78 (203)
Q Consensus 78 ~ 78 (203)
+
T Consensus 99 v 99 (99)
T 2kdb_A 99 V 99 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.7e-17 Score=116.99 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=68.4
Q ss_pred CcceEEEEEeCCCCeee-ecCCC-----CcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCC-CCCccccccCCCCEEEE
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQ-----EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD-DQALSEYNIDESKFIVV 77 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~-----~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D-~~tL~~~gI~~~~~i~v 77 (203)
+..|+|+||+ .|+.+. +|+++ +||.+||++|+..+| +|+++|||+|+||.|+| +++|++|+|++|++|||
T Consensus 5 ~~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~g--ip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l 81 (92)
T 1wxv_A 5 SSGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIG--VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 81 (92)
T ss_dssp CSSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTC--CCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEE
T ss_pred CCeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHC--cCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEE
Confidence 3469999997 588889 99985 999999999999999 99999999999999998 56899999999999999
Q ss_pred EeecCC
Q psy4259 78 MLSKPK 83 (203)
Q Consensus 78 ~~~k~~ 83 (203)
+.+++.
T Consensus 82 ~~~~~~ 87 (92)
T 1wxv_A 82 IGKKNS 87 (92)
T ss_dssp ESCCSC
T ss_pred EecCCC
Confidence 876544
No 57
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.55 E-value=5.3e-19 Score=121.13 Aligned_cols=72 Identities=17% Similarity=0.321 Sum_probs=69.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
|+|+||+.+|+.+. +|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|||++|++|+++++-
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQG--VPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 78999999999999 99999999999999999999 99999999999999999999999999999999998754
No 58
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.71 E-value=3.4e-17 Score=123.22 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=65.7
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCC----C--CCCceEEEeCCeecCCCCCccccccCCCC--EEE
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSE----Y--LAEYQKLIYAGKILSDDQALSEYNIDESK--FIV 76 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~----i--p~~~qkLi~~Gk~L~D~~tL~~~gI~~~~--~i~ 76 (203)
..|.|+||+..|++++ +|++++||.+||++|+..++.+ + ++++|||||+||+|+|++||++|+|+.++ +||
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4599999999999999 9999999999999999944311 5 58999999999999999999999999887 456
Q ss_pred EEeecC
Q psy4259 77 VMLSKP 82 (203)
Q Consensus 77 v~~~k~ 82 (203)
++++-.
T Consensus 96 lv~r~~ 101 (125)
T 2gow_A 96 LVARET 101 (125)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 655443
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=6.9e-17 Score=127.57 Aligned_cols=74 Identities=27% Similarity=0.482 Sum_probs=71.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
|+|+||+.+|+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++||++++-..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC--CCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHC--cCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecc
Confidence 79999999999999 99999999999999999999 9999999999999999999999999999999999987554
No 60
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.70 E-value=7.7e-17 Score=125.30 Aligned_cols=76 Identities=20% Similarity=0.322 Sum_probs=72.5
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
+..|+|+||+.+|+++. +|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|++|++||++++-.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEG--VQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHC--CCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecC
Confidence 56799999999999999 99999999999999999999 999999999999999999999999999999999998654
No 61
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=2.4e-17 Score=118.36 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=67.0
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
...|+|+|| +.++.|. +|++++||.+||++|+..++ +|+++|||+|+||.| |+.+|++|+|+++++|||+.++.
T Consensus 15 ~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tg--ip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 15 KELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITG--LPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHC--SCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSC
T ss_pred CceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC--cCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEeccc
Confidence 456899999 5788899 99999999999999999999 999999999999999 55699999999999999886553
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-16 Score=118.35 Aligned_cols=75 Identities=27% Similarity=0.476 Sum_probs=71.6
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
+.+|+||++.|+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+++|++|+|++|++|+++++...
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~G 84 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRG 84 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCS
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHC--cChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCC
Confidence 689999999999999 99999999999999999999 9999999999999999999999999999999999886654
No 63
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.69 E-value=4.4e-17 Score=120.85 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=65.8
Q ss_pred eEEEEEeCCCC-eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCC-------CCEEEEE
Q psy4259 8 ISDITQNQWQQ-TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE-------SKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~-~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~-------~~~i~v~ 78 (203)
|.|+|+...++ ++. +|++++||.+||++|+.+.| +|+++|||||+||.|+|++||++|||++ +++||++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~g--iPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lv 78 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK--RPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHC--CCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEE
Confidence 45666666666 677 99999999999999999999 9999999999999999999999999999 9999999
Q ss_pred eec
Q psy4259 79 LSK 81 (203)
Q Consensus 79 ~~k 81 (203)
++.
T Consensus 79 lr~ 81 (118)
T 4ajy_B 79 FRA 81 (118)
T ss_dssp ECC
T ss_pred Eec
Confidence 876
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.4e-17 Score=113.44 Aligned_cols=69 Identities=25% Similarity=0.376 Sum_probs=64.3
Q ss_pred EEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 10 DITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 10 I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+.++++.|+.+. +|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|||++|++|+|+++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITN--VLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHC--CCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHC--cChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 445668899999 99999999999999999999 9999999999999999999999999999999998864
No 65
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=1.1e-16 Score=117.98 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=71.7
Q ss_pred CcceEEEEEeC---CCCeee-ecCC-CCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEe
Q psy4259 5 AHDISDITQNQ---WQQTVS-HLDV-QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 5 ~~~m~I~Vk~~---~g~~~~-~v~~-~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
+..|+|+|++. .|+.+. +|++ ++||.+||++|+..+| +|+++|||+|+|+.|+|+++|++|+|++|++|+|++
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~g--ip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQ--IPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTT--CCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHC--CCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 34699999998 889999 9998 9999999999999999 999999999999999999999999999999999998
Q ss_pred ecCC
Q psy4259 80 SKPK 83 (203)
Q Consensus 80 ~k~~ 83 (203)
+...
T Consensus 103 r~~G 106 (111)
T 1we6_A 103 RERS 106 (111)
T ss_dssp SSCC
T ss_pred EcCC
Confidence 6543
No 66
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.69 E-value=9.7e-17 Score=120.55 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=66.5
Q ss_pred CcceEEEEEeCCCCee-e-ecCCCCcHHHHHHHHHhhhCCC---CCC--CceEEEeCCeecCCCCCccccccCCC-----
Q psy4259 5 AHDISDITQNQWQQTV-S-HLDVQEEVKQLKEKIQSEKGSE---YLA--EYQKLIYAGKILSDDQALSEYNIDES----- 72 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~-~-~v~~~~TV~~LK~~I~~~~~~~---ip~--~~qkLi~~Gk~L~D~~tL~~~gI~~~----- 72 (203)
.+.|+|+||+.+|+.| . ++++++||.+||++|+..++.+ +|+ ++|||||+||+|+|++||++|+|..+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3579999999999999 5 9999999999999997655311 775 79999999999999999999999998
Q ss_pred -CEEEEEeecC
Q psy4259 73 -KFIVVMLSKP 82 (203)
Q Consensus 73 -~~i~v~~~k~ 82 (203)
.++|++++-+
T Consensus 94 v~tmhlVlrl~ 104 (126)
T 1se9_A 94 VTTMHVIIQAP 104 (126)
T ss_dssp CEEEEEEECCC
T ss_pred cEEEEEEeccC
Confidence 4677776544
No 67
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.69 E-value=9.5e-17 Score=114.00 Aligned_cols=75 Identities=25% Similarity=0.305 Sum_probs=68.4
Q ss_pred CcceEEEEEeCCCCeee--ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE---eCCeecCCCCCccccccCCCCEEEEEe
Q psy4259 5 AHDISDITQNQWQQTVS--HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI---YAGKILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~--~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi---~~Gk~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
+..|+|+||. .|+.|. +|++++||.+||++|++.+| +|+++|||+ |+|+.|+|+.+|++|+|++|++|+++.
T Consensus 5 ~~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~g--ip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~ 81 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTG--VLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMG 81 (90)
T ss_dssp CCSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTC--CCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEEC
T ss_pred CceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHC--cCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEe
Confidence 4569999995 777775 88999999999999999999 999999999 999999999999999999999999987
Q ss_pred ecC
Q psy4259 80 SKP 82 (203)
Q Consensus 80 ~k~ 82 (203)
+..
T Consensus 82 ~~~ 84 (90)
T 1v5t_A 82 TRE 84 (90)
T ss_dssp CCS
T ss_pred cCc
Confidence 543
No 68
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.68 E-value=4.2e-17 Score=121.22 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=63.8
Q ss_pred eEEEEEeCCCC-eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccC-------CCCEEEEE
Q psy4259 8 ISDITQNQWQQ-TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID-------ESKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~-~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~-------~~~~i~v~ 78 (203)
|.++|+...++ ++. +|++++||.+||++|+.+.| +|+++|||||+||.|+|++||++|||+ .+++||++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~eg--IP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILK--RPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhC--CCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEE
Confidence 44555555565 578 99999999999999999999 999999999999999999999999999 69999999
Q ss_pred ee
Q psy4259 79 LS 80 (203)
Q Consensus 79 ~~ 80 (203)
++
T Consensus 79 lr 80 (118)
T 2fnj_B 79 FR 80 (118)
T ss_dssp EB
T ss_pred ec
Confidence 87
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=124.75 Aligned_cols=76 Identities=26% Similarity=0.476 Sum_probs=71.8
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
+..|+|+||+++|+++. +|++++||.+||++|+..+| +|+++|||+|+|+.|+|+.+|++|+|+++++|+++++.+
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--ip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--cChHHEEEEECCccccccCCHhHcCCcccceeeeeeccc
Confidence 34699999999999999 99999999999999999999 999999999999999999999999999999999998654
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.67 E-value=2.2e-16 Score=122.71 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=69.7
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE-e-CCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI-Y-AGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi-~-~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
|+|+||+++|+.+. +|++++||.+||++|+..+| +|+++|||+ | +|+.|+|+++|++|+|++|++|+++++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--ip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIG--VHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHC--CCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhC--CCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 89999999999999 99999999999999999999 999999999 9 7999999999999999999999999874
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.67 E-value=2.8e-16 Score=114.54 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=67.3
Q ss_pred ceEEEEEeCCC--Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCcccccc-CCCCEEEEEeec
Q psy4259 7 DISDITQNQWQ--QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI-DESKFIVVMLSK 81 (203)
Q Consensus 7 ~m~I~Vk~~~g--~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI-~~~~~i~v~~~k 81 (203)
.|+|+|++..+ .+++ +|++++||.+||++|++++| +|+++|||+|+|+.++|++||.+||| .+|+++|+++-.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~G--ipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYG--FPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhC--CCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 48899999875 5777 99999999999999999999 99999999999999999999999999 599999998754
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=1.8e-16 Score=127.12 Aligned_cols=74 Identities=27% Similarity=0.455 Sum_probs=71.0
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
.|+|+||+.+|+++. +|++++||.+||++|+...+ +|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++-.
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~g--Ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccC--CCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcC
Confidence 599999999999999 99999999999999999999 999999999999999999999999999999999987654
No 73
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.64 E-value=9.6e-16 Score=117.50 Aligned_cols=73 Identities=27% Similarity=0.492 Sum_probs=69.8
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
|+|+||+.+|+.+. +|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|||++|++|+++.+.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHC--cChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecc
Confidence 78999999999999 99999999999999999999 999999999999999999999999999999999987643
No 74
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.64 E-value=1.4e-17 Score=125.77 Aligned_cols=74 Identities=27% Similarity=0.482 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
|+|+||+.+|+++. +|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+.+|++|||.+|++|+++++...
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~G 75 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (128)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC--cChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCC
Confidence 78999999999999 99999999999999999999 9999999999999999999999999999999999987654
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.63 E-value=9.3e-16 Score=113.61 Aligned_cols=77 Identities=27% Similarity=0.339 Sum_probs=70.1
Q ss_pred CcceEEEEEeCC----------CCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCC
Q psy4259 5 AHDISDITQNQW----------QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESK 73 (203)
Q Consensus 5 ~~~m~I~Vk~~~----------g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~ 73 (203)
+..++|+|+..+ |+.+. +|++++||.+||++|+...| +|+++|||+|+|+.|+|+.+|++|+|++|+
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~g--ip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~ 100 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATG--MPAGKQKLQYEGIFIKDSNSLAYYNMASGA 100 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSS--CCTTTEEEEETTEEECTTSBHHHHTCCSSC
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHC--CChHHEEEEECCEECCCCCCHHHCCCCCCC
Confidence 357889999864 67888 99999999999999999999 999999999999999999999999999999
Q ss_pred EEEEEeecCC
Q psy4259 74 FIVVMLSKPK 83 (203)
Q Consensus 74 ~i~v~~~k~~ 83 (203)
+||++++-..
T Consensus 101 ~i~lv~rl~G 110 (115)
T 1we7_A 101 VIHLALKERS 110 (115)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEEcCC
Confidence 9999886543
No 76
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.63 E-value=2.1e-15 Score=115.62 Aligned_cols=75 Identities=27% Similarity=0.473 Sum_probs=71.1
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
..|+|+||+.+|+.+. +|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|++|++|+++++.+
T Consensus 75 ~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g--i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 150 (152)
T 3b08_A 75 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 150 (152)
T ss_dssp TCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCC
T ss_pred cccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhC--cChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 4589999999999999 99999999999999999999 999999999999999999999999999999999987654
No 77
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=120.40 Aligned_cols=75 Identities=27% Similarity=0.475 Sum_probs=69.9
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
...|.|+||+.+|+++. +|++++||.+||++|+..+| +|+++|+|+|+|+.|+|+++|++|+|++|++||++++-
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC--
T ss_pred cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhC--CCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEec
Confidence 34689999999999999 99999999999999999999 99999999999999999999999999999999998753
No 78
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=9.9e-16 Score=108.48 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=62.9
Q ss_pred ceEEEEEeCCCCee---e-ecCCCCcHHHHHHHHHhh-hCCCCCCCceEEEeC--CeecCCCCCccccccCCCCEEEE
Q psy4259 7 DISDITQNQWQQTV---S-HLDVQEEVKQLKEKIQSE-KGSEYLAEYQKLIYA--GKILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~---~-~v~~~~TV~~LK~~I~~~-~~~~ip~~~qkLi~~--Gk~L~D~~tL~~~gI~~~~~i~v 77 (203)
.|+|+||++.|+.+ . +|++++||.+||++|+.. .+ +++++|||+|. ||+|+|++||++|+|+++++|||
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~--i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQ--WYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSS--SCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcC--CChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 39999999998776 3 789999999999999995 67 99999999976 99999999999999999999875
No 79
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.60 E-value=1.6e-15 Score=106.93 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=63.1
Q ss_pred eEEEEEe--CCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe-------CCeecCCCCCccccccCCCCEEEE
Q psy4259 8 ISDITQN--QWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY-------AGKILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 8 m~I~Vk~--~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~-------~Gk~L~D~~tL~~~gI~~~~~i~v 77 (203)
++|.|.. .+.+.+. .+++++||.+||++|+..+| +|+++||||| .|+.|+|+++|++|+|++|++|||
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~G--ip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihl 80 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFA--TPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHV 80 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSC--CCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHC--CCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEE
Confidence 4555543 3455667 99999999999999999999 9999999997 489999999999999999999999
Q ss_pred EeecC
Q psy4259 78 MLSKP 82 (203)
Q Consensus 78 ~~~k~ 82 (203)
+-+.|
T Consensus 81 vd~~P 85 (86)
T 4b6w_A 81 VDLQP 85 (86)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 87654
No 80
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=7.6e-17 Score=125.23 Aligned_cols=73 Identities=27% Similarity=0.494 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
|+|+||+.+|+++. +|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++-.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~g--ip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhC--CCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeecc
Confidence 78999999999999 99999999999999999999 999999999999999999999999999999999997543
No 81
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.57 E-value=5.8e-15 Score=105.97 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=63.9
Q ss_pred CcceEEEEEeCCCC--eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeC--Ce---ec-CCCCCccccccCCCCEE
Q psy4259 5 AHDISDITQNQWQQ--TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYA--GK---IL-SDDQALSEYNIDESKFI 75 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~--~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~--Gk---~L-~D~~tL~~~gI~~~~~i 75 (203)
++.++|+|+...++ .++ +|++++||.+||++|+..+| +|+++|||+|. |+ .| +|+++|++|+|++|++|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~G--iP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gsti 90 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTG--GCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRL 90 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHC--SCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHC--cCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEE
Confidence 45689999987664 677 99999999999999999999 99999999998 55 34 88899999999999999
Q ss_pred EEE
Q psy4259 76 VVM 78 (203)
Q Consensus 76 ~v~ 78 (203)
+|+
T Consensus 91 hlv 93 (95)
T 2kjr_A 91 HVV 93 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 82
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=4.8e-15 Score=108.52 Aligned_cols=73 Identities=15% Similarity=0.089 Sum_probs=65.9
Q ss_pred cceEEEEEeCCCCeee-ecC-CCCcHHHHHHHHHhhhCCCCCCCceEEEeCCe-----------e----cCCCCCccccc
Q psy4259 6 HDISDITQNQWQQTVS-HLD-VQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGK-----------I----LSDDQALSEYN 68 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~-~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk-----------~----L~D~~tL~~~g 68 (203)
..|.|+||+.+|+. . +|+ +++||.+||++|+..++ +|+++|+|+|.|+ . ++|+++|++||
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~g--ip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~g 82 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQ--IPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLN 82 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSC--CCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhC--cCcccCEEEECCccccccCccccccccccCCCCCCHHHCC
Confidence 45999999999966 6 999 99999999999999999 9999999999998 4 57889999999
Q ss_pred cCCCCEEEEEeec
Q psy4259 69 IDESKFIVVMLSK 81 (203)
Q Consensus 69 I~~~~~i~v~~~k 81 (203)
|++|++|||....
T Consensus 83 i~~G~~L~l~~~~ 95 (107)
T 1wf9_A 83 LAHGSMVYLAYEG 95 (107)
T ss_dssp CCTTCEEECCCSS
T ss_pred CCCCCEEEEEeCC
Confidence 9999999987653
No 83
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.57 E-value=7.4e-15 Score=125.65 Aligned_cols=74 Identities=27% Similarity=0.498 Sum_probs=70.3
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+..|+|+||+..|+.+. +|++++||.+||++|+...| +|+++|||+|+||.|+|+++|++|+|+++++|+|+++
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~G--Ip~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHC--CCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC--cChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 45799999999999999 99999999999999999999 9999999999999999999999999999999999875
No 84
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=108.02 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=65.5
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
+|.++++.+.|+++. +|++++||.+||++|++++| +|+++|||+| .|+ |+|+.+|++|+|+.|++||++...
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tg--Ipp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQ--IPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHC--CCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHC--CChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 588888889999999 99999999999999999999 9999999996 566 999999999999999999987643
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=1.8e-14 Score=103.09 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=65.0
Q ss_pred ceEEEEEeCCCC-eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC---ee----cCCCCCccccccCCCCEEEE
Q psy4259 7 DISDITQNQWQQ-TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG---KI----LSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 7 ~m~I~Vk~~~g~-~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G---k~----L~D~~tL~~~gI~~~~~i~v 77 (203)
.+.|+|+..... .++ +|++++||.+||++|+..+| +|+++|||+|.| +. ++|+++|++|||.+|++|||
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~g--ip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v 84 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVG--SPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHV 84 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTC--SCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEE
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHC--CCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEE
Confidence 588999876553 577 99999999999999999999 999999999986 54 58899999999999999998
Q ss_pred EeecCC
Q psy4259 78 MLSKPK 83 (203)
Q Consensus 78 ~~~k~~ 83 (203)
+-..|.
T Consensus 85 ~d~~P~ 90 (95)
T 1v6e_A 85 IDHSGS 90 (95)
T ss_dssp BCCSCC
T ss_pred EECCcc
Confidence 765443
No 86
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.56 E-value=1.3e-14 Score=104.45 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=64.4
Q ss_pred CcceEEEEEeCCC--Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC---ee----cCCCCCccccccCCCCE
Q psy4259 5 AHDISDITQNQWQ--QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG---KI----LSDDQALSEYNIDESKF 74 (203)
Q Consensus 5 ~~~m~I~Vk~~~g--~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G---k~----L~D~~tL~~~gI~~~~~ 74 (203)
++.+.|.|+.... +.++ +|++++||.+||++|+..+| +|+++|||+|.| +. ++|+++|++|+|++|++
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~G--ip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~ 89 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCG--TSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFR 89 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHC--CCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHC--cCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCE
Confidence 4568888887554 4677 99999999999999999999 999999999988 33 58889999999999999
Q ss_pred EEEEee
Q psy4259 75 IVVMLS 80 (203)
Q Consensus 75 i~v~~~ 80 (203)
|+|+-.
T Consensus 90 Ihlvd~ 95 (97)
T 2kj6_A 90 LHIIDL 95 (97)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998754
No 87
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.53 E-value=3.8e-14 Score=106.06 Aligned_cols=80 Identities=9% Similarity=0.105 Sum_probs=67.5
Q ss_pred CCCCcceEEEEEeCCCC-eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC---ee----cCCCCCccccccCCC
Q psy4259 2 GMLAHDISDITQNQWQQ-TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG---KI----LSDDQALSEYNIDES 72 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~g~-~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G---k~----L~D~~tL~~~gI~~~ 72 (203)
|.++..|.|+|+...+. .+. +|++++||.+||.+|+..+| +|+++|||+|.| +. ++|+++|++|||.+|
T Consensus 1 ~~m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~G--ip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 1 GSMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVG--TTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp --CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHC--CCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSS
T ss_pred CCCCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhC--CCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCC
Confidence 34556799999986554 567 99999999999999999999 999999999987 43 478899999999999
Q ss_pred CEEEEEeecCC
Q psy4259 73 KFIVVMLSKPK 83 (203)
Q Consensus 73 ~~i~v~~~k~~ 83 (203)
++|||+...|.
T Consensus 79 ~~ihvvd~~p~ 89 (122)
T 1t0y_A 79 YRIHAVDVTGG 89 (122)
T ss_dssp EEEEEEECTTC
T ss_pred CEEEEEeCCCC
Confidence 99999875543
No 88
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.51 E-value=3.1e-14 Score=100.08 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=63.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeC--CeecC---CCCCccccccCCCCEEEEEee
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYA--GKILS---DDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~--Gk~L~---D~~tL~~~gI~~~~~i~v~~~ 80 (203)
|+|.||+.+|+... ++++++||.+||++|+++.| +++++|+|+|+ +|.|+ |+++|++|||++|++|||...
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~g--i~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITG--IAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTC--CCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhC--CCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999999996655 59999999999999999999 99999999997 48874 678999999999999987644
No 89
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.50 E-value=2.1e-14 Score=123.77 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=67.9
Q ss_pred CCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE---eCCeecCCCCCccccccCCCCEEEEE
Q psy4259 3 MLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI---YAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 3 ~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi---~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
|..+.|+|+|| +.|++|. +|++++||.+||++|++.+| +|+++|||| |+||.|+|+.+|++|||++|++|+++
T Consensus 1 ~~~~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tg--Vpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~ 77 (320)
T 3shq_A 1 MEVKEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQ--VRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV 77 (320)
T ss_dssp ---CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHC--CCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred CCCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHC--cCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence 44567999999 5899999 99999999999999999999 999999999 89999999999999999999999998
Q ss_pred eecCC
Q psy4259 79 LSKPK 83 (203)
Q Consensus 79 ~~k~~ 83 (203)
++...
T Consensus 78 gs~~~ 82 (320)
T 3shq_A 78 GSTEA 82 (320)
T ss_dssp CCCC-
T ss_pred ccchh
Confidence 76543
No 90
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.44 E-value=8.5e-15 Score=117.05 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
|+|+||+++|++|+ +|++++||.+||.+|+...| +|+++|+|||+|+.|+|+.||+ ++++|||+++-
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keG--IP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMG--FEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhC--cChhHEEEEecCeECCCCCccc-----CCCEEEEEEec
Confidence 78999999999999 99999999999999999999 9999999999999999999998 88999998753
No 91
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.44 E-value=5.1e-13 Score=95.59 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=71.0
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
..|+|+|++.+|+.+. .|.+++++..||++++++.| ++++.+||+|.|+.|.+++|+++|++.+|++|+|+....
T Consensus 6 ~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~g--i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~ 81 (94)
T 2io1_B 6 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG--LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 81 (94)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT--CCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCE
T ss_pred CeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhC--CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4699999999999999 99999999999999999999 999999999999999999999999999999999987554
No 92
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=7.3e-13 Score=94.25 Aligned_cols=78 Identities=12% Similarity=0.200 Sum_probs=71.5
Q ss_pred CCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 3 MLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 3 ~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
|....|.|+|++.+|+.+. .|.+++++..|++.++++.| ++++.+||+|.|+.|.+++|.++|++.+|++|+|+...
T Consensus 1 ~~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~g--i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 1 MANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG--LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTT--CCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC--CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 5567899999999999999 99999999999999999999 99999999999999999999999999999999998765
Q ss_pred C
Q psy4259 82 P 82 (203)
Q Consensus 82 ~ 82 (203)
.
T Consensus 79 ~ 79 (91)
T 2io0_B 79 T 79 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 93
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.39 E-value=1.8e-12 Score=88.09 Aligned_cols=69 Identities=12% Similarity=0.208 Sum_probs=66.7
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
|.|+|++.+|+.+. .|.+++++..|++.++++.| ++++.+||+|.|+.|.+++|.++|++.+|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~g--i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG--LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHT--CCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC--CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 78999999999999 99999999999999999999 99999999999999999999999999999999986
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.36 E-value=3.9e-12 Score=88.06 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=68.2
Q ss_pred CcceEEEEEeCCCC-eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 5 AHDISDITQNQWQQ-TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~-~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
+..|.|+|++.+|+ .+. .|.+++++..|++.++++.| ++++.+||+|.|+.|.+++|.++|++.+|++|+|+
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~g--i~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMG--LSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHT--CTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhC--CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45799999999996 788 99999999999999999999 99999999999999999999999999999999986
No 95
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.32 E-value=7.5e-12 Score=89.28 Aligned_cols=74 Identities=11% Similarity=0.198 Sum_probs=69.9
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
..|.|+|++.+|+.+. .|..++++..|+..++++.| ++++.+||+|.|+.|.++.|.++|++.+|++|+|+...
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~g--i~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG--LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHT--CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhC--CCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 4699999999999888 99999999999999999999 99999999999999999999999999999999998754
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.31 E-value=1.2e-11 Score=88.64 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=65.6
Q ss_pred CCCCcceEEEEEe---CCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC------ee-c-CCCCCcccccc
Q psy4259 2 GMLAHDISDITQN---QWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG------KI-L-SDDQALSEYNI 69 (203)
Q Consensus 2 ~~~~~~m~I~Vk~---~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G------k~-L-~D~~tL~~~gI 69 (203)
|+.+..++|+|+. ..|..+. .++.++||.+||.+|+..+| +|+..|||.|.+ .. | +|+++|++|+|
T Consensus 4 ~~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~g--ip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i 81 (97)
T 1wjn_A 4 GSSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLK--VPVSELLLSYESSKMPGREIELENDLQPLQFYSV 81 (97)
T ss_dssp CSSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTT--CCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTC
T ss_pred cccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHC--CChhHeEEEEEcCCCCceeeccCCCcccHhhcCC
Confidence 3455568888876 3577788 99999999999999999999 999999999873 22 5 56689999999
Q ss_pred CCCCEEEEEeecC
Q psy4259 70 DESKFIVVMLSKP 82 (203)
Q Consensus 70 ~~~~~i~v~~~k~ 82 (203)
.+|++|||....|
T Consensus 82 ~~G~~I~V~d~~p 94 (97)
T 1wjn_A 82 ENGDCLLVRWSGP 94 (97)
T ss_dssp CTTCEEEEECCSS
T ss_pred CCCCEEEEEecCC
Confidence 9999999986543
No 97
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=1.2e-11 Score=90.05 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=70.5
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
..|.|+|++.+|+.+. .|..++++..|+..++++.| ++++.+||+|.|+.|.+++|.++|++.+|++|+|+....
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~g--i~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~ 98 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQG--LSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQT 98 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHT--CCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhC--CCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEecc
Confidence 4699999999999888 99999999999999999999 999999999999999999999999999999999986543
No 98
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.24 E-value=1.3e-11 Score=90.58 Aligned_cols=74 Identities=11% Similarity=0.223 Sum_probs=70.1
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
..|.|+|++.+|+.+. .|..++++..|++.++++.| ++++.+||+|.|+.|.+++|.++|++.+|++|+|+...
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~g--i~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQG--ISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHT--CCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhC--CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 4599999999999999 99999999999999999999 99999999999999999999999999999999998754
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.23 E-value=3.5e-11 Score=87.80 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=68.8
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
..|.|+|++ +|+.+. .|..++++..|++.++++.| ++++.+||+|.|+.|.+++|.++|++.+|++|+|+...
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~g--i~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT--CCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhC--CCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeec
Confidence 359999999 999988 99999999999999999999 99999999999999999999999999999999998754
No 100
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=3.4e-09 Score=78.14 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=68.8
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
..|.|+|+..+|+.+. .|..++++..|+..++++.| ++.+.+||+|.|+.|.++.|.+++++.+|++|.|+..
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~G--l~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG--VPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHT--CCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhC--CChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 4589999998999888 99999999999999999999 9999999999999999999999999999999999864
No 101
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.72 E-value=9.7e-09 Score=71.02 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=57.2
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCee---c--CCCCCccccccCCCCEEEEE
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKI---L--SDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~---L--~D~~tL~~~gI~~~~~i~v~ 78 (203)
..|.|.||+.+| .+. +|++++||.+||++|++.++ ++++.+.|.++-.. | .++.+|+++||++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~--i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFG--FQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTC--CCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcC--CCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358999998887 455 99999999999999999999 88888776554332 3 36789999999999999863
No 102
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.5e-08 Score=78.26 Aligned_cols=75 Identities=12% Similarity=0.227 Sum_probs=68.9
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
..|.|+|+ .+|+.+. .|..++++..||..++++.| ++.+.+|++|.|+.|.++.|.+++++.+|++|+++.....
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~G--i~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~g 103 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 103 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHS--SCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhC--CChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCc
Confidence 34889997 4888888 99999999999999999999 9999999999999999999999999999999999876544
No 103
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.67 E-value=4.1e-08 Score=78.14 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=67.9
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
.|.|+|+ .+|+.+. .|..++++..|++.++++.| +++..+|++|.|+.|.+++|.+++++.+||+|.|+.....
T Consensus 57 ~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqG--L~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~G 131 (207)
T 3tix_A 57 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIG 131 (207)
T ss_dssp EEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTT--CCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCT
T ss_pred cEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhC--CCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccC
Confidence 4888887 4888888 99999999999999999999 9999999999999999999999999999999999875543
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.64 E-value=3.1e-07 Score=62.54 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=65.5
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCC-ceEEEeCCeecCCCCCccccccCCCCEEEEEe
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-YQKLIYAGKILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
+.+.+|+.+...+. .|..+.+|..|-+....+.+ ++++ .++|.|.|..|..+.++.+|++.+|+.|-+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~--I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK--ISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT--CCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC--CCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 67788888888888 99999999999999999999 9999 99999999999999999999999999999875
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.46 E-value=7.4e-07 Score=63.71 Aligned_cols=71 Identities=15% Similarity=0.249 Sum_probs=65.3
Q ss_pred cceEEEEEeCCCC-eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 6 HDISDITQNQWQQ-TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 6 ~~m~I~Vk~~~g~-~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
..+.|+|+..+|+ .+. .|..++++..|....+++.| ++++..|++|.|..|..+.|.+++++.+|++|.|+
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g--~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG--LSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT--CSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC--CCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4588899988885 677 99999999999999999999 99999999999999999999999999999999875
No 106
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.34 E-value=5.9e-08 Score=78.22 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
.|.|+| ..+|+.+. .|..++.+..|++.++++.| ++++.+|++|+|+.|.+++|.+++++.+||+|.|+.....
T Consensus 21 ~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqG--Ls~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~G 95 (227)
T 3v7o_A 21 HINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (227)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred eEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhC--CCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccC
Confidence 578888 67888888 99999999999999999999 9999999999999999999999999999999999865543
No 107
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.21 E-value=9e-06 Score=57.53 Aligned_cols=72 Identities=11% Similarity=0.119 Sum_probs=66.1
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
.+.|+|+. +|..+. .+..++-...|.+..+.+.| +.++..+++|.|..+.++.|-+++++.++++|-+++.+
T Consensus 21 ~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~g--v~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 21 LFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLG--VSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp CEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHT--SCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred eEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcC--CChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 48899994 677777 99999999999999999999 99999999999999999999999999999999998765
No 108
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.11 E-value=9.5e-06 Score=65.56 Aligned_cols=75 Identities=12% Similarity=0.232 Sum_probs=68.1
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
+.+.|+|+. +++.+. .|..++++..||+..+++.| ++.+.+|++|.|+.+.+++|-.++.+.++++|.+......
T Consensus 20 ~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g--~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~G 95 (209)
T 3uf8_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 95 (209)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHT--CCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTT
T ss_pred CcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhC--CChheEEEEECCEeccCCCChHHhhhcccccchhhccccc
Confidence 458889987 777777 99999999999999999999 9999999999999999999999999999999998865544
No 109
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.02 E-value=1.4e-05 Score=55.09 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=58.4
Q ss_pred eEEEEEe--CCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCC---CceEEEeCCeecCCCCCccccccCCCCEEEE
Q psy4259 8 ISDITQN--QWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLA---EYQKLIYAGKILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 8 m~I~Vk~--~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~---~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v 77 (203)
+.|++.. ..++.|. .++...||..|++.+.+.++...+. ...|+.-+|.+|.++++|++|+|.+||.|.+
T Consensus 5 I~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 5 IDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4566664 6789999 9999999999999999999833221 2457888999999999999999999999975
No 110
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.98 E-value=2.7e-05 Score=55.12 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=50.1
Q ss_pred EEEEEeCC-CCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecC--CCCCccccc-cCCCCEEEEE
Q psy4259 9 SDITQNQW-QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILS--DDQALSEYN-IDESKFIVVM 78 (203)
Q Consensus 9 ~I~Vk~~~-g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~--D~~tL~~~g-I~~~~~i~v~ 78 (203)
-|+|=... +..+. .+.+++||..||++|++++| +++++|+|+|.||.|. .+..-..|- -...+-|+++
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTg--Ip~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~ 86 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK--IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 86 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHC--CCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEE
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhC--CCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEE
Confidence 34554444 55566 99999999999999999999 9999999999997764 334445553 3444556544
No 111
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.94 E-value=4.4e-05 Score=52.68 Aligned_cols=70 Identities=10% Similarity=0.086 Sum_probs=59.2
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeecC---CCCCccccccCCCCEEEEE
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKILS---DDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L~---D~~tL~~~gI~~~~~i~v~ 78 (203)
...+|.||..+|+.+. .+..++||.+|...|.. .+ .+....+|+. -.|.|. .++||+++|+.++++|+|-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~--~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KG--FPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TT--CCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cC--CCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 3478999999999999 99999999999999988 56 6778889884 468884 3589999999998888764
No 112
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.92 E-value=1.4e-06 Score=75.75 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=0.0
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
..+.|+|+. +|+.+. .|..++++..|++.++++.| ++++.+|++|.|+.|.++.|.+++++.+|++|.++....
T Consensus 20 ~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G--~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 20 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhC--CCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 357888886 677777 99999999999999999999 999999999999999999999999999999999987544
No 113
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.91 E-value=1.6e-05 Score=59.50 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=56.7
Q ss_pred EEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCC-------------------------------------ceE
Q psy4259 9 SDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-------------------------------------YQK 50 (203)
Q Consensus 9 ~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-------------------------------------~qk 50 (203)
.|+|+.++|...+ .|+.+.||.+++..|+.+.| ++.. .+|
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig--I~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~k 90 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG--ITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQK 90 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT--CCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCS
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC--CCCcccccccccccccccccCchhhccccccccchhHHHHHHHH
Confidence 4899999999999 99999999999999999999 6633 445
Q ss_pred EEe--CCeecCCCCCccccccCCCCEEEE
Q psy4259 51 LIY--AGKILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 51 Li~--~Gk~L~D~~tL~~~gI~~~~~i~v 77 (203)
|-. .+..|+++.||.++||.++++|.+
T Consensus 91 L~~dd~~~WLD~srtL~EQGI~e~~tllL 119 (128)
T 2kc2_A 91 LHTDDELNWLDHGRTLREQGVEEHETLLL 119 (128)
T ss_dssp CCCSSSEEEECSSSCHHHHTCCTTSEEEE
T ss_pred hcccCCCCcccCCCcHHHcCCCCCCEEEE
Confidence 432 247888899999999999999765
No 114
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.83 E-value=8.7e-05 Score=51.97 Aligned_cols=76 Identities=7% Similarity=-0.017 Sum_probs=67.4
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
+.-|.|+|-..+++.+. .|.++.++.++-+...+++| +.+++-.|.|++|.|+-+..+.-.|+.+|+.+.++.++.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~g--l~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD--FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTT--CCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhC--CChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 34579999999999999 99999999999999999999 999999999999999888999999999999999875444
No 115
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.81 E-value=0.00021 Score=51.84 Aligned_cols=72 Identities=8% Similarity=0.050 Sum_probs=61.0
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeecC--C-CCCccccccCCCCEEEEEee
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKILS--D-DQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L~--D-~~tL~~~gI~~~~~i~v~~~ 80 (203)
..+|.||..+|+.+. .+..++||.+|.+.|....+ .+.....|+. --|.|. | ++||+++|+.+..+|+|...
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~--~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG--NTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT--TSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC--CCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 589999999999999 99999999999999999887 6667788874 468886 3 58999999999888876543
No 116
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.68 E-value=5.6e-06 Score=72.60 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=0.0
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEeecCC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPK 83 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k~~ 83 (203)
.+.|+|+. ++..+. .|..++++..|++..+++.| ++...++++|.|+.|.+++|.+++++.+|++|.++.....
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g--~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~g 104 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQG--KEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIG 104 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhC--CCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccc
Confidence 47788876 667777 99999999999999999999 9999999999999999999999999999999999875543
No 117
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.43 E-value=0.00043 Score=51.36 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=59.5
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE--eCCeec--CC-CCCccccccCCCCEEEEE
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI--YAGKIL--SD-DQALSEYNIDESKFIVVM 78 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi--~~Gk~L--~D-~~tL~~~gI~~~~~i~v~ 78 (203)
...+|.||..+|+.+. .+..++||.+|...|... + ++.....|+ |-.|.| .| ++||.++|+.+...|+|.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~--~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~ 117 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-G--YPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQ 117 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-H--CCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C--CCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEE
Confidence 3589999999999999 999999999999999886 6 777788887 447888 34 589999999998888764
No 118
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.20 E-value=0.0024 Score=46.14 Aligned_cols=69 Identities=12% Similarity=0.110 Sum_probs=57.8
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeecC-C-CCCccccccCCCCEEEEE
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKILS-D-DQALSEYNIDESKFIVVM 78 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L~-D-~~tL~~~gI~~~~~i~v~ 78 (203)
..+|.||..+|+.+. .+..++||.+|...|... + +.....+|+. -.|.|. | ++||+++|+.+..+|+|.
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~--~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-G--YHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-T--CCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-C--CCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 589999999999999 999999999999999954 5 5667788874 478886 3 589999999998888664
No 119
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.03 E-value=0.0017 Score=48.24 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=55.3
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeecCCC-CCccccccCCCCEE
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKILSDD-QALSEYNIDESKFI 75 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L~D~-~tL~~~gI~~~~~i 75 (203)
...+|.||..+|+.+. .+..++||.+|.+.|...... +......|+. -.|.|.|. +||.++|+.+...|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~-~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPA-MAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSG-GGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcC-CCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 3588999999999999 999999999999999986421 4456678874 47889764 89999999984443
No 120
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=96.55 E-value=0.0032 Score=40.89 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=35.2
Q ss_pred CCh-HHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHh
Q psy4259 132 EDP-LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELIS 177 (203)
Q Consensus 132 ~~p-l~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~ 177 (203)
.|| +..++++|.|.+.-+.+++||+.+..++ +||.+.+.|.
T Consensus 10 ~dPe~~~~m~dP~~~~~lq~i~~NP~~~~~~~-----~dP~v~~~~~ 51 (62)
T 2lnm_A 10 ENPDVAMAFQNPRVQAALMECSENPMNIMKYQ-----NDKEVMDVFN 51 (62)
T ss_dssp TSHHHHHHTTSHHHHHHHHHHTTCGGGHHHHT-----TCHHHHHHHH
T ss_pred cChHHHHHcCCHHHHHHHHHHHHCHHHHHHHH-----hChHHHHHHH
Confidence 577 7889999999999999999999976654 5999998875
No 121
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0031 Score=42.21 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=23.3
Q ss_pred HHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHh
Q psy4259 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELIS 177 (203)
Q Consensus 135 l~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~ 177 (203)
+..++++|.++++-+.+++||..+..++ +||.++..|+
T Consensus 22 i~~im~DP~~~~~lq~~~~NP~~~~k~~-----~nP~v~~~i~ 59 (71)
T 2llw_A 22 VAAIMQDPVMQSILQQAQQNPAALQEHM-----KNPEVFKKIQ 59 (71)
T ss_dssp HHHHHTCTHHHHHHHHHHHCHHHHHHHH-----HSHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHCHHHHHHHH-----hCHHHHHHHH
Confidence 5556666666666666666666655544 2666666553
No 122
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.19 E-value=0.024 Score=39.00 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=62.8
Q ss_pred CCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe---CCeecCCCCCccccccCCCCEEEEE
Q psy4259 3 MLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY---AGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 3 ~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~---~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
|...++++.|.....++.. .|++..++.+|--.|.+++. +.++..-|.. .+..|+=+++|.+|||++ ++.+
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kce--fdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~ 80 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCE--FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAM 80 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTT--CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEE
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhccc--CChhhEEEecCCCCCcccchhcchhhhhhhh---hhee
Confidence 3455799999988877777 99999999999999999999 9999888875 367898899999999997 6665
Q ss_pred eecC
Q psy4259 79 LSKP 82 (203)
Q Consensus 79 ~~k~ 82 (203)
-.++
T Consensus 81 d~~~ 84 (91)
T 2daj_A 81 DVNR 84 (91)
T ss_dssp ECCC
T ss_pred cccc
Confidence 4444
No 123
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.40 E-value=0.076 Score=38.37 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=48.8
Q ss_pred ceEEEEEeCC--CCeee-ecCCCCcHHHHHHHHHhhhCCCCC------CCceEEEeC----CeecCCC------------
Q psy4259 7 DISDITQNQW--QQTVS-HLDVQEEVKQLKEKIQSEKGSEYL------AEYQKLIYA----GKILSDD------------ 61 (203)
Q Consensus 7 ~m~I~Vk~~~--g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip------~~~qkLi~~----Gk~L~D~------------ 61 (203)
++.|.+-... +..+. .|-..+||.++|+||....-+..| ++.+.|-|. |++|.|.
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkr 90 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKR 90 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCC
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceE
Confidence 3556654433 34455 777899999999999977643322 456667762 5677662
Q ss_pred -CCccccccCCCCEEEEE
Q psy4259 62 -QALSEYNIDESKFIVVM 78 (203)
Q Consensus 62 -~tL~~~gI~~~~~i~v~ 78 (203)
.||..|+|.+|++|.++
T Consensus 91 LNTL~HY~V~dgatl~l~ 108 (111)
T 4e71_A 91 VNTLMHYNVRDGATLILS 108 (111)
T ss_dssp CCBHHHHTCCTTCEEEEE
T ss_pred ecchhhcCCCCCCEEEEE
Confidence 26778999999999875
No 124
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.22 E-value=0.062 Score=35.90 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=44.6
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
|+|+||........ +++...||.+|-+. .+ ++++..-+..+|+++..+. +.+||.|.++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lg--l~~~~VvV~vNG~~v~~d~------~l~GD~VeIv 60 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VD--LSPHEVTVLVDGRPVPEDQ------SVEVDRVKVL 60 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TC--CCSSCCCEECCCCCCCTTS------SSCCCCEEEC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cC--CCcceEEEEECCEECCHHH------CCCCCEEEEE
Confidence 78899977444344 99999999987654 77 9999887888999887655 2348888765
No 125
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=95.14 E-value=0.11 Score=38.91 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=50.8
Q ss_pred ceEEEEEeCCC------Ceee-ecCCCCcHHHHHHHHHhhhCCCC------CCCceEEEe----CCe-ecCCC-------
Q psy4259 7 DISDITQNQWQ------QTVS-HLDVQEEVKQLKEKIQSEKGSEY------LAEYQKLIY----AGK-ILSDD------- 61 (203)
Q Consensus 7 ~m~I~Vk~~~g------~~~~-~v~~~~TV~~LK~~I~~~~~~~i------p~~~qkLi~----~Gk-~L~D~------- 61 (203)
++.|.|-...+ ..+. .|-..+||.++|+||....-++. .+++.-|-| .|+ +|.|.
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~ 103 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 103 (138)
T ss_dssp EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCccccc
Confidence 45666544422 3455 77789999999999998876544 344556665 244 47664
Q ss_pred ------CCccccccCCCCEEEEEeec
Q psy4259 62 ------QALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 62 ------~tL~~~gI~~~~~i~v~~~k 81 (203)
.||+.|+|.+|++|.++-+.
T Consensus 104 ~~wkrLNTL~HY~V~Dga~l~l~~~~ 129 (138)
T 2r2o_A 104 GLWRRLNTLQHYKVPDGATVALVPCL 129 (138)
T ss_dssp TTEEECCBHHHHTCCTTCEEEEEEC-
T ss_pred CCceeecchhccCCCCCCEEEEEECC
Confidence 27899999999999876433
No 126
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.06 E-value=0.21 Score=32.67 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=45.4
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
.|+|+|....++ .. ++....||.+|.+.+ + ++.....+..+|..+..+. -+++||.|.++
T Consensus 4 ~m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~--~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 4 GMKFTVITDDGK-KILESGAPRRIKDVLGEL----E--IPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp CEEEEEEETTEE-EEEEESSCCBHHHHHHHT----T--CCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred eEEEEEeCccCc-eeEECCCCCcHHHHHHHh----C--CCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 588888854433 34 777778999998875 5 6677778889999997654 57889999876
No 127
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.72 E-value=0.2 Score=40.56 Aligned_cols=72 Identities=11% Similarity=0.129 Sum_probs=53.8
Q ss_pred eEEEEEeCCCC--eee-ecCCCCcHHHHHHHHHhhhCCCCCCC-ceEEEe-C----CeecCCC-CCccccccCCCCEEEE
Q psy4259 8 ISDITQNQWQQ--TVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-YQKLIY-A----GKILSDD-QALSEYNIDESKFIVV 77 (203)
Q Consensus 8 m~I~Vk~~~g~--~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-~qkLi~-~----Gk~L~D~-~tL~~~gI~~~~~i~v 77 (203)
+.+++...... .++ .++..+||.+|++.+...++ ++.+ ..||-. . ...|.|. .||.++++.++..|.+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~--i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~ill 217 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFN--IPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVI 217 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTT--CCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhC--CCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEE
Confidence 44455433322 244 77999999999999999999 9887 588753 2 2457664 8999999999999987
Q ss_pred Eeec
Q psy4259 78 MLSK 81 (203)
Q Consensus 78 ~~~k 81 (203)
=++.
T Consensus 218 E~r~ 221 (231)
T 3jyu_A 218 EPQN 221 (231)
T ss_dssp EECC
T ss_pred EEec
Confidence 7654
No 128
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.72 E-value=0.14 Score=41.03 Aligned_cols=73 Identities=10% Similarity=0.148 Sum_probs=54.2
Q ss_pred ceEEEEEeCCCC--eee-ecCCCCcHHHHHHHHHhhhCCCCCCC-ceEEE--e-CC--eecCCC-CCccccccCCCCEEE
Q psy4259 7 DISDITQNQWQQ--TVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-YQKLI--Y-AG--KILSDD-QALSEYNIDESKFIV 76 (203)
Q Consensus 7 ~m~I~Vk~~~g~--~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-~qkLi--~-~G--k~L~D~-~tL~~~gI~~~~~i~ 76 (203)
++.+++...... .++ .++..+||.+|++.+...++ ++.+ ..||- | .+ ..|.|. +||.++++.++..|+
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~--i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~il 204 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFS--IPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLV 204 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTT--CCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEE
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhC--CCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEE
Confidence 344555443322 245 88999999999999999999 9887 57874 3 22 456664 799999999999998
Q ss_pred EEeec
Q psy4259 77 VMLSK 81 (203)
Q Consensus 77 v~~~k 81 (203)
+=++.
T Consensus 205 lE~r~ 209 (217)
T 4a3p_A 205 IEQKN 209 (217)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 87654
No 129
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.45 E-value=0.41 Score=35.25 Aligned_cols=65 Identities=28% Similarity=0.264 Sum_probs=45.8
Q ss_pred CCCeee-ecCCCCcHHHHHHHHHhhhCCCCC------CCceEEEe-C---Ce-ecCCC-------------CCccccccC
Q psy4259 16 WQQTVS-HLDVQEEVKQLKEKIQSEKGSEYL------AEYQKLIY-A---GK-ILSDD-------------QALSEYNID 70 (203)
Q Consensus 16 ~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip------~~~qkLi~-~---Gk-~L~D~-------------~tL~~~gI~ 70 (203)
++..+. .|-..+||.++|++|....-+..| ++.+.|-| . |+ +|.|. .||..|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 344566 777889999999999987643333 45677776 2 33 36652 267889999
Q ss_pred CCCEEEEEee
Q psy4259 71 ESKFIVVMLS 80 (203)
Q Consensus 71 ~~~~i~v~~~ 80 (203)
+|++|.++.+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999987643
No 130
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.42 E-value=0.11 Score=44.58 Aligned_cols=70 Identities=13% Similarity=0.034 Sum_probs=54.4
Q ss_pred eEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCC--CCCCceEEEe------CCeecCCCCCccccccCCCCEEEEE
Q psy4259 8 ISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSE--YLAEYQKLIY------AGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~--ip~~~qkLi~------~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
+.++|... +.+.+ .++++.||.++...|.++.+.. .+.++--|.. +|+.|++.+||+.|++.+|+.|...
T Consensus 4 ~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 4 LSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 44555544 55556 9999999999999998887521 3566777776 5788999999999999999988764
No 131
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=94.23 E-value=0.023 Score=37.74 Aligned_cols=40 Identities=20% Similarity=0.457 Sum_probs=29.8
Q ss_pred Ch-HHHhhCCHHHHHHHHHHHhCCCcHHH-HHHHHhhcCHHHHHHHh
Q psy4259 133 DP-LAFLRTQPQFQQMRTVVQQNPELLPT-VLQQIGQSNPALLELIS 177 (203)
Q Consensus 133 ~p-l~~l~~~P~~~~~r~~i~~nP~~l~~-il~~l~~~nP~l~~~i~ 177 (203)
|| +..++.+|.|.++.+.+++||+.+.. .+ +||.+.+.|.
T Consensus 22 dP~t~~~~~DP~~~~~lq~i~~NP~~i~~~~~-----~dPrv~~~l~ 63 (71)
T 2llv_A 22 NPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLF-----TDPRLMTIMA 63 (71)
T ss_dssp SSTTHHHHHSCTHHHHHHHHHHSCTTHHHHTT-----TCHHHHHHHH
T ss_pred ChHHHHHhcCHHHHHHHHHHHHCHHHHHHHHh-----hCcHHHHHHH
Confidence 44 56677888888888888888888655 44 4888887764
No 132
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=93.03 E-value=0.27 Score=32.55 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=30.2
Q ss_pred HHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhhCHHHHHHHH
Q psy4259 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187 (203)
Q Consensus 135 l~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~n~~~f~~ml 187 (203)
+..++++|.++.+ ++||++.. +++++. +||...+-..+|| .++.++
T Consensus 13 ~~~~m~dPEi~~i----m~DP~~~~-~lq~~~-~NP~~~~k~~~nP-~v~~~i 58 (71)
T 2llw_A 13 YQRAMKDPEVAAI----MQDPVMQS-ILQQAQ-QNPAALQEHMKNP-EVFKKI 58 (71)
T ss_dssp HHHHHHSHHHHHH----HTCTHHHH-HHHHHH-HCHHHHHHHHHSH-HHHHHH
T ss_pred HHHHhcCHHHHHH----hCCHHHHH-HHHHHH-HCHHHHHHHHhCH-HHHHHH
Confidence 6678889975443 48997644 455544 5788776666776 566655
No 133
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=92.40 E-value=0.56 Score=34.08 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=47.9
Q ss_pred ceEEEEEeCC---CCeee-ecCCCCcHHHHHHHHHhhhCCCCC------CCceEEEe-CC---e-ecCCC----------
Q psy4259 7 DISDITQNQW---QQTVS-HLDVQEEVKQLKEKIQSEKGSEYL------AEYQKLIY-AG---K-ILSDD---------- 61 (203)
Q Consensus 7 ~m~I~Vk~~~---g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip------~~~qkLi~-~G---k-~L~D~---------- 61 (203)
++.|.|-... ...+. .|-..+||.++|++|....-+..| ++.+.|-| .| + +|.|.
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~w 92 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDW 92 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---C
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcc
Confidence 3555554333 23355 777889999999999977643333 44566666 23 3 35541
Q ss_pred ---CCccccccCCCCEEEEEee
Q psy4259 62 ---QALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 62 ---~tL~~~gI~~~~~i~v~~~ 80 (203)
.||..|+|.+|++|.++-+
T Consensus 93 krLNTL~HY~V~dgatl~l~~~ 114 (117)
T 4e74_A 93 KRLNTLAHYQVPDGSVVALVSK 114 (117)
T ss_dssp CCCCBHHHHTCCTTCEEEEEEC
T ss_pred eEeccccccCCCCCCEEEEEeC
Confidence 2577899999999987643
No 134
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.30 E-value=0.72 Score=30.21 Aligned_cols=64 Identities=8% Similarity=0.154 Sum_probs=42.6
Q ss_pred eEEEEEeCCCCe-ee-ecCCCCcHHHHHHHHHhhhCCCCCC--CceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 8 ISDITQNQWQQT-VS-HLDVQEEVKQLKEKIQSEKGSEYLA--EYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~~-~~-~v~~~~TV~~LK~~I~~~~~~~ip~--~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
|.|+||....-. -. ++ ...||.+|.+.+....+ +.. ....+..+|+.+.+ .+.-+++||.|.++
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~--l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~ 68 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEG--LKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLL 68 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTT--TTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEE
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcC--HHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEE
Confidence 567777654321 23 66 56899999999986543 322 34566678877543 24568899999876
No 135
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.10 E-value=0.41 Score=32.71 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=39.0
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG 55 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G 55 (203)
..++|+|... -++. .|....+..+|.++|.++.+ ++++..+|.|+-
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~--l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLE--LRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTT--CCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhC--CCcceeEEEeeC
Confidence 3466777654 5777 99999999999999999999 999999999964
No 136
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.06 E-value=0.5 Score=32.31 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=49.6
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
.++-..++..||+.++.+.+ +.-+.-.+...+..|+++++|-+-+|+-...|.+.+-
T Consensus 8 hmDI~epL~~Lk~LLe~Rl~--i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 8 AIDINEPIGNLKKLLEPRLQ--CSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEESSSBGGGHHHHSHHHHC--SCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hccccCcHHHHHHHHHHHhc--CCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 56667899999999999999 8888888888888899999999999998888877653
No 137
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.86 E-value=1.6 Score=30.14 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=46.5
Q ss_pred ceEEEEEeCC------C-Ceee-ecCCCCcHHHHHHHHHhhhCCC---C------CCCceEEEeCCeecCCCCCcccccc
Q psy4259 7 DISDITQNQW------Q-QTVS-HLDVQEEVKQLKEKIQSEKGSE---Y------LAEYQKLIYAGKILSDDQALSEYNI 69 (203)
Q Consensus 7 ~m~I~Vk~~~------g-~~~~-~v~~~~TV~~LK~~I~~~~~~~---i------p~~~qkLi~~Gk~L~D~~tL~~~gI 69 (203)
.|+|+||... | .... ++....||.+|.+.+...+..- + ......+..+|+.... +.-+
T Consensus 9 ~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L 83 (98)
T 1vjk_A 9 SVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEEL 83 (98)
T ss_dssp CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBC
T ss_pred cEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCC
Confidence 5888888763 4 3445 7777889999999998764210 0 0234567778887753 5568
Q ss_pred CCCCEEEEE
Q psy4259 70 DESKFIVVM 78 (203)
Q Consensus 70 ~~~~~i~v~ 78 (203)
++||.|.++
T Consensus 84 ~dGDeV~i~ 92 (98)
T 1vjk_A 84 KDGDVVGVF 92 (98)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 899999875
No 138
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=91.70 E-value=0.39 Score=34.64 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=43.4
Q ss_pred CCCCcceEEEEEeCC------C--Ceee-ecCC---CCcHHHHHHHHHhhhCCCCCCCceEEEeC-Ce------ecCCCC
Q psy4259 2 GMLAHDISDITQNQW------Q--QTVS-HLDV---QEEVKQLKEKIQSEKGSEYLAEYQKLIYA-GK------ILSDDQ 62 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~------g--~~~~-~v~~---~~TV~~LK~~I~~~~~~~ip~~~qkLi~~-Gk------~L~D~~ 62 (203)
+|. +.|+|+|+... | +.+. +++. ..||.+|.+.+.+.+. ..+-+|+.. |+ +|-|+.
T Consensus 7 ~~~-~~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~----~~~~~lf~~~g~lr~~i~VlVN~~ 81 (114)
T 1wgk_A 7 GMA-APLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLL----KERPELFIQGDSVRPGILVLINDA 81 (114)
T ss_dssp CCC-CCEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTC----CSCHHHHCCSSSCCSSEEEEESSS
T ss_pred ccC-CCcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHcc----chhHhhCccCCcccCCeEEEECCe
Confidence 444 67999999864 2 2445 6663 3699999999988863 112222211 21 233332
Q ss_pred ---Cc--cccccCCCCEEEEE
Q psy4259 63 ---AL--SEYNIDESKFIVVM 78 (203)
Q Consensus 63 ---tL--~~~gI~~~~~i~v~ 78 (203)
.| .++-+++||.|.++
T Consensus 82 di~~l~gldt~L~dGDeV~ii 102 (114)
T 1wgk_A 82 DWELLGELDYQLQDQDSILFI 102 (114)
T ss_dssp BHHHHCTTTCBCCSSEEEEEE
T ss_pred eeeccCCcCcCCCCCCEEEEe
Confidence 22 34679999998875
No 139
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.50 E-value=0.65 Score=31.88 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=42.3
Q ss_pred cceEEEEEeCCCCeeeecCCC-CcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 6 HDISDITQNQWQQTVSHLDVQ-EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~~v~~~-~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
..|+|+|. |+.+ +++.. .||.+|.+.+ + ++.....+..+|.++..+ ...+..+++||.|.++
T Consensus 19 ~~M~I~vN---Ge~~-el~~~~~Tv~dLL~~L----~--~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 19 GRHMLQLN---GKDV-KWKKDTGTIQDLLASY----Q--LENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIV 81 (87)
T ss_dssp ---CEEET---TEEE-CCSSSCCBHHHHHHHT----T--CTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEE
T ss_pred cceEEEEC---CEEE-ECCCCCCcHHHHHHHh----C--CCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEE
Confidence 35666654 3322 55565 7999998865 5 667778888999988543 4555678999999876
No 140
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=90.02 E-value=0.78 Score=33.77 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeec-----CCC--CCccccccCCCCEEEEEe
Q psy4259 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKIL-----SDD--QALSEYNIDESKFIVVML 79 (203)
Q Consensus 26 ~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L-----~D~--~tL~~~gI~~~~~i~v~~ 79 (203)
..|+.+|-+.|..++| +.. ...++- ..+.| +|. ++|+++||+.|++|.|+=
T Consensus 19 ~~TL~dLV~~l~~~~g--y~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYS--YPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHT--CCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcC--CCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4789998888888888 653 444432 22333 333 799999999999998763
No 141
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=89.02 E-value=2.2 Score=39.38 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=48.3
Q ss_pred ceEEEEEeCCC------Ceee-ecCCCCcHHHHHHHHHhhhCCCCC------CCceEEEeC----Ce-ecCCCC------
Q psy4259 7 DISDITQNQWQ------QTVS-HLDVQEEVKQLKEKIQSEKGSEYL------AEYQKLIYA----GK-ILSDDQ------ 62 (203)
Q Consensus 7 ~m~I~Vk~~~g------~~~~-~v~~~~TV~~LK~~I~~~~~~~ip------~~~qkLi~~----Gk-~L~D~~------ 62 (203)
++.|.|-...| ..+. .|-..+||.++|++|....=+..| ++.+-|-|. |+ +|.|..
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~ 336 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQ 336 (644)
T ss_dssp EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEE
T ss_pred eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceec
Confidence 35666554332 2355 777899999999999966432222 455666662 33 466532
Q ss_pred -------CccccccCCCCEEEEEeec
Q psy4259 63 -------ALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 63 -------tL~~~gI~~~~~i~v~~~k 81 (203)
||+.|+|.+|++|.++-+.
T Consensus 337 ~~wkrLNTL~HY~V~dga~v~L~p~~ 362 (644)
T 3hm6_X 337 GLWRRLNTLQHYKVPDGATVALVPCL 362 (644)
T ss_dssp TTEEECCBTTTTTCCTTCEEEEEEC-
T ss_pred CcceeecchhhcCCCCCcEEEEEecc
Confidence 7899999999999876433
No 142
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=88.78 E-value=0.39 Score=30.73 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhhCHHHHHHHH
Q psy4259 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187 (203)
Q Consensus 135 l~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~n~~~f~~ml 187 (203)
++.+++||.+..+ ++||+++. +++++. +||...+-..+|| .++.++
T Consensus 5 ~~kl~~dPe~~~~----m~dP~~~~-~lq~i~-~NP~~~~~~~~dP-~v~~~~ 50 (62)
T 2lnm_A 5 ISKIMENPDVAMA----FQNPRVQA-ALMECS-ENPMNIMKYQNDK-EVMDVF 50 (62)
T ss_dssp HHHHTTSHHHHHH----TTSHHHHH-HHHHHT-TCGGGHHHHTTCH-HHHHHH
T ss_pred HHHHHcChHHHHH----cCCHHHHH-HHHHHH-HCHHHHHHHHhCh-HHHHHH
Confidence 5678888974333 47888765 465554 5788666666776 454443
No 143
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=88.49 E-value=4.2 Score=28.82 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=54.5
Q ss_pred CCCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE---eCC--eecCCCCCccccccCCCCEE
Q psy4259 2 GMLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI---YAG--KILSDDQALSEYNIDESKFI 75 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi---~~G--k~L~D~~tL~~~gI~~~~~i 75 (203)
|..++++-..|-..+...++ .+..+.|+.+++..++.+.+ +..+.+.|. ++| .+|++++.--.-.+.-+..|
T Consensus 4 ~~~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~--~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRL 81 (104)
T 1wgy_A 4 GSSGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQ--YAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRI 81 (104)
T ss_dssp CCCSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHT--SCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEE
T ss_pred CCCCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhc--CCccceEEEEEccCCcEeecCCcceEEEeeccccceE
Confidence 45667787888877777777 88899999999999999998 776677765 677 34565543222234446677
Q ss_pred EEEee
Q psy4259 76 VVMLS 80 (203)
Q Consensus 76 ~v~~~ 80 (203)
++-.+
T Consensus 82 fvc~k 86 (104)
T 1wgy_A 82 YVYRK 86 (104)
T ss_dssp EEEEC
T ss_pred EEeeh
Confidence 65443
No 144
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.17 E-value=3.6 Score=37.89 Aligned_cols=75 Identities=16% Similarity=0.236 Sum_probs=49.8
Q ss_pred ceEEEEEeCCC---Ceee-ecCCCCcHHHHHHHHHhhhCCCC------CCCceEEEe----CCe-ecCCC----------
Q psy4259 7 DISDITQNQWQ---QTVS-HLDVQEEVKQLKEKIQSEKGSEY------LAEYQKLIY----AGK-ILSDD---------- 61 (203)
Q Consensus 7 ~m~I~Vk~~~g---~~~~-~v~~~~TV~~LK~~I~~~~~~~i------p~~~qkLi~----~Gk-~L~D~---------- 61 (203)
++.|.|-...+ ..+. .|-..+||.++|++|....=+.. .++.+-|-| .|+ +|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~w 312 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDW 312 (627)
T ss_dssp EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTE
T ss_pred eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCce
Confidence 35666654432 3455 77789999999999997753322 345666665 233 35542
Q ss_pred ---CCccccccCCCCEEEEEeec
Q psy4259 62 ---QALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 62 ---~tL~~~gI~~~~~i~v~~~k 81 (203)
.||..|+|.+|++|.++-+.
T Consensus 313 krLNTL~HY~V~Dga~v~L~p~~ 335 (627)
T 3ig3_A 313 KRVNSLAHYQVTDGSLVALVPKQ 335 (627)
T ss_dssp EECCBTTTTTCCTTCEEEEEEC-
T ss_pred eEecchhhcCCCCCceEEEEecc
Confidence 26889999999999876544
No 145
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=87.07 E-value=4.8 Score=26.85 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=38.7
Q ss_pred Ceee-ecCCCCcHHHHHHHHHhhhCCCC-----CC-----CceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 18 QTVS-HLDVQEEVKQLKEKIQSEKGSEY-----LA-----EYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 18 ~~~~-~v~~~~TV~~LK~~I~~~~~~~i-----p~-----~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
+... +++...||.+|.+.+...+.. + .. ....+..+|+.... +.-+++||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~-~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPA-LESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGG-GHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcH-HHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEE
Confidence 4455 777788999999999877531 1 00 12566778888764 4568889999876
No 146
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=85.69 E-value=0.12 Score=32.43 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=13.5
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
+..|+.||+|||.|+
T Consensus 8 e~~Ia~L~smGfsr~ 22 (56)
T 2juj_A 8 SSEIENLMSQGYSYQ 22 (56)
T ss_dssp HHHHHHHHTTTCCHH
T ss_pred hHHHHHHHHcCCCHH
Confidence 789999999999764
No 147
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=85.62 E-value=5.3 Score=32.62 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=52.8
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCC-ceEEEe---CC--eecCCCCCccccccCCCCEEEEEe
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-YQKLIY---AG--KILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-~qkLi~---~G--k~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
+|.|.|...+| ++. .|+.++|+.+|=+.|....| +... -.-|.| +| ..|+.++++.+.+++.+..+.+..
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~--L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIG--LREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHT--CCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcC--CCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 47889999988 678 99999999999999999999 5443 335554 34 347777888887766655554444
Q ss_pred ec
Q psy4259 80 SK 81 (203)
Q Consensus 80 ~k 81 (203)
++
T Consensus 78 r~ 79 (294)
T 1ef1_A 78 RA 79 (294)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 148
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=85.58 E-value=4.9 Score=27.59 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=38.4
Q ss_pred CCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCc-eEEEeCC
Q psy4259 4 LAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEY-QKLIYAG 55 (203)
Q Consensus 4 ~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~-qkLi~~G 55 (203)
++..|+|++. ..|..+. .++++.+..+|.++|...++ +..++ ..|-|..
T Consensus 3 ~~~~vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~--~~~~~~f~lky~D 53 (89)
T 1vd2_A 3 LGSQVRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCS--FDNEQLFTMKWID 53 (89)
T ss_dssp CSSCEEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTT--CCSSCCEEEEECC
T ss_pred CCCeEEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhC--CCCCCeEEEEEEC
Confidence 4456777777 3466777 99999999999999999999 76544 6888864
No 149
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=84.52 E-value=7.4 Score=28.44 Aligned_cols=60 Identities=25% Similarity=0.218 Sum_probs=38.6
Q ss_pred eee-ecCCCCcHHHHHHHHHhhhC--CCCC----CCceEEEeC-C---eecCC----------C----CCccccccCCCC
Q psy4259 19 TVS-HLDVQEEVKQLKEKIQSEKG--SEYL----AEYQKLIYA-G---KILSD----------D----QALSEYNIDESK 73 (203)
Q Consensus 19 ~~~-~v~~~~TV~~LK~~I~~~~~--~~ip----~~~qkLi~~-G---k~L~D----------~----~tL~~~gI~~~~ 73 (203)
.+. .|-..+||.++|++|....- +.+| ++.+.|-|. | .+|.| . .||..|+|.+|+
T Consensus 40 ~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dga 119 (126)
T 3kuz_A 40 NISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGS 119 (126)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTTC
T ss_pred ceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCCC
Confidence 355 77788999999999976531 1133 344555551 2 33333 1 256779999999
Q ss_pred EEEEE
Q psy4259 74 FIVVM 78 (203)
Q Consensus 74 ~i~v~ 78 (203)
+|-++
T Consensus 120 tlal~ 124 (126)
T 3kuz_A 120 TIKVF 124 (126)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99764
No 150
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=84.14 E-value=0.72 Score=33.03 Aligned_cols=68 Identities=13% Similarity=0.155 Sum_probs=40.5
Q ss_pred ceEEEEEeCC------CCeee-ecCC----CCcHHHHHHHHHhhhCCCCCCCceEEEe-CC--e------ecCCCCCc--
Q psy4259 7 DISDITQNQW------QQTVS-HLDV----QEEVKQLKEKIQSEKGSEYLAEYQKLIY-AG--K------ILSDDQAL-- 64 (203)
Q Consensus 7 ~m~I~Vk~~~------g~~~~-~v~~----~~TV~~LK~~I~~~~~~~ip~~~qkLi~-~G--k------~L~D~~tL-- 64 (203)
.|+|+|+... |+... +++. ..||.+|-..+.+.+. ..+-+|+. +| . +|-|+..+
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~----~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~ 79 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV----KERPDLLVDQTGQTLRPGILVLVNSCDAEV 79 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC----CSCHHHHBCSSSSSBCTTEEEEESSSBHHH
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc----ccchhhEecCCCcccCCCeEEEECCeeeec
Confidence 5788887754 34444 6652 2599998888887754 22333321 23 1 34444332
Q ss_pred ---cccccCCCCEEEEE
Q psy4259 65 ---SEYNIDESKFIVVM 78 (203)
Q Consensus 65 ---~~~gI~~~~~i~v~ 78 (203)
.+|-+++||.|.++
T Consensus 80 l~gldt~L~dgD~V~fi 96 (110)
T 2k9x_A 80 VGGMDYVLNDGDTVEFI 96 (110)
T ss_dssp HTSSCCCCCSSCEEEEE
T ss_pred cCCcccCCCCcCEEEEe
Confidence 24679999998775
No 151
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=84.03 E-value=1.8 Score=27.52 Aligned_cols=50 Identities=12% Similarity=0.198 Sum_probs=36.6
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
++....||.+|.+.+ + ++.....+..+|+.+..+ ...+.-+++||.|.++
T Consensus 11 ~~~~~~tv~~ll~~l----~--~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 11 QCAAGQTVHELLEQL----D--QRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLF 60 (66)
T ss_dssp CCCTTCCHHHHHHHH----T--CCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEE
T ss_pred EcCCCCcHHHHHHHc----C--CCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEE
Confidence 555668999998876 5 667777888899888542 2334568889999876
No 152
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=83.65 E-value=5.5 Score=33.85 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=53.5
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC---------eecCCCCCccccccCCCCEEE
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG---------KILSDDQALSEYNIDESKFIV 76 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G---------k~L~D~~tL~~~gI~~~~~i~ 76 (203)
.+.+.|..++|.... .|+.+.|+.+|=+.|....|. ...+-.-|.+.. ..|+-++++.+.++....+++
T Consensus 85 ~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L-~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~ 163 (371)
T 3ivf_A 85 QRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGI-TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLL 163 (371)
T ss_dssp EEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTC-SCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEE
T ss_pred eeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCC-CCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEE
Confidence 477889999999999 999999999999999999993 234445665532 346666777777766666766
Q ss_pred EEe
Q psy4259 77 VML 79 (203)
Q Consensus 77 v~~ 79 (203)
+.+
T Consensus 164 frv 166 (371)
T 3ivf_A 164 LRR 166 (371)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 153
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=83.33 E-value=0.4 Score=31.88 Aligned_cols=9 Identities=44% Similarity=0.770 Sum_probs=4.5
Q ss_pred HHhCCCcHH
Q psy4259 151 VQQNPELLP 159 (203)
Q Consensus 151 i~~nP~~l~ 159 (203)
-.+||++++
T Consensus 37 ~~~NPqL~q 45 (72)
T 1pve_A 37 GRENPQLLQ 45 (72)
T ss_dssp HTTCHHHHH
T ss_pred HhHCHHHHH
Confidence 345666543
No 154
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=83.27 E-value=6.4 Score=26.51 Aligned_cols=69 Identities=4% Similarity=0.028 Sum_probs=41.9
Q ss_pred eEEEEEeCC------CCeee-ecCCCCcHHHHHHHHHhhhCCC---C-C-------CCceEEEeCCeecCCCCCcccccc
Q psy4259 8 ISDITQNQW------QQTVS-HLDVQEEVKQLKEKIQSEKGSE---Y-L-------AEYQKLIYAGKILSDDQALSEYNI 69 (203)
Q Consensus 8 m~I~Vk~~~------g~~~~-~v~~~~TV~~LK~~I~~~~~~~---i-p-------~~~qkLi~~Gk~L~D~~tL~~~gI 69 (203)
|+|+|+... |+... ++ ...||.+|.+.+...++.- + . .....+..+|+...+...+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 556666542 33334 54 3579999999998875310 0 1 0135666788877643222 3468
Q ss_pred CCCCEEEEE
Q psy4259 70 DESKFIVVM 78 (203)
Q Consensus 70 ~~~~~i~v~ 78 (203)
++||.|.++
T Consensus 79 ~~gDeV~i~ 87 (93)
T 3dwg_C 79 ADGDSVTIL 87 (93)
T ss_dssp CTTCEEEEE
T ss_pred CCCCEEEEE
Confidence 999999876
No 155
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=82.92 E-value=0.34 Score=28.50 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=12.9
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 5 e~~i~~L~~MGF~~~ 19 (43)
T 2g3q_A 5 SLAVEELSGMGFTEE 19 (43)
T ss_dssp HHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 678999999999754
No 156
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=82.11 E-value=1.7 Score=28.76 Aligned_cols=15 Identities=13% Similarity=0.315 Sum_probs=13.4
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 30 ee~I~~L~eMGF~r~ 44 (73)
T 1vg5_A 30 EEQIQKLVAMGFDRT 44 (73)
T ss_dssp HHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999764
No 157
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=81.71 E-value=6.6 Score=32.43 Aligned_cols=73 Identities=10% Similarity=0.077 Sum_probs=53.6
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCC-CceEEEe--CC--eecCCCCCccccccCCCCEEEEEe
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLA-EYQKLIY--AG--KILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~-~~qkLi~--~G--k~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
..+.+.|...+| ++. .|+.++|+.+|=+.|....| +.. +-.-|.| +| ..|+.+++|.+.+++.+..+.+..
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~--L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLG--LRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT--CCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhC--CCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 357889999998 788 99999999999999999999 544 3334544 44 347778888887766555544443
Q ss_pred ec
Q psy4259 80 SK 81 (203)
Q Consensus 80 ~k 81 (203)
++
T Consensus 98 r~ 99 (314)
T 1h4r_A 98 LA 99 (314)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 158
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=81.55 E-value=3.3 Score=27.14 Aligned_cols=49 Identities=8% Similarity=0.055 Sum_probs=38.0
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
++ ...||.+|-+. .+ +++...-+.++|.++.- ....+.-+++||.|-++
T Consensus 11 e~-~~~Tl~~LL~~----l~--~~~~~vAV~vNg~iVpr-~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 11 EV-QSASVAALMTE----LD--CTGGHFAVALNYDVVPR-GKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CC-CCSBHHHHHHH----TT--CCSSSCEEEESSSEECH-HHHTTCBCCTTCEEEEE
T ss_pred Ec-CCCcHHHHHHH----cC--CCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEE
Confidence 56 66899988764 57 88888888899998853 34566778999999876
No 159
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=80.90 E-value=4.5 Score=26.14 Aligned_cols=52 Identities=8% Similarity=0.119 Sum_probs=37.6
Q ss_pred eee-ecCCCCcHHHHHHHHHhhhCCCCCCCce--EEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 19 TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQ--KLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 19 ~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~q--kLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
... ++....||.+|.+.+...++. .... .+..+|+....+ .-+++||.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p~---~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYPQ---INNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCGG---GTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCcc---hhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 345 777778999999998876431 1233 677899888653 568899999875
No 160
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.49 E-value=1.4 Score=32.50 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=26.8
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY 53 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~ 53 (203)
.|..+.|+.+||..|+..+| ++++++||-+
T Consensus 61 rv~k~~~~~~~~~~va~~lg--~~~~~~RlW~ 90 (130)
T 2kvr_A 61 KVLKNSSLAEFVQSLSQTMG--FPQDQIRLWP 90 (130)
T ss_dssp ECCTTSBHHHHHHHHHHHHC--CCGGGCEEEE
T ss_pred EEeccCcHHHHHHHHHHHhC--CCcccEEEEE
Confidence 55678999999999999999 9999999854
No 161
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=80.21 E-value=7.3 Score=35.52 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=54.4
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCC-CceEEEeC---C--eecCCCCCccccccCCCCEEEE
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLA-EYQKLIYA---G--KILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~-~~qkLi~~---G--k~L~D~~tL~~~gI~~~~~i~v 77 (203)
+..+.|.|..++| ++. .|+.++|+.+|=..|+...| +.. +-.-|.|. | ..|+.+++|.+.+++.+..+.+
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~Lg--L~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L 78 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIG--LREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQF 78 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHT--CCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEE
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcC--CCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEE
Confidence 3468899999998 678 99999999999999999999 543 34455552 2 4577778888877766665554
Q ss_pred Eeec
Q psy4259 78 MLSK 81 (203)
Q Consensus 78 ~~~k 81 (203)
..++
T Consensus 79 ~FRv 82 (575)
T 2i1j_A 79 KFRA 82 (575)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 162
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=79.85 E-value=7.7 Score=26.39 Aligned_cols=44 Identities=16% Similarity=-0.013 Sum_probs=32.6
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE-eCC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI-YAG 55 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi-~~G 55 (203)
.|+|+|-. ++..|. -|+.+.+..+||.+|..+.. + +...|. |++
T Consensus 12 ~~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk--~--~~~~l~~ykd 57 (85)
T 1ip9_A 12 TTKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRID--T--DNFKLQTKLF 57 (85)
T ss_dssp CEEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHT--S--SCEEEEECCS
T ss_pred ceEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhc--c--cceEEEEecC
Confidence 36666653 356788 99999999999999999998 5 445444 443
No 163
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=79.45 E-value=13 Score=31.36 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=45.8
Q ss_pred EEEEeCCCCee-e-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC-eecCCC-CCccccccCC-CCEEEEE
Q psy4259 10 DITQNQWQQTV-S-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG-KILSDD-QALSEYNIDE-SKFIVVM 78 (203)
Q Consensus 10 I~Vk~~~g~~~-~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G-k~L~D~-~tL~~~gI~~-~~~i~v~ 78 (203)
+.+........ . .+.+..|+.+|++.++..++ ++++.|.|+|.+ +..-+. .....|.-.. ..-|+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTK--IISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVV 384 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHC--CCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEE
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcC--CChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEE
Confidence 34444444443 3 77889999999999999999 999999999998 454444 4455554322 3344443
No 164
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=78.63 E-value=2.9 Score=27.78 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=42.1
Q ss_pred eEEEEEeCCCCeeeecC--CCCcHHHHHHHHHhhhCCCCC-CCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 8 ISDITQNQWQQTVSHLD--VQEEVKQLKEKIQSEKGSEYL-AEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 8 m~I~Vk~~~g~~~~~v~--~~~TV~~LK~~I~~~~~~~ip-~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
|+|+|. |+.+ +++ ...||.+|-+. .+ ++ +...-+.++|.++.-+ ...++-+++||.|-++
T Consensus 1 M~I~vN---Ge~~-e~~~~~~~Tl~~LL~~----l~--~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 1 MNLTVN---GKPS-TVDGAESLNVTELLSA----LK--VAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFL 63 (78)
T ss_dssp CEEEET---TEEE-ECSSCSCEEHHHHHHH----HT--CSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEEC
T ss_pred CEEEEC---CEEE-EcCCCCCCcHHHHHHH----cC--CCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEE
Confidence 444443 4433 555 56899998765 46 77 7777888999998543 4566678899999875
No 165
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=78.14 E-value=0.74 Score=27.98 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=13.0
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 9 ~~~i~~L~~MGF~~~ 23 (49)
T 1ify_A 9 ETMLTEIMSMGYERE 23 (49)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 578999999999764
No 166
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=78.05 E-value=0.58 Score=30.06 Aligned_cols=6 Identities=50% Similarity=1.127 Sum_probs=2.7
Q ss_pred HhCCCc
Q psy4259 152 QQNPEL 157 (203)
Q Consensus 152 ~~nP~~ 157 (203)
.+||++
T Consensus 36 ~~nP~l 41 (61)
T 2f4m_B 36 RENPQL 41 (61)
T ss_dssp HHCHHH
T ss_pred hHCHHH
Confidence 344444
No 167
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=77.67 E-value=8.3 Score=31.80 Aligned_cols=70 Identities=9% Similarity=-0.037 Sum_probs=50.8
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCC-ceEEEeC---C--eecCCCCCccccccCCCCEEEEE
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-YQKLIYA---G--KILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-~qkLi~~---G--k~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
.+.+.|..++|.... +|+...|+.+|=+.|....| +... -.-|.|. | ..|+.++.+.+........+++.
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~--L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN--LLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT--CSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC--CCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 588999999999999 99999999999999999999 5443 3455542 3 45777777776643334455554
No 168
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=76.78 E-value=8.6 Score=26.39 Aligned_cols=68 Identities=10% Similarity=-0.023 Sum_probs=41.8
Q ss_pred eEEEEEeCC------CCeeeecCCCCcHHHHHHHHHhhhCCCCCC-----C----ce-------EEEeCCeecCCCCCcc
Q psy4259 8 ISDITQNQW------QQTVSHLDVQEEVKQLKEKIQSEKGSEYLA-----E----YQ-------KLIYAGKILSDDQALS 65 (203)
Q Consensus 8 m~I~Vk~~~------g~~~~~v~~~~TV~~LK~~I~~~~~~~ip~-----~----~q-------kLi~~Gk~L~D~~tL~ 65 (203)
|+|+|+... |+...+++ ..||.+|.+.+...+.. +.. . .. .+..+|+...... -.
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~-~~tv~~ll~~L~~~~p~-l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~ 80 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS-GEKVIDVLLSLTDKYPA-LKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GL 80 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE-CSSHHHHHHHHHHHCGG-GTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-ST
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe-CCcHHHHHHHHHHHChh-HHHHHhcccccccceeccccccEEEECCEEccccC-CC
Confidence 678888764 32211454 58999999999877421 111 1 23 5667787664322 22
Q ss_pred ccccCCCCEEEEE
Q psy4259 66 EYNIDESKFIVVM 78 (203)
Q Consensus 66 ~~gI~~~~~i~v~ 78 (203)
+.-+++||.|.++
T Consensus 81 ~~~L~~gD~V~i~ 93 (99)
T 2l52_A 81 ETLLKDSDEIGIL 93 (99)
T ss_dssp TSCCCTTEEEEEE
T ss_pred CCCCCCCCEEEEE
Confidence 4468899999875
No 169
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=76.70 E-value=4.1 Score=28.50 Aligned_cols=60 Identities=7% Similarity=0.191 Sum_probs=39.6
Q ss_pred eee-ecCCCCcHHHHHHHHHhhhCCCC-CCC--------ceEEEeCC-eecCC------CCCccccccCCCCEEEEE
Q psy4259 19 TVS-HLDVQEEVKQLKEKIQSEKGSEY-LAE--------YQKLIYAG-KILSD------DQALSEYNIDESKFIVVM 78 (203)
Q Consensus 19 ~~~-~v~~~~TV~~LK~~I~~~~~~~i-p~~--------~qkLi~~G-k~L~D------~~tL~~~gI~~~~~i~v~ 78 (203)
... +|++++|+.+|-+.+.+.-...+ .|+ ...|+..+ ..|+. +++|.++|+.+|+.|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 345 88999999999999998533111 111 23344443 23432 367999999999999873
No 170
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=76.58 E-value=0.66 Score=28.74 Aligned_cols=15 Identities=7% Similarity=-0.044 Sum_probs=13.5
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.||+|||.|+
T Consensus 12 ~~~Ia~Lm~mGFsr~ 26 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFE 26 (52)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 689999999999775
No 171
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=76.50 E-value=6.3 Score=24.75 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=36.8
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
++ ...||.+|.+.+ + ++.....+..+|+.+..+ ...+.-+++||.|.++
T Consensus 10 ~~-~~~tv~~ll~~l----~--~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 10 PL-EGKTLKEVLEEM----G--VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVV 58 (64)
T ss_dssp CC-TTCCHHHHHHHH----T--BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEE
T ss_pred Ec-CCCcHHHHHHHc----C--CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEE
Confidence 55 568999998876 5 666777888899888543 3445578999999876
No 172
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.29 E-value=0.8 Score=28.48 Aligned_cols=15 Identities=0% Similarity=0.096 Sum_probs=13.3
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
+..|+.||+|||.|+
T Consensus 10 e~~I~~L~~lGF~r~ 24 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQ 24 (53)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 678999999999775
No 173
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=74.93 E-value=17 Score=24.75 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=38.3
Q ss_pred eEEEEEeCC-------C-Ceee-ecC--CCCcHHHHHHHHHhhhCCCCCC--------Cc----eEEEeCCeecCCCCCc
Q psy4259 8 ISDITQNQW-------Q-QTVS-HLD--VQEEVKQLKEKIQSEKGSEYLA--------EY----QKLIYAGKILSDDQAL 64 (203)
Q Consensus 8 m~I~Vk~~~-------g-~~~~-~v~--~~~TV~~LK~~I~~~~~~~ip~--------~~----qkLi~~Gk~L~D~~tL 64 (203)
|+|+|+... | +... ++. ...||.+|.+.+.+.++. ... .. ..+..+|+... .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~-~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~ 77 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMIN-NPNDVSIFIEDDSIRPGIITLINDTDWE---LE 77 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCS-SGGGHHHHEETTEECTTEEEEETTEEGG---GG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCch-hhHHHhhhccCCccccCeEEEECCEEcc---cc
Confidence 567776532 2 3344 665 568999999999988641 111 10 11233443211 11
Q ss_pred --cccccCCCCEEEEE
Q psy4259 65 --SEYNIDESKFIVVM 78 (203)
Q Consensus 65 --~~~gI~~~~~i~v~ 78 (203)
.++-+++||.|.++
T Consensus 78 ~~~d~~L~dgDeVa~~ 93 (99)
T 2qjl_A 78 GEKDYILEDGDIISFT 93 (99)
T ss_dssp TGGGCBCCTTCEEEEE
T ss_pred CCCCcCcCCCCEEEEE
Confidence 24568899998875
No 174
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=74.87 E-value=8.1 Score=24.45 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=39.0
Q ss_pred eEEEEEeCCCCeeeecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEe
Q psy4259 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 8 m~I~Vk~~~g~~~~~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
|.|+|...+|+.+ ++....|+.+|-..+....+ ....-...+|++.+-+ +-+++|+.|.++-
T Consensus 1 m~i~i~~p~g~~~-~~~~g~T~~dla~~i~~~l~----~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEIK-RLPQGATALDFAYSLHSDLG----DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCEE-EECTTCBHHHHHHHHCSHHH----HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCEE-EcCCCCcHHHHHHHHhhccc----cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 5677777677643 55567899999887744332 1122234688776543 4455678887764
No 175
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=74.53 E-value=4.4 Score=37.79 Aligned_cols=64 Identities=23% Similarity=0.358 Sum_probs=45.5
Q ss_pred CCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeC-CeecCCCCCcccccc--------CCCCEEEEEeec
Q psy4259 16 WQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYA-GKILSDDQALSEYNI--------DESKFIVVMLSK 81 (203)
Q Consensus 16 ~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~-Gk~L~D~~tL~~~gI--------~~~~~i~v~~~k 81 (203)
..+... .+.++.|+.+||..|+..+| ++++.|.+++. |-.+........|.+ ..++.++++..+
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~--i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTG--IPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSC--CCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhC--CCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 345556 88899999999999999999 99999999987 455555556666532 234455555555
No 176
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=74.46 E-value=0.48 Score=31.22 Aligned_cols=46 Identities=15% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHhhCCHHHHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHH-HhhCHHHHHHHH
Q psy4259 135 LAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL-ISHNQEAFVRML 187 (203)
Q Consensus 135 l~~l~~~P~~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~-i~~n~~~f~~ml 187 (203)
+..|.+||.. +.. ++||+++ .+|++| ++||+.... ..+|| .+++.|
T Consensus 16 ~~kl~~dP~t---~~~-~~DP~~~-~~lq~i-~~NP~~i~~~~~~dP-rv~~~l 62 (71)
T 2llv_A 16 IENLKKNPKT---SEM-MKDPQLV-AKLIGY-KQNPQAIGQDLFTDP-RLMTIM 62 (71)
T ss_dssp HHHHHHSSTT---HHH-HHSCTHH-HHHHHH-HHSCTTHHHHTTTCH-HHHHHH
T ss_pred HHHHHcChHH---HHH-hcCHHHH-HHHHHH-HHCHHHHHHHHhhCc-HHHHHH
Confidence 3555566642 222 3667664 334443 356666655 55665 444443
No 177
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=73.71 E-value=3 Score=29.78 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHhh
Q psy4259 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISH 178 (203)
Q Consensus 144 ~~~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~~ 178 (203)
+.+|++.+..||+....+|.+ ||+|+-++-|
T Consensus 58 L~qmK~~~~~nP~~a~~LL~q----~PQLAyAl~Q 88 (109)
T 2l9b_A 58 LQKFQEWTRAHPEDAASLLEL----CPQLSFVTAE 88 (109)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH----CHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHH----CchHHHHHHH
Confidence 457889999999998888864 9999877654
No 178
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=73.68 E-value=16 Score=25.47 Aligned_cols=72 Identities=11% Similarity=0.050 Sum_probs=52.2
Q ss_pred CCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCC-ceEEE------eCCeecCCCCCcccc----ccCC
Q psy4259 4 LAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAE-YQKLI------YAGKILSDDQALSEY----NIDE 71 (203)
Q Consensus 4 ~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~-~qkLi------~~Gk~L~D~~tL~~~----gI~~ 71 (203)
+....-|+|-..+|.... .|+..+|+.++=+.+..+.+ +..+ .--|+ +--+.++|...|-+. .+..
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~--~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s 83 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAH--ALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGG 83 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSS--CCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSS
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcC--CCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCC
Confidence 444677888888999989 99999999999999999998 4333 33333 123788888765554 4555
Q ss_pred CCEEEE
Q psy4259 72 SKFIVV 77 (203)
Q Consensus 72 ~~~i~v 77 (203)
...+++
T Consensus 84 ~nr~~F 89 (100)
T 1wgr_A 84 DSRFVF 89 (100)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 667765
No 179
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=72.93 E-value=15 Score=26.62 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCC------ceEEE---eCC--eecCCCCCcccccc
Q psy4259 2 GMLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAE------YQKLI---YAG--KILSDDQALSEYNI 69 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~------~qkLi---~~G--k~L~D~~tL~~~gI 69 (203)
|...+++-..|-..+...++ .+..+.|+.+++..++.+.+ +..+ .+.|. ++| .+|++++.--.-.+
T Consensus 4 ~~~~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~--~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL 81 (120)
T 2dhz_A 4 GSSGDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQ--YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTAL 81 (120)
T ss_dssp CSSCCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHST--TCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHS
T ss_pred CCCCCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhc--cccccccccCceEEEEEccCCcEeecCCcceEEEeec
Confidence 44566777778777777777 88899999999999999998 6444 56654 677 34665543222233
Q ss_pred CCCCEEEEE
Q psy4259 70 DESKFIVVM 78 (203)
Q Consensus 70 ~~~~~i~v~ 78 (203)
.-+..|++-
T Consensus 82 ~~NgRLfvc 90 (120)
T 2dhz_A 82 GINSHLFAC 90 (120)
T ss_dssp CSSEEEEEE
T ss_pred cccceEEEe
Confidence 345667654
No 180
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=71.60 E-value=1.4 Score=25.02 Aligned_cols=15 Identities=7% Similarity=0.257 Sum_probs=12.5
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|..|++|||+++
T Consensus 5 ~~~i~~L~~mGf~~~ 19 (40)
T 1z96_A 5 NSKIAQLVSMGFDPL 19 (40)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 568999999999653
No 181
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.25 E-value=1.8 Score=27.79 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.8
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|+.|++|||++.
T Consensus 10 ~~~v~~L~~MGF~~~ 24 (64)
T 1whc_A 10 LTALESLIEMGFPRG 24 (64)
T ss_dssp CCHHHHHHTTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 679999999999653
No 182
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=69.84 E-value=1.6 Score=28.10 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=12.9
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 10 e~~v~~L~~MGF~~~ 24 (64)
T 2crn_A 10 PSLLEPLLAMGFPVH 24 (64)
T ss_dssp CSSHHHHHHTSCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 678999999999754
No 183
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=69.14 E-value=1.3 Score=26.69 Aligned_cols=15 Identities=0% Similarity=0.120 Sum_probs=12.7
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
+..|..||+|||.++
T Consensus 5 e~~I~~L~s~Gf~~~ 19 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQ 19 (46)
T ss_dssp HHHHHHHHHTTBCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 578999999999764
No 184
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.07 E-value=0.89 Score=27.23 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=13.1
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|+.|++|||+++
T Consensus 10 ~~~v~~L~~MGF~~~ 24 (47)
T 2ekk_A 10 QQQLQQLMDMGFTRE 24 (47)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999653
No 185
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=68.93 E-value=24 Score=23.94 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=29.5
Q ss_pred EEEEEeCCCCeee--ecC-CCCcHHHHHHHHHhhhCCCCCCCceEE
Q psy4259 9 SDITQNQWQQTVS--HLD-VQEEVKQLKEKIQSEKGSEYLAEYQKL 51 (203)
Q Consensus 9 ~I~Vk~~~g~~~~--~v~-~~~TV~~LK~~I~~~~~~~ip~~~qkL 51 (203)
.|+.|....+.+. .++ ...+|.+||..|..+.+ +-..+.-|
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~k--l~~~dfDL 51 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREK--LKAADCDL 51 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHT--CCTTTEEE
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhC--CCCCcccE
Confidence 4667777777666 665 56899999999999988 54344433
No 186
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=68.77 E-value=2.5 Score=27.80 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=33.9
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
++....||.+|.+.+ + ++.....+..+|+.+..+ .-+++||.|-++
T Consensus 26 ~~~~~~Tv~dLl~~L----~--~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 26 EWREGMKVRDILRAV----G--FNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCSSCCHHHHHHTT----T--CSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred ECCCCCcHHHHHHHh----C--CCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 556678999987754 5 666677788899988754 457788887654
No 187
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.97 E-value=1.8 Score=27.77 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=13.1
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 10 ~~~I~~L~~MGF~~~ 24 (63)
T 1wji_A 10 EKALKHITEMGFSKE 24 (63)
T ss_dssp HHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999754
No 188
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=65.63 E-value=16 Score=25.57 Aligned_cols=50 Identities=20% Similarity=0.131 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHhhhCCCCCCC--ceEE--EeCCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 27 EEVKQLKEKIQSEKGSEYLAE--YQKL--IYAGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 27 ~TV~~LK~~I~~~~~~~ip~~--~qkL--i~~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
.+..+|+.+...+++ ++.. ..+| -..|..++|+.-+..+ . ++|+.+++.+
T Consensus 37 ~SL~EL~~K~~~~l~--l~~~~~~~~lvLeeDGT~VddEeYF~tL--p-~nT~lmvL~~ 90 (100)
T 1f2r_I 37 SSLEELRSKACELLA--IDKSLTPITLVLAEDGTIVDDDDYFLCL--P-SNTKFVALAC 90 (100)
T ss_dssp SSHHHHHHHHHHHHC--CCGGGCSCEEEESSSCCBCCSSSSSSSS--C-SCCEEEEECS
T ss_pred CCHHHHHHHHHHHhc--cCCCCCceEEEEeeCCcEEechhHhhcC--C-CCCEEEEEcC
Confidence 479999999999999 8653 2444 3469999877655443 2 4455444433
No 189
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=65.51 E-value=4 Score=24.92 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=12.2
Q ss_pred hhhHHHHHhCCc-CC
Q psy4259 110 TATSDSMLKVFF-ER 123 (203)
Q Consensus 110 ~~~v~~~~~mG~-~~ 123 (203)
...|+.|++||| .+
T Consensus 13 ~~~l~~L~~MGF~~~ 27 (52)
T 2jy5_A 13 QQQLEQLSAMGFLNR 27 (52)
T ss_dssp HHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHcCCCCH
Confidence 679999999999 54
No 190
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.34 E-value=2.1 Score=27.26 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=13.1
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|+.|++|||+++
T Consensus 10 ~~~v~~L~~MGF~~~ 24 (63)
T 2dak_A 10 EDCVTTIVSMGFSRD 24 (63)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999754
No 191
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=64.68 E-value=19 Score=23.20 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHhhhCC---CCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 24 DVQEEVKQLKEKIQSEKGS---EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 24 ~~~~TV~~LK~~I~~~~~~---~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
....||.+|.+.+...++. .+......+..+|+.... +.-+++||.|.++
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFF 75 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEE
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEe
Confidence 4667999999998755310 012234567788988753 4468899999876
No 192
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=64.43 E-value=30 Score=23.33 Aligned_cols=58 Identities=9% Similarity=0.192 Sum_probs=46.6
Q ss_pred ecCCCCcHHHHHHHHHhhh-CCCC---CCCceEEEeCC--eecCCCCCccccccCCCCEEEEEe
Q psy4259 22 HLDVQEEVKQLKEKIQSEK-GSEY---LAEYQKLIYAG--KILSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~-~~~i---p~~~qkLi~~G--k~L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
.|+..+|+.++-++++--. |..+ |-.-.++.+.| ..|..+.|+++.||+.-+.|.+..
T Consensus 18 ~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 18 PVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 8899999999999998654 3222 22246778899 999999999999999999998764
No 193
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=63.71 E-value=21 Score=23.39 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.7
Q ss_pred ecCCCCcHHHHHHHHHhhhCCC-----CC----CCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSE-----YL----AEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~-----ip----~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
+++...||.+|.+.+....+.- +. .....+..+|+...... -.+.-+++||.|.++
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 5655689999999998774200 00 13456778888775322 234468999999875
No 194
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=62.95 E-value=38 Score=24.07 Aligned_cols=75 Identities=13% Similarity=0.081 Sum_probs=48.8
Q ss_pred cceEEEEEeCCCCe------ee-ecCCCCcHHHHHHHHHhhhCCCCCCCce-EEEeCCeecCCCCCcccc--ccC-CCCE
Q psy4259 6 HDISDITQNQWQQT------VS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQ-KLIYAGKILSDDQALSEY--NID-ESKF 74 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~------~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~q-kLi~~Gk~L~D~~tL~~~--gI~-~~~~ 74 (203)
+.+-|.|....+.. -. -|+.+.||++|...|....+ +.+++- -|+.++....-+.+++++ ..+ ++.+
T Consensus 27 ~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~--l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGf 104 (117)
T 1eo6_A 27 DRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQ--LPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGF 104 (117)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHT--CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSC
T ss_pred CeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhc--CCCCCcEEEEECCEecCccchHHHHHHHhCCCCCE
Confidence 45667776554321 12 56778899999999999988 776654 444455544556777775 233 3678
Q ss_pred EEEEeecC
Q psy4259 75 IVVMLSKP 82 (203)
Q Consensus 75 i~v~~~k~ 82 (203)
++|..+..
T Consensus 105 Lyi~Ys~~ 112 (117)
T 1eo6_A 105 LYVAYSGE 112 (117)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 88877543
No 195
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=61.81 E-value=18 Score=24.57 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=43.9
Q ss_pred ceEEEEEeCCCCeee-ec-CCCCcHHHHHHHHHhhhCCC--C-CCCceE---EEe-CCeecCCCCCccccccCCCCEEEE
Q psy4259 7 DISDITQNQWQQTVS-HL-DVQEEVKQLKEKIQSEKGSE--Y-LAEYQK---LIY-AGKILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v-~~~~TV~~LK~~I~~~~~~~--i-p~~~qk---Li~-~Gk~L~D~~tL~~~gI~~~~~i~v 77 (203)
.|+|+|+.. +..+. -+ +.+.||.+|-++-...+-+. - +..... |-+ .|-+|+.+..|.+. +.+.++|.-
T Consensus 2 ~MKvtV~fg-~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A 79 (85)
T 2ns5_A 2 EFKVTVCFG-RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVA 79 (85)
T ss_dssp CEEEEEEET-TEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEE
T ss_pred ccEEEEEEC-CEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEE
Confidence 589999964 45555 44 45679999877655444221 2 222222 234 67899888888886 556777754
Q ss_pred Ee
Q psy4259 78 ML 79 (203)
Q Consensus 78 ~~ 79 (203)
+.
T Consensus 80 ~~ 81 (85)
T 2ns5_A 80 VF 81 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 196
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=61.65 E-value=1.5 Score=26.38 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=12.8
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|..|++|||++.
T Consensus 5 ~eaI~rL~~mGF~~~ 19 (47)
T 1dv0_A 5 KEAIERLKALGFPES 19 (47)
T ss_dssp HHHHTTTTTTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 578999999999764
No 197
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=60.79 E-value=2.1 Score=29.10 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=13.3
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||.++
T Consensus 30 ee~I~~Lv~MGF~~~ 44 (83)
T 1veg_A 30 QESINQLVYMGFDTV 44 (83)
T ss_dssp HHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999764
No 198
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=60.50 E-value=34 Score=24.91 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred cceEEEEEeCCCCe-------ee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE-eCCeec-CCCCCcccc--ccC-CC
Q psy4259 6 HDISDITQNQWQQT-------VS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI-YAGKIL-SDDQALSEY--NID-ES 72 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~-------~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi-~~Gk~L-~D~~tL~~~--gI~-~~ 72 (203)
+.+-|.|....+.. -. -|+.+.||++|...|....+ +.+++--.+ |.++.+ .-+.+++++ .-+ ++
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~--l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeD 111 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQ--LNANQAFFLLVNGHSMVSVSTPISEVYESEKDED 111 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHT--CCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTT
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhC--CCCCceEEEEEECCccCCccchHHHHHHHhCCCC
Confidence 45677775443322 12 57788999999999999998 877765545 766555 455777775 233 36
Q ss_pred CEEEEEeec
Q psy4259 73 KFIVVMLSK 81 (203)
Q Consensus 73 ~~i~v~~~k 81 (203)
.++++..+.
T Consensus 112 GfLyv~Ys~ 120 (130)
T 2zjd_A 112 GFLYMVYAS 120 (130)
T ss_dssp SCEEEEEEE
T ss_pred CEEEEEEeC
Confidence 688876643
No 199
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=60.36 E-value=36 Score=22.94 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=47.1
Q ss_pred ecCCCCcHHHHHHHHHhhh-CCCC--CCCceEEEeCCee--cCCCCCccccccCCCCEEEEEe
Q psy4259 22 HLDVQEEVKQLKEKIQSEK-GSEY--LAEYQKLIYAGKI--LSDDQALSEYNIDESKFIVVML 79 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~-~~~i--p~~~qkLi~~Gk~--L~D~~tL~~~gI~~~~~i~v~~ 79 (203)
.|+..+|+.++-++++.-. |..+ .+.-.++.++|.. |.++.|+++.||+.-+.|.++.
T Consensus 20 ~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 20 VVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 8899999999999988654 3222 2336788899988 9999999999999999998764
No 200
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.11 E-value=2.2 Score=28.22 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=13.1
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 10 e~~v~~L~~MGF~~~ 24 (74)
T 2dag_A 10 ESVIIQLVEMGFPMD 24 (74)
T ss_dssp HHHHHHHHHHSCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999653
No 201
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.41 E-value=1.8 Score=27.74 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=12.8
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||++.
T Consensus 20 e~~i~~L~~MGF~~~ 34 (64)
T 2cpw_A 20 GSALDVLLSMGFPRA 34 (64)
T ss_dssp CCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 678999999999654
No 202
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=59.15 E-value=34 Score=23.28 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=47.7
Q ss_pred ceEEEEEeCCC----Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe-CCeec-CCCCCcccc--ccCCCCEEEE
Q psy4259 7 DISDITQNQWQ----QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY-AGKIL-SDDQALSEY--NIDESKFIVV 77 (203)
Q Consensus 7 ~m~I~Vk~~~g----~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~-~Gk~L-~D~~tL~~~--gI~~~~~i~v 77 (203)
.+.|.++..+. ++-. -|+.+.||++|...|..+.. +.+++--.+| +...+ ..+.+++++ ..+++.++++
T Consensus 5 Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~--l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k~DGfLyv 82 (91)
T 4gdk_A 5 KIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLK--LVASEQLFIYVNQSFAPSPDQEVGTLYECFGSDGKLVL 82 (91)
T ss_dssp EEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTT--CCSSSCCEEEETTTBCCCTTCBHHHHHHHHCBTTEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhC--CCCCCeEEEEECCccCCChhhHHHHHHHHhCCCCEEEE
Confidence 45666665432 1223 67889999999999999998 8776554445 55444 445676664 2336788887
Q ss_pred Eeec
Q psy4259 78 MLSK 81 (203)
Q Consensus 78 ~~~k 81 (203)
....
T Consensus 83 ~Ys~ 86 (91)
T 4gdk_A 83 HYCK 86 (91)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7654
No 203
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=59.02 E-value=3.3 Score=25.39 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.7
Q ss_pred hhhHHHHHhCCc-CC
Q psy4259 110 TATSDSMLKVFF-ER 123 (203)
Q Consensus 110 ~~~v~~~~~mG~-~~ 123 (203)
...|+.|++||| .+
T Consensus 12 ~~~l~~L~~MGF~~~ 26 (53)
T 2knz_A 12 QQQLEQLNSMGFINR 26 (53)
T ss_dssp HHHHHHHHTTTCCCH
T ss_pred HHHHHHHHHcCCCCH
Confidence 468999999999 44
No 204
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.94 E-value=42 Score=22.96 Aligned_cols=68 Identities=10% Similarity=0.124 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCeeeecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe--CCeecCCCCCccccccCCCCEEEEEeec
Q psy4259 8 ISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY--AGKILSDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 8 m~I~Vk~~~g~~~~~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~--~Gk~L~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
--++|+..+-....-| -..+..+|+.+...+++ ++....+|.. .|..++|+.-+..+ +++++.+++.+
T Consensus 10 kpfkV~~~~Rs~k~GV-~A~sL~EL~~K~~~~l~--l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~ 79 (91)
T 2eel_A 10 RPFRVSNHDRSSRRGV-MASSLQELISKTLDALV--IATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEK 79 (91)
T ss_dssp EEEEEECTTSCCCEEE-EESSHHHHHHHHHHHTT--CSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEET
T ss_pred CCEEEecCCCCeEEeE-EcCCHHHHHHHHHHHhc--CCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcC
Confidence 3455555443222222 12479999999999999 8655566554 58888777544333 25566555544
No 205
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=56.12 E-value=6 Score=23.57 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCCcHHHHHHH
Q psy4259 145 QQMRTVVQQNPELLPTVLQQ 164 (203)
Q Consensus 145 ~~~r~~i~~nP~~l~~il~~ 164 (203)
+++-.++.+||+++..++.+
T Consensus 20 qqvl~ILksnPqLMAAfIkQ 39 (47)
T 1zoq_C 20 QQVLNILKSNPQLMAAFIKQ 39 (47)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHH
Confidence 34556666677666666654
No 206
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=55.03 E-value=44 Score=22.47 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=48.6
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeC-CeecCCCCCccccccCCCCEEEEEeecC
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYA-GKILSDDQALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~-Gk~L~D~~tL~~~gI~~~~~i~v~~~k~ 82 (203)
.|........+-+..++++. +++..--+|.+ |--+...+|-...-+|.|+.+.++-+.+
T Consensus 29 sVPE~~PftAVlkfaaEeF~--vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 29 SVPESTPFTAVLKFAAEEFK--VPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEETTSBHHHHHHHHHHHTT--CCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred ecCccCchHHHHHHHHHHcC--CCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 88888888888889999999 99988888876 6556777888888899999999876543
No 207
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.94 E-value=3 Score=27.47 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=13.2
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
...|+.|++|||+++
T Consensus 30 ~~~v~~L~~MGF~~~ 44 (73)
T 1wiv_A 30 QSSVDTLLSFGFAED 44 (73)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999754
No 208
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=54.74 E-value=29 Score=24.92 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=50.0
Q ss_pred cceEEEEEeCCCCee------e-ecCCCCcHHHHHHHHHhhhCCCCCCCce-EEEeCCeecCCCCCcccc--ccC-CCCE
Q psy4259 6 HDISDITQNQWQQTV------S-HLDVQEEVKQLKEKIQSEKGSEYLAEYQ-KLIYAGKILSDDQALSEY--NID-ESKF 74 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~------~-~v~~~~TV~~LK~~I~~~~~~~ip~~~q-kLi~~Gk~L~D~~tL~~~--gI~-~~~~ 74 (203)
+.+-|+|....+... . -|+.+.||++|...|..... +.+++- -|..++....-+.+++++ .-+ ++.+
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~--l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGf 107 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQ--LEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGF 107 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHT--CCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSC
T ss_pred CeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhC--CCccceEEEEECCcCCCccchHHHHHHHcCCCCCe
Confidence 446677755443321 2 57789999999999999998 777764 444467766667787775 233 3568
Q ss_pred EEEEeec
Q psy4259 75 IVVMLSK 81 (203)
Q Consensus 75 i~v~~~k 81 (203)
|+|..+.
T Consensus 108 Lyv~Ys~ 114 (119)
T 3h9d_A 108 LYMKYSG 114 (119)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 8877654
No 209
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.47 E-value=3.1 Score=28.21 Aligned_cols=15 Identities=7% Similarity=0.220 Sum_probs=13.2
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|+.|++|||.+.
T Consensus 30 e~~v~~L~~MGF~~~ 44 (84)
T 1vek_A 30 EEIVAQLVSMGFSQL 44 (84)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999753
No 210
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.48 E-value=3.3 Score=28.05 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=13.1
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|+.|++|||++.
T Consensus 30 e~~i~~L~~MGF~~~ 44 (83)
T 2dai_A 30 EAALRQLTEMGFPEN 44 (83)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 789999999999753
No 211
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=53.01 E-value=8.6 Score=25.42 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=11.6
Q ss_pred hhhHHHHHhCCcC
Q psy4259 110 TATSDSMLKVFFE 122 (203)
Q Consensus 110 ~~~v~~~~~mG~~ 122 (203)
+..|+.|++|||.
T Consensus 30 e~qi~qL~eMGF~ 42 (74)
T 1vej_A 30 QQELEELKALGFA 42 (74)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 6799999999993
No 212
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=52.66 E-value=52 Score=22.39 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=47.9
Q ss_pred CcceEEEEEeCCCC----eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeec-CCCCCcccc--ccCCCCEEE
Q psy4259 5 AHDISDITQNQWQQ----TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKIL-SDDQALSEY--NIDESKFIV 76 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~----~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L-~D~~tL~~~--gI~~~~~i~ 76 (203)
+..+.|.++..+.- .-. -|+.+.||++|...|.++.+ + +..-|.-+...+ ..+.+++++ ..+++.+++
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~--l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Ly 81 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLK--M--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELI 81 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHT--C--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEE
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhC--C--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEE
Confidence 34566776665431 122 68899999999999999998 7 556555566543 445677664 234677888
Q ss_pred EEeec
Q psy4259 77 VMLSK 81 (203)
Q Consensus 77 v~~~k 81 (203)
+....
T Consensus 82 v~Ys~ 86 (91)
T 3w1s_C 82 VSYCA 86 (91)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77644
No 213
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=52.57 E-value=26 Score=25.43 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=49.5
Q ss_pred cceEEEEEeCCCCe------ee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe-CCeecCCCCCcccc--ccC-CCCE
Q psy4259 6 HDISDITQNQWQQT------VS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY-AGKILSDDQALSEY--NID-ESKF 74 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~------~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~-~Gk~L~D~~tL~~~--gI~-~~~~ 74 (203)
+.+-|+|....+.. -. -|+.+.||++|...|..... +.+++--.+| ++....-+.+++++ .-+ ++.+
T Consensus 35 ~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~--L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGf 112 (125)
T 3m95_A 35 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIH--LRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFF 112 (125)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTT--CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSC
T ss_pred CeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcC--CCccccEEEEECCccCCccchHHHHHHHcCCCCCe
Confidence 45667775544322 12 57789999999999999998 7777644444 55444566777775 233 4668
Q ss_pred EEEEeecC
Q psy4259 75 IVVMLSKP 82 (203)
Q Consensus 75 i~v~~~k~ 82 (203)
|+|..+..
T Consensus 113 LY~~Ys~e 120 (125)
T 3m95_A 113 LYIAFSDE 120 (125)
T ss_dssp EEEEEESS
T ss_pred EEEEecCc
Confidence 88776543
No 214
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=51.69 E-value=7.6 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=12.8
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+++.++++|||..+
T Consensus 11 ~~al~qMl~MGF~ne 25 (52)
T 1q02_A 11 IESLSQMLSMGFSDE 25 (52)
T ss_dssp HHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHcCCCcc
Confidence 578999999999754
No 215
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=51.47 E-value=3.9 Score=35.33 Aligned_cols=34 Identities=21% Similarity=0.536 Sum_probs=16.1
Q ss_pred CCHHH-HHHHHHH-HhCCCcHHHHHHHHhhcCHHHHHHHh
Q psy4259 140 TQPQF-QQMRTVV-QQNPELLPTVLQQIGQSNPALLELIS 177 (203)
Q Consensus 140 ~~P~~-~~~r~~i-~~nP~~l~~il~~l~~~nP~l~~~i~ 177 (203)
+||++ +.+.|+| ++||++++. |.++.-++.++|.
T Consensus 255 ~nP~~l~~~lq~l~~~nP~l~~~----I~~n~~~Fl~~l~ 290 (368)
T 1oqy_A 255 QNPALLPALLQQLGQENPQLLQQ----ISRHQEQFIQMLN 290 (368)
T ss_dssp TCTTHHHHHHTTTTTTCHHHHHH----HHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHhhCHHHHHH----HHHCHHHHHHHHc
Confidence 57762 3333332 467777433 2233333455654
No 216
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=51.28 E-value=49 Score=21.70 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=41.4
Q ss_pred EEEEEeCCCCeeeecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCeecCCCCCccccccCCCCEEEEEee
Q psy4259 9 SDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80 (203)
Q Consensus 9 ~I~Vk~~~g~~~~~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~~~ 80 (203)
+|.|.+.+|..+ +++...|+.|+=..|....+. .-.--..+|+...- ++-+++|+.|.++..
T Consensus 7 ~i~v~tP~G~~~-~lp~GaT~~D~A~~Ih~~lg~----~~v~AkVNG~~v~L-----~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDVI-SLPIGSTVIDFAYAIHSAVGN----RMIGAKVDGRIVPI-----DYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCEE-EEETTCBHHHHHHHHCHHHHH----TEEEEEETTEEECT-----TCBCCTTCBEEEEEC
T ss_pred eEEEECCCCCEE-EecCCCCHHHHHHHhhhhhhc----ceEEEEECCEEcCC-----CcccCCCCEEEEEcc
Confidence 577888888654 556677999998888776652 11223347776643 345778999987643
No 217
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=50.83 E-value=24 Score=24.78 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=46.9
Q ss_pred cceEEEEEeCCCCe------ee-ecCCCCcHHHHHHHHHhhhCCCCCCCce-EEEeCCeecCCCCCcccc--ccC-CCCE
Q psy4259 6 HDISDITQNQWQQT------VS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQ-KLIYAGKILSDDQALSEY--NID-ESKF 74 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~------~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~q-kLi~~Gk~L~D~~tL~~~--gI~-~~~~ 74 (203)
+.+-|.|....+.. -. -|+.+.||++|...|....+ +.+++- -|+.++....-+.+++++ ..+ ++.+
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~--l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGf 103 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIH--LRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYF 103 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTT--CCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSC
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhc--CCCCCcEEEEECCEecCccChHHHHHHHcCCCCCE
Confidence 45667777654322 12 56778899999999999988 776654 554455544556777775 233 3668
Q ss_pred EEEEee
Q psy4259 75 IVVMLS 80 (203)
Q Consensus 75 i~v~~~ 80 (203)
++|..+
T Consensus 104 Lyi~Ys 109 (110)
T 2r2q_A 104 LYVAYS 109 (110)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 877653
No 218
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=50.10 E-value=11 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.424 Sum_probs=21.7
Q ss_pred HHhhCCHHH-HHHH-HHHHhCCCcHHHHHHHHhhcCHH-HHHHHh
Q psy4259 136 AFLRTQPQF-QQMR-TVVQQNPELLPTVLQQIGQSNPA-LLELIS 177 (203)
Q Consensus 136 ~~l~~~P~~-~~~r-~~i~~nP~~l~~il~~l~~~nP~-l~~~i~ 177 (203)
+.+.+||++ +.+. ++-++||++++.|. .||+ +.++|.
T Consensus 40 q~vqqNPqlL~~lLqqig~~NPqL~qlI~-----qNqe~Fl~mLn 79 (171)
T 2qsf_X 40 QVVSGNPEALAPLLENISARYPQLREHIM-----ANPEVFVSMLL 79 (171)
T ss_dssp HHHHTCGGGHHHHHHHHHHHCTTHHHHHH-----HCHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHhhCHHHHHHHH-----HCHHHHHHHHh
Confidence 345589973 3333 33458999865433 3676 556664
No 219
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=49.49 E-value=11 Score=34.05 Aligned_cols=29 Identities=7% Similarity=0.208 Sum_probs=26.3
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI 52 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi 52 (203)
.|..+.|+.+||+.|++..| ++++++||-
T Consensus 41 rv~k~~~~~~l~~~va~~lg--~~~~~~RlW 69 (530)
T 2ylm_A 41 KVLKNSSLAEFVQSLSQTMG--FPQDQIRLW 69 (530)
T ss_dssp EEETTSBHHHHHHHHHHHHT--SCGGGEEEE
T ss_pred EEcCcCCHHHHHHHHHHHhC--cCcccEEEE
Confidence 56678999999999999999 999999984
No 220
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.47 E-value=4.1 Score=27.68 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=12.7
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|+.|++|||+++
T Consensus 22 ~~~I~qL~~MGF~~~ 36 (85)
T 2dkl_A 22 SRLIKQLTDMGFPRE 36 (85)
T ss_dssp HHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 678999999999653
No 221
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=48.94 E-value=55 Score=22.47 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=46.8
Q ss_pred ceEEEEEeCCC----Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCCe-ec-CCCCCcccc--ccCCCCEEEE
Q psy4259 7 DISDITQNQWQ----QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGK-IL-SDDQALSEY--NIDESKFIVV 77 (203)
Q Consensus 7 ~m~I~Vk~~~g----~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~Gk-~L-~D~~tL~~~--gI~~~~~i~v 77 (203)
.+.|.++.... ++-. -|+.+.||++|...|.++.. +. ..-| |-+. .+ ..+.+++++ ..+++.++++
T Consensus 13 KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~--l~--alFl-yvn~~~~Ps~d~~m~~LY~~~kdDGfLyi 87 (96)
T 1wz3_A 13 KIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH--SD--SLFV-YVNSAFSPNPDESVIDLYNNFGFDGKLVV 87 (96)
T ss_dssp EEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT--CS--SCEE-EEEEEECCCTTSBHHHHHHHHCBTTBEEE
T ss_pred eEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcC--Cc--eEEE-EECCcccCChhhHHHHHHHHhCCCCEEEE
Confidence 57777776533 1122 67889999999999999998 76 4555 5444 43 456777665 3344678887
Q ss_pred Eeec
Q psy4259 78 MLSK 81 (203)
Q Consensus 78 ~~~k 81 (203)
..+.
T Consensus 88 ~Ys~ 91 (96)
T 1wz3_A 88 NYAC 91 (96)
T ss_dssp EEES
T ss_pred EEeC
Confidence 7654
No 222
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=47.20 E-value=8.2 Score=22.90 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=11.2
Q ss_pred hhhHHHHHhCCcC
Q psy4259 110 TATSDSMLKVFFE 122 (203)
Q Consensus 110 ~~~v~~~~~mG~~ 122 (203)
+..|+.|++|||.
T Consensus 8 ~~~i~~L~~MGF~ 20 (46)
T 2bwb_A 8 EHQLRQLNDMGFF 20 (46)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 5689999999994
No 223
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=46.06 E-value=56 Score=22.42 Aligned_cols=56 Identities=13% Similarity=-0.043 Sum_probs=38.7
Q ss_pred Ceee-ecCCCCcHHHHHHHHHhhhCC-CCCCCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 18 QTVS-HLDVQEEVKQLKEKIQSEKGS-EYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 18 ~~~~-~v~~~~TV~~LK~~I~~~~~~-~ip~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
..+. ++....||.++-+...-.... ++......+-.+|+... .+.-+++||.|-+.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 3445 888999999998876542220 14445678888888887 34457789999875
No 224
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=45.12 E-value=36 Score=24.07 Aligned_cols=66 Identities=9% Similarity=-0.025 Sum_probs=43.2
Q ss_pred CcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCC------CCCCceEEEe---CCee--cCCC-CCccccccC
Q psy4259 5 AHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSE------YLAEYQKLIY---AGKI--LSDD-QALSEYNID 70 (203)
Q Consensus 5 ~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~------ip~~~qkLi~---~Gk~--L~D~-~tL~~~gI~ 70 (203)
++.+.|.+=...|-.+. +++.+.|+.++|+.+.++..+- ..++.-.+.. .|.+ |.|+ +-|-++..-
T Consensus 17 ~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 17 PPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp CSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred CCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 34577777778898888 9999999999999998874420 1222222221 2433 6555 668777654
No 225
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=40.06 E-value=14 Score=28.46 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHh
Q psy4259 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELIS 177 (203)
Q Consensus 146 ~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~ 177 (203)
+|+.++..||+....+|. .||+|+-++-
T Consensus 65 qmK~l~~~nP~~ar~LL~----~nPQLayAl~ 92 (174)
T 4eba_G 65 VIQHFCKDDKETFVALLE----EAPQLSYAIA 92 (174)
T ss_dssp HHHHGGGC--CCHHHHHH----SCTHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHH----HCchHHHHHH
Confidence 455556666666555553 4666665443
No 226
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=39.58 E-value=1e+02 Score=21.94 Aligned_cols=74 Identities=15% Similarity=0.144 Sum_probs=48.2
Q ss_pred cceEEEEEeCCCCee------e-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe-CCeecCCCCCcccc--ccC-CCCE
Q psy4259 6 HDISDITQNQWQQTV------S-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY-AGKILSDDQALSEY--NID-ESKF 74 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~------~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~-~Gk~L~D~~tL~~~--gI~-~~~~ 74 (203)
+.+-|+|....+... . -|+.+.||++|...|..... +.+++--.+| ++....-+.+++++ .-+ ++.+
T Consensus 29 ~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~--l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGf 106 (118)
T 3rui_B 29 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIM--LPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGF 106 (118)
T ss_dssp SEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTT--CCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSC
T ss_pred CceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhC--cCCCccEEEEECCccCCccchHHHHHHHcCCCCCe
Confidence 446667755443221 2 57789999999999999998 7776544444 55444556777765 233 3558
Q ss_pred EEEEeec
Q psy4259 75 IVVMLSK 81 (203)
Q Consensus 75 i~v~~~k 81 (203)
|+|..+.
T Consensus 107 Lyv~Ys~ 113 (118)
T 3rui_B 107 LYVTYSG 113 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 8877654
No 227
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.82 E-value=10 Score=23.31 Aligned_cols=14 Identities=7% Similarity=0.062 Sum_probs=12.0
Q ss_pred hhhHHHHHhCCcCC
Q psy4259 110 TATSDSMLKVFFER 123 (203)
Q Consensus 110 ~~~v~~~~~mG~~~ 123 (203)
...|+.|++|||.+
T Consensus 10 ~~~l~~L~~MGF~d 23 (54)
T 2dah_A 10 QVQLEQLRSMGFLN 23 (54)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCCc
Confidence 67899999999953
No 228
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=37.98 E-value=29 Score=27.63 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=24.6
Q ss_pred HHHHhhcCHHHHHHHhhCHHHHHHHHcCCcccc
Q psy4259 162 LQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194 (203)
Q Consensus 162 l~~l~~~nP~l~~~i~~n~~~f~~ml~~p~~~~ 194 (203)
|..|+..||+|+..+-. +|..|+.+|++.+
T Consensus 131 LeeIaranP~l~~~v~r---di~smltskd~~D 160 (253)
T 2db0_A 131 LEEIAKANPMLMASIVR---DFMSMLSSKNRED 160 (253)
T ss_dssp HHHHHHHCHHHHHHHHH---HHHHHTSCSSHHH
T ss_pred HHHHHHhChHHHHHHHH---HHHHHhcCCChHH
Confidence 56688999999998874 7899999888665
No 229
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=37.80 E-value=1.1e+02 Score=21.91 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=44.7
Q ss_pred ee-ecCCCCcHHHHHHHHHhh-hCCC-----CCCCceEEEeCCeecC--CCCCccccccCCCCEEEEE
Q psy4259 20 VS-HLDVQEEVKQLKEKIQSE-KGSE-----YLAEYQKLIYAGKILS--DDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 20 ~~-~v~~~~TV~~LK~~I~~~-~~~~-----ip~~~qkLi~~Gk~L~--D~~tL~~~gI~~~~~i~v~ 78 (203)
+. -|+++.+.++|-+.+-.. ++.+ +.-+......+|+... .+++|.+.||...+.|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 44 789999999998766543 2311 5566677888999986 3489999999999988774
No 230
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=37.75 E-value=46 Score=29.69 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=43.0
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCC--CceEEEeC--C--eecCCCCCc
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLA--EYQKLIYA--G--KILSDDQAL 64 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~--~~qkLi~~--G--k~L~D~~tL 64 (203)
.+.+.|...+|.... .|+...|+.+|-+.|....| +.. +..-|.+. + +.|++++.+
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lg--L~e~~~~FgL~~~~~~~~~~L~~~~~i 278 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLA--MEDSRNMFALFEYNGHVDKAIESRTVV 278 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTT--CTTCCSEEEEEEESSSCEEECCTTSBH
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcC--CCCCCCceEEEEEeCCeeEecCCCCch
Confidence 578999999999999 99999999999999999999 753 34455543 2 235555443
No 231
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=37.48 E-value=19 Score=32.44 Aligned_cols=71 Identities=11% Similarity=0.227 Sum_probs=53.5
Q ss_pred ceEEEEEeCC--CCeee-----ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeC----C--eecC-CCCCcccc--ccC
Q psy4259 7 DISDITQNQW--QQTVS-----HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYA----G--KILS-DDQALSEY--NID 70 (203)
Q Consensus 7 ~m~I~Vk~~~--g~~~~-----~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~----G--k~L~-D~~tL~~~--gI~ 70 (203)
.+-|++|--+ .+++. -|+.+.+|.+|-..|.+..| +|++.--.+|. + ..|+ .+.|+.++ .+.
T Consensus 130 ~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g--~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~ 207 (530)
T 2ylm_A 130 DVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAG--FIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELM 207 (530)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHT--CCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCC
T ss_pred cEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcC--CCCCCceEEEEecCCCceeEcccccccHHHHHhccc
Confidence 4677777654 23322 66889999999999999999 99886655564 2 4467 46899999 999
Q ss_pred CCCEEEEEe
Q psy4259 71 ESKFIVVML 79 (203)
Q Consensus 71 ~~~~i~v~~ 79 (203)
+|++|.+=.
T Consensus 208 ~GdII~fQ~ 216 (530)
T 2ylm_A 208 DGDIIVFQK 216 (530)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEEEe
Confidence 999997754
No 232
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=37.12 E-value=58 Score=26.37 Aligned_cols=73 Identities=7% Similarity=0.027 Sum_probs=43.4
Q ss_pred CCCcceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe----C---CeecCCCCCcccc--ccCCC
Q psy4259 3 MLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY----A---GKILSDDQALSEY--NIDES 72 (203)
Q Consensus 3 ~~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~----~---Gk~L~D~~tL~~~--gI~~~ 72 (203)
|.+...-|+|-..+|.... .|+++.|+.+|=+.+..+.+ +..+.--.++ . -+.|+|...+-+. ....+
T Consensus 4 ~~~~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~--~~~~~~W~l~E~~~~l~lER~ledhE~V~ev~~~~~s~ 81 (256)
T 3hk0_A 4 MAAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSH--SVDDNSWTLVEHHPHLGLERCLEDHELVVQVESTMASE 81 (256)
T ss_dssp ----CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---------EEEEEEETTTTEEEECCTTSBHHHHHHTCCSS
T ss_pred CCCCceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcC--CCCCCCEEEEEECCCcccccccccchhHHHHHhccCCC
Confidence 4555666777778898888 99999999999988888765 4333332222 1 2778888765543 23334
Q ss_pred CEEEE
Q psy4259 73 KFIVV 77 (203)
Q Consensus 73 ~~i~v 77 (203)
+.+++
T Consensus 82 ~~l~f 86 (256)
T 3hk0_A 82 SKFLF 86 (256)
T ss_dssp CEEEE
T ss_pred ceEEE
Confidence 45543
No 233
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=36.92 E-value=48 Score=25.05 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=36.6
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCC---------CCceEEEeCCeecCCCCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYL---------AEYQKLIYAGKILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip---------~~~qkLi~~Gk~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
+++. .||.+|.+.+...+.. +. .....+..+|+......- .+.-+++||.|.++
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~-l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~ 81 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPA-LKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLF 81 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGG-GHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEE
T ss_pred EECC-CcHHHHHHHHHhhChh-hhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEE
Confidence 5655 8999999999877421 11 134567788888765322 34568999999876
No 234
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=36.45 E-value=36 Score=25.34 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHhhhCCCCCCCc----eEEE-----------------eCCeec-CCCCCccccccCCCCEEEEEeec
Q psy4259 24 DVQEEVKQLKEKIQSEKGSEYLAEY----QKLI-----------------YAGKIL-SDDQALSEYNIDESKFIVVMLSK 81 (203)
Q Consensus 24 ~~~~TV~~LK~~I~~~~~~~ip~~~----qkLi-----------------~~Gk~L-~D~~tL~~~gI~~~~~i~v~~~k 81 (203)
..++|+.+|-..|.+.... .+... .+++ +.|+.- +|++||.+++..-||.|.|.+.-
T Consensus 61 W~daTLrEL~~Lvk~~~p~-ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidvaI~p 139 (143)
T 4a6q_A 61 WMDATLKELTSLVKEVYPE-ARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITP 139 (143)
T ss_dssp CTTCBHHHHHHHHHHHCGG-GGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHhCcc-ccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEEEEeC
Confidence 5789999999988877542 11111 1222 333333 46699999999999999987643
No 235
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=36.11 E-value=42 Score=23.16 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=44.6
Q ss_pred cceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEE--eCC--eecCCCCC----ccccccCCCCEEE
Q psy4259 6 HDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLI--YAG--KILSDDQA----LSEYNIDESKFIV 76 (203)
Q Consensus 6 ~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi--~~G--k~L~D~~t----L~~~gI~~~~~i~ 76 (203)
..|.|+|=..+...+. -|.+..|-.|+-..+....| - +.+..|+ +.| +.|.++.. |...|-. .+.|.
T Consensus 6 ~~mel~Vwv~g~er~VsGvT~~TTC~DVV~aL~~~~G--~-~~~y~LvE~wRg~ER~L~~~~r~l~~l~~wG~~-~~eV~ 81 (95)
T 2cs4_A 6 SGMELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIG--R-TGRYTLIEKWRDTERHLAPHENPIISLNKWGQY-ASDVQ 81 (95)
T ss_dssp CCBCCCEEETTEEECCSSBCSSSCHHHHHHHHHHHHS--C-CSEEEEEEEETTEEEECCSSSCHHHHHHTTGGG-STTCE
T ss_pred CCCEEEEEECCceeEEECCCCCCcHHHHHHHHHhccC--C-CccEEEEEecCCCeecCCCcccHHHHHHHhCcC-CCceE
Confidence 3566666543334445 99999999999998888888 3 4555665 566 66875533 4555632 23344
Q ss_pred EEeec
Q psy4259 77 VMLSK 81 (203)
Q Consensus 77 v~~~k 81 (203)
+++++
T Consensus 82 F~Lr~ 86 (95)
T 2cs4_A 82 LILRR 86 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 236
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=36.10 E-value=1.1e+02 Score=21.31 Aligned_cols=71 Identities=6% Similarity=0.057 Sum_probs=53.0
Q ss_pred ceEEEEEeCCC---Ceee-ecCCCCcHHHHHHHHHhhhCCCCCC--CceEEEeCC---eecCCCCCccccccCCCCEEEE
Q psy4259 7 DISDITQNQWQ---QTVS-HLDVQEEVKQLKEKIQSEKGSEYLA--EYQKLIYAG---KILSDDQALSEYNIDESKFIVV 77 (203)
Q Consensus 7 ~m~I~Vk~~~g---~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~--~~qkLi~~G---k~L~D~~tL~~~gI~~~~~i~v 77 (203)
+++|+|...+. ..++ .|..+.-|+-|.-+|-++.. ++. +.--|-+-- ..|+-..||..|||..+..+++
T Consensus 19 eL~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~--i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~f 96 (102)
T 2kmc_A 19 ELVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMN--IAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLF 96 (102)
T ss_dssp EEEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHC--CSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEE
T ss_pred EEEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcc--cccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeec
Confidence 57788887554 4566 99888999999999998876 433 344444432 3567778999999999999988
Q ss_pred Ee
Q psy4259 78 ML 79 (203)
Q Consensus 78 ~~ 79 (203)
.-
T Consensus 97 tp 98 (102)
T 2kmc_A 97 TP 98 (102)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 237
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=35.66 E-value=11 Score=23.62 Aligned_cols=11 Identities=45% Similarity=0.609 Sum_probs=5.7
Q ss_pred HhhcCHHHHHH
Q psy4259 165 IGQSNPALLEL 175 (203)
Q Consensus 165 l~~~nP~l~~~ 175 (203)
|-.+||+|..+
T Consensus 32 ILksNPqLMAA 42 (59)
T 1kbh_B 32 ILKSNPQLMAA 42 (59)
T ss_dssp HHTTSHHHHHH
T ss_pred HHHhCHHHHHH
Confidence 44456655544
No 238
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=35.60 E-value=69 Score=21.84 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=33.5
Q ss_pred Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCce-EEEeCCeec
Q psy4259 18 QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQ-KLIYAGKIL 58 (203)
Q Consensus 18 ~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~q-kLi~~Gk~L 58 (203)
..+. .|+...|=.++|+.|+..++ +.+... .++..||.=
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~--VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFE--VEVEVVNTLVVKGKVK 68 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSC--CCCCEEEEEEECCCBC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcC--CceEEEEEEEeCCcee
Confidence 5677 99999999999999999999 988888 467788643
No 239
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=34.75 E-value=52 Score=22.81 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=27.2
Q ss_pred ceEEEEEeCC-------CCeee-ecCCCCcHHHHHHHHHhhhC
Q psy4259 7 DISDITQNQW-------QQTVS-HLDVQEEVKQLKEKIQSEKG 41 (203)
Q Consensus 7 ~m~I~Vk~~~-------g~~~~-~v~~~~TV~~LK~~I~~~~~ 41 (203)
.++|+|..-+ +..+. -|+++.+..+|..+|..+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~ 47 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKIS 47 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHc
Confidence 3566666432 44577 99999999999999999988
No 240
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=34.70 E-value=35 Score=22.86 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=25.1
Q ss_pred HHHHHHHHH-----hCCCcHHHHHHHHhhcCHHHHHHHhh
Q psy4259 144 FQQMRTVVQ-----QNPELLPTVLQQIGQSNPALLELISH 178 (203)
Q Consensus 144 ~~~~r~~i~-----~nP~~l~~il~~l~~~nP~l~~~i~~ 178 (203)
++.+++.++ .||..+.+--++|.+-+-.|+.++.+
T Consensus 38 i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~ 77 (90)
T 4b6x_A 38 VNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRR 77 (90)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444555544 68888888778888888888887654
No 241
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.28 E-value=5.5 Score=24.74 Aligned_cols=15 Identities=0% Similarity=-0.002 Sum_probs=12.4
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
...++.|++|||+++
T Consensus 10 ~qmlq~L~eMGFd~e 24 (54)
T 2cos_A 10 RQMLQELVNAGCDQE 24 (54)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 567999999999754
No 242
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=34.01 E-value=24 Score=26.50 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=25.2
Q ss_pred CCCCcceEEEEEeCCCCeee-ecCCCC---cHHHHHHH
Q psy4259 2 GMLAHDISDITQNQWQQTVS-HLDVQE---EVKQLKEK 35 (203)
Q Consensus 2 ~~~~~~m~I~Vk~~~g~~~~-~v~~~~---TV~~LK~~ 35 (203)
+.....|+|.+. .+++++. ++..+. |+.+|.++
T Consensus 24 ~~~~~~~~I~i~-~~~~~~~a~L~D~~aP~Ta~~f~~~ 60 (153)
T 2nnz_A 24 GERGVEMRLRIR-FESAECEVELYEEWAPETVRAIADA 60 (153)
T ss_dssp CCCSSCCCEEEE-ETTEEEEECCCTTSCHHHHHHHHHT
T ss_pred ccccCCeEEEEE-ECCEEEEEEEcCCCCHHHHHHHHHh
Confidence 334446888887 4678888 999999 99999875
No 243
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=33.22 E-value=95 Score=28.59 Aligned_cols=46 Identities=11% Similarity=-0.145 Sum_probs=38.6
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEe
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY 53 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~ 53 (203)
.|.+.|..++|.... +|+...|+.+|-+.|....|. ...+..-|.+
T Consensus 263 ~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL-~e~~~FgL~~ 309 (655)
T 3pvl_A 263 PIMLPVTFMDGTTKTLLTDSATTARELCNALADKISL-KDRFGFSLYI 309 (655)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC-SSCTTEEEEE
T ss_pred ceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC-cccccceeEE
Confidence 588999999999999 999999999999999999993 2344556655
No 244
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=32.16 E-value=19 Score=25.74 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=12.9
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
...+..|++|||++.
T Consensus 4 ~~~l~~L~~MGF~~~ 18 (126)
T 2lbc_A 4 ESSVMQLAEMGFPLE 18 (126)
T ss_dssp THHHHHHHTTSSCCH
T ss_pred HHHHHHHHHcCCCHH
Confidence 467899999999876
No 245
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=31.50 E-value=72 Score=29.78 Aligned_cols=57 Identities=7% Similarity=0.188 Sum_probs=37.9
Q ss_pred ecCCCCcHHHHHHHHHhhhCCCCCCC--------ceEEEeCCe--e----cCC--CCCccccccCCCCEEEEE
Q psy4259 22 HLDVQEEVKQLKEKIQSEKGSEYLAE--------YQKLIYAGK--I----LSD--DQALSEYNIDESKFIVVM 78 (203)
Q Consensus 22 ~v~~~~TV~~LK~~I~~~~~~~ip~~--------~qkLi~~Gk--~----L~D--~~tL~~~gI~~~~~i~v~ 78 (203)
+++.+.|+.+|-+.|..+....+..- ..+++|... . .++ +++|.++||++|+.|.|.
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 717 QFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp EECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred EECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 77778899999888888533002221 246677532 2 222 478999999999999874
No 246
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.30 E-value=22 Score=22.68 Aligned_cols=15 Identities=0% Similarity=0.102 Sum_probs=12.6
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|..|++|||.++
T Consensus 20 ~e~V~~LvsMGFs~~ 34 (63)
T 1wgn_A 20 RQCVETVVNMGYSYE 34 (63)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 579999999999643
No 247
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=30.72 E-value=15 Score=22.97 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=11.4
Q ss_pred hhhHHHHHhCCcC
Q psy4259 110 TATSDSMLKVFFE 122 (203)
Q Consensus 110 ~~~v~~~~~mG~~ 122 (203)
+..|+.|++|||.
T Consensus 18 ~~qi~~L~~MGF~ 30 (58)
T 1wr1_B 18 EHQLRQLNDMGFF 30 (58)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 5699999999994
No 248
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=28.89 E-value=54 Score=23.22 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=48.7
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCC--CceEEEeC--C-eecCCCCCccccccCCCCEEEEE
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLA--EYQKLIYA--G-KILSDDQALSEYNIDESKFIVVM 78 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~--~~qkLi~~--G-k~L~D~~tL~~~gI~~~~~i~v~ 78 (203)
+++|+|...+ ..++ .|..+.-|+-|.-+|-++.. ++. +.--|-+- - ..|+-..||..|||..+..+++.
T Consensus 26 eL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~--i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 26 ELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLD--VKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCC--SCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEecCC-ccEEEEEeeccccccchhhhhhhhc--ccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 3555565444 6667 88888999999999997775 332 23334332 2 35677789999999999988875
No 249
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=27.96 E-value=1.4e+02 Score=20.77 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=33.6
Q ss_pred ceEEEEEeCCCCeee-ecCCCCcHHHHHHHHHhhhCCCCCCCceEEEeCC
Q psy4259 7 DISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAG 55 (203)
Q Consensus 7 ~m~I~Vk~~~g~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qkLi~~G 55 (203)
+++|++. ..|.++. .|...-+..+|..++...+| ...-|.|-.
T Consensus 8 dvRiKfE-~~GEkRIi~f~RPv~f~eL~~Kv~~~fG-----q~ldL~y~n 51 (103)
T 2cu1_A 8 DVRVKFE-HRGEKRILQFPRPVKLEDLRSKAKIAFG-----QSMDLHYTN 51 (103)
T ss_dssp EEEEEEE-ETTEEEEEEEESSCCHHHHHHHHHHHHS-----SCEEEEECS
T ss_pred cEEEEEE-ecCeEEEEeccCCccHHHHHHHHHHHhC-----CeeeEEEec
Confidence 4666666 4577777 99999999999999999999 355666764
No 250
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=26.99 E-value=50 Score=24.56 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred CcHHHHHHHHHhhhCCCCCCC--ceEEE--eCCeecCCCCCcc
Q psy4259 27 EEVKQLKEKIQSEKGSEYLAE--YQKLI--YAGKILSDDQALS 65 (203)
Q Consensus 27 ~TV~~LK~~I~~~~~~~ip~~--~qkLi--~~Gk~L~D~~tL~ 65 (203)
.++.+|+.+...+++ ++.. ..+|+ ..|..++|+.-+.
T Consensus 82 ~SL~EL~~K~~~kL~--l~~~~~~~~LvLeeDGTeVddEeYF~ 122 (145)
T 1ibx_B 82 SCLEDLRSKACDILA--IDKSLTPVTLVLAEDGTIVDDDDYFL 122 (145)
T ss_dssp SSHHHHHHHHHHHHT--CSCTTSCCEEEETTTCCBCSSHHHHH
T ss_pred CCHHHHHHHHHHHhc--CCCCccccEEEEeeCCcEEechhHhh
Confidence 579999999999999 7553 45544 4688888775443
No 251
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=26.93 E-value=21 Score=25.62 Aligned_cols=15 Identities=0% Similarity=0.102 Sum_probs=13.0
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
.+.|..|++|||++.
T Consensus 9 ~~~v~~l~~MGFp~~ 23 (118)
T 4ae4_A 9 RQCVETVVNMGYSYE 23 (118)
T ss_dssp HHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 578999999999765
No 252
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=26.41 E-value=95 Score=21.08 Aligned_cols=38 Identities=11% Similarity=0.075 Sum_probs=32.7
Q ss_pred Ceee-ecCCCCcHHHHHHHHHhhhCCCCCCCce-EEEeCCee
Q psy4259 18 QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQ-KLIYAGKI 57 (203)
Q Consensus 18 ~~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~q-kLi~~Gk~ 57 (203)
..+. .|+...|=.++|+.|+..++ +.+... .++..||.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~--VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFK--VKVVKVNTLHVRGKK 61 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTT--CCEEEEEEEEECCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhC--CceeeeeeeeeCCce
Confidence 6677 99999999999999999999 888887 46777764
No 253
>3le1_A Phosphotransferase system, HPR-related proteins; HPR PTS phosphotransfer, kinase; 1.51A {Thermoanaerobacter tengcongensis} SCOP: d.94.1.0 PDB: 3le3_A 3lnw_A 3lfg_A 3le5_A
Probab=26.09 E-value=83 Score=20.91 Aligned_cols=36 Identities=3% Similarity=0.026 Sum_probs=25.6
Q ss_pred CceEEEeCCeecCCCC--CccccccCCCCEEEEEeecC
Q psy4259 47 EYQKLIYAGKILSDDQ--ALSEYNIDESKFIVVMLSKP 82 (203)
Q Consensus 47 ~~qkLi~~Gk~L~D~~--tL~~~gI~~~~~i~v~~~k~ 82 (203)
.++.|.++|+..+-.. .|-.+|++.|+.|.+.+..+
T Consensus 31 s~I~i~~~~~~vnaKSim~lm~Lg~~~G~~i~i~a~G~ 68 (88)
T 3le1_A 31 SQIWVEKDNKKVNAKSIMGIMSLGVSQGNVVKLSAEGD 68 (88)
T ss_dssp SEEEEEETTEEEETTCHHHHHHHCCCTTCEEEEEEEST
T ss_pred CeEEEEECCEEEehHhHHHHHhcCCCCCCEEEEEEeCC
Confidence 5788888887764332 24556899999999887554
No 254
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=23.22 E-value=93 Score=21.26 Aligned_cols=37 Identities=19% Similarity=0.144 Sum_probs=31.4
Q ss_pred eee-ecCCCCcHHHHHHHHHhhhCCCCCCCceE-EEeCCee
Q psy4259 19 TVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQK-LIYAGKI 57 (203)
Q Consensus 19 ~~~-~v~~~~TV~~LK~~I~~~~~~~ip~~~qk-Li~~Gk~ 57 (203)
.++ .|++..|=.++|+.|+..++ +.+.... +++.||.
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~--VkV~~VNT~~~~gK~ 62 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFG--VRVIGISTMNVPGKR 62 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHC--CCCSEEEECCBCCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhC--CCceEEEeEEeCCcc
Confidence 377 99999999999999999999 8888884 5667753
No 255
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.79 E-value=39 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHh
Q psy4259 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELIS 177 (203)
Q Consensus 146 ~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~ 177 (203)
...++...||+++..+++.+.+++|+-.+.|.
T Consensus 19 ~~l~~a~g~~~La~elL~~fl~~~~~~~~~l~ 50 (123)
T 3iqt_A 19 LALRQAAGKTDLARDMLQMLLDFLPEVRNKVE 50 (123)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555667777777777777666666665554
No 256
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=22.76 E-value=27 Score=27.07 Aligned_cols=15 Identities=20% Similarity=0.301 Sum_probs=12.9
Q ss_pred hhhHHHHHhCCcCCC
Q psy4259 110 TATSDSMLKVFFERV 124 (203)
Q Consensus 110 ~~~v~~~~~mG~~~~ 124 (203)
++.|+.|++|||+++
T Consensus 164 eekV~~l~~MGf~~~ 178 (201)
T 3k9o_A 164 TKKIENLCAMGFDRN 178 (201)
T ss_dssp HHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHcCCCHH
Confidence 579999999999764
No 257
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=22.26 E-value=47 Score=22.92 Aligned_cols=40 Identities=15% Similarity=0.364 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCcHHHHHHHHhhcCH-HHH-HHHhhCHHHHHHHHcC
Q psy4259 145 QQMRTVVQQNPELLPTVLQQIGQSNP-ALL-ELISHNQEAFVRMLNE 189 (203)
Q Consensus 145 ~~~r~~i~~nP~~l~~il~~l~~~nP-~l~-~~i~~n~~~f~~ml~~ 189 (203)
+++.+.|++||++ +.+|+ .|| +|- ++|..+...|.+.+.+
T Consensus 22 ~~~~~~vl~dP~V-~~Fl~----~h~~~l~~~~I~~s~~kL~ey~~e 63 (106)
T 2k7r_A 22 EQMKEKVMKDQDV-QAFLK----ENEEVIDQKMIEKSLNKLYEYIEQ 63 (106)
T ss_dssp HHHHHHHTTCHHH-HHHHH----HSTTTCCHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHcCHHH-HHHHH----HChhhCCHHHHHhhHHHHHHHHHH
Confidence 4577777788874 33443 466 343 3566666666666643
No 258
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=22.05 E-value=61 Score=21.32 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=26.7
Q ss_pred eee-ecCCCCcHHHHHHHHHhhhCCCCC-----CCceEEEeCC
Q psy4259 19 TVS-HLDVQEEVKQLKEKIQSEKGSEYL-----AEYQKLIYAG 55 (203)
Q Consensus 19 ~~~-~v~~~~TV~~LK~~I~~~~~~~ip-----~~~qkLi~~G 55 (203)
.+. -|+++.+..+|..+|..+.+ .. ....+|-|+.
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~--~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKIS--NTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTT--TTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHc--ccccccccceeEEEEEc
Confidence 345 78899999999999999998 54 2455666654
No 259
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=21.79 E-value=89 Score=21.22 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=22.2
Q ss_pred CCcceEEEEEeCCCCeee-ecCCCCcHHHHH
Q psy4259 4 LAHDISDITQNQWQQTVS-HLDVQEEVKQLK 33 (203)
Q Consensus 4 ~~~~m~I~Vk~~~g~~~~-~v~~~~TV~~LK 33 (203)
.+.-++|+|...+|+.+. ++....||.+.=
T Consensus 2 ~~~m~~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 2 ASDVVNVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 344467888778898877 888888987753
No 260
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=20.90 E-value=2e+02 Score=21.72 Aligned_cols=40 Identities=10% Similarity=-0.102 Sum_probs=28.5
Q ss_pred eEEEEEeCC--CCeee--ecCCCCcHHHHHHHHHhhhCCCCCCCce
Q psy4259 8 ISDITQNQW--QQTVS--HLDVQEEVKQLKEKIQSEKGSEYLAEYQ 49 (203)
Q Consensus 8 m~I~Vk~~~--g~~~~--~v~~~~TV~~LK~~I~~~~~~~ip~~~q 49 (203)
.+|+|...+ ....- .|+.+.|+.+|-..|...+| ..-...
T Consensus 9 y~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afg--w~~~HL 52 (188)
T 2i1s_A 9 YHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMD--WEDYHL 52 (188)
T ss_dssp EEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTT--CCCCSC
T ss_pred EEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhC--CCCCEe
Confidence 455555442 34443 99999999999999999999 554433
No 261
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=20.81 E-value=46 Score=23.43 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhcCHHHHHHHh
Q psy4259 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELIS 177 (203)
Q Consensus 146 ~~r~~i~~nP~~l~~il~~l~~~nP~l~~~i~ 177 (203)
...++...||+++..+++.+..++|.-.+.|.
T Consensus 10 ~~l~~~~g~~~L~~~lL~~fl~~~~~~~~~l~ 41 (119)
T 3myf_A 10 LCLTQANHKSNLALEMLKMLLDSLPETVEKIQ 41 (119)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555566777777777777666666555543
Done!