Your job contains 1 sequence.
>psy4259
MGMLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD
DQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF
FERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQ
EAFVRMLNEPVAGDRRNKNVLGT
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4259
(203 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040808-59 - symbol:rad23aa "RAD23 homolog A... 220 2.6e-37 2
UNIPROTKB|A3KMV2 - symbol:RAD23A "UV excision repair prot... 214 7.6e-36 2
UNIPROTKB|F1PTL1 - symbol:RAD23A "Uncharacterized protein... 215 1.9e-35 2
RGD|1309899 - symbol:Rad23a "RAD23 homolog A (S. cerevisi... 214 4.8e-35 2
UNIPROTKB|P54725 - symbol:RAD23A "UV excision repair prot... 214 5.4e-35 2
UNIPROTKB|D4AD39 - symbol:Rad23a "RAD23a homolog (S. cere... 214 6.8e-35 2
MGI|MGI:105126 - symbol:Rad23a "RAD23a homolog (S. cerevi... 214 3.7e-34 2
POMBASE|SPBC2D10.12 - symbol:rhp23 "Rad23 homolog Rhp23" ... 204 2.0e-33 2
UNIPROTKB|K7ESE3 - symbol:RAD23A "UV excision repair prot... 187 4.1e-30 2
UNIPROTKB|G4MUE8 - symbol:MGG_01656 "UV excision repair p... 163 5.4e-25 2
WB|WBGene00013924 - symbol:rad-23 species:6239 "Caenorhab... 165 5.5e-25 2
DICTYBASE|DDB_G0286357 - symbol:rcbA "repC-binding protei... 148 4.2e-22 2
ZFIN|ZDB-GENE-040426-1487 - symbol:rad23b "RAD23 homolog ... 229 8.5e-19 1
ZFIN|ZDB-GENE-051113-160 - symbol:zgc:123349 "rad23ab" sp... 227 1.9e-18 1
UNIPROTKB|F1N9B7 - symbol:RAD23B "Uncharacterized protein... 225 2.4e-18 1
FB|FBgn0026777 - symbol:Rad23 "Rad23" species:7227 "Droso... 225 3.5e-18 1
RGD|1562958 - symbol:Rad23b "RAD23 homolog B (S. cerevisi... 223 5.8e-18 1
MGI|MGI:105128 - symbol:Rad23b "RAD23b homolog (S. cerevi... 223 5.8e-18 1
UNIPROTKB|F1SP32 - symbol:RAD23B "Uncharacterized protein... 220 1.2e-17 1
UNIPROTKB|Q29RK4 - symbol:RAD23B "UV excision repair prot... 220 1.2e-17 1
UNIPROTKB|P54727 - symbol:RAD23B "UV excision repair prot... 219 1.5e-17 1
UNIPROTKB|B4DDJ7 - symbol:RAD23A "cDNA FLJ51789, highly s... 214 1.6e-17 1
UNIPROTKB|K7EQ16 - symbol:RAD23A "UV excision repair prot... 214 1.6e-17 1
UNIPROTKB|E2R4A5 - symbol:RAD23B "Uncharacterized protein... 217 2.5e-17 1
UNIPROTKB|F1SD96 - symbol:RAD23A "Uncharacterized protein... 216 2.5e-17 1
UNIPROTKB|Q5W0S5 - symbol:RAD23B "UV excision repair prot... 212 2.5e-17 1
TAIR|locus:2076944 - symbol:RAD23C "RADIATION SENSITIVE23... 203 9.7e-16 1
TAIR|locus:2200522 - symbol:RAD23A "RADIATION SENSITIVE23... 185 6.4e-14 1
TAIR|locus:2177376 - symbol:RAD23D "RADIATION SENSITIVE23... 184 9.0e-14 1
ASPGD|ASPL0000045893 - symbol:AN2304 species:162425 "Emer... 179 3.0e-13 1
FB|FBgn0039147 - symbol:CG10694 species:7227 "Drosophila ... 122 1.9e-12 2
SGD|S000004889 - symbol:DSK2 "Nuclear-enriched ubiquitin-... 128 4.1e-08 2
TAIR|locus:2059682 - symbol:DSK2 "AT2G17200" species:3702... 128 6.6e-06 1
GENEDB_PFALCIPARUM|PF10_0114 - symbol:PF10_0114 "DNA repa... 93 7.6e-06 2
UNIPROTKB|Q8IJS8 - symbol:PF10_0114 "DNA repair protein R... 93 7.6e-06 2
TAIR|locus:2059677 - symbol:DSK2a "AT2G17190" species:370... 125 1.5e-05 1
UNIPROTKB|Q6PA26 - symbol:Bag6-b "Large proline-rich prot... 125 3.9e-05 1
ZFIN|ZDB-GENE-060825-176 - symbol:zgc:153389 "zgc:153389"... 105 0.00013 1
GENEDB_PFALCIPARUM|PF13_0346 - symbol:PF13_0346 "ubiquiti... 95 0.00014 1
UNIPROTKB|Q8ID50 - symbol:PF13_0346 "60S ribosomal protei... 95 0.00014 1
ASPGD|ASPL0000027269 - symbol:AN5451 species:162425 "Emer... 116 0.00014 1
RGD|1560997 - symbol:RGD1560997 "similar to ribosomal pro... 104 0.00018 1
WB|WBGene00006728 - symbol:ubq-2 species:6239 "Caenorhabd... 93 0.00023 1
DICTYBASE|DDB_G0267452 - symbol:sonA "ubiquilin domain-co... 115 0.00025 1
UNIPROTKB|A4IH17 - symbol:Bag6 "Large proline-rich protei... 117 0.00038 1
UNIPROTKB|F2Z4K9 - symbol:UBB "Polyubiquitin-B" species:9... 91 0.00040 1
UNIPROTKB|Q9PST8 - symbol:UbI "Polyubiquitin-B" species:9... 91 0.00040 1
UNIPROTKB|F5H6Q2 - symbol:UBC "Polyubiquitin-C" species:9... 91 0.00040 1
UNIPROTKB|J3QS39 - symbol:UBB "Ubiquitin" species:9606 "H... 91 0.00040 1
UNIPROTKB|F6TC96 - symbol:BAG6 "Large proline-rich protei... 102 0.00042 1
MGI|MGI:2150152 - symbol:Ubqln4 "ubiquilin 4" species:100... 99 0.00049 2
RGD|620745 - symbol:Ubqln1 "ubiquilin 1" species:10116 "R... 113 0.00049 1
UNIPROTKB|Q9UMX0 - symbol:UBQLN1 "Ubiquilin-1" species:96... 113 0.00050 1
UNIPROTKB|Q9YHD3 - symbol:Bag6-a "Large proline-rich prot... 115 0.00066 1
DICTYBASE|DDB_G0278711 - symbol:nedd8 "ubiquitin-like pro... 89 0.00067 1
RGD|2321712 - symbol:LOC100360645 "ubiquitin B-like" spec... 89 0.00067 1
UNIPROTKB|F1M4U4 - symbol:F1M4U4 "Uncharacterized protein... 89 0.00067 1
UNIPROTKB|I3LSM3 - symbol:UBQLN1 "Uncharacterized protein... 111 0.00087 1
DICTYBASE|DDB_G0280755 - symbol:ubqB "ubiquitin/ribosomal... 92 0.00092 1
>ZFIN|ZDB-GENE-040808-59 [details] [associations]
symbol:rad23aa "RAD23 homolog Aa (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 ZFIN:ZDB-GENE-040808-59
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 KO:K10839
InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
HOVERGEN:HBG055042 OrthoDB:EOG4M399F EMBL:BC079526 IPI:IPI00483790
RefSeq:NP_001003739.1 UniGene:Dr.79995 ProteinModelPortal:Q6AXI3
SMR:Q6AXI3 STRING:Q6AXI3 PRIDE:Q6AXI3 GeneID:445284 KEGG:dre:445284
CTD:445284 NextBio:20832031 ArrayExpress:Q6AXI3 Bgee:Q6AXI3
Uniprot:Q6AXI3
Length = 362
Score = 220 (82.5 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
E E+PL FLR+QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLN
Sbjct: 223 EGENPLEFLRSQPQFQSMRQVIQQNPSLLPALLQQLGQENPELLQQISQHQELFIQMLNA 282
Query: 190 PV 191
PV
Sbjct: 283 PV 284
Score = 202 (76.2 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 47/103 (45%), Positives = 64/103 (62%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ +D+ +E VK LKEKI++EKG + + QKLIYAGKIL DD + EY
Sbjct: 3 ITLKTLQQQTIQIDIDDEQTVKALKEKIEAEKGRDSFPVAGQKLIYAGKILQDDTPIKEY 62
Query: 68 NIDESKFIVVMLSKPKPTPAPYSGPSDPTQP--AGQESEATRP 108
IDE F+VVM+SK K +P + PS+P++ A S ++ P
Sbjct: 63 KIDEKNFVVVMVSKTK-SPGTSAAPSEPSRSMAASSSSSSSSP 104
>UNIPROTKB|A3KMV2 [details] [associations]
symbol:RAD23A "UV excision repair protein RAD23 homolog A"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IEA] [GO:0032434 "regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0000502
"proteasome complex" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 Prosite:PS00299 GO:GO:0005634
GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0000502 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 GO:GO:0045070
GO:GO:0032434 KO:K10839 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 EMBL:BC133282
IPI:IPI00714456 RefSeq:NP_001076083.1 UniGene:Bt.23124
ProteinModelPortal:A3KMV2 SMR:A3KMV2 STRING:A3KMV2 PRIDE:A3KMV2
Ensembl:ENSBTAT00000020113 GeneID:540564 KEGG:bta:540564 CTD:5886
HOVERGEN:HBG055042 InParanoid:A3KMV2 OMA:TAREDKS OrthoDB:EOG4M399F
NextBio:20878705 ArrayExpress:A3KMV2 Uniprot:A3KMV2
Length = 362
Score = 214 (80.4 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
Score = 195 (73.7 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 46/99 (46%), Positives = 62/99 (62%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S PS+ + A ES + P+ S
Sbjct: 72 VVVMVTKAKTSPGT-SVPSEASPTATPESSTSFPSAPAS 109
Score = 48 (22.0 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 80 SKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLR 139
S P +P SG + G+E +A +T + S + + G E E +A LR
Sbjct: 128 SAPTTSPESVSGSVPSSGSGGREEDAA--STLVTGSEYETMLTEIMSMGYERERVVAALR 185
>UNIPROTKB|F1PTL1 [details] [associations]
symbol:RAD23A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045070 "positive regulation of viral genome
replication" evidence=IEA] [GO:0032434 "regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 GO:GO:0005634 GO:GO:0043161
GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289
GO:GO:0045070 GO:GO:0032434 KO:K10839 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
GeneTree:ENSGT00390000012078 TIGRFAMs:TIGR00601 CTD:5886
OMA:TAREDKS EMBL:AAEX03012401 RefSeq:XP_542038.2
ProteinModelPortal:F1PTL1 Ensembl:ENSCAFT00000027066 GeneID:484922
KEGG:cfa:484922 Uniprot:F1PTL1
Length = 362
Score = 215 (80.7 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 42/63 (66%), Positives = 50/63 (79%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GGE+ PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++ML
Sbjct: 226 GGEN--PLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQML 283
Query: 188 NEP 190
NEP
Sbjct: 284 NEP 286
Score = 190 (71.9 bits), Expect = 1.9e-35, Sum P(2) = 1.9e-35
Identities = 45/99 (45%), Positives = 60/99 (60%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K +P S P + + A ES + P S
Sbjct: 72 VVVMVTKAKTSPGT-SVPPEASPTAAPESSTSFPPAPAS 109
Score = 37 (18.1 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 79 LSKPKPTPAPYSGPSDPTQPA-GQES-EATRPATATS 113
+S P PT PS+ + P ES + P++ +S
Sbjct: 111 MSHPPPTAREDKSPSEESVPTTSPESVSGSVPSSGSS 147
>RGD|1309899 [details] [associations]
symbol:Rad23a "RAD23 homolog A (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA;ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0031593
"polyubiquitin binding" evidence=IEA;ISO] [GO:0032434 "regulation
of proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0045070 "positive
regulation of viral genome replication" evidence=IEA;ISO]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 RGD:1309899 GO:GO:0005634
GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
GO:GO:0006289 eggNOG:COG5272 KO:K10839 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
GeneTree:ENSGT00390000012078 HOGENOM:HOG000172162
TIGRFAMs:TIGR00601 CTD:5886 HOVERGEN:HBG055042 OrthoDB:EOG4M399F
UniGene:Rn.105419 EMBL:BC084695 IPI:IPI00365167
RefSeq:NP_001013208.1 SMR:Q5XFX7 STRING:Q5XFX7
Ensembl:ENSRNOT00000004042 GeneID:361381 KEGG:rno:361381
NextBio:676090 Genevestigator:Q5XFX7 Uniprot:Q5XFX7
Length = 351
Score = 214 (80.4 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 228 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 286
Score = 186 (70.5 bits), Expect = 4.8e-35, Sum P(2) = 4.8e-35
Identities = 50/104 (48%), Positives = 64/104 (61%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEYHIDEKNF 71
Query: 75 IVVMLSKPKP---TPAPYSGPSDPTQPAGQESEATRPATATSDS 115
+VVM++K K TPAP + PT A + S PA A+ S
Sbjct: 72 VVVMVTKAKAGQGTPAPPE--ASPTA-APEPSTPFPPAPASGMS 112
>UNIPROTKB|P54725 [details] [associations]
symbol:RAD23A "UV excision repair protein RAD23 homolog A"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032434 "regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
[GO:0045070 "positive regulation of viral genome replication"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 Prosite:PS00299
GO:GO:0005634 GO:GO:0019048 GO:GO:0043161 GO:GO:0003684
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0003697
GO:GO:0000502 GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 EMBL:AD000092
GO:GO:0045070 GO:GO:0032434 KO:K10839 InterPro:IPR006636
SMART:SM00727 PDB:1P9D PDBsum:1P9D Gene3D:1.10.10.540
SUPFAM:SSF101238 TIGRFAMs:TIGR00601 CTD:5886 HOVERGEN:HBG055042
OMA:TAREDKS OrthoDB:EOG4M399F EMBL:D21235 EMBL:AF549209
EMBL:BC014026 IPI:IPI00008219 PIR:S44443 RefSeq:NP_001257291.1
RefSeq:NP_001257292.1 RefSeq:NP_005044.1 UniGene:Hs.643267 PDB:1DV0
PDB:1F4I PDB:1IFY PDB:1OQY PDB:1P98 PDB:1QZE PDB:1TP4 PDB:1ZO6
PDB:2WYQ PDBsum:1DV0 PDBsum:1F4I PDBsum:1IFY PDBsum:1OQY
PDBsum:1P98 PDBsum:1QZE PDBsum:1TP4 PDBsum:1ZO6 PDBsum:2WYQ
DisProt:DP00156 ProteinModelPortal:P54725 SMR:P54725 IntAct:P54725
MINT:MINT-105454 STRING:P54725 PhosphoSite:P54725 DMDM:1709983
PaxDb:P54725 PeptideAtlas:P54725 PRIDE:P54725 DNASU:5886
Ensembl:ENST00000316856 GeneID:5886 KEGG:hsa:5886 UCSC:uc002mvw.1
GeneCards:GC19P013056 HGNC:HGNC:9812 MIM:600061 neXtProt:NX_P54725
PharmGKB:PA34172 InParanoid:P54725 PhylomeDB:P54725 ChiTaRS:RAD23A
EvolutionaryTrace:P54725 GenomeRNAi:5886 NextBio:22888
PMAP-CutDB:P54725 ArrayExpress:P54725 Bgee:P54725 CleanEx:HS_RAD23A
Genevestigator:P54725 GermOnline:ENSG00000179262 Uniprot:P54725
Length = 363
Score = 214 (80.4 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
Score = 187 (70.9 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 45/99 (45%), Positives = 59/99 (59%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K S P + + A ES + P TS
Sbjct: 72 VVVMVTKTKAGQGT-SAPPEASPTAAPESSTSFPPAPTS 109
>UNIPROTKB|D4AD39 [details] [associations]
symbol:Rad23a "RAD23a homolog (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 RGD:1309899 GO:GO:0005634
GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 EMBL:CH473972
SUPFAM:SSF46934 GO:GO:0006289 GO:GO:0045070 GO:GO:0032434
InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 TIGRFAMs:TIGR00601 OMA:TAREDKS IPI:IPI00561816
UniGene:Rn.105419 Ensembl:ENSRNOT00000033495 Uniprot:D4AD39
Length = 363
Score = 214 (80.4 bits), Expect = 6.8e-35, Sum P(2) = 6.8e-35
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
Score = 186 (70.5 bits), Expect = 6.8e-35, Sum P(2) = 6.8e-35
Identities = 50/104 (48%), Positives = 64/104 (61%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDIPIKEYHIDEKNF 71
Query: 75 IVVMLSKPKP---TPAPYSGPSDPTQPAGQESEATRPATATSDS 115
+VVM++K K TPAP + PT A + S PA A+ S
Sbjct: 72 VVVMVTKAKAGQGTPAPPE--ASPTA-APEPSTPFPPAPASGMS 112
>MGI|MGI:105126 [details] [associations]
symbol:Rad23a "RAD23a homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IGI] [GO:0031593
"polyubiquitin binding" evidence=ISO] [GO:0032434 "regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0045070 "positive regulation
of viral genome replication" evidence=ISO] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 MGI:MGI:105126 Prosite:PS00299
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 GO:GO:0006974
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0000502
EMBL:CH466525 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
GO:GO:0006289 eggNOG:COG5272 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 HOVERGEN:HBG055042
OMA:TAREDKS OrthoDB:EOG4M399F EMBL:X92410 EMBL:BC145372
IPI:IPI00307988 UniGene:Mm.255539 ProteinModelPortal:P54726
SMR:P54726 IntAct:P54726 STRING:P54726 PhosphoSite:P54726
PaxDb:P54726 PRIDE:P54726 Ensembl:ENSMUST00000109761
InParanoid:P54726 Bgee:P54726 CleanEx:MM_RAD23A
Genevestigator:P54726 GermOnline:ENSMUSG00000003813 Uniprot:P54726
Length = 363
Score = 214 (80.4 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 287
Score = 179 (68.1 bits), Expect = 3.7e-34, Sum P(2) = 3.7e-34
Identities = 43/90 (47%), Positives = 58/90 (64%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + EY+IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKNF 71
Query: 75 IVVMLSKPK-----PTPAPYSGPSDPTQPA 99
+VVM++K K P P P + P+ +P+
Sbjct: 72 VVVMVTKAKAGQGIPAP-PEASPTAVPEPS 100
>POMBASE|SPBC2D10.12 [details] [associations]
symbol:rhp23 "Rad23 homolog Rhp23" species:4896
"Schizosaccharomyces pombe" [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=IMP] [GO:0007346 "regulation of mitotic cell cycle"
evidence=TAS] [GO:0016567 "protein ubiquitination" evidence=IMP]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
[GO:0031593 "polyubiquitin binding" evidence=TAS] [GO:0042177
"negative regulation of protein catabolic process" evidence=IMP]
[GO:0043130 "ubiquitin binding" evidence=IDA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 PomBase:SPBC2D10.12 GO:GO:0005829
GO:GO:0007346 GO:GO:0005635 GO:GO:0003684 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016567 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0030433 GO:GO:0042177
GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
GO:GO:0006289 eggNOG:COG5272 KO:K10839 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
HOGENOM:HOG000172162 OrthoDB:EOG4MSH80 TIGRFAMs:TIGR00601
EMBL:AF174293 PIR:T40115 RefSeq:NP_596231.1
ProteinModelPortal:O74803 SMR:O74803 MINT:MINT-216365 STRING:O74803
PRIDE:O74803 EnsemblFungi:SPBC2D10.12.1 GeneID:2540481
KEGG:spo:SPBC2D10.12 OMA:YERSEVE NextBio:20801608 Uniprot:O74803
Length = 368
Score = 204 (76.9 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 45/100 (45%), Positives = 62/100 (62%)
Query: 101 QESEATRPATATSDSML---KVFFERVN---PYGGESEDPLAFLRTQPQFQQMRTVVQQN 154
Q+SEA P + + L E N P +DPL FLR+ PQFQQ+R +VQQN
Sbjct: 207 QQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDDPLGFLRSIPQFQQLRQIVQQN 266
Query: 155 PELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
P++L T+LQQIGQ +PAL + I+ N EAF+++L E G+
Sbjct: 267 PQMLETILQQIGQGDPALAQAITQNPEAFLQLLAEGAEGE 306
Score = 184 (69.8 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
Identities = 44/108 (40%), Positives = 65/108 (60%)
Query: 13 QNQWQQ--TVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
+N QQ +S + ++ +LKEKIQ+++ Y E QKLIY+G+IL+DD+ + EYNI
Sbjct: 6 KNLQQQKFVISDVSADTKISELKEKIQTQQN--YEVERQKLIYSGRILADDKTVGEYNIK 63
Query: 71 ESKFIVVMLSKPKP-TPAPYSGPSD-PTQPAG-QESEATRPATATSDS 115
E FIV M+S+PK T P S S P PA E + P++ ++S
Sbjct: 64 EQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAES 111
>UNIPROTKB|K7ESE3 [details] [associations]
symbol:RAD23A "UV excision repair protein RAD23 homolog A"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 TIGRFAMs:TIGR00601 RefSeq:NP_001257292.1
GeneID:5886 HGNC:HGNC:9812 EMBL:AC092069 Ensembl:ENST00000592268
Uniprot:K7ESE3
Length = 308
Score = 187 (70.9 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 45/99 (45%), Positives = 59/99 (59%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 12 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 71
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++K K S P + + A ES + P TS
Sbjct: 72 VVVMVTKTKAGQGT-SAPPEASPTAAPESSTSFPPAPTS 109
Score = 165 (63.1 bits), Expect = 4.1e-30, Sum P(2) = 4.1e-30
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLEL 175
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+L
Sbjct: 229 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQL 272
>UNIPROTKB|G4MUE8 [details] [associations]
symbol:MGG_01656 "UV excision repair protein Rad23"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 GO:GO:0005634 GO:GO:0043161
GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
InterPro:IPR019955 PROSITE:PS50053 EMBL:CM001232 SUPFAM:SSF46934
GO:GO:0006289 KO:K10839 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 TIGRFAMs:TIGR00601
RefSeq:XP_003714642.1 ProteinModelPortal:G4MUE8 SMR:G4MUE8
EnsemblFungi:MGG_01656T0 GeneID:2679333 KEGG:mgr:MGG_01656
Uniprot:G4MUE8
Length = 401
Score = 163 (62.4 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 128 GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
GG+S L FLR QFQQ+R VVQQ P++L +LQQ+G NP L +LI+ N E F+ +L
Sbjct: 273 GGQSLGNLDFLRNNTQFQQLRQVVQQQPQMLEPILQQLGAGNPQLAQLIAQNPEQFLALL 332
Query: 188 NEPVAGD 194
E D
Sbjct: 333 GEDADED 339
Score = 150 (57.9 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
Identities = 36/104 (34%), Positives = 58/104 (55%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V ++ + + +K+KI E+G + + QKLIY+GKIL D++ + Y I+E F+V
Sbjct: 11 QKFVIEVEPTDLISAVKQKISEERGWD--PKLQKLIYSGKILKDEETVESYKIEEKGFVV 68
Query: 77 VMLSKPKPTPAPYSGPSD---PTQPAGQESE--ATRPATATSDS 115
+++KPK PA + S P PA + A PA A + S
Sbjct: 69 CVVNKPKAAPASAAAASSNAPPATPAAAPAATPAAPPAPAQTSS 112
Score = 47 (21.6 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVF 120
PA + P PAG + A P+ D M+ +F
Sbjct: 197 PAARAAGQSPA-PAGDAAAAAAPSGGGDDDMVNLF 230
>WB|WBGene00013924 [details] [associations]
symbol:rad-23 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 GO:GO:0000003
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272
KO:K10839 InterPro:IPR006636 SMART:SM00727 EMBL:Z69904
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
HOGENOM:HOG000172162 RefSeq:NP_496488.2 ProteinModelPortal:Q23451
SMR:Q23451 DIP:DIP-25917N IntAct:Q23451 MINT:MINT-226728
STRING:Q23451 PaxDb:Q23451 EnsemblMetazoa:ZK20.3.1
EnsemblMetazoa:ZK20.3.2 GeneID:174785 KEGG:cel:CELE_ZK20.3
UCSC:ZK20.3 CTD:174785 WormBase:ZK20.3 InParanoid:Q23451
OMA:YSGIPEA NextBio:885496 Uniprot:Q23451
Length = 323
Score = 165 (63.1 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 42/108 (38%), Positives = 59/108 (54%)
Query: 8 ISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALS 65
+ +T Q +L++ E+ + ++K + SEKG +Y E QKLIY GKIL D +
Sbjct: 2 VLSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVG 61
Query: 66 EYNIDESKFIVVMLSKPKPTP-APYSGPSDPTQPAG-QESEATRPATA 111
E D SKF+VVMLSK K T AP S + +P + A+ PA A
Sbjct: 62 EVGFDSSKFVVVMLSKRKVTEVAPSSTVATAAEPVPVAAAPASNPAPA 109
Score = 153 (58.9 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 49/135 (36%), Positives = 64/135 (47%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
L+ + + ++K + SEKG +Y E QKLIY GKIL D + E D SKF+VVMLSK
Sbjct: 19 LNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDDSVKVGEVGFDSSKFVVVMLSKR 78
Query: 83 KPT-------------PAPYSG-P-SDPTQPAGQESEATRPATA---TSDSMLKVFFERV 124
K T P P + P S+P A EA PA A T + V +
Sbjct: 79 KVTEVAPSSTVATAAEPVPVAAAPASNPAPAADVAPEAAAPAEAEALTDEQEENVL--AI 136
Query: 125 NPYGGESEDPLAFLR 139
G + E +A LR
Sbjct: 137 TGMGYDREQTIAALR 151
Score = 143 (55.4 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
+ D L L PQ ++R ++QQNPE+L VLQQ+ NP L++ I +NQ+AF+ +LN
Sbjct: 191 DGNDDLNMLANMPQLAEIRALIQQNPEMLAAVLQQLAAVNPRLVQTIQNNQQAFMDLLNG 250
Query: 190 PVAG 193
G
Sbjct: 251 GAQG 254
>DICTYBASE|DDB_G0286357 [details] [associations]
symbol:rcbA "repC-binding protein A" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 dictyBase:DDB_G0286357 Prosite:PS00299
GO:GO:0005634 GO:GO:0045335 GO:GO:0043161 GenomeReviews:CM000153_GR
GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
EMBL:AAFI02000085 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 KO:K10839
InterPro:IPR006636 SMART:SM00727 EMBL:AF103870 RefSeq:XP_637729.1
HSSP:P54725 ProteinModelPortal:Q54LV1 SMR:Q54LV1 STRING:Q54LV1
PRIDE:Q54LV1 EnsemblProtists:DDB0191177 GeneID:8625594
KEGG:ddi:DDB_G0286357 OMA:MINEPLE Gene3D:1.10.10.540
SUPFAM:SSF101238 Uniprot:Q54LV1
Length = 342
Score = 148 (57.2 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 38/85 (44%), Positives = 50/85 (58%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V +LK I SEK ++ +Q LIY+GKIL D + L YNI +S FIV+M+ KP+ PA
Sbjct: 23 VAELKNLI-SEKHNQ-TPSWQTLIYSGKILEDKRTLESYNITDSGFIVMMIKKPREAPAT 80
Query: 89 YSGPSDPTQPAGQESEATRPATATS 113
PS T PA + A P T T+
Sbjct: 81 TPAPS--TTPAPSTTSA--PTTTTT 101
Score = 141 (54.7 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 122 ERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQE 181
E + GG ++P LR P F +R + +NP ++P +LQQ+ Q+NPAL+ I N
Sbjct: 213 EEMEGGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPN 272
Query: 182 AFVRM 186
F+R+
Sbjct: 273 EFIRL 277
>ZFIN|ZDB-GENE-040426-1487 [details] [associations]
symbol:rad23b "RAD23 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 ZFIN:ZDB-GENE-040426-1487
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 GO:GO:0006289 HSSP:Q862M4 eggNOG:COG5272 KO:K10839
InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
HOVERGEN:HBG055042 CTD:5887 EMBL:BC056578 IPI:IPI00482453
RefSeq:NP_956858.1 UniGene:Dr.107756 ProteinModelPortal:Q6PHE9
SMR:Q6PHE9 PRIDE:Q6PHE9 GeneID:393536 KEGG:dre:393536
InParanoid:Q6PHE9 NextBio:20814557 ArrayExpress:Q6PHE9 Bgee:Q6PHE9
Uniprot:Q6PHE9
Length = 382
Score = 229 (85.7 bits), Expect = 8.5e-19, P = 8.5e-19
Identities = 49/102 (48%), Positives = 62/102 (60%)
Query: 91 GPSDPTQPAGQESEATRPATATSDSMLKVFFER-VNPYGGESEDPLAFLRTQPQFQQMRT 149
G D P+G + A+ PA A S + P +PL FLR QPQF QMR
Sbjct: 210 GAVDAVSPSGS-TPASAPAPAISTGLSSPSSTAPAQPSSASGANPLEFLRNQPQFLQMRQ 268
Query: 150 VVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 269 IIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPV 310
Score = 218 (81.8 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 52/104 (50%), Positives = 66/104 (63%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK LKEKI++EKG + + QKLIYAGKILSDD AL EY IDE F
Sbjct: 10 QQTFKIDIDAEETVKALKEKIENEKGKDGFPVAGQKLIYAGKILSDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKPT--PAPYSGPSDPTQPAGQESEATRPATA-TSDS 115
+VVM++KPK PAP S S + + S + P+ A S+S
Sbjct: 70 VVVMVTKPKSASAPAPPSSSSSSSSSSTTASASAAPSAAPVSES 113
>ZFIN|ZDB-GENE-051113-160 [details] [associations]
symbol:zgc:123349 "rad23ab" species:7955 "Danio
rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 ZFIN:ZDB-GENE-051113-160 GO:GO:0005634
GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
GO:GO:0006289 KO:K10839 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 TIGRFAMs:TIGR00601
HOVERGEN:HBG055042 EMBL:BC108000 IPI:IPI00619183
RefSeq:NP_001032776.1 UniGene:Dr.84850 ProteinModelPortal:Q32PS7
SMR:Q32PS7 STRING:Q32PS7 PRIDE:Q32PS7 GeneID:562839 KEGG:dre:562839
InParanoid:Q32PS7 NextBio:20884614 ArrayExpress:Q32PS7 Bgee:Q32PS7
Uniprot:Q32PS7
Length = 404
Score = 227 (85.0 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 55/112 (49%), Positives = 71/112 (63%)
Query: 83 KPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE--SEDPLAFLRT 140
+PTP S+PT PA Q ++ PA A ++S GG S +PL FLR
Sbjct: 251 RPTPV-----SNPTPPAPQRAQPP-PAAAGAES------------GGAQASANPLEFLRH 292
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
QPQFQQMR ++QQNP LLP +LQQ+G+ NP LL+ I+ +QE FV+MLNEP A
Sbjct: 293 QPQFQQMRQIIQQNPSLLPALLQQLGRDNPQLLQQITQHQERFVQMLNEPEA 344
Score = 206 (77.6 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 68/185 (36%), Positives = 93/185 (50%)
Query: 11 ITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEY 67
IT QQ + + EE VK LKEKI+ EKG + + A QKLIYAGKIL+DD L EY
Sbjct: 4 ITLKTLQQQTFKVQIDEELTVKALKEKIEEEKGKDGFPAVGQKLIYAGKILNDDIPLKEY 63
Query: 68 NIDESKFIVVMLSKPK-------PTPAPYSG-PS-DPTQPAGQESEATRPATATSDSMLK 118
IDE F+VVM++KPK PTP P S P+ PT P + + P T + ++
Sbjct: 64 KIDEKNFVVVMVTKPKSAASPQTPTPVPVSETPTHQPTTPVAPPNASIVPETTPDPAPVE 123
Query: 119 --VFFERVNPY----GGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPAL 172
E ++P SED + T+P V++ E+ Q I QS +L
Sbjct: 124 PAASVEPIDPPVTAPPAASEDTVE--TTEPVSATPAPAVEE--EIQGQEEQAIAQSEASL 179
Query: 173 LELIS 177
+ +S
Sbjct: 180 TDELS 184
>UNIPROTKB|F1N9B7 [details] [associations]
symbol:RAD23B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0000715 "nucleotide-excision repair, DNA
damage recognition" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0032434
"regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0071942 "XPC complex" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 GO:GO:0005737 GO:GO:0043161
GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0071942
GO:GO:0032434 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
TIGRFAMs:TIGR00601 EMBL:AADN02062165 EMBL:AADN02062166
EMBL:AADN02062167 IPI:IPI00580312 Ensembl:ENSGALT00000025051
OMA:GIPEQME Uniprot:F1N9B7
Length = 381
Score = 225 (84.3 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 51/111 (45%), Positives = 68/111 (61%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQ 145
P ++PTQ A S T ++A + ++ + + GG PL FLR QPQFQ
Sbjct: 204 PGDNQAVAEPTQAA---STGTSQSSAVAAAVATIPTTATS-LGGH---PLEFLRNQPQFQ 256
Query: 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRR 196
QMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F+ MLNEPV R+
Sbjct: 257 QMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIHMLNEPVIESRQ 307
Score = 180 (68.4 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 39/86 (45%), Positives = 50/86 (58%)
Query: 29 VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPA 87
VK LKEKI+SE+G + + QKLIYAGKIL+DD AL EY IDE F+VVM++KPK A
Sbjct: 1 VKALKEKIESERGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAATA 60
Query: 88 PYSGPSDPTQPAGQESEATRPATATS 113
+ G P ++
Sbjct: 61 ATTATQQTNSTTGVSVTTAAPTPVSA 86
>FB|FBgn0026777 [details] [associations]
symbol:Rad23 "Rad23" species:7227 "Drosophila melanogaster"
[GO:0006289 "nucleotide-excision repair" evidence=ISS;NAS]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 GO:GO:0005634
GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 EMBL:AE014135
SUPFAM:SSF46934 GO:GO:0006289 KO:K10839 InterPro:IPR006636
SMART:SM00727 HSSP:P54725 Gene3D:1.10.10.540 SUPFAM:SSF101238
GeneTree:ENSGT00390000012078 TIGRFAMs:TIGR00601 OMA:NENEMES
UniGene:Dm.1397 GeneID:43785 KEGG:dme:Dmel_CG1836 CTD:43785
FlyBase:FBgn0026777 ChiTaRS:Rad23 GenomeRNAi:43785 NextBio:835805
EMBL:AF132147 RefSeq:NP_651918.2 SMR:Q9V3W9 IntAct:Q9V3W9
MINT:MINT-290357 STRING:Q9V3W9 EnsemblMetazoa:FBtr0089122
EnsemblMetazoa:FBtr0333679 UCSC:CG1836-RA InParanoid:Q9V3W9
Uniprot:Q9V3W9
Length = 414
Score = 225 (84.3 bits), Expect = 3.5e-18, P = 3.5e-18
Identities = 62/161 (38%), Positives = 90/161 (55%)
Query: 41 GSEYLAEYQKLIYAGKILSD-DQALS-EYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQP 98
G EY ++ G ++A++ YN E ++ P Y+ ++ T P
Sbjct: 156 GDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLINGIPAEEGTFYNRLNESTNP 215
Query: 99 AGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELL 158
+ S +PA+ATS ER + DP FLR+QPQF QMR+++ QNP LL
Sbjct: 216 SLIPS-GPQPASATSA-------ERSTE---SNSDPFEFLRSQPQFLQMRSLIYQNPHLL 264
Query: 159 PTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKN 199
VLQQIGQ+NPALL+LIS NQ+AF+ MLN+P+ DR +++
Sbjct: 265 HAVLQQIGQTNPALLQLISENQDAFLNMLNQPI--DRESES 303
Score = 188 (71.2 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 53/135 (39%), Positives = 75/135 (55%)
Query: 13 QNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDE 71
+N QQT + ++ V +LK+KI E+G EY+AE QKLIYAG IL+DD+ + YN+DE
Sbjct: 6 KNLQQQTFTIEFAPEKTVLELKKKIFEERGPEYVAEKQKLIYAGVILTDDRTVGSYNVDE 65
Query: 72 SKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVN----PY 127
KFIVVML++ S S+ Q + +ES T+T DS + E N P
Sbjct: 66 KKFIVVMLTRD-------SSSSNRNQLSVKESNKL---TSTDDSKQSMPCEEANHTNSPS 115
Query: 128 GGESEDPLAFLRTQP 142
+ED + T+P
Sbjct: 116 STNTEDSVLSRETRP 130
>RGD|1562958 [details] [associations]
symbol:Rad23b "RAD23 homolog B (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0000715 "nucleotide-excision repair, DNA damage recognition"
evidence=IEA;ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032434
"regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0071942 "XPC complex" evidence=ISO;ISS] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
RGD:1562958 Prosite:PS00299 GO:GO:0005737 GO:GO:0043161
GO:GO:0003684 GO:GO:0007283 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0000502 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 eggNOG:COG5272 GO:GO:0071942 GO:GO:0032434
KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 HOVERGEN:HBG055042
OrthoDB:EOG4M399F CTD:5887 OMA:NDTIMAV EMBL:BC070960 EMBL:BC090351
EMBL:BC098674 EMBL:BC111406 IPI:IPI00210495 RefSeq:NP_001020446.1
UniGene:Rn.67042 HSSP:P54728 ProteinModelPortal:Q4KMA2 SMR:Q4KMA2
IntAct:Q4KMA2 STRING:Q4KMA2 PhosphoSite:Q4KMA2 PRIDE:Q4KMA2
Ensembl:ENSRNOT00000021629 GeneID:298012 KEGG:rno:298012
UCSC:RGD:1562958 InParanoid:Q4KMA2 NextBio:642963
Genevestigator:Q4KMA2 Uniprot:Q4KMA2
Length = 415
Score = 223 (83.6 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 54/108 (50%), Positives = 64/108 (59%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQ 143
P P S P PA + AT AT T+ S GG PL FLR QPQ
Sbjct: 241 PPPQAVS-TGTPQSPAVAAAAATTTATTTTTS------------GGH---PLEFLRNQPQ 284
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
FQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 285 FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 206 (77.6 bits), Expect = 4.4e-16, P = 4.4e-16
Identities = 46/101 (45%), Positives = 62/101 (61%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY IDE F
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
+VVM++KPK + + + + ++ PA A + +
Sbjct: 70 VVVMVTKPKAVTSAVPATTQQSSSPSTTTVSSSPAAAVAQA 110
>MGI|MGI:105128 [details] [associations]
symbol:Rad23b "RAD23b homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000502 "proteasome complex" evidence=IEA]
[GO:0000715 "nucleotide-excision repair, DNA damage recognition"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0031593 "polyubiquitin binding" evidence=ISO] [GO:0032434
"regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0071942 "XPC complex"
evidence=ISO] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
MGI:MGI:105128 Prosite:PS00299 GO:GO:0005737 GO:GO:0043161
GO:GO:0003684 GO:GO:0007283 GO:GO:0006974 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0000502 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 eggNOG:COG5272 GO:GO:0071942
GO:GO:0032434 KO:K10839 GO:GO:0000715 InterPro:IPR006636
SMART:SM00727 PDB:2F4M PDB:2F4O PDBsum:2F4M PDBsum:2F4O
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 HOVERGEN:HBG055042
OrthoDB:EOG4M399F CTD:5887 ChiTaRS:RAD23B EMBL:X92411 EMBL:AK150089
EMBL:AK160880 EMBL:AK160890 EMBL:AK160973 EMBL:AL683890
EMBL:BC027747 IPI:IPI00108774 RefSeq:NP_033037.2 UniGene:Mm.196846
ProteinModelPortal:P54728 SMR:P54728 IntAct:P54728 STRING:P54728
PhosphoSite:P54728 PaxDb:P54728 PRIDE:P54728
Ensembl:ENSMUST00000030134 GeneID:19359 KEGG:mmu:19359
InParanoid:Q3TUA4 OMA:EKGFIVC EvolutionaryTrace:P54728
NextBio:296413 Bgee:P54728 CleanEx:MM_RAD23B Genevestigator:P54728
GermOnline:ENSMUSG00000028426 Uniprot:P54728
Length = 416
Score = 223 (83.6 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 54/108 (50%), Positives = 64/108 (59%)
Query: 84 PTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQ 143
P P S P PA + AT AT T+ S GG PL FLR QPQ
Sbjct: 241 PPPQAVS-TGTPQSPAVAAAAATTTATTTTTS------------GGH---PLEFLRNQPQ 284
Query: 144 FQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
FQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 285 FQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 213 (80.0 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 47/101 (46%), Positives = 62/101 (61%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK LKEKI+SEKG + + QKLIYAGKILSDD AL EY IDE F
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
+VVM++KPK + P+ + ++ PA A + +
Sbjct: 70 VVVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQA 110
>UNIPROTKB|F1SP32 [details] [associations]
symbol:RAD23B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071942 "XPC complex" evidence=IEA] [GO:0032434
"regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031593 "polyubiquitin binding"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
GO:GO:0005737 GO:GO:0043161 GO:GO:0003684 GO:GO:0007283
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0071942 GO:GO:0032434
KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
TIGRFAMs:TIGR00601 CTD:5887 OMA:NDTIMAV EMBL:CU463059
RefSeq:XP_001927901.1 ProteinModelPortal:F1SP32
Ensembl:ENSSSCT00000005980 GeneID:100153668 KEGG:ssc:100153668
Uniprot:F1SP32
Length = 408
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 53/125 (42%), Positives = 73/125 (58%)
Query: 68 NIDES-KFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNP 126
N D + +++++ + + + A P + A Q S A AT T+ +
Sbjct: 217 NPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATTT-------TTS 269
Query: 127 YGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
GG PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++M
Sbjct: 270 SGGH---PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 326
Query: 187 LNEPV 191
LNEPV
Sbjct: 327 LNEPV 331
Score = 217 (81.4 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 51/99 (51%), Positives = 63/99 (63%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKP--TPAPYSGPSDPTQPAGQESEATRPATA 111
+VVM++KPK TPAP + + S +T PA A
Sbjct: 70 VVVMVTKPKAVTTPAPATTQQSNSATTTTVSSSTAPAAA 108
>UNIPROTKB|Q29RK4 [details] [associations]
symbol:RAD23B "UV excision repair protein RAD23 homolog B"
species:9913 "Bos taurus" [GO:0071942 "XPC complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0032434 "regulation of
proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 Prosite:PS00299
GO:GO:0005737 GO:GO:0043161 GO:GO:0003684 GO:GO:0007283
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0000502
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 eggNOG:COG5272
GO:GO:0071942 GO:GO:0032434 KO:K10839 GO:GO:0000715
InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 GeneTree:ENSGT00390000012078 HOGENOM:HOG000172162
TIGRFAMs:TIGR00601 HOVERGEN:HBG055042 OrthoDB:EOG4M399F
EMBL:BC114133 IPI:IPI00708797 RefSeq:NP_001039775.1
UniGene:Bt.75268 ProteinModelPortal:Q29RK4 SMR:Q29RK4 STRING:Q29RK4
PRIDE:Q29RK4 Ensembl:ENSBTAT00000002506 GeneID:530189
KEGG:bta:530189 CTD:5887 InParanoid:Q29RK4 OMA:NDTIMAV
NextBio:20875203 ArrayExpress:Q29RK4 Uniprot:Q29RK4
Length = 408
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 53/125 (42%), Positives = 73/125 (58%)
Query: 68 NIDES-KFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNP 126
N D + +++++ + + + A P + A Q S A AT T+ +
Sbjct: 217 NPDRAVEYLLMGIPGDRESQAVVDPPPAASTGAPQSSVAAAAATTTATTT-------TTS 269
Query: 127 YGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
GG PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++M
Sbjct: 270 SGGH---PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 326
Query: 187 LNEPV 191
LNEPV
Sbjct: 327 LNEPV 331
Score = 208 (78.3 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 49/97 (50%), Positives = 61/97 (62%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D E V+ LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F
Sbjct: 10 QQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKP--TPAPYSGPSDPTQPAGQESEATRPA 109
+VVM++KPK TPAP + + S +T PA
Sbjct: 70 VVVMVTKPKAVTTPAPATTQQSNSAATTTVSSSTAPA 106
>UNIPROTKB|P54727 [details] [associations]
symbol:RAD23B "UV excision repair protein RAD23 homolog B"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0000502 "proteasome complex"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071942 "XPC
complex" evidence=IDA] [GO:0006289 "nucleotide-excision repair"
evidence=IDA;TAS] [GO:0000715 "nucleotide-excision repair, DNA
damage recognition" evidence=IDA;TAS] [GO:0031593 "polyubiquitin
binding" evidence=IDA] [GO:0032434 "regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=TAS] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_216 InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
Prosite:PS00299 GO:GO:0005737 GO:GO:0005654 GO:GO:0043161
GO:GO:0003684 GO:GO:0007283 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 EMBL:CH471105 GO:GO:0003697 GO:GO:0000502
GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
eggNOG:COG5272 GO:GO:0000718 GO:GO:0071942 GO:GO:0032434 KO:K10839
GO:GO:0000715 InterPro:IPR006636 SMART:SM00727 PDB:1UEL PDBsum:1UEL
Gene3D:1.10.10.540 SUPFAM:SSF101238 HOGENOM:HOG000172162
TIGRFAMs:TIGR00601 HOVERGEN:HBG055042 OrthoDB:EOG4M399F CTD:5887
OMA:NDTIMAV EMBL:D21090 EMBL:AY313777 EMBL:AY165178 EMBL:AK125226
EMBL:AL137852 EMBL:BC020973 IPI:IPI00008223 PIR:S44346
RefSeq:NP_002865.1 UniGene:Hs.521640 PDB:1P1A PDB:1PVE PDBsum:1P1A
PDBsum:1PVE ProteinModelPortal:P54727 SMR:P54727 IntAct:P54727
MINT:MINT-5006025 STRING:P54727 PhosphoSite:P54727 DMDM:1709985
OGP:P54727 PaxDb:P54727 PeptideAtlas:P54727 PRIDE:P54727 DNASU:5887
Ensembl:ENST00000358015 Ensembl:ENST00000416373 GeneID:5887
KEGG:hsa:5887 UCSC:uc004bde.3 GeneCards:GC09P110045 HGNC:HGNC:9813
HPA:CAB033868 HPA:HPA029718 HPA:HPA029720 MIM:600062
neXtProt:NX_P54727 PharmGKB:PA34173 InParanoid:P54727
PhylomeDB:P54727 ChiTaRS:RAD23B EvolutionaryTrace:P54727
GenomeRNAi:5887 NextBio:22892 PMAP-CutDB:P54727 ArrayExpress:P54727
Bgee:P54727 CleanEx:HS_RAD23B Genevestigator:P54727
GermOnline:ENSG00000119318 Uniprot:P54727
Length = 409
Score = 219 (82.2 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 51/101 (50%), Positives = 62/101 (61%)
Query: 94 DPTQPAGQ---ESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQFQQMRTV 150
DP Q A +S A A AT+ + GG PL FLR QPQFQQMR +
Sbjct: 240 DPPQAASTGAPQSSAVAAAAATTTATTTT-----TSSGGH---PLEFLRNQPQFQQMRQI 291
Query: 151 VQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 292 IQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 332
Score = 212 (79.7 bits), Expect = 9.2e-17, P = 9.2e-17
Identities = 49/99 (49%), Positives = 62/99 (62%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++KPK P P+ Q A + A +T T+
Sbjct: 70 VVVMVTKPKAVSTP--APATTQQSAPASTTAVTSSTTTT 106
>UNIPROTKB|B4DDJ7 [details] [associations]
symbol:RAD23A "cDNA FLJ51789, highly similar to UV excision
repair protein RAD23 homolog A" species:9606 "Homo sapiens"
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR000449
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 GO:GO:0005634
GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 SUPFAM:SSF46934 GO:GO:0006289 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
TIGRFAMs:TIGR00601 HOVERGEN:HBG055042 UniGene:Hs.643267
HGNC:HGNC:9812 ChiTaRS:RAD23A EMBL:AC092069 EMBL:AK293219
IPI:IPI01011338 SMR:B4DDJ7 STRING:B4DDJ7 Ensembl:ENST00000541222
Uniprot:B4DDJ7
Length = 198
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 64 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 122
>UNIPROTKB|K7EQ16 [details] [associations]
symbol:RAD23A "UV excision repair protein RAD23 homolog A"
species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR000449 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 SUPFAM:SSF46934
InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 HGNC:HGNC:9812 EMBL:AC092069
Ensembl:ENST00000590881 Uniprot:K7EQ16
Length = 150
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 40/59 (67%), Positives = 48/59 (81%)
Query: 132 EDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++MLNEP
Sbjct: 27 ENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEP 85
>UNIPROTKB|E2R4A5 [details] [associations]
symbol:RAD23B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071942 "XPC complex" evidence=IEA]
[GO:0032434 "regulation of proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000715
"nucleotide-excision repair, DNA damage recognition" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
GO:GO:0005737 GO:GO:0043161 GO:GO:0003684 GO:GO:0007283
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0071942 GO:GO:0032434
KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
TIGRFAMs:TIGR00601 CTD:5887 OMA:NDTIMAV EMBL:AAEX03008026
EMBL:AAEX03008027 RefSeq:XP_538778.1 ProteinModelPortal:E2R4A5
Ensembl:ENSCAFT00000004463 GeneID:481656 KEGG:cfa:481656
Uniprot:E2R4A5
Length = 406
Score = 217 (81.4 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 53/125 (42%), Positives = 74/125 (59%)
Query: 68 NIDES-KFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNP 126
N D + +++++ + + + A P + A S A AT T+ + +P
Sbjct: 215 NPDRAVEYLLMGIPGDRESQAVVDTPPAVSTGAPPSSVAAAAATTTASTTT------ASP 268
Query: 127 YGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRM 186
GG PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++M
Sbjct: 269 -GGH---PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQM 324
Query: 187 LNEPV 191
LNEPV
Sbjct: 325 LNEPV 329
Score = 206 (77.6 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 48/96 (50%), Positives = 59/96 (61%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F
Sbjct: 10 QQTFKIDIDPDETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQE--SEATRP 108
+VVM++KPK P + + PA S +T P
Sbjct: 70 VVVMVTKPKAVTTPAPATTQQSNPATTTTVSSSTAP 105
>UNIPROTKB|F1SD96 [details] [associations]
symbol:RAD23A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045070 "positive regulation of viral genome
replication" evidence=IEA] [GO:0032434 "regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 GO:GO:0005634 GO:GO:0043161
GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289
EMBL:CU463133 GO:GO:0045070 GO:GO:0032434 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
GeneTree:ENSGT00390000012078 TIGRFAMs:TIGR00601 OMA:TAREDKS
Ensembl:ENSSSCT00000015021 Uniprot:F1SD96
Length = 380
Score = 216 (81.1 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 41/65 (63%), Positives = 49/65 (75%)
Query: 126 PYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR 185
P E+PL FLR QPQFQ MR V+QQNP LLP +LQQ+GQ NP LL+ IS +QE F++
Sbjct: 240 PTEAAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQ 299
Query: 186 MLNEP 190
MLNEP
Sbjct: 300 MLNEP 304
Score = 191 (72.3 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 61/159 (38%), Positives = 82/159 (51%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT ++ E VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F
Sbjct: 29 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNF 88
Query: 75 IVVMLSKPK------------PTPAPYSGPSDPTQPAGQESEATRPA----TATSDSMLK 118
+VVM++K K PT AP S S P PA S PA + + +S+
Sbjct: 89 VVVMVTKAKTSPGTSVPPEASPTAAPESSTSFPLAPASGMSHPPSPAREDKSPSEESVPT 148
Query: 119 VFFERVN---PYGGES---EDPLAFLRTQPQFQQMRTVV 151
E V+ P G S ED + L T +++ M T +
Sbjct: 149 TSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEI 187
>UNIPROTKB|Q5W0S5 [details] [associations]
symbol:RAD23B "UV excision repair protein RAD23 homolog B"
species:9606 "Homo sapiens" [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 GO:GO:0007283
GO:GO:0006974 InterPro:IPR019955 PROSITE:PS50053 HOVERGEN:HBG000057
HOGENOM:HOG000172162 EMBL:AL137852 UniGene:Hs.521640 HGNC:HGNC:9813
ChiTaRS:RAD23B IPI:IPI00642549 SMR:Q5W0S5 Ensembl:ENST00000419616
OrthoDB:EOG4B5P6W Uniprot:Q5W0S5
Length = 146
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 49/99 (49%), Positives = 62/99 (62%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
QQT +D +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F
Sbjct: 10 QQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNF 69
Query: 75 IVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
+VVM++KPK P P+ Q A + A +T T+
Sbjct: 70 VVVMVTKPKAVSTP--APATTQQSAPASTTAVTSSTTTT 106
>TAIR|locus:2076944 [details] [associations]
symbol:RAD23C "RADIATION SENSITIVE23C" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IDA]
[GO:0070628 "proteasome binding" evidence=IDA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 Prosite:PS00299 GO:GO:0005634
EMBL:AC021640 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043161
GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
GO:GO:0070628 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0043130
SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 KO:K10839
InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
OMA:TAREDKS EMBL:AB109196 EMBL:AB109197 EMBL:AY039562 EMBL:AY113034
IPI:IPI00547374 IPI:IPI00547984 RefSeq:NP_186903.1 UniGene:At.21477
ProteinModelPortal:Q84L31 SMR:Q84L31 IntAct:Q84L31 PaxDb:Q84L31
PRIDE:Q84L31 EnsemblPlants:AT3G02540.1 GeneID:821195
KEGG:ath:AT3G02540 GeneFarm:4552 TAIR:At3g02540 InParanoid:Q84L31
PhylomeDB:Q84L31 ProtClustDB:CLSN2915719 Genevestigator:Q84L31
Uniprot:Q84L31
Length = 419
Score = 203 (76.5 bits), Expect = 9.7e-16, P = 9.7e-16
Identities = 45/118 (38%), Positives = 69/118 (58%)
Query: 86 PAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGE-SEDPLAFLRTQPQF 144
PA P++P PA + A PA+ + + L +F + + GG L FLR QF
Sbjct: 242 PASAGQPANP--PAQTQQPAAAPASGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQF 299
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGDRRNKNVLG 202
Q +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G + N+LG
Sbjct: 300 QALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLG 357
Score = 133 (51.9 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 44/147 (29%), Positives = 66/147 (44%)
Query: 26 QEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKP 84
++ V +K+ I+S +G++ Y A Q LI+ GK+L D+ + E + E+ FIV+M++K KP
Sbjct: 20 EDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKP 79
Query: 85 TPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQPQF 144
A S S T A +T + + + V V P P A T
Sbjct: 80 ASAAASSASAGTSQAKSIPPSTSQPSISPQTPASVSAP-VAPAPTRPPPP-APTPTPAPV 137
Query: 145 QQMRTVVQQNPELLPTVLQQIGQSNPA 171
TV PE +P I S PA
Sbjct: 138 AATETVTTPIPEPVPAT---ISSSTPA 161
>TAIR|locus:2200522 [details] [associations]
symbol:RAD23A "RADIATION SENSITIVE23A" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006284 "base-excision repair" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0070628
"proteasome binding" evidence=IDA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
PRINTS:PR01839 SMART:SM00213 Prosite:PS00299 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0043161 GO:GO:0003684
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0070628
EMBL:AC006341 InterPro:IPR019955 PROSITE:PS50053 EMBL:AC010924
GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272
KO:K10839 InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
EMBL:AB109195 IPI:IPI00541487 IPI:IPI00651117 PIR:G86296 PIR:H86296
RefSeq:NP_173070.1 UniGene:At.22124 ProteinModelPortal:Q84L32
SMR:Q84L32 IntAct:Q84L32 PaxDb:Q84L32 PRIDE:Q84L32
EnsemblPlants:AT1G16190.1 GeneID:838188 KEGG:ath:AT1G16190
GeneFarm:4551 TAIR:At1g16190 InParanoid:Q84L32 OMA:HSADFED
PhylomeDB:Q84L32 ProtClustDB:CLSN2682159 Genevestigator:Q84L32
GermOnline:AT1G16190 Uniprot:Q84L32
Length = 368
Score = 185 (70.2 bits), Expect = 6.4e-14, P = 6.4e-14
Identities = 47/115 (40%), Positives = 64/115 (55%)
Query: 89 YSG-PSDPTQPA--------GQESEATRPATATSDSMLKVF-FERVNPYGGESEDPLAFL 138
YSG P T PA G+E A P+ + S L +F E V+ G L FL
Sbjct: 185 YSGIPETVTIPATNLSGVGSGRELTAPPPSGGPNSSPLDLFPQEAVSDAAGGDLGTLEFL 244
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAG 193
R QFQQ+R++V NP++L +LQ++G+ NP LL LI NQ F+++LNEP G
Sbjct: 245 RGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEG 299
Score = 117 (46.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 33/100 (33%), Positives = 50/100 (50%)
Query: 21 SHLDVQ----EEVKQLKEKIQ-SEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
SH +++ + + +K+ I+ S+ Y Q LI+ GK+L D+ L E + E F+
Sbjct: 11 SHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFL 70
Query: 76 VVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
VVMLSK K A +GPS TQP + T + S
Sbjct: 71 VVMLSKSKT--ASSAGPSS-TQPTSTTTSTISSTTLAAPS 107
>TAIR|locus:2177376 [details] [associations]
symbol:RAD23D "RADIATION SENSITIVE23D" species:3702
"Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0070628
"proteasome binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0007067 "mitosis" evidence=RCA]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 Prosite:PS00299
GO:GO:0005829 GO:GO:0005634 EMBL:AB005248 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0043161 GO:GO:0003684 GO:GO:0009409
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0070628
InterPro:IPR019955 PROSITE:PS50053 GO:GO:0043130 SUPFAM:SSF46934
GO:GO:0006289 eggNOG:COG5272 KO:K10839 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 OMA:EKGFIVC EMBL:AB109198
EMBL:AB109199 EMBL:AY037181 EMBL:AY058196 EMBL:AY081835
EMBL:AY087564 IPI:IPI00539559 IPI:IPI00544733 RefSeq:NP_198663.1
UniGene:At.25434 ProteinModelPortal:Q84L30 SMR:Q84L30 IntAct:Q84L30
STRING:Q84L30 PaxDb:Q84L30 PRIDE:Q84L30 EnsemblPlants:AT5G38470.1
GeneID:833835 KEGG:ath:AT5G38470 GeneFarm:4553 TAIR:At5g38470
InParanoid:Q84L30 PhylomeDB:Q84L30 ProtClustDB:CLSN2916638
Genevestigator:Q84L30 GermOnline:AT5G38470 Uniprot:Q84L30
Length = 378
Score = 184 (69.8 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 43/117 (36%), Positives = 63/117 (53%)
Query: 82 PKPTPAPYSGPSDPTQPAGQESEATRPATATSD---SMLKVFFERVNPY-GGESEDPLAF 137
P AP +G P Q +A PA AT + L +F + + G L F
Sbjct: 197 PPVAQAPATG-EQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGAGAGNLDF 255
Query: 138 LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVAGD 194
LR QFQ +R +VQ NP++L +LQ++G+ NP L+ LI +Q F+R++NEPV G+
Sbjct: 256 LRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGE 312
Score = 159 (61.0 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTP 86
++V +K I++ KG+EY A Q LI+ GK+L D+ L E N+ E+ FIV+MLSK K +P
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASP 80
Query: 87 APYSGPSDPTQPAGQ-ESEATRPATATSDSM 116
+ S S P A Q ++ AT +A + S+
Sbjct: 81 SGASTASAPAPSATQPQTVATPQVSAPTASV 111
>ASPGD|ASPL0000045893 [details] [associations]
symbol:AN2304 species:162425 "Emericella nidulans"
[GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0042177
"negative regulation of protein catabolic process" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0005635
"nuclear envelope" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 EMBL:BN001307
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289 InterPro:IPR006636
SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
TIGRFAMs:TIGR00601 OMA:EKGFIVC EnsemblFungi:CADANIAT00008997
Uniprot:C8VN52
Length = 369
Score = 179 (68.1 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 42/109 (38%), Positives = 61/109 (55%)
Query: 90 SGPSDPTQPAGQESEATRPATATSDSMLKVFF------ERVNPYGGESE-DP--LAFLRT 140
S + P P + PAT+ D + +F E GG S +P L FLR
Sbjct: 197 SAATTPAAPQAAAASGAPPATSGEDEPVNLFEAAAQAGEGRGGAGGASGGEPQSLDFLRN 256
Query: 141 QPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNE 189
P FQQ+R +VQQ P++L +LQQ+GQ NP + +LI N+EAF+++L+E
Sbjct: 257 HPAFQQLRQLVQQQPQMLEPILQQVGQGNPQIAQLIGQNEEAFLQLLSE 305
Score = 172 (65.6 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 44/97 (45%), Positives = 58/97 (59%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
Q+ V + E V Q+KEKI +EKG + + KLIY+GKIL DD+ + YNI+E FIV
Sbjct: 11 QKFVIDAEPSETVGQVKEKISTEKGWDVPS--LKLIYSGKILQDDKTVEFYNIEEKGFIV 68
Query: 77 VMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATS 113
M+SKPK P+ S PS P + + A PA A S
Sbjct: 69 CMVSKPKTQPSSQS-PSTPAKSV-TSTPAPPPAPAPS 103
>FB|FBgn0039147 [details] [associations]
symbol:CG10694 species:7227 "Drosophila melanogaster"
[GO:0006284 "base-excision repair" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
EMBL:AE014297 GO:GO:0005634 GO:GO:0043161 GO:GO:0003684
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272
KO:K10839 HSSP:P54725 Gene3D:1.10.10.540 SUPFAM:SSF101238
GeneTree:ENSGT00390000012078 EMBL:AY089339 RefSeq:NP_651212.1
UniGene:Dm.5087 SMR:Q9VCD5 IntAct:Q9VCD5 MINT:MINT-325299
STRING:Q9VCD5 EnsemblMetazoa:FBtr0084542 GeneID:42855
KEGG:dme:Dmel_CG10694 UCSC:CG10694-RA FlyBase:FBgn0039147
InParanoid:Q9VCD5 OMA:GRIMEDE OrthoDB:EOG4C5B1F GenomeRNAi:42855
NextBio:830940 Uniprot:Q9VCD5
Length = 290
Score = 122 (48.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 35/103 (33%), Positives = 55/103 (53%)
Query: 17 QQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
Q+T++ ++ +EV+ LK+K+ + AE +LIY+G+I+ D LSEY I E K I
Sbjct: 10 QRTITLEMNESQEVRALKQKLGNLPEVAMPAENLQLIYSGRIMEDAMPLSEYRIAEDKII 69
Query: 76 VVMLSKP--KPTPAPYSGPSDPTQ--PAGQESEATRPATATSD 114
V+M K K +P P+ P P +E P+ A +D
Sbjct: 70 VLMGKKKVDKSSPEEKVAPTPPLAAGPNVLRTEDVVPSLAPND 112
Score = 97 (39.2 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 130 ESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLN 188
++ D L L +MR ++ QNPEL+ ++ ++ +++PA E+ NQE + M++
Sbjct: 167 QTSDQLQQLMADLNITRMREMINQNPELIHRLMNRLAETDPATFEVFQRNQEELMNMIS 225
>SGD|S000004889 [details] [associations]
symbol:DSK2 "Nuclear-enriched ubiquitin-like
polyubiquitin-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0030433 "ER-associated protein catabolic process"
evidence=IMP] [GO:0030674 "protein binding, bridging"
evidence=IMP;IPI] [GO:0005634 "nucleus" evidence=IEA;IC]
[GO:0007103 "spindle pole body duplication associated with nuclear
envelope" evidence=IGI] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR009060 Pfam:PF00240 Pfam:PF00627 SMART:SM00213
SGD:S000004889 Prosite:PS00299 GO:GO:0005634 GO:GO:0030674
EMBL:BK006946 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
GO:GO:0030433 EMBL:Z49704 InterPro:IPR019955 PROSITE:PS50053
SUPFAM:SSF46934 InterPro:IPR019954 eggNOG:COG5272 GO:GO:0007103
EMBL:L40587 HOGENOM:HOG000216678 KO:K04523 OMA:PSASMFG
OrthoDB:EOG4T7CCF InterPro:IPR006636 InterPro:IPR015496
PANTHER:PTHR10677 SMART:SM00727 PIR:S54583 RefSeq:NP_014003.1
PDB:1WR1 PDB:2BWB PDB:2BWE PDB:2BWF PDB:3M63 PDBsum:1WR1
PDBsum:2BWB PDBsum:2BWE PDBsum:2BWF PDBsum:3M63
ProteinModelPortal:P48510 SMR:P48510 DIP:DIP-4398N IntAct:P48510
MINT:MINT-548016 STRING:P48510 PaxDb:P48510 PeptideAtlas:P48510
EnsemblFungi:YMR276W GeneID:855319 KEGG:sce:YMR276W
GeneTree:ENSGT00390000005720 EvolutionaryTrace:P48510
NextBio:979020 Genevestigator:P48510 GermOnline:YMR276W
Uniprot:P48510
Length = 373
Score = 128 (50.1 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 32/103 (31%), Positives = 52/103 (50%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
Q++W+ V+ + V Q KE I G +A Q+LIY+GKIL DDQ + Y+I +
Sbjct: 11 QDKWEVNVAP---ESTVLQFKEAINKANGIP-VAN-QRLIYSGKILKDDQTVESYHIQDG 65
Query: 73 KFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDS 115
+ ++ S+PKP A +G ++ T P ++ S
Sbjct: 66 HSVHLVKSQPKPQTASAAGANNATATGAAAGTGATPNMSSGQS 108
Score = 51 (23.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 15/63 (23%), Positives = 28/63 (44%)
Query: 131 SEDPLAFLRTQPQFQQMRTVVQQNPELLPTVLQ---QIGQSNPALLELISHNQEAFVRML 187
++D L + P FQ + NP++L ++Q Q+ P +++ F +ML
Sbjct: 147 NQDELLRMMENPIFQSQMNEMLSNPQMLDFMIQSNPQLQAMGPQARQMLQ--SPMFRQML 204
Query: 188 NEP 190
P
Sbjct: 205 TNP 207
Score = 43 (20.2 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 177 SHNQEAFVRMLNEPVAGDRRNK 198
S+NQ+ +RM+ P+ + N+
Sbjct: 145 SNNQDELLRMMENPIFQSQMNE 166
>TAIR|locus:2059682 [details] [associations]
symbol:DSK2 "AT2G17200" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR009060 Pfam:PF00240 Pfam:PF00627 SMART:SM00213
GO:GO:0005829 EMBL:CP002685 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
InterPro:IPR006636 InterPro:IPR015496 PANTHER:PTHR10677
SMART:SM00727 EMBL:AC007127 HSSP:Q9UHD9 OMA:MARNPSM EMBL:AY142486
IPI:IPI00538993 PIR:C84549 RefSeq:NP_179311.1 UniGene:At.22593
ProteinModelPortal:Q9SII8 SMR:Q9SII8 IntAct:Q9SII8 STRING:Q9SII8
PRIDE:Q9SII8 EnsemblPlants:AT2G17200.1 GeneID:816225
KEGG:ath:AT2G17200 TAIR:At2g17200 InParanoid:Q9SII8
PhylomeDB:Q9SII8 ProtClustDB:CLSN2693479 Genevestigator:Q9SII8
Uniprot:Q9SII8
Length = 551
Score = 128 (50.1 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 48/179 (26%), Positives = 80/179 (44%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI-VVMLSKPKPTPA 87
V+ KE + + S+ A Q+LIY G+IL DDQ L Y + I +V S P P
Sbjct: 40 VESFKELVA--QSSDVPANQQRLIYKGRILKDDQTLLSYGLQADHTIHMVRGSAPSSAPP 97
Query: 88 PYSGPSDPTQPA-----GQESEATRPATATSDSMLKVFFERVNPYGGESEDPLAFLRTQP 142
P S T P+ G ++ + + +S+ NP GG + F P
Sbjct: 98 PAPAASQTTAPSVTRGVGSDNSSNLGGASPGESLFPGL--GFNPLGGGNAMSGLFGAGLP 155
Query: 143 QFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVR--MLNEPVAGDRRNKN 199
Q + + QNP ++ ++ + PA+ L++ N E F+R ++N P + ++N
Sbjct: 156 DLVQTQQQLAQNPNMIRDMM-----NTPAIQNLMN-NPE-FMRSMIMNNPQMRELVDRN 207
>GENEDB_PFALCIPARUM|PF10_0114 [details] [associations]
symbol:PF10_0114 "DNA repair protein RAD23,
putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
DNA binding" evidence=ISS] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
EMBL:AE014185 SUPFAM:SSF46934 GO:GO:0006289 KO:K10839 HSSP:P54725
Gene3D:1.10.10.540 SUPFAM:SSF101238 HOGENOM:HOG000172162
RefSeq:XP_001347399.1 ProteinModelPortal:Q8IJS8 IntAct:Q8IJS8
MINT:MINT-1571420 EnsemblProtists:PF10_0114:mRNA GeneID:810272
KEGG:pfa:PF10_0114 EuPathDB:PlasmoDB:PF3D7_1011700 OMA:NENEMES
ProtClustDB:CLSZ2515023 Uniprot:Q8IJS8
Length = 389
Score = 93 (37.8 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
R F +R + NP+ LP +LQ IG+++P+ LE I NQ F+ L
Sbjct: 236 RNSTFFNAIRDMALSNPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAAL 284
Score = 74 (31.1 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 15/60 (25%), Positives = 39/60 (65%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++D + + LK+K++ ++ ++ QKLI++GKIL D+ ++ + ++ ++VM+++
Sbjct: 16 NVDPDDSILDLKKKVEVVL-ADMPSDKQKLIFSGKILKDEDKATDI-LKDNDTVIVMVTR 73
>UNIPROTKB|Q8IJS8 [details] [associations]
symbol:PF10_0114 "DNA repair protein RAD23, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
binding" evidence=ISS] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
EMBL:AE014185 SUPFAM:SSF46934 GO:GO:0006289 KO:K10839 HSSP:P54725
Gene3D:1.10.10.540 SUPFAM:SSF101238 HOGENOM:HOG000172162
RefSeq:XP_001347399.1 ProteinModelPortal:Q8IJS8 IntAct:Q8IJS8
MINT:MINT-1571420 EnsemblProtists:PF10_0114:mRNA GeneID:810272
KEGG:pfa:PF10_0114 EuPathDB:PlasmoDB:PF3D7_1011700 OMA:NENEMES
ProtClustDB:CLSZ2515023 Uniprot:Q8IJS8
Length = 389
Score = 93 (37.8 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 139 RTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRML 187
R F +R + NP+ LP +LQ IG+++P+ LE I NQ F+ L
Sbjct: 236 RNSTFFNAIRDMALSNPQRLPELLQMIGRTDPSFLEYIRQNQTEFLAAL 284
Score = 74 (31.1 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 15/60 (25%), Positives = 39/60 (65%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSK 81
++D + + LK+K++ ++ ++ QKLI++GKIL D+ ++ + ++ ++VM+++
Sbjct: 16 NVDPDDSILDLKKKVEVVL-ADMPSDKQKLIFSGKILKDEDKATDI-LKDNDTVIVMVTR 73
>TAIR|locus:2059677 [details] [associations]
symbol:DSK2a "AT2G17190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR009060
Pfam:PF00240 Pfam:PF00627 SMART:SM00213 EMBL:CP002685
GenomeReviews:CT485783_GR InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
eggNOG:COG5272 KO:K04523 InterPro:IPR006636 InterPro:IPR015496
PANTHER:PTHR10677 SMART:SM00727 EMBL:AC007127 HOGENOM:HOG000234878
OMA:WGATAGQ HSSP:Q9UHD9 ProtClustDB:CLSN2693479 EMBL:AF360159
EMBL:AY042828 EMBL:AY081450 EMBL:AY113886 EMBL:AK228616
IPI:IPI00531268 PIR:B84549 RefSeq:NP_565407.1 UniGene:At.21851
ProteinModelPortal:Q9SII9 SMR:Q9SII9 PaxDb:Q9SII9 PRIDE:Q9SII9
ProMEX:Q9SII9 EnsemblPlants:AT2G17190.1 GeneID:816224
KEGG:ath:AT2G17190 TAIR:At2g17190 InParanoid:Q9SII9
PhylomeDB:Q9SII9 ArrayExpress:Q9SII9 Genevestigator:Q9SII9
Uniprot:Q9SII9
Length = 538
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 51/182 (28%), Positives = 80/182 (43%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V+ KE I + S+ A Q+LIY G+IL DDQ L Y + ++ V M+ P
Sbjct: 40 VESFKELIA--QNSDVPANQQRLIYKGRILKDDQTLLSYGL-QADHTVHMVRGFVP---- 92
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSML---KVFFERV--NPYGGESEDPLAFLRTQPQ 143
S PS P AG ++ A + + S L + F + NP GG + F P
Sbjct: 93 -SSPSAPAANAGNQTTAPQAVGSNDSSNLGGGESLFPGLGFNPLGGGNAMAGLFGSGLPD 151
Query: 144 FQQMRTVVQQNPELL---------------PTVLQQIGQSNPALLELISHNQEAFVRMLN 188
+Q + + QNP ++ P ++ + +NP + EL+ N E +LN
Sbjct: 152 LEQAQQQLAQNPNMIREMMNTPAIQNLMNNPEFMRSMIMNNPQMRELVDRNPE-LGHVLN 210
Query: 189 EP 190
+P
Sbjct: 211 DP 212
>UNIPROTKB|Q6PA26 [details] [associations]
symbol:Bag6-b "Large proline-rich protein bag6-B"
species:8355 "Xenopus laevis" [GO:0001822 "kidney development"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0007130 "synaptonemal complex
assembly" evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
[GO:0007420 "brain development" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0018393 "internal peptidyl-lysine
acetylation" evidence=ISS] [GO:0030324 "lung development"
evidence=ISS] [GO:0031593 "polyubiquitin binding" evidence=ISS]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0042771 "intrinsic
apoptotic signaling pathway in response to DNA damage by p53 class
mediator" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] [GO:0045861 "negative regulation of proteolysis"
evidence=ISS] [GO:0050821 "protein stabilization" evidence=ISS]
[GO:0070059 "intrinsic apoptotic signaling pathway in response to
endoplasmic reticulum stress" evidence=ISS] [GO:0070628 "proteasome
binding" evidence=ISS] [GO:0071816 "tail-anchored membrane protein
insertion into ER membrane" evidence=ISS] [GO:0071818 "BAT3
complex" evidence=ISS] InterPro:IPR000626 Pfam:PF00240
SMART:SM00213 Prosite:PS00299 GO:GO:0005634 GO:GO:0050821
GO:GO:0007420 GO:GO:0042771 GO:GO:0030324 GO:GO:0006810
GO:GO:0007283 GO:GO:0016568 GO:GO:0043022 GO:GO:0009790
GO:GO:0001822 GO:GO:0070628 GO:GO:0006511 GO:GO:0031593
GO:GO:0070059 InterPro:IPR019955 PROSITE:PS50053 HSSP:Q862M4
HOVERGEN:HBG002193 GO:GO:0071818 GO:GO:0018393 GO:GO:0032435
GO:GO:0007130 GO:GO:0071816 InterPro:IPR021925 Pfam:PF12057
EMBL:BC060479 RefSeq:NP_001083439.1 UniGene:Xl.3743
ProteinModelPortal:Q6PA26 SMR:Q6PA26 PRIDE:Q6PA26 GeneID:398926
KEGG:xla:398926 CTD:398926 Xenbase:XB-GENE-865204 Uniprot:Q6PA26
Length = 1116
Score = 125 (49.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
M A++ D+T V+ E VK+ K I S G E Q+LIY G++L +
Sbjct: 1 MAANEKMDVTVKTLDSQTRTFTVEAEILVKEFKAHISSAVG--ITPEKQRLIYQGRVLQE 58
Query: 61 DQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEA 105
D+ L+EYN+D K I ++ P T SGPS + + S A
Sbjct: 59 DKKLNEYNVD-GKVIHLVERAPPQTQTSTSGPSTSSSTSPSSSNA 102
>ZFIN|ZDB-GENE-060825-176 [details] [associations]
symbol:zgc:153389 "zgc:153389" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000626 Pfam:PF00240
SMART:SM00213 ZFIN:ZDB-GENE-060825-176 InterPro:IPR019955
PROSITE:PS50053 eggNOG:COG5272 EMBL:BC122262 IPI:IPI00491305
RefSeq:NP_001038845.1 UniGene:Dr.26102 ProteinModelPortal:Q0P460
SMR:Q0P460 GeneID:751663 KEGG:dre:751663 HOGENOM:HOG000197776
HOVERGEN:HBG096325 InParanoid:Q0P460 NextBio:20917812
Uniprot:Q0P460
Length = 156
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
VKQ KE I + E + Q+LIY GK+L D++ L+EYN+D ++ ++ +P P +
Sbjct: 29 VKQFKEHIAASV--EISVDKQRLIYQGKVLQDERTLTEYNVDGK--VIHLVERPPPQSSQ 84
Query: 89 YSG 91
G
Sbjct: 85 PGG 87
>GENEDB_PFALCIPARUM|PF13_0346 [details] [associations]
symbol:PF13_0346 "ubiquitin/ribosomal fusion
protein uba52 homologue, putative" species:5833 "Plasmodium
falciparum" [GO:0031386 "protein tag" evidence=ISS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR000626 InterPro:IPR001975 Pfam:PF00240 Pfam:PF01020
SMART:SM00213 Prosite:PS00299 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0006511 InterPro:IPR019955 PROSITE:PS50053
HSSP:Q862M4 InterPro:IPR019954 EMBL:AL844509 InterPro:IPR019956
PRINTS:PR00348 HOGENOM:HOG000233942 KO:K02927 OMA:QKYNCEK
ProtClustDB:CLSZ2456930 RefSeq:XP_001350369.1
ProteinModelPortal:Q8ID50 SMR:Q8ID50 IntAct:Q8ID50
MINT:MINT-1633238 PRIDE:Q8ID50 EnsemblProtists:PF13_0346:mRNA
GeneID:814305 KEGG:pfa:PF13_0346 EuPathDB:PlasmoDB:PF3D7_1365900
Uniprot:Q8ID50
Length = 128
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LDVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
>UNIPROTKB|Q8ID50 [details] [associations]
symbol:PF13_0346 "60S ribosomal protein L40/UBI, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISS]
InterPro:IPR000626 InterPro:IPR001975 Pfam:PF00240 Pfam:PF01020
SMART:SM00213 Prosite:PS00299 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0006511 InterPro:IPR019955 PROSITE:PS50053
HSSP:Q862M4 InterPro:IPR019954 EMBL:AL844509 InterPro:IPR019956
PRINTS:PR00348 HOGENOM:HOG000233942 KO:K02927 OMA:QKYNCEK
ProtClustDB:CLSZ2456930 RefSeq:XP_001350369.1
ProteinModelPortal:Q8ID50 SMR:Q8ID50 IntAct:Q8ID50
MINT:MINT-1633238 PRIDE:Q8ID50 EnsemblProtists:PF13_0346:mRNA
GeneID:814305 KEGG:pfa:PF13_0346 EuPathDB:PlasmoDB:PF3D7_1365900
Uniprot:Q8ID50
Length = 128
Score = 95 (38.5 bits), Expect = 0.00014, P = 0.00014
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ LDV+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LDVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
>ASPGD|ASPL0000027269 [details] [associations]
symbol:AN5451 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
[GO:0042177 "negative regulation of protein catabolic process"
evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR009060 Pfam:PF00240 Pfam:PF00627 SMART:SM00213
EMBL:BN001305 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
EMBL:AACD01000094 eggNOG:COG5272 HOGENOM:HOG000216678 KO:K04523
OrthoDB:EOG4T7CCF InterPro:IPR006636 InterPro:IPR015496
PANTHER:PTHR10677 SMART:SM00727 RefSeq:XP_663055.1
ProteinModelPortal:Q5B1X9 SMR:Q5B1X9 STRING:Q5B1X9
EnsemblFungi:CADANIAT00003638 GeneID:2871742 KEGG:ani:AN5451.2
OMA:EFERNIE Uniprot:Q5B1X9
Length = 440
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 47/180 (26%), Positives = 85/180 (47%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVM---L 79
L V +LKEK+ S ++ AE Q+LIY+G++L D+ L+ Y I + I ++
Sbjct: 28 LPASTPVSELKEKLSSSDYADTPAERQRLIYSGRVLKDNDTLATYKIKDGHTIHLVKSAA 87
Query: 80 SKPKPTPAPYSGPSDPTQPAGQESEATRPATATSDSMLKVFFERVNPYGGESEDPLA--F 137
S +P A + PS T T A T ++ L Y G ++ P A F
Sbjct: 88 SNQRPAAAAAATPSSSTPNPTNTGVPTNLAAGTGNNPLAGLTGA--RYAGFAQLPGAGMF 145
Query: 138 -----LRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPVA 192
+ P + M +++ NP++ +++ + Q NPA+++++ Q +R + P+A
Sbjct: 146 GPDGGMGPPPDAESMLNMLE-NPQV-QSLMNEALQ-NPAMIDMMIQ-QNPLLR--DNPMA 199
>RGD|1560997 [details] [associations]
symbol:RGD1560997 "similar to ribosomal protein S27a"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000626 InterPro:IPR002906 Pfam:PF00240 Pfam:PF01599
SMART:SM00213 RGD:1560997 Prosite:PS00299 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 InterPro:IPR019955 PROSITE:PS50053
InterPro:IPR019954 InterPro:IPR019956 PRINTS:PR00348
GeneTree:ENSGT00550000074763 IPI:IPI00391648
Ensembl:ENSRNOT00000051805 Uniprot:F1M927
Length = 155
Score = 104 (41.7 bits), Expect = 0.00018, P = 0.00018
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 14 NQWQ-QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
+ W+ QT+ L+V+ + ++ +K KIQ E+G + Q+L++AGK L D + LS+YNI
Sbjct: 6 SMWEGQTIM-LEVEPSDTIENVKAKIQDEEGIP--PDQQRLVFAGKQLEDGRTLSDYNIQ 62
Query: 71 ESKFIVVML---SKPKPTPAPYSGP 92
+ + ++L S K Y+ P
Sbjct: 63 KESMLHLVLRLRSGAKKRKKSYTTP 87
>WB|WBGene00006728 [details] [associations]
symbol:ubq-2 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] InterPro:IPR000626 InterPro:IPR001975
Pfam:PF00240 Pfam:PF01020 SMART:SM00213 Prosite:PS00299
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006412 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
eggNOG:COG5272 EMBL:Z82083 InterPro:IPR019956 PRINTS:PR00348
HOGENOM:HOG000233942 KO:K02927 GeneTree:ENSGT00700000104456
OMA:QKYNCEK EMBL:L31492 PIR:T27638 RefSeq:NP_499695.1
ProteinModelPortal:P49632 SMR:P49632 STRING:P49632 PaxDb:P49632
EnsemblMetazoa:ZK1010.1.1 EnsemblMetazoa:ZK1010.1.2 GeneID:176718
KEGG:cel:CELE_ZK1010.1 UCSC:ZK1010.1.1 CTD:176718 WormBase:ZK1010.1
NextBio:893724 Uniprot:P49632
Length = 128
Score = 93 (37.8 bits), Expect = 0.00023, P = 0.00023
Identities = 20/63 (31%), Positives = 40/63 (63%)
Query: 18 QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIV 76
+T++ ++ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTITLEVEASDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLH 68
Query: 77 VML 79
++L
Sbjct: 69 LVL 71
>DICTYBASE|DDB_G0267452 [details] [associations]
symbol:sonA "ubiquilin domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR009060 Pfam:PF00240 Pfam:PF00627 SMART:SM00213
dictyBase:DDB_G0267452 Prosite:PS00299 GO:GO:0007275
GenomeReviews:CM000150_GR GO:GO:0045335 EMBL:AAFI02000003
InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
PROSITE:PS50053 SUPFAM:SSF46934 eggNOG:COG5272 KO:K04523
InterPro:IPR006636 InterPro:IPR015496 PANTHER:PTHR10677
SMART:SM00727 InterPro:IPR019956 PRINTS:PR00348 EMBL:AF214118
RefSeq:XP_647439.1 HSSP:P48510 ProteinModelPortal:Q9NIF3
STRING:Q9NIF3 EnsemblProtists:DDB0191158 GeneID:8616246
KEGG:ddi:DDB_G0267452 OMA:NPWASMF ProtClustDB:CLSZ2742967
Uniprot:Q9NIF3
Length = 523
Score = 115 (45.5 bits), Expect = 0.00025, P = 0.00025
Identities = 52/200 (26%), Positives = 87/200 (43%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQ 62
M+ +I T N++ V L + V K K+ + K S A+ Q++IY+G+IL D Q
Sbjct: 1 MVKINIKSSTDNKFDVDVE-LGIT--VADFK-KVIATKCS-IPADQQRIIYSGRILKDHQ 55
Query: 63 ALSEYNIDESKFIVVMLSKPKPTPAPYSG----PSDPTQPAGQESEATRPATATSDSMLK 118
L E I + + ++ P P P PS+ TQP G ++ M++
Sbjct: 56 TLDEIKIQDGHTVHLVKGAAPPPPPPVEQQVPTPSN-TQPQGIPGVPQNINDMMNNPMIQ 114
Query: 119 VFFERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPELLPTVL--QQIGQS-----NPA 171
F ++P F +MR V+ NPE+ + +Q+ QS NP
Sbjct: 115 EMFNS-RMMDSLLDNPDIFRDMMMGNPEMREVLNNNPEMAQMLSDPRQLRQSLEMMRNPE 173
Query: 172 LL-ELISHNQEAFVRMLNEP 190
L+ E++ + A + + N P
Sbjct: 174 LMREMMRNADRAMINIENHP 193
>UNIPROTKB|A4IH17 [details] [associations]
symbol:Bag6 "Large proline-rich protein bag6" species:8364
"Xenopus (Silurana) tropicalis" [GO:0001822 "kidney development"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0007130 "synaptonemal complex
assembly" evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
[GO:0007420 "brain development" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0018393 "internal peptidyl-lysine
acetylation" evidence=ISS] [GO:0030324 "lung development"
evidence=ISS] [GO:0031593 "polyubiquitin binding" evidence=ISS]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0042771 "intrinsic
apoptotic signaling pathway in response to DNA damage by p53 class
mediator" evidence=ISS] [GO:0042981 "regulation of apoptotic
process" evidence=ISS] [GO:0043022 "ribosome binding" evidence=ISS]
[GO:0045861 "negative regulation of proteolysis" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0070059
"intrinsic apoptotic signaling pathway in response to endoplasmic
reticulum stress" evidence=ISS] [GO:0070628 "proteasome binding"
evidence=ISS] [GO:0071816 "tail-anchored membrane protein insertion
into ER membrane" evidence=ISS] [GO:0071818 "BAT3 complex"
evidence=ISS] InterPro:IPR000626 Pfam:PF00240 SMART:SM00213
Prosite:PS00299 GO:GO:0005634 GO:GO:0050821 GO:GO:0007420
GO:GO:0042771 GO:GO:0030324 GO:GO:0006810 GO:GO:0007283
GO:GO:0016568 GO:GO:0043022 GO:GO:0009790 GO:GO:0001822
GO:GO:0070628 GO:GO:0006511 GO:GO:0031593 GO:GO:0070059
InterPro:IPR019955 PROSITE:PS50053 HOVERGEN:HBG002193 GO:GO:0071818
GO:GO:0018393 GO:GO:0032435 GO:GO:0007130 GO:GO:0071816
InterPro:IPR021925 Pfam:PF12057 CTD:7917 EMBL:BC135335
RefSeq:NP_001090878.2 UniGene:Str.41599 ProteinModelPortal:A4IH17
SMR:A4IH17 STRING:A4IH17 GeneID:100038304 KEGG:xtr:100038304
Xenbase:XB-GENE-478689 eggNOG:COG5272 Uniprot:A4IH17
Length = 1129
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+D + VK+ K I S+ G E Q+LIY G++L +D+ L EYN+D +V + P
Sbjct: 17 VDAEITVKEFKTHISSDVGIS--PEKQRLIYQGRVLQEDKKLKEYNVDGKVIHLVERAPP 74
Query: 83 KPTPAPYSGPSDPTQPAGQESEA 105
+ P+ GPS + + S A
Sbjct: 75 QTQPST-GGPSTSSSTSPSSSNA 96
>UNIPROTKB|F2Z4K9 [details] [associations]
symbol:UBB "Polyubiquitin-B" species:9031 "Gallus gallus"
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007144 "female
meiosis I" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0010992 "ubiquitin homeostasis" evidence=IEA]
[GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron
development" evidence=IEA] [GO:0060613 "fat pad development"
evidence=IEA] [GO:0072520 "seminiferous tubule development"
evidence=IEA] [GO:0097009 "energy homeostasis" evidence=IEA]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 Prosite:PS00299
InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
GeneTree:ENSGT00550000074658 InterPro:IPR019956 PRINTS:PR00348
EMBL:AADN02025813 EMBL:AADN02034856 EMBL:AADN02025812
IPI:IPI00581002 SMR:F2Z4K9 Ensembl:ENSGALT00000039511
Ensembl:ENSGALT00000039514 Ensembl:ENSGALT00000039520
Ensembl:ENSGALT00000039523 Ensembl:ENSGALT00000039614
Uniprot:F2Z4K9
Length = 76
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ L+V+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
>UNIPROTKB|Q9PST8 [details] [associations]
symbol:UbI "Polyubiquitin-B" species:9031 "Gallus gallus"
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007144 "female
meiosis I" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0010992 "ubiquitin homeostasis" evidence=IEA]
[GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron
development" evidence=IEA] [GO:0060613 "fat pad development"
evidence=IEA] [GO:0072520 "seminiferous tubule development"
evidence=IEA] [GO:0097009 "energy homeostasis" evidence=IEA]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 Prosite:PS00299
InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
GeneTree:ENSGT00550000074658 InterPro:IPR019956 PRINTS:PR00348
HOGENOM:HOG000233942 UniGene:Gga.39142 EMBL:AADN02025813
EMBL:AADN02034856 EMBL:AADN02025812 EMBL:U57603 IPI:IPI00594278
STRING:Q9PST8 Ensembl:ENSGALT00000039509 Ensembl:ENSGALT00000039513
Ensembl:ENSGALT00000039519 Ensembl:ENSGALT00000039522
Ensembl:ENSGALT00000039613 InParanoid:Q9PST8 Uniprot:Q9PST8
Length = 71
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ L+V+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
>UNIPROTKB|F5H6Q2 [details] [associations]
symbol:UBC "Polyubiquitin-C" species:9606 "Homo sapiens"
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007144 "female
meiosis I" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0010992 "ubiquitin homeostasis" evidence=IEA]
[GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron
development" evidence=IEA] [GO:0060613 "fat pad development"
evidence=IEA] [GO:0072520 "seminiferous tubule development"
evidence=IEA] [GO:0097009 "energy homeostasis" evidence=IEA]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 Prosite:PS00299
InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
InterPro:IPR019956 PRINTS:PR00348 EMBL:AC126309 HGNC:HGNC:12468
ChiTaRS:UBC IPI:IPI01018966 ProteinModelPortal:F5H6Q2 SMR:F5H6Q2
Ensembl:ENST00000535859 UCSC:uc002gyy.3 ArrayExpress:F5H6Q2
Bgee:F5H6Q2 Uniprot:F5H6Q2
Length = 123
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ L+V+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
>UNIPROTKB|J3QS39 [details] [associations]
symbol:UBB "Ubiquitin" species:9606 "Homo sapiens"
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007144 "female
meiosis I" evidence=IEA] [GO:0008585 "female gonad development"
evidence=IEA] [GO:0010992 "ubiquitin homeostasis" evidence=IEA]
[GO:0021888 "hypothalamus gonadotrophin-releasing hormone neuron
development" evidence=IEA] [GO:0060613 "fat pad development"
evidence=IEA] [GO:0072520 "seminiferous tubule development"
evidence=IEA] [GO:0097009 "energy homeostasis" evidence=IEA]
InterPro:IPR000626 Pfam:PF00240 SMART:SM00213 Prosite:PS00299
InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
InterPro:IPR019956 PRINTS:PR00348 EMBL:AC093484 HGNC:HGNC:12463
ChiTaRS:UBB Ensembl:ENST00000578706 Uniprot:J3QS39
Length = 93
Score = 91 (37.1 bits), Expect = 0.00040, P = 0.00040
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ L+V+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LEVEPSDTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
>UNIPROTKB|F6TC96 [details] [associations]
symbol:BAG6 "Large proline-rich protein BAG6" species:9606
"Homo sapiens" [GO:0001822 "kidney development" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0007130 "synaptonemal complex assembly" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0030324 "lung development" evidence=IEA]
[GO:0030544 "Hsp70 protein binding" evidence=IEA] [GO:0031593
"polyubiquitin binding" evidence=IEA] [GO:0032435 "negative
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IEA] [GO:0050821 "protein stabilization"
evidence=IEA] [GO:0070059 "intrinsic apoptotic signaling pathway in
response to endoplasmic reticulum stress" evidence=IEA] [GO:0070628
"proteasome binding" evidence=IEA] InterPro:IPR000626 Pfam:PF00240
SMART:SM00213 Prosite:PS00299 GO:GO:0005737 GO:GO:0050821
GO:GO:0007420 GO:GO:0030324 GO:GO:0007283 GO:GO:0042127
EMBL:AL670886 EMBL:AL805934 EMBL:BX511262 EMBL:CR354443
EMBL:CR753842 EMBL:CR759761 GO:GO:0009790 GO:GO:0001822
GO:GO:0006511 EMBL:AL662847 EMBL:AL662801 EMBL:CR753892
GO:GO:0070059 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0032435
GO:GO:0007130 HGNC:HGNC:13919 ChiTaRS:BAG6 InterPro:IPR019954
IPI:IPI00792708 SMR:F6TC96 Ensembl:ENST00000419409
Ensembl:ENST00000420098 Ensembl:ENST00000433146
Ensembl:ENST00000437731 Ensembl:ENST00000442112
Ensembl:ENST00000447798 Ensembl:ENST00000454165 Uniprot:F6TC96
Length = 158
Score = 102 (41.0 bits), Expect = 0.00042, P = 0.00042
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
Q VK+ KE I + +E Q+LIY G++L DD+ L EYN+ K I ++ P T
Sbjct: 36 QMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNVG-GKVIHLVERAPPQT 92
Query: 86 PAPYSGPSDPTQPA 99
P SG S T A
Sbjct: 93 HLP-SGASSGTGSA 105
>MGI|MGI:2150152 [details] [associations]
symbol:Ubqln4 "ubiquilin 4" species:10090 "Mus musculus"
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0031593 "polyubiquitin
binding" evidence=ISO] [GO:0032434 "regulation of proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR009060
Pfam:PF00240 Pfam:PF00627 SMART:SM00213 MGI:MGI:2150152
Prosite:PS00299 GO:GO:0005829 GO:GO:0005634 GO:GO:0048471
GO:GO:0005789 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
eggNOG:COG5272 GO:GO:0032434 KO:K04523 InterPro:IPR006636
InterPro:IPR015496 PANTHER:PTHR10677 SMART:SM00727
GeneTree:ENSGT00390000005720 GO:GO:0031597 GO:GO:0031595
HOVERGEN:HBG064537 OrthoDB:EOG48KRBD HOGENOM:HOG000234878 CTD:56893
EMBL:AB040050 EMBL:BC017686 EMBL:AK077511 IPI:IPI00118575
RefSeq:NP_277068.1 UniGene:Mm.303059 UniGene:Mm.472338 PDB:2KNZ
PDBsum:2KNZ ProteinModelPortal:Q99NB8 SMR:Q99NB8 IntAct:Q99NB8
STRING:Q99NB8 PhosphoSite:Q99NB8 PaxDb:Q99NB8 PRIDE:Q99NB8
Ensembl:ENSMUST00000008748 GeneID:94232 KEGG:mmu:94232
UCSC:uc008pvq.1 InParanoid:Q99NB8 OMA:WGATAGQ
EvolutionaryTrace:Q99NB8 NextBio:352243 Bgee:Q99NB8
CleanEx:MM_UBQLN4 Genevestigator:Q99NB8
GermOnline:ENSMUSG00000008604 Uniprot:Q99NB8
Length = 596
Score = 99 (39.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPT 85
Q VK+ KE+I ++ + LI+AGKIL D LS++ I + + +++ P+
Sbjct: 31 QASVKEFKEEISRRFKAQQ--DQLVLIFAGKILKDGDTLSQHGIKDGLTVHLVIKTPQKA 88
Query: 86 PAPYSGP-SDPTQPAGQESEATRPAT 110
P + S P+ P + +T PA+
Sbjct: 89 QDPVTAAASPPSTPDSASAPSTTPAS 114
Score = 54 (24.1 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 138 LRTQPQFQQMRTVVQQNPELL-----PTVLQQIGQ--SNPALLELISHNQEAFVRMLNEP 190
+ PQ QQ+ +++NPE+ P +++Q + NPA+++ + NQ+ + L E
Sbjct: 214 IMANPQMQQL---MERNPEISHMLNNPELMRQTMELARNPAMMQEMMRNQDRALSNL-ES 269
Query: 191 VAG 193
V G
Sbjct: 270 VPG 272
>RGD|620745 [details] [associations]
symbol:Ubqln1 "ubiquilin 1" species:10116 "Rattus norvegicus"
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0001666
"response to hypoxia" evidence=ISO;ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS;IDA] [GO:0005783
"endoplasmic reticulum" evidence=ISO;ISS] [GO:0006915 "apoptotic
process" evidence=ISO;ISS] [GO:0019900 "kinase binding"
evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0031396 "regulation of protein ubiquitination"
evidence=ISO;ISS] [GO:0043234 "protein complex" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS]
InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR009060
Pfam:PF00240 Pfam:PF00627 SMART:SM00213 RGD:620745 Prosite:PS00299
GO:GO:0005783 GO:GO:0005634 GO:GO:0048471 GO:GO:0006915
GO:GO:0001666 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
GO:GO:0000502 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0031396
SUPFAM:SSF46934 PDB:1KJV PDBsum:1KJV eggNOG:COG5272 KO:K04523
InterPro:IPR006636 InterPro:IPR015496 PANTHER:PTHR10677
SMART:SM00727 CTD:29979 HOVERGEN:HBG064537 OrthoDB:EOG48KRBD
EMBL:D87950 EMBL:BC072477 IPI:IPI00421876 RefSeq:NP_446199.2
UniGene:Rn.94864 ProteinModelPortal:Q9JJP9 SMR:Q9JJP9 STRING:Q9JJP9
PRIDE:Q9JJP9 GeneID:114590 KEGG:rno:114590 UCSC:RGD:620745
HOGENOM:HOG000234878 EvolutionaryTrace:Q9JJP9 NextBio:618741
ArrayExpress:Q9JJP9 Genevestigator:Q9JJP9 Uniprot:Q9JJP9
Length = 582
Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
Identities = 47/179 (26%), Positives = 90/179 (50%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML---SKPKPT 85
V+Q KE+I S++ ++ + LI+AGKIL D LS++ I + + +++ ++P+
Sbjct: 49 VQQFKEEI-SKRFKSHIDQLV-LIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDN 106
Query: 86 PAPYS---GPSDPTQPAGQESEATRPATATSDSMLKVF-FERVNPYGGESEDPLAFLRTQ 141
A + G S + PA + + PA +S + + ++ G + + + L++Q
Sbjct: 107 SAQQTNTTGNSVTSSPAPDSNPTSGPAANSSFGLGGLGGLAGLSSLGLNTTN-FSELQSQ 165
Query: 142 PQFQ-----QMRTVVQQNP---ELL--PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
Q Q +M + +NP +L P +++Q+ +NP + +LI N E MLN P
Sbjct: 166 MQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE-ISHMLNNP 223
>UNIPROTKB|Q9UMX0 [details] [associations]
symbol:UBQLN1 "Ubiquilin-1" species:9606 "Homo sapiens"
[GO:0000502 "proteasome complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0019900 "kinase binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IMP;IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA;NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031396 "regulation of protein
ubiquitination" evidence=IDA] [GO:0001666 "response to hypoxia"
evidence=IMP] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043234 "protein
complex" evidence=IDA] InterPro:IPR000449 InterPro:IPR000626
InterPro:IPR009060 InterPro:IPR016024 Pfam:PF00240 Pfam:PF00627
SMART:SM00213 Prosite:PS00299 GO:GO:0005783 GO:GO:0005634
GO:GO:0048471 GO:GO:0006915 GO:GO:0043234 SUPFAM:SSF48371
GO:GO:0001666 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
GO:GO:0000502 EMBL:CH471089 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0031396 SUPFAM:SSF46934 eggNOG:COG5272 KO:K04523
InterPro:IPR006636 InterPro:IPR015496 PANTHER:PTHR10677
SMART:SM00727 EMBL:AL354920 PDB:2JY6 PDBsum:2JY6 EMBL:AF176069
EMBL:AF293384 EMBL:AB035275 EMBL:AL136643 EMBL:BC010066
EMBL:BC039294 EMBL:AK074535 IPI:IPI00071180 IPI:IPI00099550
RefSeq:NP_038466.2 RefSeq:NP_444295.1 UniGene:Hs.9589 PDB:2JY5
PDB:2KLC PDBsum:2JY5 PDBsum:2KLC ProteinModelPortal:Q9UMX0
SMR:Q9UMX0 IntAct:Q9UMX0 MINT:MINT-150317 STRING:Q9UMX0
PhosphoSite:Q9UMX0 DMDM:48475013 REPRODUCTION-2DPAGE:IPI00071180
PaxDb:Q9UMX0 PRIDE:Q9UMX0 Ensembl:ENST00000257468
Ensembl:ENST00000376395 GeneID:29979 KEGG:hsa:29979 UCSC:uc004amv.3
UCSC:uc004amw.3 CTD:29979 GeneCards:GC09M086274 HGNC:HGNC:12508
HPA:CAB037256 MIM:605046 neXtProt:NX_Q9UMX0 PharmGKB:PA37155
HOVERGEN:HBG064537 InParanoid:Q9UMX0 OMA:MQQITEN OrthoDB:EOG48KRBD
PhylomeDB:Q9UMX0 ChiTaRS:UBQLN1 EvolutionaryTrace:Q9UMX0
GenomeRNAi:29979 NextBio:52732 Bgee:Q9UMX0 CleanEx:HS_UBQLN1
Genevestigator:Q9UMX0 GermOnline:ENSG00000135018 Uniprot:Q9UMX0
Length = 589
Score = 113 (44.8 bits), Expect = 0.00050, P = 0.00050
Identities = 49/179 (27%), Positives = 78/179 (43%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V+Q KE+I S + LI+AGKIL D LS++ I + V ++ K + P
Sbjct: 58 VQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDG-LTVHLVIKTQNRPQD 114
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFER--VNPYGGESE---DPLAFLRTQPQ 143
+S T + + +T + +TS S F + G S + F Q Q
Sbjct: 115 HSAQQTNTAGSNVTTSSTPNSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQ 174
Query: 144 FQ-------QMRTVVQQNP---ELL--PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
Q +M + +NP +L P +++Q+ +NP + +LI N E MLN P
Sbjct: 175 MQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE-ISHMLNNP 232
>UNIPROTKB|Q9YHD3 [details] [associations]
symbol:Bag6-a "Large proline-rich protein bag6-A"
species:8355 "Xenopus laevis" [GO:0001822 "kidney development"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0007130 "synaptonemal complex
assembly" evidence=ISS] [GO:0007283 "spermatogenesis" evidence=ISS]
[GO:0007420 "brain development" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0018393 "internal peptidyl-lysine
acetylation" evidence=ISS] [GO:0030324 "lung development"
evidence=ISS] [GO:0031593 "polyubiquitin binding" evidence=ISS]
[GO:0032435 "negative regulation of proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0042771 "intrinsic
apoptotic signaling pathway in response to DNA damage by p53 class
mediator" evidence=ISS] [GO:0043022 "ribosome binding"
evidence=ISS] [GO:0045861 "negative regulation of proteolysis"
evidence=ISS] [GO:0050821 "protein stabilization" evidence=ISS]
[GO:0070059 "intrinsic apoptotic signaling pathway in response to
endoplasmic reticulum stress" evidence=ISS] [GO:0070628 "proteasome
binding" evidence=ISS] [GO:0071816 "tail-anchored membrane protein
insertion into ER membrane" evidence=ISS] [GO:0071818 "BAT3
complex" evidence=ISS] InterPro:IPR000626 Pfam:PF00240
SMART:SM00213 Prosite:PS00299 GO:GO:0005634 GO:GO:0050821
GO:GO:0007420 GO:GO:0042771 GO:GO:0030324 GO:GO:0006810
GO:GO:0007283 GO:GO:0016568 GO:GO:0043022 GO:GO:0009790
GO:GO:0001822 GO:GO:0070628 GO:GO:0006511 GO:GO:0031593
GO:GO:0070059 InterPro:IPR019955 PROSITE:PS50053 EMBL:AF098511
PIR:T30561 RefSeq:NP_001080008.1 UniGene:Xl.422 HSSP:Q862M4
ProteinModelPortal:Q9YHD3 SMR:Q9YHD3 GeneID:379698 KEGG:xla:379698
CTD:379698 Xenbase:XB-GENE-6255172 HOVERGEN:HBG002193 GO:GO:0071818
GO:GO:0018393 GO:GO:0032435 GO:GO:0007130 GO:GO:0071816
InterPro:IPR021925 Pfam:PF12057 Uniprot:Q9YHD3
Length = 1135
Score = 115 (45.5 bits), Expect = 0.00066, P = 0.00066
Identities = 32/105 (30%), Positives = 50/105 (47%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
M A++ ++T V+ E VK K I S+ G E Q+LIY G++L +
Sbjct: 1 MAANEKMEVTVKTLDSQTRTFTVETEISVKDFKAHISSDVGIS--PEKQRLIYQGRVLQE 58
Query: 61 DQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPTQPAGQESEA 105
D+ L EYN+D +V + P+ P+ GPS + + S A
Sbjct: 59 DKKLKEYNVDGKVIHLVERAPPQTQPST-GGPSTSSSTSPTSSNA 102
>DICTYBASE|DDB_G0278711 [details] [associations]
symbol:nedd8 "ubiquitin-like protein Nedd8"
species:44689 "Dictyostelium discoideum" [GO:0003674
"molecular_function" evidence=ND] [GO:0051438 "regulation of
ubiquitin-protein ligase activity" evidence=ISS] [GO:0045116
"protein neddylation" evidence=ISS] [GO:0031647 "regulation of
protein stability" evidence=ISS] [GO:0030162 "regulation of
proteolysis" evidence=ISS] [GO:0019005 "SCF ubiquitin ligase
complex" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA;ISS] InterPro:IPR000626 Pfam:PF00240
SMART:SM00213 dictyBase:DDB_G0278711 Prosite:PS00299 GO:GO:0005829
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0008283
EMBL:AAFI02000023 GO:GO:0030162 GO:GO:0031647 GO:GO:0019005
InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
eggNOG:COG5272 GO:GO:0045116 GO:GO:0051438 InterPro:IPR019956
PRINTS:PR00348 KO:K12158 OMA:EPTDKVD RefSeq:XP_642449.2 HSSP:Q15843
ProteinModelPortal:Q54XV3 SMR:Q54XV3 STRING:Q54XV3
EnsemblProtists:DDB0238041 GeneID:8621655 KEGG:ddi:DDB_G0278711
Uniprot:Q54XV3
Length = 77
Score = 89 (36.4 bits), Expect = 0.00067, P = 0.00067
Identities = 16/58 (27%), Positives = 38/58 (65%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+D ++++++KE+++ ++G Q+LI+ GK + DD+ SEY+I+ + ++L+
Sbjct: 17 IDPTDKIQRIKERVEEKEGIP--PSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLA 72
>RGD|2321712 [details] [associations]
symbol:LOC100360645 "ubiquitin B-like" species:10116 "Rattus
norvegicus" [GO:0007141 "male meiosis I" evidence=IEA] [GO:0007144
"female meiosis I" evidence=IEA] [GO:0008585 "female gonad
development" evidence=IEA] [GO:0010992 "ubiquitin homeostasis"
evidence=IEA] [GO:0021888 "hypothalamus gonadotrophin-releasing
hormone neuron development" evidence=IEA] [GO:0060613 "fat pad
development" evidence=IEA] [GO:0072520 "seminiferous tubule
development" evidence=IEA] [GO:0097009 "energy homeostasis"
evidence=IEA] InterPro:IPR000626 Pfam:PF00240 SMART:SM00213
RGD:2321712 Prosite:PS00299 InterPro:IPR019955 PROSITE:PS50053
InterPro:IPR019954 InterPro:IPR019956 PRINTS:PR00348
IPI:IPI00968459 Ensembl:ENSRNOT00000057671 ArrayExpress:F1M5P0
Uniprot:F1M5P0
Length = 60
Score = 89 (36.4 bits), Expect = 0.00067, P = 0.00067
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 4 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 54
>UNIPROTKB|F1M4U4 [details] [associations]
symbol:F1M4U4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0007141 "male meiosis I" evidence=IEA]
[GO:0007144 "female meiosis I" evidence=IEA] [GO:0008585 "female
gonad development" evidence=IEA] [GO:0010992 "ubiquitin
homeostasis" evidence=IEA] [GO:0021888 "hypothalamus
gonadotrophin-releasing hormone neuron development" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA]
[GO:0060613 "fat pad development" evidence=IEA] [GO:0072520
"seminiferous tubule development" evidence=IEA] [GO:0097009 "energy
homeostasis" evidence=IEA] InterPro:IPR000626 Pfam:PF00240
SMART:SM00213 Prosite:PS00299 InterPro:IPR019955 PROSITE:PS50053
InterPro:IPR019954 GO:GO:0022625 InterPro:IPR019956 PRINTS:PR00348
IPI:IPI00950621 Ensembl:ENSRNOT00000065032 ArrayExpress:F1M4U4
Uniprot:F1M4U4
Length = 59
Score = 89 (36.4 bits), Expect = 0.00067, P = 0.00067
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 27 EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 4 DTIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 54
>UNIPROTKB|I3LSM3 [details] [associations]
symbol:UBQLN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0031396
"regulation of protein ubiquitination" evidence=IEA] [GO:0019900
"kinase binding" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0001666 "response to hypoxia" evidence=IEA] InterPro:IPR000449
InterPro:IPR000626 InterPro:IPR009060 InterPro:IPR016024
Pfam:PF00240 Pfam:PF00627 SMART:SM00213 GO:GO:0005783 GO:GO:0006915
GO:GO:0043234 SUPFAM:SSF48371 GO:GO:0001666 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
GO:GO:0031396 SUPFAM:SSF46934 InterPro:IPR006636 InterPro:IPR015496
PANTHER:PTHR10677 SMART:SM00727 GeneTree:ENSGT00390000005720
OMA:MQQITEN EMBL:FP565760 EMBL:FP476077 Ensembl:ENSSSCT00000027988
Uniprot:I3LSM3
Length = 589
Score = 111 (44.1 bits), Expect = 0.00087, P = 0.00087
Identities = 48/179 (26%), Positives = 77/179 (43%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKPKPTPAP 88
V+Q KE+I S + LI+AGKIL D LS++ I + V ++ K + P
Sbjct: 58 VQQFKEEISKRFKSH--TDQLVLIFAGKILKDQDTLSQHGIHDG-LTVHLVIKTQNRPQD 114
Query: 89 YSGPSDPTQPAGQESEATRPATATSDSMLKVFFER--VNPYGGESE---DPLAFLRTQPQ 143
+S T + + + + +TS S F + G S + F Q Q
Sbjct: 115 HSAQQTNTSGSNATTSSAPSSNSTSGSATSNPFGLGGLGGLAGLSSLGLNTTNFSELQSQ 174
Query: 144 FQ-------QMRTVVQQNP---ELL--PTVLQQIGQSNPALLELISHNQEAFVRMLNEP 190
Q +M + +NP +L P +++Q+ +NP + +LI N E MLN P
Sbjct: 175 MQRQLMSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPE-ISHMLNNP 232
>DICTYBASE|DDB_G0280755 [details] [associations]
symbol:ubqB "ubiquitin/ribosomal protein L40 fusion
protein" species:44689 "Dictyostelium discoideum" [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000626
InterPro:IPR001975 Pfam:PF00240 Pfam:PF01020 SMART:SM00213
dictyBase:DDB_G0280755 Prosite:PS00299 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
InterPro:IPR019955 PROSITE:PS50053 InterPro:IPR019954
eggNOG:COG5272 InterPro:IPR019956 PRINTS:PR00348 EMBL:AAFI02000038
KO:K02927 OMA:QKYNCEK EMBL:X07210 EMBL:M23749 EMBL:X04702
PIR:S00357 RefSeq:XP_641020.1 ProteinModelPortal:P14794
STRING:P14794 PRIDE:P14794 EnsemblProtists:DDB0214925
GeneID:8622722 KEGG:ddi:DDB_G0280755 ProtClustDB:CLSZ2456930
Uniprot:P14794
Length = 128
Score = 92 (37.4 bits), Expect = 0.00092, P = 0.00092
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 18 QTVSHLDVQ--EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFI 75
+T++ L+V+ + ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + +
Sbjct: 11 KTIT-LEVEGSDNIENVKAKIQDKEGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
Query: 76 VVML 79
++L
Sbjct: 68 HLVL 71
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.356 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 203 203 0.00092 111 3 11 23 0.42 33
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 550 (59 KB)
Total size of DFA: 151 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.86u 0.09s 27.95t Elapsed: 00:00:05
Total cpu time: 27.86u 0.09s 27.95t Elapsed: 00:00:05
Start: Thu Aug 15 10:59:11 2013 End: Thu Aug 15 10:59:16 2013