RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4259
(203 letters)
>d2f4mb1 a.189.1.1 (B:275-332) XPC-binding domain of Rad23 homolog B
(Hhr23b) {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 92.8 bits (231), Expect = 5e-26
Identities = 40/58 (68%), Positives = 48/58 (82%)
Query: 134 PLAFLRTQPQFQQMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
PL FLR QPQFQQMR ++QQNP LLP +LQQIG+ NP LL+ IS +QE F++MLNEPV
Sbjct: 1 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPV 58
>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic
reticulum-resident ubiquitin-like domain member 1
protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 62.6 bits (152), Expect = 8e-14
Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 12 TQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI- 69
+ NQ + + D V LK + E Q+LIY+GK+L D Q L +
Sbjct: 14 SPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPK 73
Query: 70 DESKFIVVMLSKPKPTPA 87
E + ++ ++ K P+
Sbjct: 74 QEKRHVLHLVCNVKSGPS 91
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 57.9 bits (140), Expect = 2e-12
Identities = 31/61 (50%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ ++ + VK LKEKI++EKG + + QKLIYAGKILSDD + +Y IDE F+VVM+
Sbjct: 17 IRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMV 76
Query: 80 S 80
+
Sbjct: 77 T 77
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 56.2 bits (135), Expect = 2e-11
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSE-YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+D +E VK LKEKI+SEKG + + QKLIYAGKIL+DD AL EY IDE F+VVM++
Sbjct: 16 DIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVT 75
Query: 81 KPKPTPAPYSGPSDPTQP 98
KPK P +
Sbjct: 76 KPKAVSTPAPATLEHHHH 93
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 56.1 bits (135), Expect = 2e-11
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKIL-SDDQALSEYNIDESKFI 75
+ ++ ++ V LK K + S+ KLIY G++L + LS NI + I
Sbjct: 18 TEELAVARPEDTVGTLKSKYFPGQESQ-----MKLIYQGRLLQDPARTLSSLNITNNCVI 72
Query: 76 VVMLSKPKPTPAPYSGPSDPT 96
S P + S S P+
Sbjct: 73 HCHRSPPGAAVSGPSASSGPS 93
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 53.4 bits (128), Expect = 3e-10
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 29 VKQLKEKIQSEKGSE------YLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLSKP 82
+ + + + +LIY G+ L + L + K V+ L
Sbjct: 39 ASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVAR 98
Query: 83 KPTPAPYSGPSDPTQPAG 100
+ P P S +G
Sbjct: 99 ETLPEPNSQGQRSGPSSG 116
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 50.7 bits (121), Expect = 2e-09
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 3/87 (3%)
Query: 2 GMLAHDISDITQNQWQQTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSD 60
G+ ++ + + + + ++L+ KI G + Y K++ K L
Sbjct: 14 GIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQ--ENYIKIVINKKQLQL 71
Query: 61 DQALSEYNIDESKFIVVMLSKPKPTPA 87
+ L E + + +V+ K P+
Sbjct: 72 GKTLEEQGVAHNVKAMVLELKQSSGPS 98
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 48.1 bits (114), Expect = 2e-08
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 2 GMLAHDISDITQNQWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILS 59
GML + + ++ + T S L V + + + + E G E +++Y ++L+
Sbjct: 7 GMLIT-VYCVRRDLTEVTFS-LQVNPDFELSNFRVLCELESGVPA--EEAQIVYMEQLLT 62
Query: 60 D-DQALSEYNIDESKFIVVMLSKPKPTPAPYSGPSDPT 96
D +L Y + + +V++ P PS P+
Sbjct: 63 DDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPSGPS 100
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 46.7 bits (111), Expect = 3e-08
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
++V E V Q KE I G Q+LIY+GKIL DDQ + Y+I + + ++ S
Sbjct: 15 VNVAPESTVLQFKEAINKANG--IPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 72
Query: 81 K 81
+
Sbjct: 73 Q 73
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 47.2 bits (112), Expect = 4e-08
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 9 SDITQNQWQ---QTVS-HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQAL 64
+ + +W+ Q + L + ++V +K KI A QKL Y G + D +L
Sbjct: 10 NMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEAT--GMPAGKQKLQYEGIFIKDSNSL 67
Query: 65 SEYNIDESKFIVVML 79
+ YN+ I + L
Sbjct: 68 AYYNMANGAVIHLAL 82
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 45.6 bits (108), Expect = 8e-08
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
V + VK+ KE I + +E Q+LIY G++L DD+ L EYN+ +V
Sbjct: 15 FIVGAQMNVKEFKEHIAASVSIP--SEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLV-ER 71
Query: 81 KP 82
P
Sbjct: 72 AP 73
>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 46.0 bits (109), Expect = 1e-07
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 27 EEVKQLKEKIQSE-KGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ LK+ I + + S E LIY G+ L DDQ L Y I + V+
Sbjct: 38 YSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLR 91
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 45.3 bits (107), Expect = 1e-07
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 17 QQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKF 74
+T + DV + +++L+E++ + E Q+L Y GK L + L +Y++ +
Sbjct: 11 SKTCTIEDVSRKATIEELRERVWALFD--VRPECQRLFYRGKQLENGYTLFDYDVGLNDI 68
Query: 75 IVVML 79
I +++
Sbjct: 69 IQLLV 73
>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 90
Score = 45.4 bits (107), Expect = 1e-07
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 17 QQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIY---AGKILSDDQALSEYNIDESK 73
+ +V+ L + V LK+ +++ G E QKL+ GK +D L + +
Sbjct: 18 EYSVTTLSEDDTVLDLKQFLKTLTGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPNT 75
Query: 74 FIVVMLSKPKPTPAPYSG 91
I++M ++ P SG
Sbjct: 76 KIMMMGTRES---GPSSG 90
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 45.3 bits (107), Expect = 1e-07
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
L V+ V +K ++ + +G Q+ ++G+ L+D E I + + V++S
Sbjct: 18 LVVRSTDTVFHMKRRLHAAEG--VEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 75
Query: 81 KPKP 84
+P
Sbjct: 76 QPVQ 79
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 45.6 bits (108), Expect = 2e-07
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 15 QWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
+ +T D +E V +LK ++ + Q+L ++L D + L E
Sbjct: 7 RRHKTTIFTDAKESSTVFELKRIVEGILK--RPPDEQRLYKDDQLLDDGKTLGECGFTSQ 64
>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 101
Score = 44.9 bits (106), Expect = 3e-07
Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 29 VKQLKEKIQSE-----KGSEYLAEYQKLIYAGKILSDDQALSEYNID----ESKFIVVML 79
V LKE + SE + + KLI AGK+L + + + +Y + +
Sbjct: 31 VSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHV 90
Query: 80 SKPKPTPAP 88
P
Sbjct: 91 IIQAPVTEK 99
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 44.1 bits (104), Expect = 3e-07
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 22 HLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
L+V+ ++ +K KIQ ++G + Q+LI+AGK L D + LS+YNI + + ++L
Sbjct: 14 TLEVEPSDTIENVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 43.3 bits (102), Expect = 7e-07
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIY--AGKILSDDQALSEYNIDESKFIVVM 78
+ + V +LK +I + A Q+L +G L D L+ + ++++
Sbjct: 15 VSLSSSMSVSELKAQITQKI--GVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLV 72
Query: 79 LSK 81
+ K
Sbjct: 73 VDK 75
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 43.0 bits (101), Expect = 9e-07
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 15 QWQQTVSHLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
+QT + + V++L+ KIQ Q+L Y GK + D L +Y + +
Sbjct: 9 DGRQTHTVDSLSRLTKVEELRRKIQELFH--VEPGLQRLFYRGKQMEDGHTLFDYEVRLN 66
Query: 73 KFIVVMLSK 81
I +++ +
Sbjct: 67 DTIQLLVRQ 75
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 42.5 bits (100), Expect = 1e-06
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 19 TVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILS-DDQALSEYNIDESKFIVV 77
T + V+ L + ++ G +QKLI+ GK L + LS I + +++
Sbjct: 18 TSQQGSSEPVVQDLAQVVEEVIG--VPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVML 75
Query: 78 MLSK 81
+ K
Sbjct: 76 IGKK 79
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 41.8 bits (98), Expect = 2e-06
Identities = 18/60 (30%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+D++ + ++KE+++ ++G Q+LIYAGK L+DD+ +YNI+ + ++L+
Sbjct: 15 IDIEPTDTIDRIKERVEEKEGIP--PVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLA 72
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 41.4 bits (97), Expect = 3e-06
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 22 HLDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+V+ V LK+++ + + L + GK L D L EY + + + L
Sbjct: 17 TYEVRLTQTVAHLKQQVSGLE--GVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 74
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 41.8 bits (98), Expect = 4e-06
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 12/76 (15%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGK-------ILSDDQALSEYNIDESKFI 75
+ + K K++ GS A +L G + +D L Y +D+ I
Sbjct: 25 YSRSLTIAEFKCKLELVVGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRI 82
Query: 76 VVMLSKPKPTPAPYSG 91
V+ P SG
Sbjct: 83 HVIDHSG---SGPSSG 95
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 41.5 bits (97), Expect = 4e-06
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVMLS 80
+ + LK++I+ ++G + Q+L + G++L D L Y I +S +++
Sbjct: 22 YAINPNSFILGLKQQIEDQQGLP--KKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKK 79
Query: 81 KPKPTPAPYSG 91
K P SG
Sbjct: 80 KGS---GPSSG 87
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 39.1 bits (91), Expect = 2e-05
Identities = 12/59 (20%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
++V + + QLKE + +G A+ ++I+AGK L + + ++++ + ++
Sbjct: 17 VEVDSDTSILQLKEVVAKRQGVP--ADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 73
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 39.1 bits (91), Expect = 3e-05
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGK--------ILSDDQALSEYNIDESKF 74
L V+++K + L Y + +D Q L Y+++
Sbjct: 29 LPDSMTVQKVKGLLSRLLKVP--VSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86
Query: 75 IVVMLSKPKP 84
++V S P
Sbjct: 87 LLVRWSGPSS 96
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 38.3 bits (89), Expect = 5e-05
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+++L E +G E + + +Y G + DQ + +++++ I
Sbjct: 26 LRRLMEAFAKRQGKEM--DSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 74
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 37.5 bits (87), Expect = 1e-04
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 10/63 (15%)
Query: 23 LDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGK-------ILSDDQALSEYNI-DESKF 74
+ LK+K++ G+ + ++ + ++L + + D +
Sbjct: 22 YPAGMSLNDLKKKLELVVGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRI 79
Query: 75 IVV 77
V
Sbjct: 80 HAV 82
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 57
Score = 36.5 bits (84), Expect = 1e-04
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 146 QMRTVVQQNPELLPTVLQQIGQSNPALLELISHNQEAFVRMLNEPV 191
+R VV NPE L +L+ I P L E I N E FV ML E V
Sbjct: 12 SLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAV 57
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 37.3 bits (86), Expect = 2e-04
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 17/86 (19%)
Query: 22 HLDVQEE--VKQLKEKIQSEKG-------------SEYLAEYQKLIYAGKILSDDQ-ALS 65
+ V + V LK+ IQ Y+ L AG+ L++D+ L
Sbjct: 21 PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLR 80
Query: 66 EYNIDESKFIVVMLSKPKPTPAPYSG 91
+Y I + + K P SG
Sbjct: 81 DYGIRNRDEVSFIK-KLGQKSGPSSG 105
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 35.0 bits (80), Expect = 8e-04
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 19 TVSHLDVQEE--------VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
+V E V++ K++I A+ LI+ GKIL D LS+ I
Sbjct: 14 SVKTPQDCHEFFLAENSNVRRFKKQISKYLHCN--ADRLVLIFTGKILRDQDILSQRGIL 71
Query: 71 ESKFIVVML 79
+ + V++
Sbjct: 72 DGSTVHVVV 80
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 34.6 bits (79), Expect = 0.001
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 23 LDVQEE--VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNI 69
+ + + LK+ I ++ G+ + L I D +L +Y I
Sbjct: 43 VKCNTDDTIGDLKKLIAAQTGTRW--NKIVLKKWYTIFKDHVSLGDYEI 89
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 32.6 bits (74), Expect = 0.008
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 22 HLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+ V+Q KE I S+ + LI+AGKIL D L ++ I + + +++
Sbjct: 47 AVPENSSVQQFKEAISKRFKSQ--TDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 31.6 bits (72), Expect = 0.010
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 29 VKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDESKFIVVML 79
+K+LKE +G + ++ G+ ++D+ E ++E I V
Sbjct: 25 LKKLKESYCQRQGVP--MNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 73
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 29.2 bits (65), Expect = 0.12
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 14 NQWQQTVSHLDVQ---EEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNID 70
N+ + VQ E V LKEKI E QKL L D+ +L+ YN+
Sbjct: 36 NENDGQFMEITVQSLSENVGSLKEKIAGEIQIPA--NKQKLSGKAGFLKDNMSLAHYNVG 93
Query: 71 ESKFIVVML 79
+ + + L
Sbjct: 94 AGEILTLSL 102
>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 533
Score = 28.3 bits (63), Expect = 0.67
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 6 HDISDITQNQWQQTVSHL--DVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQA 63
D S IT + + + + + V +L + + K + K + +
Sbjct: 274 QDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLVCISDPNININIYKNKFKDKYKFVEDS 333
Query: 64 LSEYNIDESKF 74
+Y+ID F
Sbjct: 334 EGKYSIDVESF 344
>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 105
Score = 26.7 bits (59), Expect = 0.99
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 26 QEEVKQLKEKIQSEKGSEYLAEYQKLIYAGK 56
Q +KQ+++ I EK + L + + ++ +
Sbjct: 20 QASIKQIQDAIDMEKSQQALVQKRHYLFDVQ 50
>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
coli [TaxId: 562]}
Length = 183
Score = 26.8 bits (59), Expect = 1.4
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 MLAHDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQ 62
++ H Q Q H +VK ++ + + L + ++ + LS +
Sbjct: 109 VMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPE 168
Query: 63 ALSEYN-IDE 71
A+ EY +D
Sbjct: 169 AV-EYGLVDS 177
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase)
{Bacteriophage T7 [TaxId: 10760]}
Length = 129
Score = 24.8 bits (54), Expect = 5.3
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 121 FERVNPYGGESEDPLAFLRTQPQFQQMRTVVQQNPEL 157
F N E++ ++ + +Q+PEL
Sbjct: 40 FLLPNGIFVETKGLW----ESDDRKKHLLIREQHPEL 72
>d1t3ca_ d.92.1.7 (A:) Botulinum neurotoxin {Clostridium botulinum,
serotype E [TaxId: 1491]}
Length = 411
Score = 25.6 bits (56), Expect = 5.3
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 6 HDISDITQNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALS 65
D++ IT Q + ++ + K++ K+ + S L K ++ K D A
Sbjct: 257 TDLNIITSAQSNDIYT--NLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASG 314
Query: 66 EYNIDESKF 74
Y+++ +KF
Sbjct: 315 IYSVNINKF 323
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 394
Score = 25.4 bits (55), Expect = 6.2
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 140 TQPQFQQMRTVVQQNPELLPTVLQQIGQS 168
Q F + V+ L + QIG++
Sbjct: 190 AQGIFVNFKNVLDATSRKLGFGIAQIGKA 218
>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 117
Score = 24.4 bits (53), Expect = 6.3
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 13 QNQWQQTVSHLDVQEEVKQLKEKIQSEKGSEYLAEYQKLIYAGKILSDDQALSEYNIDES 72
+ W TVS + E+ Q + + EK +Y+ E +K + +G Y + S
Sbjct: 40 HSAWTGTVS----ESEISQEADDMAMEK-GKYVGELRKALLSGA-----GPADVYTFNFS 89
Query: 73 K 73
K
Sbjct: 90 K 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.356
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 685,324
Number of extensions: 29630
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 47
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)