BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4260
(129 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|345482492|ref|XP_001608155.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Nasonia vitripennis]
Length = 358
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A T TP T Q T+ AT+ ES LLMG+EY MV NI+DMGYER V +ALRASF
Sbjct: 134 APTRTPETATQQPTPTSVATS-NPPESALLMGEEYNAMVNNIMDMGYERDQVEQALRASF 192
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPVAANEPQG 98
NNPDRAVEYL+TGIPA + E+ P A E Q
Sbjct: 193 NNPDRAVEYLLTGIPAQLF-EDPPEEAAESQD 223
>gi|345482494|ref|XP_003424607.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Nasonia vitripennis]
Length = 367
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A T TP T Q T+ AT+ ES LLMG+EY MV NI+DMGYER V +ALRASF
Sbjct: 134 APTRTPETATQQPTPTSVATS-NPPESALLMGEEYNAMVNNIMDMGYERDQVEQALRASF 192
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPVAANEPQG 98
NNPDRAVEYL+TGIPA + E+ P A E Q
Sbjct: 193 NNPDRAVEYLLTGIPAQLF-EDPPEEAAESQD 223
>gi|345482490|ref|XP_003424606.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Nasonia vitripennis]
Length = 377
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/91 (59%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A T TP T Q T+ AT+ ES LLMG+EY MV NI+DMGYER V +ALRASF
Sbjct: 134 APTRTPETATQQPTPTSVATS-NPPESALLMGEEYNAMVNNIMDMGYERDQVEQALRASF 192
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
NNPDRAVEYL+TGIPA + E+ P A E Q
Sbjct: 193 NNPDRAVEYLLTGIPAQLF-EDPPEEAAESQ 222
>gi|383860341|ref|XP_003705649.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Megachile rotundata]
Length = 365
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/78 (62%), Positives = 55/78 (70%), Gaps = 5/78 (6%)
Query: 13 STPVS-----QAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
S PVS A +TAT G AES LLMG+ Y MV NI+DMGYER V +ALRASFN
Sbjct: 115 SNPVSTAQEQSAASTATECAGGQAESALLMGENYNTMVNNIMDMGYEREQVEQALRASFN 174
Query: 68 NPDRAVEYLITGIPAAVV 85
NPDRAVEYL+TGIPA +
Sbjct: 175 NPDRAVEYLVTGIPAQLF 192
>gi|307211720|gb|EFN87721.1| UV excision repair protein RAD23-like protein A [Harpegnathos
saltator]
Length = 357
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
ST Q A A G AES LLMG++Y MV+NI+DMGYER V +ALRASFNNPDRA
Sbjct: 118 STVQEQIAAAVPAAGCGQAESALLMGEDYNTMVKNIMDMGYEREQVVQALRASFNNPDRA 177
Query: 73 VEYLITGIPAAVVGE--EAPVAANE 95
VEYL+TGIPA + + E P A E
Sbjct: 178 VEYLLTGIPAQLFEDPPEDPPEAQE 202
>gi|340716523|ref|XP_003396747.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Bombus terrestris]
Length = 337
Score = 95.9 bits (237), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 8 ATSTPSTPVSQAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A++ +T Q+ A+ TA G AES LLMG++Y MV NIVDMGYER V +ALRASF
Sbjct: 114 ASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMGYEREQVEQALRASF 173
Query: 67 NNPDRAVEYLITGIPAAVVGEEAP 90
NNPDRAVEYL+TGIPA + E+ P
Sbjct: 174 NNPDRAVEYLLTGIPAQLF-EDLP 196
>gi|340716521|ref|XP_003396746.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Bombus terrestris]
Length = 348
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 8 ATSTPSTPVSQAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A++ +T Q+ A+ TA G AES LLMG++Y MV NIVDMGYER V +ALRASF
Sbjct: 114 ASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMGYEREQVEQALRASF 173
Query: 67 NNPDRAVEYLITGIPAAVVGEEAP 90
NNPDRAVEYL+TGIPA + E+ P
Sbjct: 174 NNPDRAVEYLLTGIPAQLF-EDLP 196
>gi|350404552|ref|XP_003487142.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Bombus
impatiens]
Length = 365
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 10 STPSTPVS-QAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
S P+ V Q+ A+ TA G AES LLMG++Y MV NIVDMGYER V +ALRASFN
Sbjct: 116 SNPTNTVQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMGYEREQVEQALRASFN 175
Query: 68 NPDRAVEYLITGIPAAV 84
NPDRAVEYL+TGIPA +
Sbjct: 176 NPDRAVEYLLTGIPAQL 192
>gi|340716519|ref|XP_003396745.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Bombus terrestris]
Length = 364
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
Query: 8 ATSTPSTPVSQAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A++ +T Q+ A+ TA G AES LLMG++Y MV NIVDMGYER V +ALRASF
Sbjct: 114 ASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMGYEREQVEQALRASF 173
Query: 67 NNPDRAVEYLITGIPAAV 84
NNPDRAVEYL+TGIPA +
Sbjct: 174 NNPDRAVEYLLTGIPAQL 191
>gi|340716525|ref|XP_003396748.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
4 [Bombus terrestris]
Length = 357
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 2/84 (2%)
Query: 8 ATSTPSTPVSQAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
A++ +T Q+ A+ TA G AES LLMG++Y MV NIVDMGYER V +ALRASF
Sbjct: 114 ASNPTNTAQEQSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMGYEREQVEQALRASF 173
Query: 67 NNPDRAVEYLITGIPAAVVGEEAP 90
NNPDRAVEYL+TGIPA + E+ P
Sbjct: 174 NNPDRAVEYLLTGIPAQLF-EDLP 196
>gi|328788815|ref|XP_623093.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Apis mellifera]
Length = 364
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 18 QAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
Q+ A+ TA G AES LLMG++Y MV NIVDMGYER V +ALRASFNNPDRAVEYL
Sbjct: 124 QSEASTTAGCVGGQAESALLMGEDYNTMVNNIVDMGYEREQVEQALRASFNNPDRAVEYL 183
Query: 77 ITGIPAAVVGEEAP 90
+TGIPA + E+ P
Sbjct: 184 LTGIPAQLF-EDLP 196
>gi|307189318|gb|EFN73749.1| UV excision repair protein RAD23-like protein B [Camponotus
floridanus]
Length = 363
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 52/69 (75%), Gaps = 2/69 (2%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE- 87
G AES LLMG++Y MV NI+DMGYER V +ALRASFNNPDRAVEYL+TGIPA + +
Sbjct: 133 GQAESALLMGEDYNTMVNNIMDMGYEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDP 192
Query: 88 -EAPVAANE 95
E P A E
Sbjct: 193 PEDPPEAQE 201
>gi|380027731|ref|XP_003697572.1| PREDICTED: LOW QUALITY PROTEIN: UV excision repair protein RAD23
homolog B-like [Apis florea]
Length = 364
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Query: 18 QAGATATA-TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
Q+ A+ TA G AE LLMG++Y MV NIVDMGYER V +ALRASFNNPDRAVEYL
Sbjct: 124 QSEASTTAGCVGGQAEXALLMGEDYNTMVNNIVDMGYEREQVEQALRASFNNPDRAVEYL 183
Query: 77 ITGIPAAVVGEEAP 90
+TGIPA + E+ P
Sbjct: 184 LTGIPAQLF-EDLP 196
>gi|427787569|gb|JAA59236.1| Putative nucleotide excision repair factor nef2 rad23 component
[Rhipicephalus pulchellus]
Length = 397
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A S +TP S+ A TA A S L+MGDEY RMVQ I++MGYER V ALRASFN
Sbjct: 132 AHSAATTPTSRPAAAETAGL-AMAASALVMGDEYERMVQQIMEMGYERPQVERALRASFN 190
Query: 68 NPDRAVEYLITGIP 81
NPDRAVEYL+TGIP
Sbjct: 191 NPDRAVEYLLTGIP 204
>gi|332025640|gb|EGI65802.1| UV excision repair protein RAD23-like protein B [Acromyrmex
echinatior]
Length = 360
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE--EA 89
ES LLMG++Y MV NI+DMGYER V +ALRASFNNPDRAVEYLITGIPA + + E
Sbjct: 135 ESALLMGEDYNTMVNNIMDMGYEREQVVQALRASFNNPDRAVEYLITGIPAQLFEDPPED 194
Query: 90 PVAANE 95
P A E
Sbjct: 195 PPEAQE 200
>gi|91085045|ref|XP_974357.1| PREDICTED: similar to putative RAD23-like B [Tribolium castaneum]
gi|270009030|gb|EFA05478.1| hypothetical protein TcasGA2_TC015662 [Tribolium castaneum]
Length = 334
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 47/59 (79%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
AES LLMG+EY MVQNIVDMGY R V +ALRAS+NNPDRAVEYLI GIPA +EA
Sbjct: 123 AESALLMGEEYENMVQNIVDMGYPRDQVEQALRASYNNPDRAVEYLINGIPAMGEDQEA 181
>gi|322794461|gb|EFZ17533.1| hypothetical protein SINV_80108 [Solenopsis invicta]
Length = 376
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE--EAP 90
S LLMG++Y MV NI+DMGYER V +ALRASFNNPDRAVEYL+TGIPA + + E P
Sbjct: 151 SALLMGEDYNTMVNNIMDMGYEREQVVQALRASFNNPDRAVEYLLTGIPAQLFEDPPEDP 210
Query: 91 VAANE 95
A E
Sbjct: 211 PEAQE 215
>gi|321479297|gb|EFX90253.1| hypothetical protein DAPPUDRAFT_299929 [Daphnia pulex]
Length = 381
Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 44/51 (86%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
AES L++GD+Y +MVQNI+DMGY R V ALRASFNNPDRAVEYL+TGIP
Sbjct: 127 AESALIVGDDYNQMVQNIMDMGYPRDQVERALRASFNNPDRAVEYLLTGIP 177
>gi|242023622|ref|XP_002432231.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
gi|212517628|gb|EEB19493.1| uv excision repair protein rad23, putative [Pediculus humanus
corporis]
Length = 344
Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 47/61 (77%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
G AES LLMGDEY + ++NI+DMGY + V ALRASFNNPDRAVEYL+ GIP+ V E
Sbjct: 124 GQAESALLMGDEYNQSLRNIMDMGYPKEQVERALRASFNNPDRAVEYLLNGIPSDVDDTE 183
Query: 89 A 89
+
Sbjct: 184 S 184
>gi|304367641|gb|ADM26628.1| nucleotide excision repair factor Rad23 [Polypedilum vanderplanki]
Length = 383
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 1/73 (1%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
GA A+ + AE+ L+MG+ Y MVQNI++MGY+R +V AL ASFNNP+RAVEYLITG
Sbjct: 142 GAAASQSQIAQAEANLVMGENYNTMVQNIMEMGYDRDSVVRALNASFNNPERAVEYLITG 201
Query: 80 IPAAVVGEE-APV 91
IP + + APV
Sbjct: 202 IPEMALQDRPAPV 214
>gi|317107865|dbj|BAJ53744.1| nucleotide excision repair protein [Marsupenaeus japonicus]
Length = 382
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
STP +QA A + G+AES L+MG+E+ RMV+NI++MGYERS V ALRASFNNP A
Sbjct: 148 STPATQA---APGGSVGSAESLLVMGEEFNRMVENIMEMGYERSQVERALRASFNNPYTA 204
Query: 73 VEYLITGIP 81
V+YL+ GIP
Sbjct: 205 VQYLVDGIP 213
>gi|242015323|ref|XP_002428309.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
gi|212512899|gb|EEB15571.1| UV excision repair protein rhp23, putative [Pediculus humanus
corporis]
Length = 156
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
G AES LLMGDEY + ++NI+DMGY + V ALRASFNNPDRAVEYL+ GIP+
Sbjct: 102 GQAESALLMGDEYNQSLRNIMDMGYPKEQVERALRASFNNPDRAVEYLLNGIPS 155
>gi|195064359|ref|XP_001996553.1| GH23932 [Drosophila grimshawi]
gi|193892099|gb|EDV90965.1| GH23932 [Drosophila grimshawi]
Length = 470
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T++ + + G A A+ AES LLMG+EY R V ++++MGY R V A+ ASFNN
Sbjct: 163 TASDYSSIDLVGELANASLQTRAESNLLMGEEYNRTVASMIEMGYARDQVERAMSASFNN 222
Query: 69 PDRAVEYLITGIP 81
P+RAVEYLITGIP
Sbjct: 223 PERAVEYLITGIP 235
>gi|195450799|ref|XP_002072638.1| GK13711 [Drosophila willistoni]
gi|194168723|gb|EDW83624.1| GK13711 [Drosophila willistoni]
Length = 420
Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
GA + +P+T + TA +T AES+LLMG+EY R V ++V+MGY R V A+
Sbjct: 128 GASGTTSDSPNTETT-VSPTAPSTDQTRAESSLLMGEEYNRTVSSMVEMGYPREQVERAM 186
Query: 63 RASFNNPDRAVEYLITGIPA 82
ASFNNP+RAVEYLI GIPA
Sbjct: 187 AASFNNPERAVEYLINGIPA 206
>gi|387017980|gb|AFJ51108.1| UV excision repair protein RAD23 homolog A-like [Crotalus
adamanteus]
Length = 360
Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 48/68 (70%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP + E A
Sbjct: 151 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSSEPERA 210
Query: 90 PVAANEPQ 97
P+ ++PQ
Sbjct: 211 PIQESQPQ 218
>gi|195402315|ref|XP_002059752.1| GJ16257 [Drosophila virilis]
gi|194155966|gb|EDW71150.1| GJ16257 [Drosophila virilis]
gi|263359664|gb|ACY70500.1| hypothetical protein DVIR88_6g0037 [Drosophila virilis]
Length = 448
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 3 GAPAAATSTPST----PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAV 58
G+PA A++T ST + G A + AES LLMG+E+ R V ++V+MGY R V
Sbjct: 153 GSPAPASTTGSTTDYSSIDLVGELANTSLQTRAESNLLMGEEFNRTVASMVEMGYPREQV 212
Query: 59 TEALRASFNNPDRAVEYLITGIP 81
A+ ASFNNP+RAVEYLI GIP
Sbjct: 213 ERAMAASFNNPERAVEYLINGIP 235
>gi|213512547|ref|NP_001135284.1| UV excision repair protein RAD23 homolog A [Salmo salar]
gi|209156014|gb|ACI34239.1| UV excision repair protein RAD23 homolog A [Salmo salar]
Length = 387
Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 9 TSTP-STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
TS P STP S +G A A S L+ G Y MV ++ MGYER V +LRASFN
Sbjct: 131 TSAPASTPTSSSGLLANVNMFEEATSALVTGQSYENMVTEMMLMGYEREQVVASLRASFN 190
Query: 68 NPDRAVEYLITGIPAAVVGEEAPVAAN 94
NPDRAVEYL+TGIPA GEE +A+
Sbjct: 191 NPDRAVEYLLTGIPA---GEEGHASAD 214
>gi|410901673|ref|XP_003964320.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Takifugu rubripes]
Length = 367
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P+AA + P P S + + +A S L+ G EY M+ I+ MGYER V ALRA
Sbjct: 139 PSAAITEPQQPASSSDGSQGL----DASSALVTGAEYEAMLTEIISMGYERERVVAALRA 194
Query: 65 SFNNPDRAVEYLITGIPAAVVGEEAP 90
SFNNP RAVEYL+TGIP++ V E P
Sbjct: 195 SFNNPHRAVEYLLTGIPSSPVQESNP 220
>gi|448512641|ref|XP_003866779.1| Rad23 protein [Candida orthopsilosis Co 90-125]
gi|380351117|emb|CCG21340.1| Rad23 protein [Candida orthopsilosis Co 90-125]
Length = 402
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Query: 5 PAAATSTPSTPVSQA-----GATATATTPGNAE---STLLMGDEYGRMVQNIVDMGYERS 56
PA +T T P S+ GATA+ ++ G AE ST +G E +QNI++MGYER
Sbjct: 105 PAGSTPTAPAPASETATNAEGATASTSSTGPAETSESTFALGSERETTIQNIMEMGYERP 164
Query: 57 AVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
V ALRA+FNNP RAVEYLI+GIP ++ AP
Sbjct: 165 QVEAALRAAFNNPHRAVEYLISGIPESLQRPAAP 198
>gi|348518002|ref|XP_003446521.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Oreochromis niloticus]
Length = 365
Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 66/121 (54%), Gaps = 14/121 (11%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A + P P S +G + +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 133 SAVATEPQQPASSSGGSQGL----DASSTLVTGAEYEAMLTEIMSMGYERERVVAALRAS 188
Query: 66 FNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEIEIPNLMQGDNKVYTL 125
FNNP RAVEYL+TGIP++ V E P A G E P++ +G+N + L
Sbjct: 189 FNNPHRAVEYLLTGIPSSPVQESNPPAQAPTSGTT----------EAPSVPEGENPLAFL 238
Query: 126 K 126
+
Sbjct: 239 R 239
>gi|260945185|ref|XP_002616890.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
gi|238848744|gb|EEQ38208.1| hypothetical protein CLUG_02334 [Clavispora lusitaniae ATCC 42720]
Length = 340
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P +T TP T S A A A+TP ++ S G + +QN+++MGYER + ALRA
Sbjct: 99 PETSTQTPETASSTA---ANASTPASS-SDFASGQDREAAIQNMMEMGYERPQIERALRA 154
Query: 65 SFNNPDRAVEYLITGIPAAVV-GEEAPVAANEP 96
+FNNP RAVEYLITGIP A+ E+ P A EP
Sbjct: 155 AFNNPHRAVEYLITGIPEALTRAEQPPQAQEEP 187
>gi|195469335|ref|XP_002099593.1| GE14546 [Drosophila yakuba]
gi|194185694|gb|EDW99305.1| GE14546 [Drosophila yakuba]
Length = 411
Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 3/73 (4%)
Query: 13 STPVSQ---AGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+TP+S G A A+ AES LLMGDEY + V ++V+MGY R V A+ AS+NNP
Sbjct: 129 TTPISTDNLIGELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNP 188
Query: 70 DRAVEYLITGIPA 82
+RAVEYLI GIPA
Sbjct: 189 ERAVEYLINGIPA 201
>gi|187117168|ref|NP_001119685.1| rad23 protein [Acyrthosiphon pisum]
gi|89473754|gb|ABD72689.1| putative RAD23-like B [Acyrthosiphon pisum]
gi|239788640|dbj|BAH70991.1| ACYPI000077 [Acyrthosiphon pisum]
Length = 347
Score = 78.6 bits (192), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 40/50 (80%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
DE R +QNI+DMGYER V EALRASFNNPDRAVEYL+TGIP ++ +
Sbjct: 145 NDETERTIQNIMDMGYERPQVEEALRASFNNPDRAVEYLLTGIPQELLTD 194
>gi|443714722|gb|ELU07000.1| hypothetical protein CAPTEDRAFT_148202, partial [Capitella teleta]
Length = 320
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 10/91 (10%)
Query: 1 MIGAPAAAT------STPSTPV----SQAGATATATTPGNAESTLLMGDEYGRMVQNIVD 50
M APAAAT S+P+T V + A A A P +AESTL+ G+ Y + VQ ++
Sbjct: 124 MSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTGESYEQTVQEMMS 183
Query: 51 MGYERSAVTEALRASFNNPDRAVEYLITGIP 81
MG+ R V ALRASFNNPDRAVEYL++GIP
Sbjct: 184 MGFARDMVVRALRASFNNPDRAVEYLLSGIP 214
>gi|327264110|ref|XP_003216859.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Anolis
carolinensis]
Length = 364
Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP + E
Sbjct: 155 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPERG 214
Query: 90 PVAANEPQ 97
P+ ++PQ
Sbjct: 215 PIQESQPQ 222
>gi|194771119|ref|XP_001967622.1| GF19257 [Drosophila ananassae]
gi|190614417|gb|EDV29941.1| GF19257 [Drosophila ananassae]
Length = 405
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G + AES LLMGDEY + VQ++++MGY R V A+ ASFNNP+RAVEYLI G
Sbjct: 138 GELENVSLQSRAESNLLMGDEYTQTVQSLIEMGYPREQVERAMSASFNNPERAVEYLING 197
Query: 80 IPA 82
+PA
Sbjct: 198 LPA 200
>gi|354546648|emb|CCE43380.1| hypothetical protein CPAR2_210250 [Candida parapsilosis]
Length = 399
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 8 ATSTPSTPVSQAGATATATTPGNA-----ESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
A STP+ P + AT +A EST +G E +QNI++MGYER V AL
Sbjct: 106 AGSTPTVPAAPTSGAATNIEGESAPTETSESTFALGSERETTIQNIMEMGYERPQVEAAL 165
Query: 63 RASFNNPDRAVEYLITGIPAAVVGEEAPVAA 93
RA+FNNP RAVEYLI+GIP ++ APVA+
Sbjct: 166 RAAFNNPHRAVEYLISGIPESLQRPSAPVAS 196
>gi|4928709|gb|AAD33695.1|AF136606_1 DHR23 [Drosophila melanogaster]
Length = 414
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G A A+ AES LLMGDEY + V ++V+MGY R V A+ AS+NNP+RAVEYLI G
Sbjct: 138 GELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLING 197
Query: 80 IPA 82
IPA
Sbjct: 198 IPA 200
>gi|24638591|ref|NP_651918.2| Rad23, isoform A [Drosophila melanogaster]
gi|442614351|ref|NP_001259052.1| Rad23, isoform C [Drosophila melanogaster]
gi|4928456|gb|AAD33594.1|AF132147_1 DNA repair protein Rad23 [Drosophila melanogaster]
gi|7304320|gb|AAF59352.1| Rad23, isoform A [Drosophila melanogaster]
gi|220942642|gb|ACL83864.1| Rad23-PA [synthetic construct]
gi|440218136|gb|AGB96542.1| Rad23, isoform C [Drosophila melanogaster]
Length = 414
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G A A+ AES LLMGDEY + V ++V+MGY R V A+ AS+NNP+RAVEYLI G
Sbjct: 138 GELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLING 197
Query: 80 IPA 82
IPA
Sbjct: 198 IPA 200
>gi|24638593|ref|NP_726561.1| Rad23, isoform B [Drosophila melanogaster]
gi|22759400|gb|AAN06526.1| Rad23, isoform B [Drosophila melanogaster]
Length = 343
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G A A+ AES LLMGDEY + V ++V+MGY R V A+ AS+NNP+RAVEYLI G
Sbjct: 67 GELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLING 126
Query: 80 IPA 82
IPA
Sbjct: 127 IPA 129
>gi|358333357|dbj|GAA51877.1| UV excision repair protein RAD23 [Clonorchis sinensis]
Length = 504
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 5/81 (6%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T+ P + V A +AT ES L+ G EY R + IV MG+ERS V A+RASFNN
Sbjct: 226 TTVPRSDVPAAAGPESAT----GESALVTGAEYERAISEIVGMGFERSMVIRAMRASFNN 281
Query: 69 PDRAVEYLITG-IPAAVVGEE 88
PDRAVEYL++G IP AVV E+
Sbjct: 282 PDRAVEYLLSGNIPNAVVREQ 302
>gi|195354361|ref|XP_002043666.1| GM26792 [Drosophila sechellia]
gi|194128854|gb|EDW50897.1| GM26792 [Drosophila sechellia]
Length = 414
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G A A+ AES LLMGDEY + V ++V+MGY R V A+ AS+NNP+RAVEYLI G
Sbjct: 138 GELAQASLQSRAESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLING 197
Query: 80 IPA 82
IPA
Sbjct: 198 IPA 200
>gi|41056115|ref|NP_956858.1| UV excision repair protein RAD23 homolog B [Danio rerio]
gi|33989500|gb|AAH56578.1| RAD23 homolog B (S. cerevisiae) [Danio rerio]
Length = 382
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/86 (55%), Positives = 54/86 (62%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
PA AT TPVS +G+ A A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 130 PAPAT----TPVS-SGSLPNANIFEEATSALVTGQSYENMVTEIMLMGYERDRVVAALRA 184
Query: 65 SFNNPDRAVEYLITGIPA----AVVG 86
SFNNPDRAVEYL+TGIPA +VVG
Sbjct: 185 SFNNPDRAVEYLLTGIPAEGEGSVVG 210
>gi|51230604|ref|NP_001003739.1| UV excision repair protein RAD23 homolog A [Danio rerio]
gi|50925991|gb|AAH79526.1| RAD23 homolog A (S. cerevisiae) [Danio rerio]
gi|182889188|gb|AAI64761.1| Rad23a protein [Danio rerio]
Length = 362
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P A S S+P G T +A STL+ G EY M+ NI+ MGYER V AL+A
Sbjct: 128 PPATVSPASSP---DGGTDVVGEGEDASSTLVTGQEYDAMLTNIMSMGYERDKVVAALKA 184
Query: 65 SFNNPDRAVEYLITGIPAAVVGEEAPVAANEP 96
S+NNP RAVEYL+ GIP V E P A P
Sbjct: 185 SYNNPHRAVEYLLNGIPTVPVQETNPAPAQLP 216
>gi|255724082|ref|XP_002546970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134861|gb|EER34415.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 335
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 45/61 (73%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPV 91
EST +G E +QNI++MGYERS V ALRA+FNNP RAVEYL+TGIP ++ E PV
Sbjct: 80 ESTFAVGTEREATIQNIMEMGYERSQVEAALRAAFNNPHRAVEYLLTGIPESLQRPEQPV 139
Query: 92 A 92
A
Sbjct: 140 A 140
>gi|443716613|gb|ELU08047.1| hypothetical protein CAPTEDRAFT_227723 [Capitella teleta]
Length = 335
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 10/91 (10%)
Query: 1 MIGAPAAAT------STPSTPV----SQAGATATATTPGNAESTLLMGDEYGRMVQNIVD 50
M APAAAT S+P+T V + A A A P +AESTL+ G+ Y + VQ ++
Sbjct: 53 MSPAPAAATTESMETSSPATEVVTEATPADAPPAAVQPESAESTLVTGESYEQTVQEMMS 112
Query: 51 MGYERSAVTEALRASFNNPDRAVEYLITGIP 81
MG+ R V ALRASFNNPDRAVEYL++GIP
Sbjct: 113 MGFARDMVVRALRASFNNPDRAVEYLLSGIP 143
>gi|195133968|ref|XP_002011410.1| GI14087 [Drosophila mojavensis]
gi|193912033|gb|EDW10900.1| GI14087 [Drosophila mojavensis]
Length = 442
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+T + + G A A+ AES LLMG+E+ R V ++V+MGY R V A+ ASFNNP
Sbjct: 158 ATDYSSIDLVGELANASLQSRAESNLLMGEEFNRTVASMVEMGYPRDQVERAMAASFNNP 217
Query: 70 DRAVEYLITGIP 81
+RAVEYLI GIP
Sbjct: 218 ERAVEYLINGIP 229
>gi|19113023|ref|NP_596231.1| UV excision repair protein rhp23 [Schizosaccharomyces pombe 972h-]
gi|21542214|sp|O74803.1|RHP23_SCHPO RecName: Full=UV excision repair protein rhp23; AltName: Full=RAD23
homolog
gi|5805388|gb|AAD51975.1|AF174293_1 Rhp23 [Schizosaccharomyces pombe]
gi|3687502|emb|CAA21170.1| Rad23 homolog Rhp23 [Schizosaccharomyces pombe]
Length = 368
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 8/83 (9%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
AAA S P T TAT+ P +A +TL +G + V+N+V+MGYERS V A+RA+
Sbjct: 120 AAAPSNPDT-------TATSEAPIDA-NTLAVGAQRNVAVENMVEMGYERSEVERAMRAA 171
Query: 66 FNNPDRAVEYLITGIPAAVVGEE 88
FNNPDRAVEYL+TGIP ++ +
Sbjct: 172 FNNPDRAVEYLLTGIPEDILNRQ 194
>gi|449266094|gb|EMC77210.1| UV excision repair protein RAD23 like protein B, partial [Columba
livia]
Length = 378
Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P AA S PS+ S G T+ + +A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 126 PPAAIS-PSSTESTTGDTSRSNLFEDAISALVTGQSYENMVTEIISMGYEREQVIAALRA 184
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ GIP
Sbjct: 185 SFNNPDRAVEYLLMGIP 201
>gi|355715051|gb|AES05209.1| RAD23-like protein B [Mustela putorius furo]
Length = 406
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P P + T AT+P +ST L+ G Y MV
Sbjct: 137 APASATQ-PEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 195
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 196 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 229
>gi|195172518|ref|XP_002027044.1| GL18167 [Drosophila persimilis]
gi|194112822|gb|EDW34865.1| GL18167 [Drosophila persimilis]
Length = 430
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 7/85 (8%)
Query: 4 APAAATSTPSTPVSQ-------AGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERS 56
AP+ + S+ T + + G A A+ AES LLMG+EY + V ++V+MGY R
Sbjct: 128 APSVSVSSTGTAIQRPYSSSDLVGELANASLQTRAESNLLMGEEYNKTVLSMVEMGYPRD 187
Query: 57 AVTEALRASFNNPDRAVEYLITGIP 81
V A+ ASFNNP+RAVEYLI GIP
Sbjct: 188 QVERAMGASFNNPERAVEYLINGIP 212
>gi|50412599|ref|XP_457143.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
gi|49652808|emb|CAG85137.1| DEHA2B04180p [Debaryomyces hansenii CBS767]
Length = 373
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 5/83 (6%)
Query: 4 APAAATSTPSTPVSQAGATAT--ATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEA 61
A +T+ STP + +GA+ + PG+A GD+ +QNI++MGYER + EA
Sbjct: 96 ATTESTNASSTPAAASGASTNQQGSEPGSA---FAQGDDREATIQNIMEMGYERPQIEEA 152
Query: 62 LRASFNNPDRAVEYLITGIPAAV 84
LRA+FNNP RAVEYL+TGIP ++
Sbjct: 153 LRAAFNNPHRAVEYLLTGIPESL 175
>gi|74178713|dbj|BAE34014.1| unnamed protein product [Mus musculus]
Length = 416
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|74209288|dbj|BAE25006.1| unnamed protein product [Mus musculus]
Length = 411
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|126002609|ref|XP_001352382.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
gi|54640152|gb|EAL29275.1| GA14903 [Drosophila pseudoobscura pseudoobscura]
Length = 430
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%)
Query: 2 IGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEA 61
+ + A P + G A A+ AES LLMG+EY + V ++V+MGY R V A
Sbjct: 133 VSSTGTAIQRPYSSSDLVGELANASLQTRAESNLLMGEEYNKTVLSMVEMGYPRDQVERA 192
Query: 62 LRASFNNPDRAVEYLITGIP 81
+ ASFNNP+RAVEYLI GIP
Sbjct: 193 MGASFNNPERAVEYLINGIP 212
>gi|432871920|ref|XP_004072043.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 421
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A + P P S +G +A S L+ G EY M+ I+ MGYER V ALRAS
Sbjct: 131 SAEATEPQQPASSSGGNQGL----DASSALVTGAEYEAMLTEIMSMGYERERVVAALRAS 186
Query: 66 FNNPDRAVEYLITGIPAAVVGEEAP 90
FNNP RAVEYL+TGIP++ V E P
Sbjct: 187 FNNPHRAVEYLLTGIPSSPVQESNP 211
>gi|301762141|ref|XP_002916489.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ailuropoda melanoleuca]
Length = 408
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P P + T AT+P +ST L+ G Y MV
Sbjct: 138 APASATQ-PEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|281345182|gb|EFB20766.1| hypothetical protein PANDA_004561 [Ailuropoda melanoleuca]
Length = 386
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 51/94 (54%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P P + T AT+P +ST L+ G Y MV
Sbjct: 116 APASATQ-PEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 175 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 208
>gi|45829444|gb|AAH68193.1| Rad23b protein [Mus musculus]
Length = 415
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|1044899|emb|CAA63146.1| MHR23B [Mus musculus]
gi|20380714|gb|AAH27747.1| RAD23b homolog (S. cerevisiae) [Mus musculus]
gi|148670319|gb|EDL02266.1| RAD23b homolog (S. cerevisiae), isoform CRA_c [Mus musculus]
gi|1587278|prf||2206377B MHR23B gene
Length = 416
Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|74195673|dbj|BAE39643.1| unnamed protein product [Mus musculus]
Length = 327
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|171906578|ref|NP_033037.2| UV excision repair protein RAD23 homolog B [Mus musculus]
gi|341941948|sp|P54728.2|RD23B_MOUSE RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=mHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|74144435|dbj|BAE36067.1| unnamed protein product [Mus musculus]
gi|74144449|dbj|BAE36071.1| unnamed protein product [Mus musculus]
gi|74145328|dbj|BAE36124.1| unnamed protein product [Mus musculus]
gi|74211909|dbj|BAE29298.1| unnamed protein product [Mus musculus]
Length = 416
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|198436382|ref|XP_002131525.1| PREDICTED: similar to RAD23a homolog [Ciona intestinalis]
Length = 335
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
PA A++T S+P + ++A+ AESTL+ G+ Y +V +I+ MG+ER V AL A
Sbjct: 110 PAVASTTSSSPAEEQASSASPLNVSQAESTLVTGEAYNELVTSIMAMGFERERVVAALNA 169
Query: 65 SFNNPDRAVEYLITG 79
SF NPDRAVEYL++G
Sbjct: 170 SFCNPDRAVEYLMSG 184
>gi|148670317|gb|EDL02264.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|148670318|gb|EDL02265.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
Length = 344
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 66 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 124
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 125 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 158
>gi|70778952|ref|NP_001020446.1| UV excision repair protein RAD23 homolog B [Rattus norvegicus]
gi|123789085|sp|Q4KMA2.1|RD23B_RAT RecName: Full=UV excision repair protein RAD23 homolog B
gi|68534740|gb|AAH98674.1| RAD23 homolog B (S. cerevisiae) [Rattus norvegicus]
gi|149037170|gb|EDL91701.1| RAD23b homolog (S. cerevisiae), isoform CRA_b [Rattus norvegicus]
Length = 415
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ +PA A STP G ++ + +A S L+ G Y MV I+ MGYER V
Sbjct: 157 VLTSPAPADSTP-------GDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIA 209
Query: 61 ALRASFNNPDRAVEYLITGIP 81
ALRASFNNPDRAVEYL+ GIP
Sbjct: 210 ALRASFNNPDRAVEYLLMGIP 230
>gi|395823983|ref|XP_003785253.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Otolemur garnettii]
Length = 413
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P A + TP+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 156 PVATSPTPTD--STSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRA 213
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ GIP
Sbjct: 214 SFNNPDRAVEYLLMGIP 230
>gi|194913607|ref|XP_001982736.1| GG16385 [Drosophila erecta]
gi|190647952|gb|EDV45255.1| GG16385 [Drosophila erecta]
Length = 414
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+TP + + G A A+ AES LLMG+EY + V ++V+MGY R V A+ AS+NNP
Sbjct: 128 TTPLSTDNLIGDLAQASLQSRAESNLLMGEEYNQTVLSMVEMGYPREEVERAMAASYNNP 187
Query: 70 DRAVEYLITGIP 81
+RAVEYLI GIP
Sbjct: 188 ERAVEYLINGIP 199
>gi|354499742|ref|XP_003511965.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Cricetulus griseus]
Length = 497
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ +PA A STP G ++ + +A S L+ G Y MV I+ MGYER V
Sbjct: 236 VVTSPAPADSTP-------GDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIA 288
Query: 61 ALRASFNNPDRAVEYLITGIP 81
ALRASFNNPDRAVEYL+ GIP
Sbjct: 289 ALRASFNNPDRAVEYLLMGIP 309
>gi|149037168|gb|EDL91699.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
gi|149037169|gb|EDL91700.1| RAD23b homolog (S. cerevisiae), isoform CRA_a [Rattus norvegicus]
Length = 343
Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ +PA A STP G ++ + +A S L+ G Y MV I+ MGYER V
Sbjct: 85 VLTSPAPADSTP-------GDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIA 137
Query: 61 ALRASFNNPDRAVEYLITGIP 81
ALRASFNNPDRAVEYL+ GIP
Sbjct: 138 ALRASFNNPDRAVEYLLMGIP 158
>gi|302916881|ref|XP_003052251.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
gi|256733190|gb|EEU46538.1| hypothetical protein NECHADRAFT_60284 [Nectria haematococca mpVI
77-13-4]
Length = 389
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+ P+TP Q A + P N S L MG + + N+ MG+ERS + A+RA+FNNP
Sbjct: 115 AVPATPTPQRSVEAGSGAPSNEPSGLAMGAQRAEAIANMEAMGFERSQIEAAMRAAFNNP 174
Query: 70 DRAVEYLITGIP 81
DRAVEYL+TGIP
Sbjct: 175 DRAVEYLLTGIP 186
>gi|60422770|gb|AAH90351.1| Rad23b protein [Rattus norvegicus]
Length = 333
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ +PA A STP G ++ + +A S L+ G Y MV I+ MGYER V
Sbjct: 75 VLTSPAPADSTP-------GDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIA 127
Query: 61 ALRASFNNPDRAVEYLITGIP 81
ALRASFNNPDRAVEYL+ GIP
Sbjct: 128 ALRASFNNPDRAVEYLLMGIP 148
>gi|395513058|ref|XP_003760747.1| PREDICTED: UV excision repair protein RAD23 homolog A [Sarcophilus
harrisii]
Length = 404
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 43/62 (69%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP + E
Sbjct: 194 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPESG 253
Query: 90 PV 91
PV
Sbjct: 254 PV 255
>gi|224091533|ref|XP_002188381.1| PREDICTED: UV excision repair protein RAD23 homolog B [Taeniopygia
guttata]
Length = 400
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 46/71 (64%)
Query: 11 TPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
+PS+ S G T+ + +A S L+ G Y MV I+ MGYER V ALRASFNNPD
Sbjct: 153 SPSSIDSTTGDTSRSNLFEDAISALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPD 212
Query: 71 RAVEYLITGIP 81
RAVEYL+ GIP
Sbjct: 213 RAVEYLLMGIP 223
>gi|428161911|gb|EKX31145.1| Rad23 nucleotide excision repair protein binds to XPC [Guillardia
theta CCMP2712]
Length = 378
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 12 PSTPVSQAGATATATTPG--NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
PSTP A +TA A+T + S LL G+ V I++MG+ER V +ALRA+FNNP
Sbjct: 117 PSTPAQSAPSTAPASTTSYDASASALLTGESLEATVMQIMEMGFEREQVMKALRAAFNNP 176
Query: 70 DRAVEYLITGIP 81
DRAVEYL+TGIP
Sbjct: 177 DRAVEYLMTGIP 188
>gi|441628881|ref|XP_003275714.2| PREDICTED: UV excision repair protein RAD23 homolog A [Nomascus
leucogenys]
Length = 397
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 41/54 (75%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIPA+
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPAS 205
>gi|47205078|emb|CAF91196.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
+A S L+ G EY M+ I+ MGYER V ALRASFNNP RAVEYL+TGIP++ V E
Sbjct: 106 DASSALVTGAEYEAMLTEIISMGYERERVVAALRASFNNPHRAVEYLLTGIPSSPVQE 163
>gi|351710326|gb|EHB13245.1| UV excision repair protein RAD23-like protein B [Heterocephalus
glaber]
Length = 406
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
S+P++ + +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 156 SSPASTDNTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 215
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 216 DRAVEYLLMGIP 227
>gi|351711552|gb|EHB14471.1| UV excision repair protein RAD23-like protein A [Heterocephalus
glaber]
Length = 363
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SATTTSPESVLGSVPSSGSSGREEDAASTLVTGSEYETMLMEIMSMGYERERVIAALRAS 187
Query: 66 FNNPDRAVEYLITGIP 81
+NNP RAVEYL+TGIP
Sbjct: 188 YNNPHRAVEYLLTGIP 203
>gi|387849175|ref|NP_001248717.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815240|gb|AFE79494.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815242|gb|AFE79495.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815244|gb|AFE79496.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|380815246|gb|AFE79497.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|383410191|gb|AFH28309.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
gi|384942154|gb|AFI34682.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 138 APASATKQ-EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|402896747|ref|XP_003911450.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Papio
anubis]
Length = 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 138 APASATKQ-EKPTEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|348570354|ref|XP_003470962.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Cavia
porcellus]
Length = 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
S+P++ + +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 SSPTSTDNTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|90079451|dbj|BAE89405.1| unnamed protein product [Macaca fascicularis]
Length = 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 138 APASATKQ-EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|383420441|gb|AFH33434.1| UV excision repair protein RAD23 homolog B [Macaca mulatta]
Length = 372
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 138 APASATKQ-EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|332222429|ref|XP_003260372.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Nomascus leucogenys]
Length = 409
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 138 APASATKQ-EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|391330987|ref|XP_003739932.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Metaseiulus occidentalis]
Length = 336
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 11 TPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
TP+ +T ++ GN ESTL++G++Y +MV++I +MGY + V ALRAS+NNPD
Sbjct: 116 TPTATRPSTTTPSTDSSAGN-ESTLVVGEQYKQMVESITEMGYPQDQVERALRASYNNPD 174
Query: 71 RAVEYLITGIP 81
RAVEYL+TG P
Sbjct: 175 RAVEYLVTGFP 185
>gi|254569268|ref|XP_002491744.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|238031541|emb|CAY69464.1| Protein with ubiquitin-like N terminus, recognizes and binds
damaged DNA (with Rad4p) [Komagataella pastoris GS115]
gi|328351754|emb|CCA38153.1| Probable DNA repair protein RAD23 [Komagataella pastoris CBS 7435]
Length = 338
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 13/91 (14%)
Query: 2 IGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEA 61
I AP A P PV+ +G+ NA ST +G++ ++NI++MGY+RS V A
Sbjct: 100 IAAPGIAV--PPVPVNTSGSF-------NA-STFAVGNDRENAIRNIMEMGYDRSQVEAA 149
Query: 62 LRASFNNPDRAVEYLITGIPAAVVGEEAPVA 92
LRA+FNNPDRAVEYL+TG+P V E P+A
Sbjct: 150 LRAAFNNPDRAVEYLLTGLP---VNNEEPIA 177
>gi|355753132|gb|EHH57178.1| UV excision repair protein RAD23-like protein B, partial [Macaca
fascicularis]
Length = 387
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 116 APASATKQ-EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 175 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 208
>gi|355567554|gb|EHH23895.1| UV excision repair protein RAD23-like protein B, partial [Macaca
mulatta]
Length = 387
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 53/94 (56%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPS-------TPVSQAGATATATTPGN---------AESTLLMGDEYGRMVQN 47
APA+AT TPV+ TAT +T G+ A S L+ G Y MV
Sbjct: 116 APASATKQKKAAEKPAETPVA-TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 174
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 175 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 208
>gi|387017982|gb|AFJ51109.1| UV excision repair protein RAD23 homolog B-like [Crotalus
adamanteus]
Length = 409
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P++ S G + + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 158 TSPTSTESSIGDISRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 217
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 218 DRAVEYLLMGIP 229
>gi|126335852|ref|XP_001374067.1| PREDICTED: UV excision repair protein RAD23 homolog B [Monodelphis
domestica]
Length = 411
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 11 TPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
+P++ S G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNPD
Sbjct: 162 SPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPD 221
Query: 71 RAVEYLITGIP 81
RAVEYL+ GIP
Sbjct: 222 RAVEYLLMGIP 232
>gi|332222431|ref|XP_003260373.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Nomascus leucogenys]
Length = 388
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA+AT P + T AT+P +ST L+ G Y MV
Sbjct: 117 APASATKQ-EKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTE 175
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 176 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 209
>gi|194332576|ref|NP_001123777.1| uncharacterized protein LOC100170527 [Xenopus (Silurana)
tropicalis]
gi|156914684|gb|AAI52591.1| Zgc:123349 [Danio rerio]
gi|189441745|gb|AAI67540.1| LOC100170527 protein [Xenopus (Silurana) tropicalis]
Length = 404
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 43/66 (65%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
S+A T + A S L+ G Y +V I+ MGYER V ALRASFNNPDRAVEYL
Sbjct: 175 SEASLTDELSLLEAAASILVTGQAYENLVTEIMSMGYEREQVIAALRASFNNPDRAVEYL 234
Query: 77 ITGIPA 82
+TGIPA
Sbjct: 235 LTGIPA 240
>gi|68466693|ref|XP_722542.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
gi|68466980|ref|XP_722405.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444377|gb|EAL03652.1| hypothetical protein CaO19.9071 [Candida albicans SC5314]
gi|46444523|gb|EAL03797.1| hypothetical protein CaO19.1494 [Candida albicans SC5314]
Length = 348
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPV 91
EST +G E +QNI++MGYER V ALRA+FNNP RAVEYL+TGIP ++ + PV
Sbjct: 79 ESTFAVGSEREASIQNIMEMGYERPQVEAALRAAFNNPHRAVEYLLTGIPESL---QHPV 135
Query: 92 AANEP 96
A +P
Sbjct: 136 APAQP 140
>gi|238881986|gb|EEQ45624.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 348
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPV 91
EST +G E +QNI++MGYER V ALRA+FNNP RAVEYL+TGIP ++ + PV
Sbjct: 79 ESTFAVGSEREASIQNIMEMGYERPQVEAALRAAFNNPHRAVEYLLTGIPESL---QHPV 135
Query: 92 AANEP 96
A +P
Sbjct: 136 APAQP 140
>gi|83415124|ref|NP_001032776.1| uncharacterized protein LOC562839 [Danio rerio]
gi|79154071|gb|AAI08001.1| Zgc:123349 [Danio rerio]
Length = 404
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 38/52 (73%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
A S L+ G Y +V I+ MGYER V ALRASFNNPDRAVEYL+TGIPA
Sbjct: 189 AASILVTGQAYENLVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLTGIPA 240
>gi|432095937|gb|ELK26853.1| UV excision repair protein RAD23 like protein A [Myotis davidii]
Length = 363
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 8/83 (9%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP + E
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHG 211
Query: 90 PV--------AANEPQGNNIKQF 104
V + EP G N +F
Sbjct: 212 SVQESQVSEQTSTEPAGENPLEF 234
>gi|71896193|ref|NP_001025578.1| RAD23 homolog B [Xenopus (Silurana) tropicalis]
gi|60551813|gb|AAH91020.1| rad23b protein [Xenopus (Silurana) tropicalis]
Length = 416
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 49/84 (58%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
+P S ST S ++ + +A S L+ G Y MV I+ MGYER V ALR
Sbjct: 156 SPQETVSPSSTECSLPTDSSRPSLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALR 215
Query: 64 ASFNNPDRAVEYLITGIPAAVVGE 87
ASFNNPDRAVEYL+ GIP+ G+
Sbjct: 216 ASFNNPDRAVEYLLMGIPSDREGQ 239
>gi|297685061|ref|XP_002820118.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pongo abelii]
Length = 388
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 138 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 197
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 198 DRAVEYLLMGIP 209
>gi|410259964|gb|JAA17948.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|18089249|gb|AAH20973.1| RAD23B protein [Homo sapiens]
gi|61361084|gb|AAX41987.1| RAD23-like B [synthetic construct]
gi|123994101|gb|ABM84652.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|124126815|gb|ABM92180.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
Length = 409
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|397479272|ref|XP_003810949.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
3 [Pan paniscus]
Length = 403
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 153 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 212
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 213 DRAVEYLLMGIP 224
>gi|54696272|gb|AAV38508.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|54696274|gb|AAV38509.1| RAD23 homolog B (S. cerevisiae) [synthetic construct]
gi|60654195|gb|AAX29790.1| RAD23-like B [synthetic construct]
gi|60831141|gb|AAX36959.1| RAD23-like B [synthetic construct]
gi|61365892|gb|AAX42780.1| RAD23-like B [synthetic construct]
gi|61365900|gb|AAX42781.1| RAD23-like B [synthetic construct]
Length = 410
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|37595434|gb|AAQ94603.1| RAD23 homolog B [Danio rerio]
Length = 380
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 54/86 (62%), Gaps = 11/86 (12%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
PA AT TPVS +G+ A E+T +G Y MV I+ MGYER V ALRA
Sbjct: 130 PAPAT----TPVS-SGSLPNANI--FEEATSALGQSYENMVTEIMLMGYERDRVVAALRA 182
Query: 65 SFNNPDRAVEYLITGIPA----AVVG 86
SFNNPDRAVEYL+TGIPA +VVG
Sbjct: 183 SFNNPDRAVEYLLTGIPAEGEGSVVG 208
>gi|4506387|ref|NP_002865.1| UV excision repair protein RAD23 homolog B isoform 1 [Homo sapiens]
gi|397479268|ref|XP_003810947.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Pan paniscus]
gi|426362613|ref|XP_004048452.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Gorilla gorilla gorilla]
gi|1709985|sp|P54727.1|RD23B_HUMAN RecName: Full=UV excision repair protein RAD23 homolog B;
Short=HR23B; Short=hHR23B; AltName: Full=XP-C
repair-complementing complex 58 kDa protein; Short=p58
gi|498148|dbj|BAA04652.1| XP-C repair complementing protein (p58/HHR23B) [Homo sapiens]
gi|24414631|gb|AAN47194.1| RAD23 homolog B (S. cerevisiae) [Homo sapiens]
gi|60819839|gb|AAX36514.1| RAD23-like B [synthetic construct]
gi|61363174|gb|AAX42348.1| RAD23-like B [synthetic construct]
gi|119579421|gb|EAW59017.1| RAD23 homolog B (S. cerevisiae), isoform CRA_b [Homo sapiens]
gi|193785017|dbj|BAG54170.1| unnamed protein product [Homo sapiens]
gi|261858390|dbj|BAI45717.1| RAD23 homolog B [synthetic construct]
Length = 409
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|61370793|gb|AAX43553.1| RAD23-like B [synthetic construct]
Length = 410
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|410225240|gb|JAA09839.1| RAD23 homolog B [Pan troglodytes]
Length = 409
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>gi|194374237|dbj|BAG57014.1| unnamed protein product [Homo sapiens]
Length = 403
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 14 TPVSQAGATATATTPGN---------AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
TPV+ TAT +T G+ A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 155 TPVA-TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRA 213
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ GIP
Sbjct: 214 SFNNPDRAVEYLLMGIP 230
>gi|347658978|ref|NP_001231638.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
gi|343961243|dbj|BAK62211.1| UV excision repair protein RAD23 homolog B [Pan troglodytes]
Length = 388
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 138 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 197
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 198 DRAVEYLLMGIP 209
>gi|57094213|ref|XP_538778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Canis lupus familiaris]
Length = 406
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 157 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 216
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 217 DRAVEYLLMGIP 228
>gi|327278100|ref|XP_003223800.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Anolis
carolinensis]
Length = 425
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 50/100 (50%), Gaps = 23/100 (23%)
Query: 5 PAAATSTP---STPVSQAGATATATTPG--------------------NAESTLLMGDEY 41
PAA T P S+PV + A TP +A S L+ G Y
Sbjct: 133 PAAVTCEPAPVSSPVEEKVAEKPIETPAATSTSTDSTTGDLSRSNLFEDATSALVTGQSY 192
Query: 42 GRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 193 ENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 232
>gi|221045766|dbj|BAH14560.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 138 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 197
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 198 DRAVEYLLMGIP 209
>gi|347800662|ref|NP_001231642.1| UV excision repair protein RAD23 homolog B isoform 2 [Homo sapiens]
gi|397479270|ref|XP_003810948.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pan paniscus]
gi|426362615|ref|XP_004048453.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Gorilla gorilla gorilla]
gi|221042046|dbj|BAH12700.1| unnamed protein product [Homo sapiens]
Length = 388
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 138 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 197
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 198 DRAVEYLLMGIP 209
>gi|126723729|ref|NP_001075850.1| protein RAD23 repair 23 (2L942) [Oryctolagus cuniculus]
gi|1857435|gb|AAB48442.1| oncogene [Oryctolagus cuniculus]
Length = 748
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|345777678|ref|XP_003431632.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Canis lupus familiaris]
Length = 385
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 136 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 195
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 196 DRAVEYLLMGIP 207
>gi|388580050|gb|EIM20368.1| UV excision repair protein Rad23 [Wallemia sebi CBS 633.66]
Length = 336
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 45/59 (76%)
Query: 23 ATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
A+++TP + L MG E V N+V+MG++R+ V +A+RASFNNP+RAVEYL+TGIP
Sbjct: 112 ASSSTPSQPGNNLAMGSELETAVSNMVEMGFDRAQVMKAMRASFNNPERAVEYLMTGIP 170
>gi|347800665|ref|NP_001231653.1| UV excision repair protein RAD23 homolog B isoform 3 [Homo sapiens]
gi|119579420|gb|EAW59016.1| RAD23 homolog B (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 337
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 14 TPVSQAGATATATTPGN---------AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
TPV+ TAT +T G+ A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 83 TPVA-TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRA 141
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ GIP
Sbjct: 142 SFNNPDRAVEYLLMGIP 158
>gi|32402044|gb|AAP81008.1| RAD23-like protein B [Homo sapiens]
Length = 337
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 14 TPVSQAGATATATTPGN---------AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
TPV+ TAT +T G+ A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 83 TPVA-TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRA 141
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ GIP
Sbjct: 142 SFNNPDRAVEYLLMGIP 158
>gi|241713573|ref|XP_002412111.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
gi|215505188|gb|EEC14682.1| nucleotide excision repair factor NEF2, RAD23 component, putative
[Ixodes scapularis]
Length = 392
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 39/47 (82%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
AES L+MG++Y RMV I++MGY++ V ALRASFNNPDRAVEYL+
Sbjct: 165 AESALVMGEDYQRMVSQIMEMGYDKPQVERALRASFNNPDRAVEYLL 211
>gi|403302244|ref|XP_003941772.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Saimiri boliviensis boliviensis]
Length = 363
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYEREQVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|148226348|ref|NP_001082494.1| RAD23 homolog B [Xenopus laevis]
gi|28277263|gb|AAH44089.1| MGC53561 protein [Xenopus laevis]
gi|28278600|gb|AAH44115.1| MGC53561 protein [Xenopus laevis]
Length = 412
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP+ G+
Sbjct: 182 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPSDSEGQ 239
>gi|149037839|gb|EDL92199.1| RAD23a homolog (S. cerevisiae) [Rattus norvegicus]
Length = 363
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SATTTSPESISGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|395740795|ref|XP_003777470.1| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
2 [Pongo abelii]
Length = 337
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 14 TPVSQAGATATATTPGN---------AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
TPV+ TAT +T G+ A S L+ G Y MV I+ MGYER V ALRA
Sbjct: 83 TPVA-TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRA 141
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ GIP
Sbjct: 142 SFNNPDRAVEYLLMGIP 158
>gi|146418936|ref|XP_001485433.1| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
+GDE +QNI++MGYER+ V ALRASFNNP RAVEYL+TGIP ++
Sbjct: 134 LGDEREASIQNIMEMGYERTQVEAALRASFNNPHRAVEYLLTGIPESL 181
>gi|129277537|ref|NP_001076083.1| UV excision repair protein RAD23 homolog A [Bos taurus]
gi|182676545|sp|A3KMV2.1|RD23A_BOVIN RecName: Full=UV excision repair protein RAD23 homolog A
gi|126717366|gb|AAI33283.1| RAD23A protein [Bos taurus]
gi|296485920|tpg|DAA28035.1| TPA: UV excision repair protein RAD23 homolog A [Bos taurus]
Length = 362
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ + +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|296233062|ref|XP_002807846.1| PREDICTED: UV excision repair protein RAD23 homolog A [Callithrix
jacchus]
Length = 363
Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|402904431|ref|XP_003915049.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Papio anubis]
gi|355703206|gb|EHH29697.1| UV excision repair protein RAD23-like protein A [Macaca mulatta]
gi|383420439|gb|AFH33433.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 363
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|380815238|gb|AFE79493.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
gi|384948564|gb|AFI37887.1| UV excision repair protein RAD23 homolog A [Macaca mulatta]
Length = 362
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|392884316|gb|AFM90990.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
A S L+ G +Y MV I MGY R V AL+ASFNNPDRAVEYL+ GIP GE A
Sbjct: 167 ATSALVTGQQYETMVTEITSMGYSREQVVAALKASFNNPDRAVEYLLMGIP----GERAR 222
Query: 91 VAANEPQ 97
+ N PQ
Sbjct: 223 SSVNNPQ 229
>gi|297276258|ref|XP_001110103.2| PREDICTED: UV excision repair protein RAD23 homolog A [Macaca
mulatta]
Length = 276
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|291382841|ref|XP_002708173.1| PREDICTED: UV excision repair protein RAD23 homolog B [Oryctolagus
cuniculus]
Length = 409
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 178 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 229
>gi|430811680|emb|CCJ30877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1394
Score = 72.0 bits (175), Expect = 7e-11, Method: Composition-based stats.
Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
A A TS PS P + ++++ N ++L++G ++N+++MGYER+ V A+R
Sbjct: 1137 ASAPETSLPSVP---GTSVSSSSETFNDPNSLVVGLLCDTAIKNMMEMGYERTQVENAMR 1193
Query: 64 ASFNNPDRAVEYLITGIP 81
A+FNNPDRAVEYL+TGIP
Sbjct: 1194 AAFNNPDRAVEYLLTGIP 1211
>gi|392883134|gb|AFM90399.1| UV excision repair protein RAD23-like B protein [Callorhinchus
milii]
Length = 378
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
A S L+ G +Y MV I MGY R V AL+ASFNNPDRAVEYL+ GIP GE A
Sbjct: 167 ATSALVTGQQYETMVTEITSMGYSREQVVAALKASFNNPDRAVEYLLMGIP----GERAR 222
Query: 91 VAANEPQ 97
+ N PQ
Sbjct: 223 SSVNNPQ 229
>gi|387914414|gb|AFK10816.1| UV excision repair protein RAD23-like protein [Callorhinchus milii]
Length = 378
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
A S L+ G +Y MV I MGY R V AL+ASFNNPDRAVEYL+ GIP GE A
Sbjct: 167 ATSALVTGQQYETMVTEITSMGYSREQVVAALKASFNNPDRAVEYLLMGIP----GERAR 222
Query: 91 VAANEPQ 97
+ N PQ
Sbjct: 223 SSVNNPQ 229
>gi|116283302|gb|AAH03846.1| Rad23a protein [Mus musculus]
Length = 349
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|66363310|ref|XP_628621.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
gi|46229830|gb|EAK90648.1| RAD23p, UB+UBA domains protein [Cryptosporidium parvum Iowa II]
Length = 362
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 6/88 (6%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
AA++T S +Q+G + + + S LL G E + + NIV+MG+ER VT A+RA+F
Sbjct: 123 AASATTSNIQAQSGNSDPSI--DSRASALLTGTELEKTITNIVNMGFEREQVTRAMRAAF 180
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPVAAN 94
NNPDRAVEYL +G+P E PVA N
Sbjct: 181 NNPDRAVEYLTSGLPIP----ENPVAPN 204
>gi|403302246|ref|XP_003941773.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Saimiri boliviensis boliviensis]
Length = 308
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYEREQVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|260821380|ref|XP_002606011.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
gi|229291348|gb|EEN62021.1| hypothetical protein BRAFLDRAFT_61506 [Branchiostoma floridae]
Length = 315
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 5/69 (7%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPV--AANE 95
G Y MV +++ MG+ER V ALRASFNNPDRAVEYL+TG+P A+ E P+ ++
Sbjct: 135 GTAYETMVTSMMSMGFERDQVVAALRASFNNPDRAVEYLLTGLPPAM---ENPLEFLRDQ 191
Query: 96 PQGNNIKQF 104
PQ NN++Q
Sbjct: 192 PQFNNMRQL 200
>gi|26337167|dbj|BAC32268.1| unnamed protein product [Mus musculus]
Length = 296
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|355768543|gb|EHH62732.1| UV excision repair protein RAD23-like protein A, partial [Macaca
fascicularis]
Length = 339
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 104 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 163
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 164 YNNPHRAVEYLLTGIPGS 181
>gi|4826964|ref|NP_005044.1| UV excision repair protein RAD23 homolog A isoform 1 [Homo sapiens]
gi|426387413|ref|XP_004060163.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Gorilla gorilla gorilla]
gi|1709983|sp|P54725.1|RD23A_HUMAN RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=hHR23A
gi|498146|dbj|BAA04767.1| HHR23A protein [Homo sapiens]
gi|1905912|gb|AAB51177.1| human RAD23A homolog [Homo sapiens]
gi|15559329|gb|AAH14026.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|23664450|gb|AAN39383.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
gi|60813919|gb|AAX36280.1| RAD23-like A [synthetic construct]
gi|61355208|gb|AAX41114.1| RAD23-like A [synthetic construct]
gi|119604739|gb|EAW84333.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|119604740|gb|EAW84334.1| RAD23 homolog A (S. cerevisiae), isoform CRA_a [Homo sapiens]
gi|325464287|gb|ADZ15914.1| RAD23 homolog A (S. cerevisiae) [synthetic construct]
gi|410227880|gb|JAA11159.1| RAD23 homolog A [Pan troglodytes]
gi|410257472|gb|JAA16703.1| RAD23 homolog A [Pan troglodytes]
gi|410297508|gb|JAA27354.1| RAD23 homolog A [Pan troglodytes]
gi|410351505|gb|JAA42356.1| RAD23 homolog A [Pan troglodytes]
Length = 363
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|61557236|ref|NP_001013208.1| UV excision repair protein RAD23 homolog A [Rattus norvegicus]
gi|54038637|gb|AAH84695.1| RAD23 homolog A (S. cerevisiae) [Rattus norvegicus]
Length = 351
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|392884282|gb|AFM90973.1| UV excision repair protein RAD23-like protein B isoform 5
[Callorhinchus milii]
Length = 378
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
A S L+ G +Y MV I MGY R V AL+ASFNNPDRAVEYL+ GIP GE A
Sbjct: 167 ATSALVTGQQYETMVTEITSMGYSREQVVAALKASFNNPDRAVEYLLMGIP----GERAR 222
Query: 91 VAANEPQ 97
+ N PQ
Sbjct: 223 SSVNNPQ 229
>gi|392996949|ref|NP_001257291.1| UV excision repair protein RAD23 homolog A isoform 2 [Homo sapiens]
gi|208965418|dbj|BAG72723.1| RAD23 homolog A [synthetic construct]
Length = 362
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|402904433|ref|XP_003915050.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Papio anubis]
Length = 308
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|431918433|gb|ELK17657.1| UV excision repair protein RAD23 like protein B [Pteropus alecto]
Length = 439
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 210 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 261
>gi|410950562|ref|XP_003981973.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Felis catus]
Length = 308
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|397487604|ref|XP_003814882.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Pan paniscus]
Length = 363
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|148225642|ref|NP_001089431.1| uncharacterized protein LOC734481 [Xenopus laevis]
gi|63101219|gb|AAH94481.1| MGC115064 protein [Xenopus laevis]
Length = 419
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 38/53 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP+
Sbjct: 182 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPS 234
>gi|335282758|ref|XP_003123386.2| PREDICTED: UV excision repair protein RAD23 homolog A-like [Sus
scrofa]
Length = 363
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 41/141 (29%)
Query: 4 APAAATSTPSTPVSQAGATATATTPG--------------------NAESTLLMGDEYGR 43
APA+ S P +P + + + + P +A STL+ G EY
Sbjct: 106 APASGMSHPPSPAREDKSPSEESVPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYET 165
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA-----------AVVGEEAPVA 92
M+ I MGYER V ALRAS+NNP RAVEYL+TGIP + V E+ P
Sbjct: 166 MLTEITSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPPTE 225
Query: 93 A----------NEPQGNNIKQ 103
A ++PQ N++Q
Sbjct: 226 AAGENPLEFLRDQPQFQNMRQ 246
>gi|62089006|dbj|BAD92950.1| UV excision repair protein RAD23 homolog A variant [Homo sapiens]
Length = 379
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 145 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 204
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 205 YNNPHRAVEYLLTGIPGS 222
>gi|349803947|gb|AEQ17446.1| putative rad23b [Hymenochirus curtipes]
Length = 286
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGN---------AESTLLMGDEYGRMVQNIVDMGYE 54
AP T S P + + ++ + P + A S L+ G Y MV I+ MGYE
Sbjct: 100 APKEEEKTDSPPETMSPSSTECSVPSDSSRPSLFVDATSALVTGQSYENMVTEIMSMGYE 159
Query: 55 RSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
R V ALRASFNNPDRAVEYL+ GIP G+ A+ PQ
Sbjct: 160 REQVIAALRASFNNPDRAVEYLLVGIPGDREGQ---AVADPPQ 199
>gi|38492677|pdb|1OQY|A Chain A, Structure Of The Dna Repair Protein Hhr23a
gi|38492966|pdb|1QZE|A Chain A, Hhr23a Protein Structure Based On Residual Dipolar
Coupling Data
Length = 368
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 133 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 192
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 193 YNNPHRAVEYLLTGIPGS 210
>gi|291223551|ref|XP_002731773.1| PREDICTED: protein RAD23 repair 23 (2L942)-like [Saccoglossus
kowalevskii]
Length = 601
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
ESTLL G Y +V +++MGYER V ALRA+FNNPDRAV+YL++GIP +V+
Sbjct: 150 ESTLLTGAAYENVVAELMNMGYERDPVVRALRAAFNNPDRAVDYLLSGIPESVL 203
>gi|297703760|ref|XP_002828804.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pongo
abelii]
Length = 485
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 275 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 328
>gi|392996951|ref|NP_001257292.1| UV excision repair protein RAD23 homolog A isoform 3 [Homo sapiens]
gi|426387415|ref|XP_004060164.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Gorilla gorilla gorilla]
Length = 308
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|344244513|gb|EGW00617.1| UV excision repair protein RAD23-like A [Cricetulus griseus]
Length = 316
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 78 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 131
>gi|397487606|ref|XP_003814883.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Pan paniscus]
Length = 308
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|395850797|ref|XP_003797962.1| PREDICTED: UV excision repair protein RAD23 homolog A [Otolemur
garnettii]
Length = 362
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYEREQVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|148679012|gb|EDL10959.1| RAD23a homolog (S. cerevisiae), isoform CRA_a [Mus musculus]
Length = 379
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 169 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 222
>gi|354479499|ref|XP_003501947.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Cricetulus griseus]
Length = 375
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 164 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 217
>gi|332853400|ref|XP_003316200.1| PREDICTED: UV excision repair protein RAD23 homolog A [Pan
troglodytes]
Length = 463
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 253 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 306
>gi|74224982|dbj|BAE38204.1| unnamed protein product [Mus musculus]
Length = 322
Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|417410223|gb|JAA51588.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 380
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 169 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 222
>gi|431898018|gb|ELK06725.1| UV excision repair protein RAD23 like protein A [Pteropus alecto]
Length = 363
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|34447211|ref|NP_033036.2| UV excision repair protein RAD23 homolog A [Mus musculus]
gi|26332489|dbj|BAC29962.1| unnamed protein product [Mus musculus]
gi|187952977|gb|AAI38685.1| Rad23a protein [Mus musculus]
Length = 362
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|395516067|ref|XP_003762216.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sarcophilus
harrisii]
Length = 482
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 46/71 (64%)
Query: 11 TPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
+P++ S G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNPD
Sbjct: 233 SPTSSDSTLGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPD 292
Query: 71 RAVEYLITGIP 81
RAVEYL+ GIP
Sbjct: 293 RAVEYLLMGIP 303
>gi|341941880|sp|P54726.2|RD23A_MOUSE RecName: Full=UV excision repair protein RAD23 homolog A;
Short=HR23A; Short=mHR23A
gi|148679013|gb|EDL10960.1| RAD23a homolog (S. cerevisiae), isoform CRA_b [Mus musculus]
gi|219519380|gb|AAI45373.1| Rad23a protein [Mus musculus]
Length = 363
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|410950560|ref|XP_003981972.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Felis catus]
Length = 362
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|126323174|ref|XP_001366912.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Monodelphis domestica]
Length = 366
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 42/62 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+ GIP + E
Sbjct: 156 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLMGIPGSPEPESG 215
Query: 90 PV 91
PV
Sbjct: 216 PV 217
>gi|194225605|ref|XP_001916027.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Equus caballus]
Length = 336
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 107 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 158
>gi|440908044|gb|ELR58113.1| UV excision repair protein RAD23-like protein B, partial [Bos
grunniens mutus]
Length = 386
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 157 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 208
>gi|344282700|ref|XP_003413111.1| PREDICTED: UV excision repair protein RAD23 homolog A [Loxodonta
africana]
Length = 363
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|363744612|ref|XP_429175.3| PREDICTED: UV excision repair protein RAD23 homolog B [Gallus
gallus]
Length = 403
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 42/65 (64%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
S G T+ + +A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL
Sbjct: 162 STTGDTSRSNLFEDAISALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYL 221
Query: 77 ITGIP 81
+ GIP
Sbjct: 222 LMGIP 226
>gi|323509241|dbj|BAJ77513.1| cgd7_4730 [Cryptosporidium parvum]
Length = 341
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 6/88 (6%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
AA++T S +Q+G + + + S LL G E + + NIV+MG+ER VT A+RA+F
Sbjct: 102 AASATTSNIQAQSGNSDPSI--DSRASALLTGTELEKTITNIVNMGFEREQVTRAMRAAF 159
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPVAAN 94
NNPDRAVEYL +G+P E PVA N
Sbjct: 160 NNPDRAVEYLTSGLPIP----ENPVAPN 183
>gi|410978805|ref|XP_003995778.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Felis catus]
Length = 408
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|158260839|dbj|BAF82597.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|426219746|ref|XP_004004079.1| PREDICTED: UV excision repair protein RAD23 homolog B [Ovis aries]
Length = 336
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 107 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 158
>gi|417410194|gb|JAA51574.1| Putative nucleotide excision repair factor nef2 rad23 component,
partial [Desmodus rotundus]
Length = 377
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 148 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 199
>gi|73986456|ref|XP_542038.2| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Canis lupus familiaris]
Length = 362
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|1044897|emb|CAA63145.1| MHR23A [Mus musculus]
gi|1587277|prf||2206377A MHR23A gene
Length = 363
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|410978807|ref|XP_003995779.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Felis catus]
Length = 387
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 158 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 209
>gi|114052667|ref|NP_001039775.1| UV excision repair protein RAD23 homolog B [Bos taurus]
gi|109892954|sp|Q29RK4.1|RD23B_BOVIN RecName: Full=UV excision repair protein RAD23 homolog B
gi|88954168|gb|AAI14134.1| RAD23 homolog B (S. cerevisiae) [Bos taurus]
gi|296484403|tpg|DAA26518.1| TPA: UV excision repair protein RAD23 homolog B [Bos taurus]
Length = 408
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|67621260|ref|XP_667750.1| RAD 23B protein [Cryptosporidium hominis TU502]
gi|54658903|gb|EAL37511.1| RAD 23B protein - channel catfish [Cryptosporidium hominis]
Length = 341
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 11/87 (12%)
Query: 15 PVSQAGATATATTPGNAE-------STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
P + A + T GN++ S LL G E + NIV+MG+ER VT A+RA+FN
Sbjct: 101 PAASATTSNIQTQSGNSDPSIDSRASALLTGTELEETITNIVNMGFEREQVTRAMRAAFN 160
Query: 68 NPDRAVEYLITGIPAAVVGEEAPVAAN 94
NPDRAVEYL +G+P E PVA N
Sbjct: 161 NPDRAVEYLTSGLPIP----ENPVAPN 183
>gi|417400397|gb|JAA47148.1| Putative nucleotide excision repair factor nef2 rad23 component
[Desmodus rotundus]
Length = 408
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|56789929|gb|AAH88364.1| RAD23 homolog A (S. cerevisiae) [Homo sapiens]
Length = 362
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>gi|194213056|ref|XP_001914974.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Equus
caballus]
Length = 393
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 182 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 235
>gi|449546744|gb|EMD37713.1| hypothetical protein CERSUDRAFT_83454 [Ceriporiopsis subvermispora
B]
Length = 363
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
S+ + GD + +QN+++MG+ER V ALRASFNNPDRAVEYL GIPA +
Sbjct: 148 SSFVTGDALQQSIQNMIEMGFERDQVMRALRASFNNPDRAVEYLFNGIPAHL 199
>gi|296190503|ref|XP_002743221.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 1
[Callithrix jacchus]
Length = 388
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 158 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 209
>gi|194033860|ref|XP_001927901.1| PREDICTED: UV excision repair protein RAD23 homolog B [Sus scrofa]
Length = 408
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>gi|281353038|gb|EFB28622.1| hypothetical protein PANDA_009870 [Ailuropoda melanoleuca]
Length = 339
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 128 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 181
>gi|338720420|ref|XP_003364163.1| PREDICTED: UV excision repair protein RAD23 homolog B isoform 2
[Equus caballus]
Length = 387
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 158 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 209
>gi|403216612|emb|CCK71108.1| hypothetical protein KNAG_0G00510 [Kazachstania naganishii CBS
8797]
Length = 375
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
N+ + G + V+ I++MGYER+ V ALRA+FNNPDRAVEYLITGIPAA E+
Sbjct: 118 NSTPDFVTGQQRNETVERIMEMGYERAQVERALRAAFNNPDRAVEYLITGIPAAQPAEQ 176
>gi|301771238|ref|XP_002921030.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ailuropoda melanoleuca]
Length = 375
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 165 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 218
>gi|149641954|ref|XP_001513724.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Ornithorhynchus anatinus]
Length = 360
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 53/94 (56%), Gaps = 20/94 (21%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP-------- 81
+A STL+ G EY M+ I+ MGYE+ V ALRASFNNP RAVEYL+ GIP
Sbjct: 150 DAASTLVTGSEYETMLTEIMSMGYEQEQVVAALRASFNNPHRAVEYLLMGIPGSPEPEGG 209
Query: 82 ----------AAVVGEEAPVA--ANEPQGNNIKQ 103
AAV G E P+ ++PQ N++Q
Sbjct: 210 PIQESQSNEQAAVEGGENPLEFLRDQPQFQNMRQ 243
>gi|190346878|gb|EDK39064.2| hypothetical protein PGUG_03162 [Meyerozyma guilliermondii ATCC
6260]
Length = 368
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
GDE +QNI++MGYER+ V ALRASFNNP RAVEYL+TGIP ++
Sbjct: 135 GDEREASIQNIMEMGYERTQVEAALRASFNNPHRAVEYLLTGIPESL 181
>gi|432091539|gb|ELK24564.1| UV excision repair protein RAD23 like protein B, partial [Myotis
davidii]
Length = 414
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 183 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 234
>gi|331250500|ref|XP_003337858.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316848|gb|EFP93439.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 10 STPSTPVSQAGATATATTP--GNAESTLLMGDEYGRMVQNIVD-MGYERSAVTEALRASF 66
S+ + P S A+A TP G + L+G + + IV+ MG+ R VT+A+RA+F
Sbjct: 114 SSTTAPASTDADNASAATPASGTQDPGFLVGSNLQKTIDEIVNGMGFPREQVTKAMRAAF 173
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPV 91
NNPDRAVEYL+TGIPA + APV
Sbjct: 174 NNPDRAVEYLMTGIPAGLDAPAAPV 198
>gi|62898690|dbj|BAD97199.1| UV excision repair protein RAD23 homolog B variant [Homo sapiens]
Length = 409
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DR VEYL+ GIP
Sbjct: 219 DRGVEYLLMGIP 230
>gi|344271527|ref|XP_003407589.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Loxodonta africana]
Length = 613
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 383 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 434
>gi|393245007|gb|EJD52518.1| UV excision repair protein Rad23 [Auricularia delicata TFB-10046
SS5]
Length = 375
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 36/44 (81%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
VQN+++MG+ER V AL+ASFNNPDRAVEYL GIPA +V EE
Sbjct: 139 VQNMIEMGFEREQVLRALKASFNNPDRAVEYLFNGIPAGLVAEE 182
>gi|213402873|ref|XP_002172209.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
gi|212000256|gb|EEB05916.1| UV excision repair protein RAD23 [Schizosaccharomyces japonicus
yFS275]
Length = 373
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 43/53 (81%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
+S+L++G + ++ N+V+MGYERS V A+RA+FNNPDRAVEYL+ GIP +V
Sbjct: 135 DSSLVLGAQRNAVIDNMVEMGYERSQVELAMRAAFNNPDRAVEYLLNGIPESV 187
>gi|47718026|gb|AAH70960.1| Rad23b protein [Rattus norvegicus]
Length = 252
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 7/74 (9%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A STP G ++ + +A S L+ G Y MV I+ MGYER V ALRASFN
Sbjct: 1 ADSTP-------GDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFN 53
Query: 68 NPDRAVEYLITGIP 81
NPDRAVEYL+ GIP
Sbjct: 54 NPDRAVEYLLMGIP 67
>gi|348535033|ref|XP_003455006.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 373
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
+ T ST V ++G A + A S L+ G Y MV ++ MGYER V ALRASF
Sbjct: 127 STTEASSTSVGRSGDAANLIS--EAVSNLVTGSSYDAMVNEMMLMGYEREQVVAALRASF 184
Query: 67 NNPDRAVEYLITGIPA 82
NNPDRA+EYL+TGIP+
Sbjct: 185 NNPDRAMEYLLTGIPS 200
>gi|209879445|ref|XP_002141163.1| UV excision repair protein Rad23 [Cryptosporidium muris RN66]
gi|209556769|gb|EEA06814.1| UV excision repair protein Rad23, putative [Cryptosporidium muris
RN66]
Length = 347
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%), Gaps = 12/82 (14%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAE--------STLLMGDEYGRMVQNIVDMGYERSAVT 59
+TS +TPV+ T T P N + S L+ G E + NIV+MG+ER+ V
Sbjct: 93 STSAQTTPVT----TNTGVIPNNCDQNTYESSASALITGTELETTINNIVNMGFERNQVI 148
Query: 60 EALRASFNNPDRAVEYLITGIP 81
A+RA+FNNPDRAVEYL +GIP
Sbjct: 149 AAMRAAFNNPDRAVEYLTSGIP 170
>gi|241950849|ref|XP_002418147.1| UV excision repair protein, putative [Candida dubliniensis CD36]
gi|223641486|emb|CAX43447.1| UV excision repair protein, putative [Candida dubliniensis CD36]
Length = 430
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 40/53 (75%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
EST +G E +QNI++MGYER V ALRA+FNNP RAVEYL+TGIP ++
Sbjct: 147 ESTFAVGSEREASIQNIMEMGYERPQVEAALRAAFNNPHRAVEYLLTGIPESL 199
>gi|392883244|gb|AFM90454.1| UV excision repair protein RAD23-like B isoform 5 [Callorhinchus
milii]
Length = 378
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
A S L+ G +Y MV I MGY R V AL+ASFNNPDRAVEYL+ GIP GE
Sbjct: 167 ATSALVTGQQYETMVTEITSMGYSREQVVAALKASFNNPDRAVEYLLMGIP----GERTR 222
Query: 91 VAANEPQ 97
+ N PQ
Sbjct: 223 SSVNNPQ 229
>gi|348565217|ref|XP_003468400.1| PREDICTED: UV excision repair protein RAD23 homolog A-like [Cavia
porcellus]
Length = 362
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGY+R V ALRAS
Sbjct: 128 SAPTASPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYDRERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>gi|345565734|gb|EGX48682.1| hypothetical protein AOL_s00079g321 [Arthrobotrys oligospora ATCC
24927]
Length = 408
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 5 PAAATSTPSTPVSQAGATATATTPG-NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
PAA TP TP Q AT+ TT N S+L MG + + +MG+ R V A+R
Sbjct: 120 PAAVPETP-TPAPQVAATSQPTTAAFNDPSSLAMGSARESAILQMTEMGFPRPDVEAAMR 178
Query: 64 ASFNNPDRAVEYLITGIPAAVVGEEAP 90
A+FNNPDRAVEYL+TGIP + E P
Sbjct: 179 AAFNNPDRAVEYLMTGIPEHLQREAPP 205
>gi|50550853|ref|XP_502899.1| YALI0D16401p [Yarrowia lipolytica]
gi|49648767|emb|CAG81090.1| YALI0D16401p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 59/100 (59%), Gaps = 14/100 (14%)
Query: 4 APAAATSTPSTPVSQA---GATATATTPG-NAESTLLMGDEYG----------RMVQNIV 49
A + + +TP P + G T T TT G +A +T +G E G + N+V
Sbjct: 106 ATSRSVATPGAPTNSGNVVGNTETPTTGGADASTTGDIGAESGPAASATAAVTTAINNMV 165
Query: 50 DMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
DMGY R V A+RA++NNP+RAVEYL+TGIP V+GEEA
Sbjct: 166 DMGYPRDQVEAAMRAAYNNPERAVEYLLTGIPDHVIGEEA 205
>gi|444315840|ref|XP_004178577.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
gi|387511617|emb|CCH59058.1| hypothetical protein TBLA_0B02160 [Tetrapisispora blattae CBS 6284]
Length = 404
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 7 AATSTPSTPVSQ----AGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
+A +TP P + A T TT A+ ++G E +Q I++MGY+R V AL
Sbjct: 110 SANATPEVPAATTSNAAAGDDTETTTSAADPGFVVGTERNETIQRIMEMGYQREEVEAAL 169
Query: 63 RASFNNPDRAVEYLITGIP 81
RA+FNNPDRAVEYL+ GIP
Sbjct: 170 RAAFNNPDRAVEYLLMGIP 188
>gi|344228919|gb|EGV60805.1| hypothetical protein CANTEDRAFT_137273 [Candida tenuis ATCC 10573]
gi|344228920|gb|EGV60806.1| UV excision repair protein Rad23 [Candida tenuis ATCC 10573]
Length = 356
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
+A S P P AT A A S G E +QNI++MGY+R V +ALRA+F
Sbjct: 96 SAASEPVAPT--PSATTVAPVSEEAGSAFAQGSEREATIQNIMEMGYDRDQVEQALRAAF 153
Query: 67 NNPDRAVEYLITGIPAAV 84
NNP RAVEYL+TGIP ++
Sbjct: 154 NNPHRAVEYLLTGIPESL 171
>gi|443919043|gb|ELU39338.1| UBA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 886
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 43/61 (70%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVA 92
S+ + G ++N++ MG+ER + ALRASFNNPDRAVEYL+TGIP ++ E AP A
Sbjct: 164 SSFVAGGALNSAIENMMGMGFEREQIMRALRASFNNPDRAVEYLLTGIPEHLLAETAPPA 223
Query: 93 A 93
+
Sbjct: 224 S 224
>gi|211909006|gb|ACJ12793.1| RAD23-like protein B [Sebastiscus marmoratus]
Length = 277
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 43/69 (62%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
ST V + A+ A S L+ G Y MV ++ MGYER V ALRASFNNPDRA
Sbjct: 67 STSVGSSEASTNTNLIDEAVSNLVTGASYDAMVNEMMLMGYEREQVVAALRASFNNPDRA 126
Query: 73 VEYLITGIP 81
VEYL+TGIP
Sbjct: 127 VEYLLTGIP 135
>gi|367007439|ref|XP_003688449.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
gi|357526758|emb|CCE66015.1| hypothetical protein TPHA_0O00440 [Tetrapisispora phaffii CBS 4417]
Length = 369
Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 2 IGAPAAATSTP---STPVSQAGATATATTPGNAEST------LLMGDEYGRMVQNIVDMG 52
+ AP A S P ST + A A +TT G T ++G + V I++MG
Sbjct: 91 VAAPEVAASAPVAESTETATEAAPAHSTTEGQQPVTASNDPGFVVGSQRNEAVDRIMEMG 150
Query: 53 YERSAVTEALRASFNNPDRAVEYLITGIP 81
YER V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 151 YEREEVERALRAAFNNPDRAVEYLLMGIP 179
>gi|348522726|ref|XP_003448875.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oreochromis niloticus]
Length = 481
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 38/52 (73%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
A S L+ G EY +V I+ +GYER V ALRAS+NNPDRAVEYL+ GIPA
Sbjct: 237 AASILVTGPEYENLVSEIMSIGYEREQVVAALRASYNNPDRAVEYLLMGIPA 288
>gi|156362373|ref|XP_001625753.1| predicted protein [Nematostella vectensis]
gi|156212600|gb|EDO33653.1| predicted protein [Nematostella vectensis]
Length = 364
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 38/51 (74%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
AES L G EY +V I++MG+ER V AL+ASFNNPDRAVEYL TGIP
Sbjct: 152 AESALATGTEYEGLVTEIMNMGFERDQVVRALQASFNNPDRAVEYLTTGIP 202
>gi|366995773|ref|XP_003677650.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
gi|342303519|emb|CCC71299.1| hypothetical protein NCAS_0G04120 [Naumovozyma castellii CBS 4309]
Length = 392
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----LLMGDEYGRMVQNIVDMGYERSAVT 59
+PAAA+ TP+ + A T+ G S ++G + + V+ I++MGYER V
Sbjct: 109 SPAAASETPAQLPATTEAAPATTSSGETSSAGSAGFVVGSQRDQTVERIMEMGYEREQVE 168
Query: 60 EALRASFNNPDRAVEYLITGIP 81
ALRA+FNNPDRAVEYL+ GIP
Sbjct: 169 SALRAAFNNPDRAVEYLLMGIP 190
>gi|410903534|ref|XP_003965248.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Takifugu rubripes]
Length = 384
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 40/59 (67%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
A S L+ G Y MV I+ MGY+R V ALRASFNNPDRAVEYL+TGIP G+ A
Sbjct: 152 AVSNLVTGPSYESMVNEIMLMGYDREQVVVALRASFNNPDRAVEYLLTGIPGRDQGQAA 210
>gi|30699439|ref|NP_850982.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|73620991|sp|Q84L33.3|RD23A_ARATH RecName: Full=Putative DNA repair protein RAD23-1; AltName:
Full=RAD23-like protein 1; Short=AtRAD23-1
gi|21593616|gb|AAM65583.1| DNA repair protein RAD23, putative [Arabidopsis thaliana]
gi|110735096|gb|ABG89118.1| Rad23-3Aii [synthetic construct]
gi|332198160|gb|AEE36281.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 371
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 106 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 165
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 166 ETVTRALRAAYNNPERAVDYLYSGIP 191
>gi|22330746|ref|NP_565216.2| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|14334442|gb|AAK59419.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|17104777|gb|AAL34277.1| putative DNA repair protein RAD23 [Arabidopsis thaliana]
gi|332198158|gb|AEE36279.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 365
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 100 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 159
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 160 ETVTRALRAAYNNPERAVDYLYSGIP 185
>gi|30409718|dbj|BAC76389.1| RAD23-like protein [Arabidopsis thaliana]
Length = 371
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 106 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 165
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 166 ETVTRALRAAYNNPERAVDYLYSGIP 191
>gi|30409720|dbj|BAC76390.1| RAD23-like protein [Arabidopsis thaliana]
Length = 365
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 100 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 159
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 160 ETVTRALRAAYNNPERAVDYLYSGIP 185
>gi|110735098|gb|ABG89119.1| Rad23-3Ai [synthetic construct]
Length = 365
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 100 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 159
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 160 ETVTRALRAAYNNPERAVDYLYSGIP 185
>gi|42572181|ref|NP_974181.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198159|gb|AEE36280.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 351
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 106 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 165
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 166 ETVTRALRAAYNNPERAVDYLYSGIP 191
>gi|15221013|ref|NP_173070.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
gi|73620992|sp|Q84L32.2|RD23B_ARATH RecName: Full=Putative DNA repair protein RAD23-2; AltName:
Full=RAD23-like protein 2; Short=AtRAD23-2
gi|110735100|gb|ABG89120.1| Rad23-3B [synthetic construct]
gi|332191297|gb|AEE29418.1| putative DNA repair protein RAD23-2 [Arabidopsis thaliana]
Length = 368
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNP 69
STPV Q TA + T G A STL+ G +MVQ I++MG +++ VT ALRA++NNP
Sbjct: 119 STPV-QEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNP 177
Query: 70 DRAVEYLITGIPAAV 84
+RAV+YL +GIP V
Sbjct: 178 ERAVDYLYSGIPETV 192
>gi|367011717|ref|XP_003680359.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
gi|359748018|emb|CCE91148.1| hypothetical protein TDEL_0C02590 [Torulaspora delbrueckii]
Length = 368
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
+PA + TP+ Q ++ T PG ++G + V+ I++MGYER V ALR
Sbjct: 97 SPAPQSETPAAETQQEASSTT--DPG-----FVVGAQRNEAVERIMEMGYEREQVDRALR 149
Query: 64 ASFNNPDRAVEYLITGIP 81
A+FNNPDRAVEYL+ GIP
Sbjct: 150 AAFNNPDRAVEYLLMGIP 167
>gi|145499454|ref|XP_001435712.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402847|emb|CAK68315.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 11/91 (12%)
Query: 28 PGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV-- 85
P + + LL G EY + ++ ++ MG++R A++A+FNNPDRAVEYL+ GIP V
Sbjct: 121 PAGSGTGLLSGPEYDKAIEQLMSMGFQREECVNAMKAAFNNPDRAVEYLLNGIPPGVTSH 180
Query: 86 -------GEEAPVAANEPQG--NNIKQFSSV 107
G+ P AA +P G N I+Q +
Sbjct: 181 PPAPVASGQGQPPAAQQPVGQPNQIQQLRQL 211
>gi|331230142|ref|XP_003327736.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306726|gb|EFP83317.1| UV excision repair protein Rad23 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 409
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 10 STPSTPVSQAGATATATTP--GNAESTLLMGDEYGRMVQNIVD-MGYERSAVTEALRASF 66
S+ + P S A+A TP G + L+G + + IV+ MG+ R VT+A+RA+F
Sbjct: 114 SSTTAPASTDADNASAATPASGTQDPGFLVGSNLQKTIDEIVNGMGFPREQVTKAMRAAF 173
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPV 91
NNPDRAVEYL+TGIPA + PV
Sbjct: 174 NNPDRAVEYLMTGIPAGLDAPAPPV 198
>gi|30409722|dbj|BAC76391.1| RAD23-like protein [Arabidopsis thaliana]
Length = 366
Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNP 69
STPV Q TA + T G A STL+ G +MVQ I++MG +++ VT ALRA++NNP
Sbjct: 117 STPV-QEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNP 175
Query: 70 DRAVEYLITGIPAAV 84
+RAV+YL +GIP V
Sbjct: 176 ERAVDYLYSGIPETV 190
>gi|393217532|gb|EJD03021.1| UV excision repair protein Rad23 [Fomitiporia mediterranea MF3/22]
Length = 406
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
++ L GD +QN+++MG+ER+ V A++ASFNNPDRAVEYL+ GIPA + E
Sbjct: 142 TSFLSGDALQASIQNMIEMGFERAQVMRAMKASFNNPDRAVEYLMNGIPAHLDAE 196
>gi|6587822|gb|AAF18513.1|AC010924_26 Contains similarity to gb|Y12014 RAD23 protein isoform II from
Daucus carota and is a member of the Ubiquitin PF|00240
family containing a UBA PF|00627 domain. EST gb|H37284
comes from this gene [Arabidopsis thaliana]
Length = 246
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNP 69
STPV Q TA + T G A STL+ G +MVQ I++MG +++ VT ALRA++NNP
Sbjct: 106 STPV-QEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNP 164
Query: 70 DRAVEYLITGIPAAV 84
+RAV+YL +GIP V
Sbjct: 165 ERAVDYLYSGIPETV 179
>gi|322698416|gb|EFY90186.1| UV excision repair protein (RadW), putative [Metarhizium acridum
CQMa 102]
Length = 400
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 4 APAAATST----PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVT 59
APA +++T P+TP Q A G S L MG E + N+ MG+ERS +
Sbjct: 129 APAQSSTTQSAAPATPTPQRSGEAG----GETGSGLAMGAERAEAITNMEAMGFERSQIE 184
Query: 60 EALRASFNNPDRAVEYLITGIPAAVVGEE 88
A+RA+FNNPDRAVEYL+ GIP + E+
Sbjct: 185 AAMRAAFNNPDRAVEYLLNGIPENIQQEQ 213
>gi|408391366|gb|EKJ70745.1| hypothetical protein FPSE_09115 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 12 PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDR 71
P+TP Q A A + P S L MG + + N+ MG+ERS + A+RA+FNNPDR
Sbjct: 115 PATPTPQRSADAGSEEP----SGLAMGSQRTEAIANMEAMGFERSQIEAAMRAAFNNPDR 170
Query: 72 AVEYLITGIPAAVVGEE 88
AVEYL+ GIP + E+
Sbjct: 171 AVEYLLNGIPDNIRQEQ 187
>gi|342883708|gb|EGU84158.1| hypothetical protein FOXB_05335 [Fusarium oxysporum Fo5176]
Length = 390
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T+ P+TP Q A S L MG + + N+ MG+ERS + A+RA+FNN
Sbjct: 114 TAVPATPTPQRSVDAGTGAQAEEPSGLAMGSQRTEAIANMEAMGFERSQIEAAMRAAFNN 173
Query: 69 PDRAVEYLITGIPAAVVGEE 88
PDRAVEYL+ GIP + E+
Sbjct: 174 PDRAVEYLLNGIPDNIRQEQ 193
>gi|426197465|gb|EKV47392.1| hypothetical protein AGABI2DRAFT_192582 [Agaricus bisporus var.
bisporus H97]
Length = 404
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 12/80 (15%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA--- 89
S L G +QN+++MG++R V ALRAS+NNPDRAVEYL+TGIPA + E A
Sbjct: 145 SGFLTGAALQTTIQNMMEMGFDREQVLRALRASYNNPDRAVEYLMTGIPAHLEAEAAGPP 204
Query: 90 ---------PVAANEPQGNN 100
P A + PQ N+
Sbjct: 205 RTSSTTQSNPAAPSAPQSNS 224
>gi|46124779|ref|XP_386943.1| hypothetical protein FG06767.1 [Gibberella zeae PH-1]
Length = 359
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 11 TPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
P+TP Q A A + P S L MG + + N+ MG+ERS + A+RA+FNNPD
Sbjct: 92 VPATPTPQRSADAGSEEP----SGLAMGSQRTEAIANMEAMGFERSQIEAAMRAAFNNPD 147
Query: 71 RAVEYLITGIPAAVVGEE 88
RAVEYL+ GIP + E+
Sbjct: 148 RAVEYLLNGIPDNIRQEQ 165
>gi|432885045|ref|XP_004074630.1| PREDICTED: UV excision repair protein RAD23 homolog B-like [Oryzias
latipes]
Length = 395
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 39/56 (69%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVG 86
A STL+ G Y MV ++ MGYER V ALRAS+NNPDRAVEYL++GIP G
Sbjct: 155 AVSTLVTGSSYDTMVNEMMLMGYEREQVVAALRASYNNPDRAVEYLLSGIPGQDQG 210
>gi|344302977|gb|EGW33251.1| hypothetical protein SPAPADRAFT_60596 [Spathaspora passalidarum
NRRL Y-27907]
Length = 377
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 39/52 (75%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
ST +G E +QNI++MGY+R V ALRA+FNNP RAVEYLITGIP ++
Sbjct: 133 STFAVGSEREATIQNIMEMGYDRPQVENALRAAFNNPHRAVEYLITGIPESL 184
>gi|384493836|gb|EIE84327.1| UV excision repair protein Rad23 [Rhizopus delemar RA 99-880]
Length = 386
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
S L+ G + +V+N++ MG+ER+ ALRASFNNPDRAVEYL GIP ++ E
Sbjct: 152 SQLVTGSQLESVVENMMSMGFERAQCERALRASFNNPDRAVEYLFNGIPEHILNE 206
>gi|256082442|ref|XP_002577465.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|360044631|emb|CCD82179.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 341
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 6/83 (7%)
Query: 5 PAAATSTPSTPVSQAGATATA-----TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVT 59
P +P T ++A + TA +T G ES+L+ G+ + R+V+ ++ MG+ERS V
Sbjct: 99 PTTDKKSPVTEANEAPSITTAPSSATSTLGFGESSLVTGENFERVVKELMSMGFERSLVI 158
Query: 60 EALRASFNNPDRAVEYLITG-IP 81
+A+RA FNNPDRA EYL +G IP
Sbjct: 159 QAMRAGFNNPDRAFEYLSSGNIP 181
>gi|326469095|gb|EGD93104.1| UV excision repair protein [Trichophyton tonsurans CBS 112818]
Length = 381
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 2/78 (2%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
A AAA+ TP+TP GA++ AT N S LLMG++ + ++ MG+ R + A+R
Sbjct: 107 ANAAASETPATPSPAGGASSGATF--NDPSALLMGNQGQEAITQMLAMGFSRGDIDRAMR 164
Query: 64 ASFNNPDRAVEYLITGIP 81
A++ NPDRA+EYL+ GIP
Sbjct: 165 AAYFNPDRAIEYLLNGIP 182
>gi|149248070|ref|XP_001528422.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448376|gb|EDK42764.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 359
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
TA T N EST +G E + NI++MGY+R V ALRA+FNNP RAVEYLITGIP +
Sbjct: 53 TAPTASN-ESTFALGSEREATILNIMEMGYDRPQVEAALRAAFNNPHRAVEYLITGIPES 111
Query: 84 V 84
+
Sbjct: 112 L 112
>gi|440796341|gb|ELR17450.1| Rad23, putative [Acanthamoeba castellanii str. Neff]
Length = 393
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
A S L+ G ++ MV NI++MG+ R V ALRASFNNP+RAVEYL+TGIP
Sbjct: 130 AASALVTGSDFEAMVSNIMEMGFPREEVLRALRASFNNPNRAVEYLMTGIP 180
>gi|291416572|ref|XP_002724522.1| PREDICTED: UV excision repair protein RAD23 homolog B-like, partial
[Oryctolagus cuniculus]
Length = 365
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
G P A + TP + AG ++ A A LL +MV IV MGYER V AL
Sbjct: 170 GPPGAPSPTPDDAI--AGPSSRAQPSEQAARALLTRPASEQMVAEIVSMGYEREHVLAAL 227
Query: 63 RASFNNPDRAVEYLITGIPAAVVGEEAPVAANEP 96
RASFNNP RAVEYL+ G+P G+ A A EP
Sbjct: 228 RASFNNPHRAVEYLLMGLP----GDRASAAEVEP 257
>gi|323305178|gb|EGA58925.1| Rad23p [Saccharomyces cerevisiae FostersB]
Length = 401
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188
>gi|259145863|emb|CAY79123.1| Rad23p [Saccharomyces cerevisiae EC1118]
gi|323349008|gb|EGA83243.1| Rad23p [Saccharomyces cerevisiae Lalvin QA23]
Length = 408
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188
>gi|4261672|gb|AAD13972.1|S65964_1111 Unknown [Saccharomyces cerevisiae]
gi|347495|gb|AAA34935.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|347499|gb|AAA34938.1| UV excision repair protein [Saccharomyces cerevisiae]
gi|430824|gb|AAB28441.1| RAD23 [Saccharomyces cerevisiae]
Length = 398
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188
>gi|398364251|ref|NP_010877.3| Rad23p [Saccharomyces cerevisiae S288c]
gi|418413|sp|P32628.1|RAD23_YEAST RecName: Full=UV excision repair protein RAD23
gi|409247|gb|AAA16070.1| DNA repair protein [Saccharomyces cerevisiae]
gi|603642|gb|AAB65005.1| Rad23p [Saccharomyces cerevisiae]
gi|51013487|gb|AAT93037.1| YEL037C [Saccharomyces cerevisiae]
gi|151944674|gb|EDN62933.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
gi|190405529|gb|EDV08796.1| UV excision repair protein RAD23 [Saccharomyces cerevisiae RM11-1a]
gi|285811588|tpg|DAA07616.1| TPA: Rad23p [Saccharomyces cerevisiae S288c]
gi|323309458|gb|EGA62674.1| Rad23p [Saccharomyces cerevisiae FostersO]
gi|323333880|gb|EGA75269.1| Rad23p [Saccharomyces cerevisiae AWRI796]
gi|349577621|dbj|GAA22789.1| K7_Rad23p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765999|gb|EHN07500.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299909|gb|EIW11001.1| Rad23p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 398
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188
>gi|226470142|emb|CAX70352.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489693|emb|CAX74997.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489695|emb|CAX74998.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
gi|226489697|emb|CAX74999.1| UV excision repair protein RAD23 homolog B [Schistosoma japonicum]
Length = 350
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A S PS P + T T G ES+L+ G+ + R+VQ +V MG+E+ V A+RA FN
Sbjct: 116 ANSQPSLPTVTTTQSTTTNTLGFGESSLVTGENFERVVQELVSMGFEKPLVIRAMRAGFN 175
Query: 68 NPDRAVEYLITG 79
NPDRA EYL +G
Sbjct: 176 NPDRAFEYLSSG 187
>gi|392569695|gb|EIW62868.1| UV excision repair protein Rad23 [Trametes versicolor FP-101664
SS1]
Length = 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 7 AATSTPSTPV-SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
AA P+ P+ + A A A + G+ L G+ VQN+++MG+ER V ALRAS
Sbjct: 115 AAPQPPNAPILTPAQAAPVAPSLGDG---FLTGEALQGTVQNMIEMGFEREQVMRALRAS 171
Query: 66 FNNPDRAVEYLITGIPAAV 84
FNNP+RAVEYL GIPA +
Sbjct: 172 FNNPERAVEYLFNGIPAHL 190
>gi|256273801|gb|EEU08724.1| Rad23p [Saccharomyces cerevisiae JAY291]
Length = 398
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188
>gi|256082440|ref|XP_002577464.1| uv excision repair protein rad23 [Schistosoma mansoni]
gi|84657284|gb|ABC60029.1| DNA repair protein [Schistosoma mansoni]
gi|360044630|emb|CCD82178.1| putative uv excision repair protein rad23 [Schistosoma mansoni]
Length = 354
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
V+ A ++AT+T G ES+L+ G+ + R+V+ ++ MG+ERS V +A+RA FNNPDRA EY
Sbjct: 129 VTTAPSSATSTL-GFGESSLVTGENFERVVKELMSMGFERSLVIQAMRAGFNNPDRAFEY 187
Query: 76 LITG-IP 81
L +G IP
Sbjct: 188 LSSGNIP 194
>gi|76156833|gb|AAX27952.2| SJCHGC06167 protein [Schistosoma japonicum]
Length = 231
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 45/72 (62%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A S PS P + T T G ES+L+ G+ + R+VQ +V MG+E+ V A+RA FN
Sbjct: 116 ANSQPSLPTVTTTQSTTTNTLGFGESSLVTGENFERVVQELVSMGFEKPLVIRAMRAGFN 175
Query: 68 NPDRAVEYLITG 79
NPDRA EYL +G
Sbjct: 176 NPDRAFEYLSSG 187
>gi|358387006|gb|EHK24601.1| hypothetical protein TRIVIDRAFT_84601 [Trichoderma virens Gv29-8]
Length = 361
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
TST + P + +A TP S L MG E + N+ MG+ER+ + A+RA+FNN
Sbjct: 107 TSTQAAPPATPTPNRSAGTP----SGLAMGSERAEAIANMEAMGFERTQIEAAMRAAFNN 162
Query: 69 PDRAVEYLITGIPAAV 84
PDRAVEYL+TGIP +V
Sbjct: 163 PDRAVEYLLTGIPESV 178
>gi|297844544|ref|XP_002890153.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
gi|297335995|gb|EFH66412.1| hypothetical protein ARALYDRAFT_312599 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 5/87 (5%)
Query: 2 IGAPAAAT-STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSA 57
+ AP+ A ++ STPV Q A + T G A STL+ G +MVQ I++MG +++
Sbjct: 103 LAAPSIAVPASNSTPV-QEQLPAQSDTYGQAASTLVSGSSVEQMVQQIMEMGGGSWDKET 161
Query: 58 VTEALRASFNNPDRAVEYLITGIPAAV 84
VT ALRA++NNP+RAV+YL +GIP V
Sbjct: 162 VTRALRAAYNNPERAVDYLYSGIPETV 188
>gi|409080544|gb|EKM80904.1| hypothetical protein AGABI1DRAFT_112618 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 409
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
S L G +QN+++MG++R V ALRAS+NNPDRAVEYL+TGIPA + E A
Sbjct: 147 SGFLTGAALQTTIQNMMEMGFDREQVLRALRASYNNPDRAVEYLMTGIPAHLEAEAA 203
>gi|363746935|ref|XP_003643857.1| PREDICTED: UV excision repair protein RAD23 homolog A-like
[Gallus gallus]
Length = 214
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 37/54 (68%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPV 91
G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP + E PV
Sbjct: 13 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEAERPPV 66
>gi|159162478|pdb|1IFY|A Chain A, Solution Structure Of The Internal Uba Domain Of Hhr23a
Length = 49
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 36/48 (75%)
Query: 34 TLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
TL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP
Sbjct: 1 TLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIP 48
>gi|71022291|ref|XP_761375.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
gi|46097608|gb|EAK82841.1| hypothetical protein UM05228.1 [Ustilago maydis 521]
Length = 447
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 21 ATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
++A P + L G +Q++V+MG+ER V A+RA+FNNPDRAVEYL+TGI
Sbjct: 159 SSAQTQQPSGTSGSFLTGGALESAMQSMVEMGFERDQVQRAMRAAFNNPDRAVEYLMTGI 218
Query: 81 PAAVV 85
P +V
Sbjct: 219 PEHLV 223
>gi|320583701|gb|EFW97914.1| Rad23p [Ogataea parapolymorpha DL-1]
Length = 350
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
+PA A + + P A ++AT ST G +QNI+ MG+ER V +AL
Sbjct: 89 ASPAGAAAPVAEPAQPAQEGSSATPAAFDASTFASGSVRETAIQNIMAMGFERPQVEQAL 148
Query: 63 RASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
A+FNNPDRAVEYL++GIP A + EPQ
Sbjct: 149 TAAFNNPDRAVEYLLSGIPQRTAEPPAAAQSGEPQ 183
>gi|150864814|ref|XP_001383791.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
gi|149386070|gb|ABN65762.2| nucleotide excision repair protein (ubiquitin-like protein)
[Scheffersomyces stipitis CBS 6054]
Length = 366
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 40/55 (72%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVA 92
G E +QNI++MGY+R+ V ALRA+FNNP RAVEYL+TGIP ++ E P A
Sbjct: 130 GSEREASIQNIMEMGYQRAEVENALRAAFNNPHRAVEYLLTGIPQSLQRPEVPAA 184
>gi|323355384|gb|EGA87208.1| Rad23p [Saccharomyces cerevisiae VL3]
Length = 335
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 71 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 125
>gi|322707150|gb|EFY98729.1| nucleotide excision repair protein RAD23 [Metarhizium anisopliae
ARSEF 23]
Length = 383
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
++ P+TP Q A G S L MG E + N+ MG+ERS + A+RA+FNN
Sbjct: 117 SAAPATPTPQRSGEAG----GETGSGLAMGAERAEAITNMEAMGFERSQIEAAMRAAFNN 172
Query: 69 PDRAVEYLITGIPAAVVGEE 88
PDRAVEYL+ GIP + E+
Sbjct: 173 PDRAVEYLLNGIPENIQQEQ 192
>gi|302506096|ref|XP_003015005.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
gi|291178576|gb|EFE34365.1| hypothetical protein ARB_06765 [Arthroderma benhamiae CBS 112371]
Length = 380
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
A A A+ TP+TP GA++ AT N S LLMG++ + ++ MG+ R + A+R
Sbjct: 107 ASAPASETPATPSPAGGASSGATF--NDPSALLMGNQGQEAITQMLAMGFSRGDIDRAMR 164
Query: 64 ASFNNPDRAVEYLITGIP 81
A++ NPDRA+EYL+ GIP
Sbjct: 165 AAYFNPDRAIEYLLNGIP 182
>gi|400602559|gb|EJP70161.1| UV excision repair protein Rad23 [Beauveria bassiana ARSEF 2860]
Length = 397
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 12 PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDR 71
P+TP ATA G++ + L MG E + ++ MG+ERS + A+RA+FNNPDR
Sbjct: 137 PATPTPNRSTDATAPAGGDS-AGLTMGTERAAAITSMEAMGFERSQIEAAMRAAFNNPDR 195
Query: 72 AVEYLITGIP 81
AVEYL+TGIP
Sbjct: 196 AVEYLLTGIP 205
>gi|154292520|ref|XP_001546834.1| nucleotide excision repair protein RAD23 [Botryotinia fuckeliana
B05.10]
gi|347836511|emb|CCD51083.1| similar to UV excision repair protein (RadW) [Botryotinia
fuckeliana]
Length = 376
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 9 TSTPSTPVSQAGAT--ATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
T+ P+TP S AGA+ A TP N + L MG E + + MG+ERS + A+RA+F
Sbjct: 113 TAVPATP-SPAGASIPAPQATPSNETTGLAMGAERSAQIAEMESMGFERSQIEAAMRAAF 171
Query: 67 NNPDRAVEYLITGIPAAVVGEEAPVAA 93
N +RA+EYL+ GIP ++ E+ P A
Sbjct: 172 YNSERAIEYLLNGIPERLLQEQQPTPA 198
>gi|410079523|ref|XP_003957342.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
gi|372463928|emb|CCF58207.1| hypothetical protein KAFR_0E00530 [Kazachstania africana CBS 2517]
Length = 379
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+ +TPG + G E V+ I++MGYER V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 126 STSTPG-----FVTGSERNETVERIMEMGYERDQVERALRAAFNNPDRAVEYLLMGIP 178
>gi|327292408|ref|XP_003230903.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
gi|326466939|gb|EGD92392.1| UV excision repair protein Rad2 [Trichophyton rubrum CBS 118892]
Length = 365
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
A A A+ TP+TP GA++ AT N S LLMG++ + ++ MG+ R + A+R
Sbjct: 92 ASAPASETPATPSPAGGASSGATF--NDPSALLMGNQGQEAITQMLAMGFSRGDIDRAMR 149
Query: 64 ASFNNPDRAVEYLITGIP 81
A++ NPDRA+EYL+ GIP
Sbjct: 150 AAYFNPDRAIEYLLNGIP 167
>gi|448122735|ref|XP_004204517.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|448125012|ref|XP_004205075.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358249708|emb|CCE72774.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
gi|358350056|emb|CCE73335.1| Piso0_000368 [Millerozyma farinosa CBS 7064]
Length = 366
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 37/47 (78%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
GDE ++NI++MGYER V ALRA+FNNP RAVEYL+TGIP ++
Sbjct: 128 GDERENNIRNIMEMGYERPQVEAALRAAFNNPHRAVEYLLTGIPESL 174
>gi|221481235|gb|EEE19636.1| UV excision repair protein rad23, putative [Toxoplasma gondii GT1]
Length = 348
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
S+P S AT+ + AES L G + + ++V MG+ RS EA+RA+FNNPDRA
Sbjct: 145 SSPSSAPDATSEGLSRAAAESALFTGPQLEETLTHLVAMGFPRSQAEEAMRAAFNNPDRA 204
Query: 73 VEYLITGIPAAV 84
VEYL+ G+P V
Sbjct: 205 VEYLMNGMPPEV 216
>gi|390602258|gb|EIN11651.1| UV excision repair protein Rad23 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 399
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 37/52 (71%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
S+ + GD + + +++MG+ER V ALRASFNNPDRAVEYL GIPA +
Sbjct: 145 SSFVTGDALQQSINGMIEMGFEREQVMRALRASFNNPDRAVEYLFNGIPAHL 196
>gi|299751880|ref|XP_002911697.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
gi|298409576|gb|EFI28203.1| hypothetical protein CC1G_06820 [Coprinopsis cinerea okayama7#130]
Length = 377
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
TA G + L G Y VQN+V+MG+ + V A+RASFNNPDRAV+YL+ GIP
Sbjct: 129 TAAPAQEGFGTGSFLSGAAYQNAVQNLVEMGFPQEQVVRAMRASFNNPDRAVDYLMNGIP 188
Query: 82 AAVVGE 87
A + E
Sbjct: 189 AHLEAE 194
>gi|302668202|ref|XP_003025675.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
gi|291189798|gb|EFE45064.1| hypothetical protein TRV_00140 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
A A A+ TP+TP GA++ AT N S LLMG++ + ++ MG+ R + A+R
Sbjct: 107 ANAPASETPATPSPAGGASSGATF--NDPSALLMGNQGQEAITQMLAMGFSRGDIDRAMR 164
Query: 64 ASFNNPDRAVEYLITGIP 81
A++ NPDRA+EYL+ GIP
Sbjct: 165 AAYFNPDRAIEYLLNGIP 182
>gi|395333137|gb|EJF65515.1| UV excision repair protein Rad23 [Dichomitus squalens LYAD-421 SS1]
Length = 396
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 14 TPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAV 73
TP A A P + + L G+ V N+++MG+ER V ALRASFNNP+RAV
Sbjct: 129 TPAQAAPIEGAAPVPA-GDGSFLTGEALQSTVNNMIEMGFEREQVMRALRASFNNPERAV 187
Query: 74 EYLITGIPAAV 84
EYL GIPA +
Sbjct: 188 EYLFNGIPAHL 198
>gi|237844371|ref|XP_002371483.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|95007044|emb|CAJ20260.1| DNA repair protein rad23 homolog b, putative [Toxoplasma gondii RH]
gi|211969147|gb|EEB04343.1| UV excision repair protein rhp23, putative [Toxoplasma gondii ME49]
gi|221501783|gb|EEE27543.1| UV excision repair protein rhp23, putative [Toxoplasma gondii VEG]
Length = 380
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 45/72 (62%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
S+P S AT+ + AES L G + + ++V MG+ RS EA+RA+FNNPDRA
Sbjct: 145 SSPSSAPDATSEGLSRAAAESALFTGPQLEETLTHLVAMGFPRSQAEEAMRAAFNNPDRA 204
Query: 73 VEYLITGIPAAV 84
VEYL+ G+P V
Sbjct: 205 VEYLMNGMPPEV 216
>gi|406602239|emb|CCH46169.1| putative DNA repair protein RAD23-3 [Wickerhamomyces ciferrii]
Length = 394
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
+A TPS QAG ST G + + NI++MGYER V +ALRA+F
Sbjct: 120 SAQPTPSQQPEQAGDFDA--------STFATGSAREKAIANIMEMGYERPQVEQALRAAF 171
Query: 67 NNPDRAVEYLITGI 80
NNPDRAVEYL+TGI
Sbjct: 172 NNPDRAVEYLLTGI 185
>gi|401626135|gb|EJS44097.1| rad23p [Saccharomyces arboricola H-6]
Length = 401
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 15/102 (14%)
Query: 4 APAAATSTP---STPVSQAGAT----ATATTPGNAESTLLMGDEYGRMVQNIVDMGYERS 56
AP A TST S P + +T +A+TPG ++G + ++ I++MGY R
Sbjct: 112 APTAETSTAAEGSQPQEEQTSTTEPAGSASTPG-----FVVGTQRNETIERIMEMGYPRE 166
Query: 57 AVTEALRASFNNPDRAVEYLITGIPAAVVG---EEAPVAANE 95
V ALRA+FNNPDRAVEYL+ GIP + ++ VAANE
Sbjct: 167 EVERALRAAFNNPDRAVEYLLMGIPENLRQPDPQQQAVAANE 208
>gi|444725253|gb|ELW65827.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 367
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 9/71 (12%)
Query: 20 GATATATTPGNAESTLLM---------GDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
G T+T T G+A ++ ++ G Y MV I+ MGYE++ V ALRASFN+P
Sbjct: 124 GPTSTGWTAGDASASNMLAGATGALTPGQSYQDMVSEIMSMGYEQAQVIAALRASFNDPH 183
Query: 71 RAVEYLITGIP 81
RAVEYL+TGIP
Sbjct: 184 RAVEYLLTGIP 194
>gi|283945482|ref|NP_001164652.1| nuclear excision repair protein rad23 [Bombyx mori]
gi|217331039|gb|ACK38234.1| nuclear excision repair protein Rad23 [Bombyx mori]
Length = 324
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 59/111 (53%), Gaps = 23/111 (20%)
Query: 1 MIGAPAAATSTP-STPVSQAGATATATT---------------PGNAESTLLM------- 37
M+ P + S P ST + +AG +A+ + P AE+ +
Sbjct: 72 MVTKPKVSESQPTSTSIPEAGESASTDSGDAKPKTVPPEEVVKPTTAETERVTETPNTTS 131
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
E +Q+I+DMGY+R V +ALRASFNN +RAVEYLITGIP ++ E+
Sbjct: 132 DAELEATIQSIMDMGYDRPQVEQALRASFNNRERAVEYLITGIPEELLHEQ 182
>gi|224284592|gb|ACN40029.1| unknown [Picea sitchensis]
Length = 403
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 48/73 (65%), Gaps = 4/73 (5%)
Query: 13 STPVSQAGATAT-ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNN 68
+TP + AG T T A G A S L+ G+ ++Q I+DMG ++R V ALRA++NN
Sbjct: 122 ATPTAGAGTTQTDADVYGQAASNLVAGNNLEHVIQQILDMGGGSWDRDTVVRALRAAYNN 181
Query: 69 PDRAVEYLITGIP 81
P+RAVEYL +GIP
Sbjct: 182 PERAVEYLYSGIP 194
>gi|384248073|gb|EIE21558.1| UV excision repair protein Rad23 [Coccomyxa subellipsoidea C-169]
Length = 382
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++LLMG + + IV+MG++R V A+RA+FNNPDRAVEYL+TGIP
Sbjct: 142 NSLLMGTQLESTIAGIVEMGFDREEVVRAMRAAFNNPDRAVEYLMTGIP 190
>gi|255080554|ref|XP_002503857.1| predicted protein [Micromonas sp. RCC299]
gi|226519124|gb|ACO65115.1| predicted protein [Micromonas sp. RCC299]
Length = 374
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 23 ATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
A A TP +S+L+ G + N++ MG+ER A ALRA+FNNPDRAVEYL+TGIP
Sbjct: 121 APAGTP--TDSSLVTGAALQETINNMMSMGFERDACVRALRAAFNNPDRAVEYLLTGIP 177
>gi|449439755|ref|XP_004137651.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 358
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEA 61
P A STP +Q + T G A S L+ G+ + VQ ++DMG ++R V A
Sbjct: 95 PVAQPVLSSTPAAQVTPSVQTDTYGQAASNLVAGNNLEQTVQQLMDMGGGNWDRETVVRA 154
Query: 62 LRASFNNPDRAVEYLITGIP 81
LRA++NNP+RAV+YL +GIP
Sbjct: 155 LRAAYNNPERAVDYLYSGIP 174
>gi|297842761|ref|XP_002889262.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
gi|297335103|gb|EFH65521.1| hypothetical protein ARALYDRAFT_316857 [Arabidopsis lyrata subsp.
lyrata]
Length = 365
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 10 STPSTPVS-QAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRAS 65
+ P++P++ Q A T G A STL+ G +MVQ I++MG +++ VT ALRA+
Sbjct: 110 AVPASPITAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 169
Query: 66 FNNPDRAVEYLITGIP 81
+NNP+RAV+YL +GIP
Sbjct: 170 YNNPERAVDYLYSGIP 185
>gi|444723953|gb|ELW64577.1| UV excision repair protein RAD23 like protein B [Tupaia chinensis]
Length = 302
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 35/51 (68%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ I
Sbjct: 160 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMQI 210
>gi|356550683|ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 353
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 5 PAAATSTP-STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTE 60
P STP STP+ Q T T G A S L+ G + +Q ++DMG ++R VT
Sbjct: 95 PPTTVSTPNSTPLVQP--HVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTC 152
Query: 61 ALRASFNNPDRAVEYLITGIPAA 83
ALRA++NNP+RAV+YL +GIP A
Sbjct: 153 ALRAAYNNPERAVDYLYSGIPVA 175
>gi|334185033|ref|NP_001189793.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640305|gb|AEE73826.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 418
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 2 IGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAV 58
I P AT + STP + G A S L G +Q I+DMG ++R V
Sbjct: 147 IPEPVPATISSSTPAPDSAPVGQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRETV 206
Query: 59 TEALRASFNNPDRAVEYLITGIP 81
ALRA+FNNP+RAVEYL TGIP
Sbjct: 207 VLALRAAFNNPERAVEYLYTGIP 229
>gi|308808630|ref|XP_003081625.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS)
[Ostreococcus tauri]
gi|116060090|emb|CAL56149.1| Nucleotide excision repair factor NEF2, RAD23 component (ISS),
partial [Ostreococcus tauri]
Length = 245
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 37/47 (78%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++MG E V NI+ MG+ER V +ALRA+FNNPDRAVEYL+TGIP
Sbjct: 9 MVMGPELEATVANIMTMGFEREQVLKALRAAFNNPDRAVEYLLTGIP 55
>gi|426228904|ref|XP_004008535.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 2
[Ovis aries]
Length = 311
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 36 LMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 161 VTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 208
>gi|363751284|ref|XP_003645859.1| hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889493|gb|AET39042.1| Hypothetical protein Ecym_3572 [Eremothecium cymbalariae
DBVPG#7215]
Length = 443
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAAN 94
+ G + ++ I++MGYERS V ALRA+FNNPDRAVEYL+ GIP E AA
Sbjct: 158 FVTGSQRNETIERIMEMGYERSQVESALRAAFNNPDRAVEYLLMGIP------EHLQAAP 211
Query: 95 EPQGNNI 101
+P G+ +
Sbjct: 212 QPAGSGV 218
>gi|50292795|ref|XP_448830.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528143|emb|CAG61800.1| unnamed protein product [Candida glabrata]
Length = 392
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
++G E ++ I++MGYER+ V ALRA+FNNPDRAVEYL+ GIP + +E
Sbjct: 137 FVVGSERNATIERIMEMGYERAEVERALRAAFNNPDRAVEYLLMGIPETLRPQE 190
>gi|50309879|ref|XP_454953.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644088|emb|CAH00040.1| KLLA0E22133p [Kluyveromyces lactis]
Length = 383
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
G +++ + G + V I++MGY+R V ALRA+FNNPDRAVEYL+ GIP A
Sbjct: 128 GTTDASFVTGSQRNETVNRIMEMGYDREQVERALRAAFNNPDRAVEYLLMGIPEA 182
>gi|401840717|gb|EJT43420.1| RAD23-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 397
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 4 APAAATSTPST-PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
APAA P P S + +TPG ++G + ++ I++MGY R V AL
Sbjct: 114 APAAEELQPQEEPSSNTEQAESVSTPG-----FVVGTQRNETIERIMEMGYPREEVERAL 168
Query: 63 RASFNNPDRAVEYLITGIP 81
RA+FNNPDRAVEYL+ GIP
Sbjct: 169 RAAFNNPDRAVEYLLMGIP 187
>gi|426228902|ref|XP_004008534.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 1
[Ovis aries]
Length = 365
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 36 LMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 161 VTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 208
>gi|390335920|ref|XP_001176797.2| PREDICTED: UV excision repair protein RAD23 homolog B-like isoform
1 [Strongylocentrotus purpuratus]
Length = 467
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
VS G +AESTL+ G+EY MV ++ +G+ R V A++AS+NNP+RA EY
Sbjct: 197 VSNKGGAIAHQAFHSAESTLVTGEEYQNMVTELMSLGFPRDKVIRAMQASYNNPNRAAEY 256
Query: 76 LITGIP 81
L+ GIP
Sbjct: 257 LVVGIP 262
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+AESTL+ G+EY MV ++ +G+ R V A++AS+NNP+RA EYL+ + +A
Sbjct: 149 SAESTLVTGEEYQNMVTELMSLGFPRDKVIRAMQASYNNPNRAAEYLVVSNKGGAIAHQA 208
>gi|389741638|gb|EIM82826.1| UV excision repair protein Rad23 [Stereum hirsutum FP-91666 SS1]
Length = 395
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
S+ L G+ +QN+V+MG+ R V A+RAS+NNPDRAVEYL+TGIP + E
Sbjct: 136 SSFLTGNALQSSIQNMVEMGFPRDQVLRAMRASYNNPDRAVEYLMTGIPEHLQAE 190
>gi|345327426|ref|XP_001507990.2| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Ornithorhynchus anatinus]
Length = 292
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 34/48 (70%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+
Sbjct: 199 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLL 246
>gi|452824592|gb|EME31594.1| nucleotide excision repair protein [Galdieria sulphuraria]
Length = 432
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 21 ATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
AT+++ S ++G +Y V+N+++MG+E V ALRA+F+NPDRAVEYL GI
Sbjct: 132 ATSSSQPTSGTSSDFVIGSQYETTVKNLMEMGFEEQQVKRALRAAFHNPDRAVEYLFNGI 191
Query: 81 P 81
P
Sbjct: 192 P 192
>gi|365761179|gb|EHN02849.1| Rad23p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 397
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 4 APAAATSTPST-PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
APAA P P S + +TPG ++G + ++ I++MGY R V AL
Sbjct: 114 APAAEELQPQEEPNSNTEQVESVSTPG-----FVVGTQRNETIERIMEMGYPREEVERAL 168
Query: 63 RASFNNPDRAVEYLITGIP 81
RA+FNNPDRAVEYL+ GIP
Sbjct: 169 RAAFNNPDRAVEYLLMGIP 187
>gi|392593502|gb|EIW82827.1| UV excision repair protein Rad23 [Coniophora puteana RWD-64-598
SS2]
Length = 424
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 26 TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
T P N + L G VQNI++MG+ER V ALRAS+NNP+RAVEYL GIPA +
Sbjct: 136 TQPSNNDG-FLTGAALNATVQNIMEMGFEREQVQRALRASYNNPERAVEYLFNGIPANI 193
>gi|45198876|ref|NP_985905.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|44984905|gb|AAS53729.1| AFR358Wp [Ashbya gossypii ATCC 10895]
gi|374109136|gb|AEY98042.1| FAFR358Wp [Ashbya gossypii FDAG1]
Length = 413
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 53/95 (55%), Gaps = 15/95 (15%)
Query: 2 IGAPAAATSTPSTPVSQAG-ATATATTPG-----NAEST---------LLMGDEYGRMVQ 46
+ P A+ P S+A T TTPG + EST + G + V+
Sbjct: 82 VSEPEPASEPSGGPQSEASTGLETVTTPGVSAAVDPESTGAAVGSGASFVTGSARSQTVE 141
Query: 47 NIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I++MGY+R+ V ALRA+FNNPDRAVEYL+TGIP
Sbjct: 142 RIMEMGYDRAQVEMALRAAFNNPDRAVEYLLTGIP 176
>gi|76155958|gb|AAX27211.2| SJCHGC03112 protein [Schistosoma japonicum]
Length = 155
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 9/84 (10%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNA-------ESTLLMGDEYGRMVQNIVDMGYER 55
G P + +P+ V ++ ATTP A +S+L++G+++ +VQ +V MG+E+
Sbjct: 46 GKPMPSEKSPNVDVIES--VNVATTPSTATNTLSFLKSSLVLGEDFESVVQELVSMGFEK 103
Query: 56 SAVTEALRASFNNPDRAVEYLITG 79
V +A+RA FNNPDRA EYL +G
Sbjct: 104 PLVIQAMRAGFNNPDRAFEYLSSG 127
>gi|402224231|gb|EJU04294.1| UV excision repair protein Rad23 [Dacryopinax sp. DJM-731 SS1]
Length = 411
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
+S G V+N+++MG+ER+ V AL+A++NNPDRAVEYL++GIP +V EE
Sbjct: 141 QSAFFTGAALQGAVENMMEMGFERAQVMRALKAAYNNPDRAVEYLMSGIPDHLVREE 197
>gi|346975858|gb|EGY19310.1| nucleotide excision repair protein RAD23 [Verticillium dahliae
VdLs.17]
Length = 394
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
AA STP TP ++ GA + ++ MG + +V N+ MG+ERS + ALRA+
Sbjct: 112 AAVPSTP-TPAARVGAGGDGAP---TDPSMAMGAQRAEVVANMEAMGFERSQIDAALRAA 167
Query: 66 FNNPDRAVEYLITGIP 81
F NPDRAVEYL+TGIP
Sbjct: 168 FYNPDRAVEYLLTGIP 183
>gi|164660784|ref|XP_001731515.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
gi|159105415|gb|EDP44301.1| hypothetical protein MGL_1698 [Malassezia globosa CBS 7966]
Length = 406
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAES-TLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
A++++ PSTP G T + + G+ ++ + L G E V +I++MG+ + V A+R
Sbjct: 134 ASSSNLPSTPAPSNGPTNASGSTGSLQTGSFLSGAELETAVSSIIEMGFSKEDVQRAMRM 193
Query: 65 SFNNPDRAVEYLITGIP 81
SFNNPDRAVEYL+ G+P
Sbjct: 194 SFNNPDRAVEYLMNGLP 210
>gi|328861399|gb|EGG10502.1| hypothetical protein MELLADRAFT_93497 [Melampsora larici-populina
98AG31]
Length = 416
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 10 STPST---PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVD-MGYERSAVTEALRAS 65
STP+T P + ++ A PG + L G + IV+ MG+ R V +A+RA+
Sbjct: 118 STPATTTEPQAAVDSSTPAVAPGTQDPGFLTGSGLQTTIDEIVNGMGFPREEVVKAMRAA 177
Query: 66 FNNPDRAVEYLITGIPAAV 84
FNNPDRAVEYL+TGIPA +
Sbjct: 178 FNNPDRAVEYLMTGIPAGL 196
>gi|291407417|ref|XP_002719904.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 488
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P + TP + AG ++ A A LL +MV IV MGYER V ALRA
Sbjct: 149 PPCPSPTPDDAI--AGPSSRAQPSEQAARALLTRPASEQMVAEIVSMGYEREQVLAALRA 206
Query: 65 SFNNPDRAVEYLITGIPAAVVGEEAPVAANEP 96
SFNNP RAVEYL+ G+P G+ A A EP
Sbjct: 207 SFNNPHRAVEYLLMGLP----GDRASAAEVEP 234
>gi|440902080|gb|ELR52923.1| UV excision repair protein RAD23-like protein A [Bos grunniens
mutus]
Length = 391
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 46/73 (63%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ + +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 142 SAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 201
Query: 66 FNNPDRAVEYLIT 78
+NNP RAVEYL+T
Sbjct: 202 YNNPHRAVEYLLT 214
>gi|116787088|gb|ABK24371.1| unknown [Picea sitchensis]
Length = 390
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTE 60
APA + S P T QA A G A S L+ G + +Q ++DMG ++R V
Sbjct: 124 APATSVSAPETTAVQANADPY----GEAASILVAGSNLEQTIQQMLDMGGGSWDRDTVVR 179
Query: 61 ALRASFNNPDRAVEYLITGIP 81
ALRA++NNP+RAVEYL +GIP
Sbjct: 180 ALRAAYNNPERAVEYLYSGIP 200
>gi|255543415|ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223547781|gb|EEF49273.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 359
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASF 66
S+ STP + T G A S L+ GD + +Q I+DMG +++ VT ALRA++
Sbjct: 101 SSNSTPAVEVQPPTQTDTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTRALRAAY 160
Query: 67 NNPDRAVEYLITGIP 81
NNP+RAV+YL +GIP
Sbjct: 161 NNPERAVDYLYSGIP 175
>gi|385306094|gb|EIF50024.1| rad23p [Dekkera bruxellensis AWRI1499]
Length = 421
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 35/50 (70%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
EST +G VQNI+ MG+ER V AL A+FNNPDRAVEYL+ GIP
Sbjct: 134 ESTFAIGRARQTAVQNIMGMGFEREQVERALTAAFNNPDRAVEYLLNGIP 183
>gi|409045113|gb|EKM54594.1| hypothetical protein PHACADRAFT_258558 [Phanerochaete carnosa
HHB-10118-sp]
Length = 415
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T + PVS +A A N E+ + G + VQN+++MG+ER ALRAS+NN
Sbjct: 130 TPAQAAPVSTPAQSARAI---NDENAFVTGADLQTAVQNMMEMGFEREQAMRALRASYNN 186
Query: 69 PDRAVEYLITGIPAAV 84
P+RAVEYL GIP+ +
Sbjct: 187 PERAVEYLFNGIPSHL 202
>gi|340522496|gb|EGR52729.1| hypothetical protein TRIREDRAFT_102581 [Trichoderma reesei QM6a]
Length = 341
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 38/52 (73%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
S L MG E + N+ MG+ER+ + A+RA+FNNPDRAVEYL+TGIP ++
Sbjct: 104 SGLAMGSERAEAIANMEAMGFERTQIEAAMRAAFNNPDRAVEYLLTGIPESI 155
>gi|291407421|ref|XP_002719934.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Oryctolagus cuniculus]
Length = 408
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 19 AGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
AG ++ A A LL +MV IV MGYER V ALRASFNNP RAVEYL+
Sbjct: 171 AGPSSRAQPSEQAARALLTRPASEQMVAEIVSMGYEREQVLAALRASFNNPHRAVEYLLM 230
Query: 79 GIPAAVVGEEAPVAANEP 96
G+P G+ A A EP
Sbjct: 231 GLP----GDRASAAEVEP 244
>gi|296816959|ref|XP_002848816.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
gi|238839269|gb|EEQ28931.1| nucleotide excision repair protein RAD23 [Arthroderma otae CBS
113480]
Length = 377
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A+ TP+TP GA + AT N S LLMG++ + + MG+ RS + A+RA++
Sbjct: 110 ASETPATPSPAGGAGSGATF--NDPSALLMGNQGQEAIAQMEAMGFSRSNIDRAMRAAYF 167
Query: 68 NPDRAVEYLITGIP 81
NPDRA+EYL+ GIP
Sbjct: 168 NPDRAIEYLLNGIP 181
>gi|156051332|ref|XP_001591627.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980]
gi|154704851|gb|EDO04590.1| hypothetical protein SS1G_07073 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 9 TSTPSTPVSQAGAT--ATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
T+ P+TP S AGA+ + TP N + L MG E + + MG+ERS + A+RA+F
Sbjct: 114 TAVPATP-SPAGASVPSVQATPSNETTGLAMGAERSAQIAEMEAMGFERSQIDLAMRAAF 172
Query: 67 NNPDRAVEYLITGIPAAVVGEE 88
N +RA+EYL+TGIP ++ E+
Sbjct: 173 FNSERAIEYLLTGIPENLLQEQ 194
>gi|84998362|ref|XP_953902.1| DNA repair protein (RAD23 ) [Theileria annulata]
gi|65304900|emb|CAI73225.1| DNA repair protein (RAD23 homologue), putative [Theileria annulata]
Length = 328
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P TP+ P S G + T N S +MG E + + I +MG+ER V A+ A
Sbjct: 102 PPTQDDTPNQPSS--GNVVSEQTYENVSSKFVMGSELEQSINRICEMGFERPLVERAMAA 159
Query: 65 SFNNPDRAVEYLITG-IPAA 83
+FNNPDRAVE+L TG IPA+
Sbjct: 160 AFNNPDRAVEFLSTGNIPAS 179
>gi|358398611|gb|EHK47962.1| hypothetical protein TRIATDRAFT_298203 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+ +P S L MG E + N+ MG+ER+ + A+RA+FNNPDRAVEYL+TGIP
Sbjct: 124 SVESPSGGVSGLAMGAERAEAIANMEAMGFERTQIEAAMRAAFNNPDRAVEYLLTGIP 181
>gi|365991864|ref|XP_003672760.1| hypothetical protein NDAI_0L00320 [Naumovozyma dairenensis CBS 421]
gi|410729747|ref|XP_003671052.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
gi|401779871|emb|CCD25809.2| hypothetical protein NDAI_0G00330 [Naumovozyma dairenensis CBS 421]
Length = 427
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+ G + V+ I++MGYER V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 164 FVTGTQRNETVERIMEMGYEREEVERALRAAFNNPDRAVEYLLMGIP 210
>gi|336371729|gb|EGO00069.1| hypothetical protein SERLA73DRAFT_167911 [Serpula lacrymans var.
lacrymans S7.3]
Length = 380
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
++ + G+ V+N+++MG+ER V ALRAS+NNPDRAVEYL GIPA + E
Sbjct: 135 NSFVTGEVLNTTVRNMMEMGFEREQVMRALRASYNNPDRAVEYLFNGIPAHLEAE 189
>gi|47206809|emb|CAG13273.1| unnamed protein product [Tetraodon nigroviridis]
Length = 366
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI-PAA------ 83
A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+T PAA
Sbjct: 154 AVSNLVTGPSYESMVNEIMLMGYEREQVVAALRASFNNPDRAVEYLLTAAGPAAEATPAS 213
Query: 84 -----VVGEEAPVAA----------NEPQGNNIKQFSSVKEIEIPNLMQ 117
G +P A N+PQ ++Q +P L+Q
Sbjct: 214 SAPAAPAGTGSPAGAEGVNPLSFLRNQPQFQQMRQLIQQNAALLPTLLQ 262
>gi|357621015|gb|EHJ73001.1| nuclear excision repair protein rad23 [Danaus plexippus]
Length = 323
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 34/42 (80%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++ VQ+I+DMGY R V +ALRASFNN +RAVEYLITGIP
Sbjct: 134 DFESTVQSIMDMGYNRQQVEQALRASFNNRERAVEYLITGIP 175
>gi|343428884|emb|CBQ72429.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Sporisorium reilianum SRZ2]
Length = 434
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A+ST + P A + + + L G +Q++++MG+ER V A+RA+FN
Sbjct: 131 ASSTTAAPTESTPAATESQSSSGTSGSFLTGGALESAMQSMMEMGFERDQVQRAMRAAFN 190
Query: 68 NPDRAVEYLITGIPAAVVGEEAPVAANEP 96
NPDRAVEYL+TGIP + P AA +P
Sbjct: 191 NPDRAVEYLMTGIPEHLAN---PPAAPQP 216
>gi|254583708|ref|XP_002497422.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
gi|238940315|emb|CAR28489.1| ZYRO0F05192p [Zygosaccharomyces rouxii]
Length = 384
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++G + V I++MGYER V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 FVVGQQRNETVDRIMEMGYERDQVERALRAAFNNPDRAVEYLLMGIP 180
>gi|156837209|ref|XP_001642636.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
gi|156113188|gb|EDO14778.1| hypothetical protein Kpol_370p6 [Vanderwaltozyma polyspora DSM
70294]
Length = 404
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++G + V+ I++MGYER V A+RA+FNNPDRAVEYL+ GIP
Sbjct: 150 FVVGSQRNEAVERIMEMGYERDEVNRAMRAAFNNPDRAVEYLLMGIP 196
>gi|125775113|ref|XP_001358808.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
gi|54638549|gb|EAL27951.1| GA10501 [Drosophila pseudoobscura pseudoobscura]
Length = 313
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+AAT T STP GA + AT GN S++ +E MVQ ++ MGYE V AL AS
Sbjct: 94 SAATGTGSTPSGDTGAESYATGGGNPTSSVAPNEE---MVQRLMGMGYEEMPVRAALSAS 150
Query: 66 FNNPDRAVEYLITGIPA-AVVGEEAPVAAN 94
FN+P+ A+EYLI IP+ A G +PV +
Sbjct: 151 FNHPELAIEYLIAQIPSEAASGTASPVCVS 180
>gi|297832888|ref|XP_002884326.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
gi|297330166|gb|EFH60585.1| hypothetical protein ARALYDRAFT_477488 [Arabidopsis lyrata subsp.
lyrata]
Length = 417
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 2 IGAPAAATSTPSTPV-SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSA 57
I P AT STP A A + G A S L G +Q I+DMG ++R
Sbjct: 145 IPEPVPATIPSSTPAPDSAPAGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRET 204
Query: 58 VTEALRASFNNPDRAVEYLITGIP 81
V ALRA+FNNP+RAVEYL TGIP
Sbjct: 205 VVRALRAAFNNPERAVEYLYTGIP 228
>gi|356575536|ref|XP_003555896.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 2
[Glycine max]
Length = 399
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G +Q I+DMG ++R V ALRA++NNP+RAVEYL TGIP
Sbjct: 158 GQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQA- 216
Query: 86 GEEAPVAANEP 96
EAP+ A P
Sbjct: 217 --EAPLVARAP 225
>gi|356575534|ref|XP_003555895.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 1
[Glycine max]
Length = 402
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G +Q I+DMG ++R V ALRA++NNP+RAVEYL TGIP
Sbjct: 158 GQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQA- 216
Query: 86 GEEAPVAANEP 96
EAP+ A P
Sbjct: 217 --EAPLVARAP 225
>gi|428673091|gb|EKX74004.1| uv excision repair protein rad23, putative [Babesia equi]
Length = 317
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
STPV Q + N S LL+G E V I +MG+ER+ V A+ A+FNNP+RA
Sbjct: 95 STPVQQEAPEKSEPVYDNPSSKLLIGQELQDNVNRICEMGFERAMVERAMAAAFNNPERA 154
Query: 73 VEYLITG 79
VE+L TG
Sbjct: 155 VEFLSTG 161
>gi|145334669|ref|NP_001078680.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|332006939|gb|AED94322.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 332
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIPA
Sbjct: 136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQ-- 193
Query: 86 GEEAPVA 92
E PVA
Sbjct: 194 AEIPPVA 200
>gi|334184023|ref|NP_001185439.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
gi|332198161|gb|AEE36282.1| putative DNA repair protein RAD23-1 [Arabidopsis thaliana]
Length = 395
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 3/62 (4%)
Query: 23 ATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITG 79
A T G A STL+ G +MVQ I++MG +++ VT ALRA++NNP+RAV+YL +G
Sbjct: 154 AQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSG 213
Query: 80 IP 81
IP
Sbjct: 214 IP 215
>gi|224127650|ref|XP_002329330.1| predicted protein [Populus trichocarpa]
gi|222870784|gb|EEF07915.1| predicted protein [Populus trichocarpa]
Length = 384
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 52/104 (50%), Gaps = 25/104 (24%)
Query: 3 GAPAAATSTPSTPVS------------QAGATATATTP----------GNAESTLLMGDE 40
G P+ AT+ P T VS Q +T+ A P G A S L+ G
Sbjct: 98 GGPSTATAAPPTLVSAQPTSSLPSNVTQPSSTSQAAVPAAAFSDADMYGQAASNLVAGSN 157
Query: 41 YGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
+Q I+DMG + R V ALRA+FNNP+RAVEYL +GIP
Sbjct: 158 LEATIQQILDMGGGSWNRETVVRALRAAFNNPERAVEYLYSGIP 201
>gi|357158333|ref|XP_003578094.1| PREDICTED: probable DNA repair protein RAD23-like isoform 1
[Brachypodium distachyon]
Length = 395
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 11 TPSTPVSQAGATATAT---TPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRA 64
TP+ S A A A +T T G A S L+ G +Q+I++MG ++R V ALRA
Sbjct: 131 TPTATASPASAVAVSTEAETYGQAASNLVAGGNLEATIQSILEMGGGTWDRDTVLRALRA 190
Query: 65 SFNNPDRAVEYLITGIP 81
+FNNP+RAVEYL +GIP
Sbjct: 191 AFNNPERAVEYLYSGIP 207
>gi|30409730|dbj|BAC76395.1| RAD23-like protein [Arabidopsis thaliana]
Length = 343
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPA 82
G A S L+ G VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIPA
Sbjct: 136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPA 192
>gi|356536322|ref|XP_003536688.1| PREDICTED: putative DNA repair protein RAD23-3-like [Glycine max]
Length = 408
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G +Q I+DMG ++R V ALRA++NNP+RAVEYL TGIP
Sbjct: 164 GQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQA- 222
Query: 86 GEEAPVAANEP 96
EAP+ A P
Sbjct: 223 --EAPLVAQVP 231
>gi|90078929|dbj|BAE89144.1| unnamed protein product [Macaca fascicularis]
Length = 217
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 1 MVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 38
>gi|302680567|ref|XP_003029965.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
gi|300103656|gb|EFI95062.1| hypothetical protein SCHCODRAFT_68753 [Schizophyllum commune H4-8]
Length = 383
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
S+ + G+ V N+ +MG+ R V ALRASFNNPDRAVEYL+ GIPA +
Sbjct: 133 SSFVTGNVLQETVNNMTEMGFPREQVLRALRASFNNPDRAVEYLMNGIPAHL 184
>gi|356575538|ref|XP_003555897.1| PREDICTED: putative DNA repair protein RAD23-3-like isoform 3
[Glycine max]
Length = 381
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G +Q I+DMG ++R V ALRA++NNP+RAVEYL TGIP
Sbjct: 137 GQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQA- 195
Query: 86 GEEAPVAANEP 96
EAP+ A P
Sbjct: 196 --EAPLVARAP 204
>gi|357158336|ref|XP_003578095.1| PREDICTED: probable DNA repair protein RAD23-like isoform 2
[Brachypodium distachyon]
Length = 370
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 11 TPSTPVSQAGATATAT---TPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRA 64
TP+ S A A A +T T G A S L+ G +Q+I++MG ++R V ALRA
Sbjct: 106 TPTATASPASAVAVSTEAETYGQAASNLVAGGNLEATIQSILEMGGGTWDRDTVLRALRA 165
Query: 65 SFNNPDRAVEYLITGIP 81
+FNNP+RAVEYL +GIP
Sbjct: 166 AFNNPERAVEYLYSGIP 182
>gi|114205486|gb|AAI11407.1| Rad23b protein [Rattus norvegicus]
Length = 225
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/38 (73%), Positives = 30/38 (78%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 3 MVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 40
>gi|449515726|ref|XP_004164899.1| PREDICTED: putative DNA repair protein RAD23-1-like, partial
[Cucumis sativus]
Length = 386
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 4 APAAATSTPSTPVSQA-GATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVT 59
APA ++ + +S A A T G A S L+ G+ + +Q I+DMG ++R VT
Sbjct: 121 APAQPAASRNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVT 180
Query: 60 EALRASFNNPDRAVEYLITGIPAAVVGEEAPVAA 93
ALRA++NNP+RAV+YL +GIP E A VAA
Sbjct: 181 RALRAAYNNPERAVDYLYSGIP-----ETAEVAA 209
>gi|14335004|gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPA 82
G A S L+ G VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIPA
Sbjct: 136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPA 192
>gi|15240922|ref|NP_198663.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
gi|55976502|sp|Q84L30.2|RD23D_ARATH RecName: Full=Putative DNA repair protein RAD23-4; AltName:
Full=RAD23-like protein 4; Short=AtRAD23-4
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis thaliana]
gi|19548081|gb|AAL87405.1| At5g38470/At5g38470 [Arabidopsis thaliana]
gi|21593157|gb|AAM65106.1| DNA repair protein RAD23 homolog [Arabidopsis thaliana]
gi|30409728|dbj|BAC76394.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735094|gb|ABG89117.1| Rad23-2 [synthetic construct]
gi|332006938|gb|AED94321.1| putative DNA repair protein RAD23-4 [Arabidopsis thaliana]
Length = 378
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPA 82
G A S L+ G VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIPA
Sbjct: 136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPA 192
>gi|242079575|ref|XP_002444556.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
gi|241940906|gb|EES14051.1| hypothetical protein SORBIDRAFT_07g023746 [Sorghum bicolor]
Length = 184
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 6/72 (8%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVG 86
A S L+ G+ +++Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V
Sbjct: 77 QAASNLVSGNNLEQIIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIP---VN 133
Query: 87 EEAPVAANEPQG 98
E P A P G
Sbjct: 134 VETPPVAGAPAG 145
>gi|171686384|ref|XP_001908133.1| hypothetical protein [Podospora anserina S mat+]
gi|170943153|emb|CAP68806.1| unnamed protein product [Podospora anserina S mat+]
Length = 383
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
N S L MG++ + + N+ MG+ERS + A+RA+F NP+RAVEYL+TGIP V
Sbjct: 132 NDSSALAMGEQRAQAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLTGIPENV 186
>gi|451846054|gb|EMD59365.1| hypothetical protein COCSADRAFT_185234 [Cochliobolus sativus
ND90Pr]
Length = 379
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S L MG E + N+ MG+ R+ + A+RA+F NPDRAVEYL+TGIP + + E+A
Sbjct: 130 NDPSALTMGGEREAAIANMESMGFARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 189
>gi|326528949|dbj|BAJ97496.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEA 61
P+A + TP+ V+ +G A A S L+ G + VQ I+DMG +ER V A
Sbjct: 135 PSAVSDTPAAAVTASG---DADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRA 191
Query: 62 LRASFNNPDRAVEYLITGIPAAV 84
LRA++NNP+RA++YL +GIP +V
Sbjct: 192 LRAAYNNPERAIDYLYSGIPESV 214
>gi|451994966|gb|EMD87435.1| hypothetical protein COCHEDRAFT_1206663 [Cochliobolus
heterostrophus C5]
Length = 379
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 40/60 (66%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S L MG E + N+ MG+ R+ + A+RA+F NPDRAVEYL+TGIP + + E+A
Sbjct: 130 NDPSALTMGGEREAAIANMESMGFARADIDRAMRAAFFNPDRAVEYLLTGIPESALQEQA 189
>gi|328771201|gb|EGF81241.1| hypothetical protein BATDEDRAFT_16317 [Batrachochytrium
dendrobatidis JAM81]
Length = 377
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 36/52 (69%)
Query: 41 YGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVA 92
Y V N+++MG+ R VT A+R +FNNPDRA EYL+TGIP +V E A A
Sbjct: 138 YENAVSNLMEMGFPRDQVTHAMRTAFNNPDRAAEYLMTGIPDSVAREFASTA 189
>gi|326501072|dbj|BAJ98767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 414
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEA 61
P+A + TP+ V+ +G A A S L+ G + VQ I+DMG +ER V A
Sbjct: 135 PSAVSDTPAAAVTASG---DADVYSQAASNLVSGGILEQTVQQILDMGGGTWERDMVVRA 191
Query: 62 LRASFNNPDRAVEYLITGIPAAV 84
LRA++NNP+RA++YL +GIP +V
Sbjct: 192 LRAAYNNPERAIDYLYSGIPESV 214
>gi|353237727|emb|CCA69693.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Piriformospora indica DSM 11827]
Length = 408
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T+T S P + +T A ++++ L G +Q ++DMG+ER V A+RASFNN
Sbjct: 117 TTTASNPQPASESTTAAAAAPGSDTSFLTGSALETAIQGLMDMGFERPQVERAMRASFNN 176
Query: 69 PDRAVEYLITGIPAAVV 85
PDRA +YL GIP ++
Sbjct: 177 PDRAADYLFNGIPPGLL 193
>gi|255712183|ref|XP_002552374.1| KLTH0C03410p [Lachancea thermotolerans]
gi|238933753|emb|CAR21936.1| KLTH0C03410p [Lachancea thermotolerans CBS 6340]
Length = 391
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
VQ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 145 VQRIMEMGYDREQVERALRAAFNNPDRAVEYLLMGIP 181
>gi|449459440|ref|XP_004147454.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 374
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 4 APAAATSTPSTPVSQA-GATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVT 59
APA ++ + +S A A T G A S L+ G+ + +Q I+DMG ++R VT
Sbjct: 109 APAQPAASRNVAISDVPTANAQIDTYGQAASNLVSGNNLEQTIQEIMDMGGGSWDRETVT 168
Query: 60 EALRASFNNPDRAVEYLITGIP 81
ALRA++NNP+RAV+YL +GIP
Sbjct: 169 RALRAAYNNPERAVDYLYSGIP 190
>gi|7715605|gb|AAF68123.1|AC010793_18 F20B17.8 [Arabidopsis thaliana]
Length = 367
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLIT 78
T T G A STL+ G +MVQ I++MG +++ VT ALRA++NNP+RAV+YL +
Sbjct: 127 TTGTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYS 186
Query: 79 GIP 81
GIP
Sbjct: 187 GIP 189
>gi|297805910|ref|XP_002870839.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
gi|297316675|gb|EFH47098.1| hypothetical protein ARALYDRAFT_494129 [Arabidopsis lyrata subsp.
lyrata]
Length = 377
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIPA
Sbjct: 136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPAQ-- 193
Query: 86 GEEAPVA 92
E PVA
Sbjct: 194 AEIPPVA 200
>gi|346324523|gb|EGX94120.1| UV excision repair protein (RadW), putative [Cordyceps militaris
CM01]
Length = 1066
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 50/90 (55%), Gaps = 17/90 (18%)
Query: 9 TSTPSTPVS--QAGA---TATATTPGNAEST------------LLMGDEYGRMVQNIVDM 51
TSTP+ P + Q+ A TA TP S L MG E + ++ M
Sbjct: 782 TSTPAVPAAPNQSSANQSTAPPVTPSPNRSADAAAPTGADAAGLTMGAERAAAITSMEAM 841
Query: 52 GYERSAVTEALRASFNNPDRAVEYLITGIP 81
G+ERS + A+RA+FNNPDRAVEYL+TGIP
Sbjct: 842 GFERSQIEAAMRAAFNNPDRAVEYLLTGIP 871
>gi|388856731|emb|CCF49691.1| related to RAD23-nucleotide excision repair protein (ubiquitin-like
protein) [Ustilago hordei]
Length = 424
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+S + T TT G + L G + ++++MG++R V A+RA+FNNPDRAVE
Sbjct: 118 PISDS--TEGQTTTGGDSGSFLTGGPLESAMSSMMEMGFQREQVQRAMRAAFNNPDRAVE 175
Query: 75 YLITGIP 81
YL+TGIP
Sbjct: 176 YLMTGIP 182
>gi|403418377|emb|CCM05077.1| predicted protein [Fibroporia radiculosa]
Length = 214
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 34/48 (70%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
N ++ L G+ +QN+++MG+ER V ALRASFNNPDRAVEYL
Sbjct: 148 NDSNSFLTGEALQSTIQNMMEMGFERDQVMRALRASFNNPDRAVEYLF 195
>gi|15232924|ref|NP_186903.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|55976503|sp|Q84L31.2|RD23C_ARATH RecName: Full=Putative DNA repair protein RAD23-3; AltName:
Full=RAD23-like protein 3; Short=AtRAD23-3
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis thaliana]
gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|21360453|gb|AAM47342.1| AT3g02540/F16B3_17 [Arabidopsis thaliana]
gi|30409724|dbj|BAC76392.1| RAD23-like protein [Arabidopsis thaliana]
gi|110735092|gb|ABG89116.1| Rad23-1 [synthetic construct]
gi|332640303|gb|AEE73824.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 419
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 2 IGAPAAATSTPSTPVSQAGATAT-ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSA 57
I P AT + STP + + G A S L G +Q I+DMG ++R
Sbjct: 147 IPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRET 206
Query: 58 VTEALRASFNNPDRAVEYLITGIP 81
V ALRA+FNNP+RAVEYL TGIP
Sbjct: 207 VVLALRAAFNNPERAVEYLYTGIP 230
>gi|225423953|ref|XP_002282352.1| PREDICTED: putative DNA repair protein RAD23-3 [Vitis vinifera]
gi|297737829|emb|CBI27030.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G+ + +Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 157 GQAASNLVAGNNFEEAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 212
>gi|224101717|ref|XP_002312393.1| predicted protein [Populus trichocarpa]
gi|222852213|gb|EEE89760.1| predicted protein [Populus trichocarpa]
Length = 333
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S+L+ G VQ I+DMG ++R V ALRA++NNP+RA+EYL +GIP
Sbjct: 93 GQAASSLVAGSNLEVAVQQILDMGGGTWDRDTVVRALRAAYNNPERAIEYLYSGIPEQA- 151
Query: 86 GEEAPVAANEPQG 98
EAP A+ P G
Sbjct: 152 --EAPPVAHMPLG 162
>gi|30409726|dbj|BAC76393.1| RAD23-like protein [Arabidopsis thaliana]
Length = 337
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 2 IGAPAAATSTPSTPVSQAGATAT-ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSA 57
I P AT + STP + + G A S L G +Q I+DMG ++R
Sbjct: 65 IPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRET 124
Query: 58 VTEALRASFNNPDRAVEYLITGIP 81
V ALRA+FNNP+RAVEYL TGIP
Sbjct: 125 VVLALRAAFNNPERAVEYLYTGIP 148
>gi|356521682|ref|XP_003529482.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 3
[Glycine max]
Length = 348
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 13/87 (14%)
Query: 10 STPSTPVSQAGAT----------ATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERS 56
S P+T VS + +T +A T G A S L+ G + +Q I+DMG ++R
Sbjct: 92 SNPATTVSMSNSTPPSDPPVQTHVSADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRD 151
Query: 57 AVTEALRASFNNPDRAVEYLITGIPAA 83
V+ ALRA++NNP+RA++YL +GIP A
Sbjct: 152 TVSRALRAAYNNPERAIDYLYSGIPEA 178
>gi|1914685|emb|CAA72742.1| RAD23 protein, isoform II [Daucus carota]
Length = 379
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 58/96 (60%), Gaps = 8/96 (8%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRAS 65
T+ P P+S A A + T G A S ++ G + +Q+I+DMG ++ + V+ ALRA+
Sbjct: 120 TTVPEAPLSPA--FAPSDTYGEAASNVVAGSNLEQTIQHIMDMGGGMWDTNMVSRALRAA 177
Query: 66 FNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNI 101
+NNP+RAV+YL +GIP EA V + QG+ I
Sbjct: 178 YNNPERAVDYLYSGIPEMA---EAAVPVSHFQGDQI 210
>gi|389609121|dbj|BAM18172.1| UV excision repair protein rad23 [Papilio xuthus]
Length = 254
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++ VQ+I+DMGY R V +ALRASF+N +RAVEYLITGIP
Sbjct: 65 DFESTVQSIMDMGYNRQQVEQALRASFSNRERAVEYLITGIP 106
>gi|389611285|dbj|BAM19254.1| UV excision repair protein rad23 [Papilio polytes]
Length = 326
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 34/42 (80%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++ VQ+I+DMGY R V +ALRASF+N +RAVEYLITGIP
Sbjct: 137 DFESTVQSIMDMGYNRQQVEQALRASFSNRERAVEYLITGIP 178
>gi|168020994|ref|XP_001763027.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685839|gb|EDQ72232.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G+ VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIP +
Sbjct: 130 GQAASNLVAGNVLETTVQQIMDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPES-- 187
Query: 86 GEEAPVAANEP 96
E PV P
Sbjct: 188 AEMRPVGGRSP 198
>gi|452846190|gb|EME48123.1| hypothetical protein DOTSEDRAFT_69906 [Dothistroma septosporum
NZE10]
Length = 402
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S L +G++ + + MG+ R + A+RA+F NPDRAVEYL+ GIPA+ EE
Sbjct: 132 NDPSALALGEQRTAAIAGMEAMGFARDQIDRAMRAAFFNPDRAVEYLLNGIPASAQQEER 191
Query: 90 PVAAN 94
P AA+
Sbjct: 192 PAAAS 196
>gi|255551362|ref|XP_002516727.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223544100|gb|EEF45625.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 381
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 4 APAAATSTP-----STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
APA P STPV ++ T G A S L+ G VQ I+DMG ++R
Sbjct: 114 APAVTAELPQSAAESTPVVNPVSSETDIY-GQAASNLVAGSNLEATVQQILDMGGGSWDR 172
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
V ALRA+FNNP+RAVEYL +GIP
Sbjct: 173 ETVARALRAAFNNPERAVEYLYSGIP 198
>gi|449501601|ref|XP_004161413.1| PREDICTED: putative DNA repair protein RAD23-1-like [Cucumis
sativus]
Length = 401
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 14/92 (15%)
Query: 4 APAAATSTPSTPVSQAGATATAT-----------TPGNAESTLLMGDEYGRMVQNIVDMG 52
AP A T P+ S A T+T T G A S L+ G+ + VQ ++DMG
Sbjct: 126 APQAPTQAPTQAPSSAPKNTTSTSERVTDNVQTDTYGQAASNLVAGNNLEQTVQQLMDMG 185
Query: 53 ---YERSAVTEALRASFNNPDRAVEYLITGIP 81
++R V ALRA++NNP+RAV+YL +GIP
Sbjct: 186 GGNWDRETVVRALRAAYNNPERAVDYLYSGIP 217
>gi|291407419|ref|XP_002719906.1| PREDICTED: RAD23B protein-like [Oryctolagus cuniculus]
Length = 527
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 4/54 (7%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEP 96
+MV IV MGYER V ALRASFNNP RAVEYL+ G+P G+ A A EP
Sbjct: 313 QMVAEIVSMGYEREQVLAALRASFNNPHRAVEYLLMGLP----GDRASAAEVEP 362
>gi|145351567|ref|XP_001420144.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580377|gb|ABO98437.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 36/50 (72%)
Query: 32 ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+S L+ G E V I+ MG+ER V A+RA+FNNPDRAVEYL+TGIP
Sbjct: 128 DSGLVSGAELEAAVTQIMTMGFEREQVMNAMRAAFNNPDRAVEYLLTGIP 177
>gi|356521678|ref|XP_003529480.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 363
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 10/80 (12%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALR 63
++T P+T VS A T G A S L+ G + +Q I+DMG ++R V+ ALR
Sbjct: 121 SSTDAPTTNVS-------ADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALR 173
Query: 64 ASFNNPDRAVEYLITGIPAA 83
A++NNP+RA++YL +GIP A
Sbjct: 174 AAYNNPERAIDYLYSGIPEA 193
>gi|224111696|ref|XP_002315945.1| predicted protein [Populus trichocarpa]
gi|222864985|gb|EEF02116.1| predicted protein [Populus trichocarpa]
Length = 378
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G+ VQ I+DMG ++R V ALRA++NNP+RAVEYL TGIP
Sbjct: 136 GQAASNLVAGNNLEGAVQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQA- 194
Query: 86 GEEAPVAANEP 96
EAP A P
Sbjct: 195 --EAPPVAQVP 203
>gi|255641364|gb|ACU20959.1| unknown [Glycine max]
Length = 363
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 10/80 (12%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALR 63
++T P+T VS A T G A S L+ G + +Q I+DMG ++R V+ ALR
Sbjct: 121 SSTDAPTTNVS-------ADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALR 173
Query: 64 ASFNNPDRAVEYLITGIPAA 83
A++NNP+RA++YL +GIP A
Sbjct: 174 AAYNNPERAIDYLYSGIPEA 193
>gi|42572233|ref|NP_974211.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
gi|332640304|gb|AEE73825.1| putative DNA repair protein RAD23-3 [Arabidopsis thaliana]
Length = 299
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 2 IGAPAAATSTPSTPVSQAGATAT-ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSA 57
I P AT + STP + + G A S L G +Q I+DMG ++R
Sbjct: 147 IPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRET 206
Query: 58 VTEALRASFNNPDRAVEYLITGIP 81
V ALRA+FNNP+RAVEYL TGIP
Sbjct: 207 VVLALRAAFNNPERAVEYLYTGIP 230
>gi|358249346|ref|NP_001240038.1| uncharacterized protein LOC100819019 [Glycine max]
gi|255647960|gb|ACU24437.1| unknown [Glycine max]
Length = 363
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 10/80 (12%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALR 63
++T P+T VS A T G A S L+ G + +Q I+DMG ++R V+ ALR
Sbjct: 121 SSTDAPTTNVS-------ADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALR 173
Query: 64 ASFNNPDRAVEYLITGIPAA 83
A++NNP+RA++YL +GIP A
Sbjct: 174 AAYNNPERAIDYLYSGIPEA 193
>gi|224073098|ref|XP_002303970.1| predicted protein [Populus trichocarpa]
gi|222841402|gb|EEE78949.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 19 AGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEY 75
A A A + T G A S L+ G + +Q I+DMG +++ VT ALRA++NNP+RAV+Y
Sbjct: 108 AQAFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTRALRAAYNNPERAVDY 167
Query: 76 LITGIP 81
L +GIP
Sbjct: 168 LYSGIP 173
>gi|356521680|ref|XP_003529481.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
[Glycine max]
Length = 343
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 10/80 (12%)
Query: 7 AATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALR 63
++T P+T VS A T G A S L+ G + +Q I+DMG ++R V+ ALR
Sbjct: 121 SSTDAPTTNVS-------ADTYGLAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALR 173
Query: 64 ASFNNPDRAVEYLITGIPAA 83
A++NNP+RA++YL +GIP A
Sbjct: 174 AAYNNPERAIDYLYSGIPEA 193
>gi|440633766|gb|ELR03685.1| UV excision repair protein Rad23 [Geomyces destructans 20631-21]
Length = 397
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 9 TSTPSTP------VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
T PSTP VS A A A N S L +G + V N+ MG+ER+++ A+
Sbjct: 112 TGIPSTPSPAGAGVSATPAPAPAQPQFNDPSALTIGAQRAEAVANLESMGFERASIDAAM 171
Query: 63 RASFNNPDRAVEYLITGIPAAVVGEE 88
RA+F NPDRAVEYL+ GIP + E+
Sbjct: 172 RAAFFNPDRAVEYLLNGIPEDLQREQ 197
>gi|156096789|ref|XP_001614428.1| DNA repair protein RAD23 [Plasmodium vivax Sal-1]
gi|148803302|gb|EDL44701.1| DNA repair protein RAD23, putative [Plasmodium vivax]
Length = 406
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
Query: 10 STPSTPV----SQAGATATATTPG-------NAESTLLMGDEYGRMVQNIVDMGYERSAV 58
S TP+ Q A TA G NAES L+ G++ + NI MG+ER AV
Sbjct: 96 SKEKTPLPANDDQKNAAPTAAEEGGQSKNLNNAESALVTGEKLKETIDNICAMGFEREAV 155
Query: 59 TEALRASFNNPDRAVEYLITGIP 81
+A+ +FNNP+RA++YL G P
Sbjct: 156 RKAMMVAFNNPNRAIDYLTNGFP 178
>gi|402588417|gb|EJW82350.1| UV excision repair protein Rad23 [Wuchereria bancrofti]
Length = 190
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 2 IGAPAAATSTPSTPVSQAGATATA----------TTPGNAESTLLMGDEYGRMVQNIVDM 51
IGAP +T PS AGA AT +TP N + + E Q IV M
Sbjct: 80 IGAPVESTPQPSNLQIPAGAQATTAPVSVADSGPSTPQNPDG---LTSEQEETAQAIVAM 136
Query: 52 GYERSAVTEALRASFNNPDRAVEYLITGIP 81
GY R V ALRASF N DRAVEYL +GIP
Sbjct: 137 GYPRDKVIRALRASFFNGDRAVEYLCSGIP 166
>gi|71033501|ref|XP_766392.1| DNA repair protein Rad23 [Theileria parva strain Muguga]
gi|68353349|gb|EAN34109.1| DNA repair protein rad23, putative [Theileria parva]
Length = 326
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P+ ++P P S G + T S L+MG E + + I +MG+ER V A+ A
Sbjct: 102 PSPLDNSPHQPSS--GHNVSQQTYETVSSKLVMGSELEQSINRICEMGFERPLVERAMAA 159
Query: 65 SFNNPDRAVEYLITG-IPAA 83
+FNNPDRAVE+L TG IP +
Sbjct: 160 AFNNPDRAVEFLSTGNIPVS 179
>gi|388499022|gb|AFK37577.1| unknown [Lotus japonicus]
Length = 376
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRA 64
A+++ +PV A ++ G A S L+ G VQ I++MG ++R V ALRA
Sbjct: 122 ASNSEQSPVITPPTAAVSSVYGQAASNLIAGSNVDPTVQQILEMGGGSWDRDTVIRALRA 181
Query: 65 SFNNPDRAVEYLITGIP 81
++NNP+RAVEYL +GIP
Sbjct: 182 AYNNPERAVEYLYSGIP 198
>gi|240273069|gb|EER36592.1| pre-mRNA-splicing factor cwc24 [Ajellomyces capsulatus H143]
Length = 826
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T+TPS A +T N S LLMG + ++V + MG+ RS + A+RA++ N
Sbjct: 555 TATPSPAAPVVAPVAGGSTTFNDPSALLMGPQGEQVVAQMESMGFPRSDIDRAMRAAYFN 614
Query: 69 PDRAVEYLITGIPAAVVGEE 88
PDRA+EYL+ GIP E
Sbjct: 615 PDRAIEYLLNGIPETTQAEH 634
>gi|225452019|ref|XP_002283661.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 2 [Vitis
vinifera]
Length = 361
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G+ +Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 142 GQAASNLVAGNNLEVTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA- 200
Query: 86 GEEAPVAANEP 96
E P AA P
Sbjct: 201 --EGPPAARPP 209
>gi|225452017|ref|XP_002283656.1| PREDICTED: putative DNA repair protein RAD23-3 isoform 1 [Vitis
vinifera]
gi|296087286|emb|CBI33660.3| unnamed protein product [Vitis vinifera]
Length = 381
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G+ +Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 142 GQAASNLVAGNNLEVTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQA- 200
Query: 86 GEEAPVAANEP 96
E P AA P
Sbjct: 201 --EGPPAARPP 209
>gi|77999269|gb|ABB16981.1| unknown [Solanum tuberosum]
Length = 382
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G VQ I+DMG +ER V ALRA++NNP+RA+EYL +GIP
Sbjct: 147 GQAASNLVAGSTLETTVQQILDMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIP 202
>gi|242060736|ref|XP_002451657.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
gi|241931488|gb|EES04633.1| hypothetical protein SORBIDRAFT_04g005370 [Sorghum bicolor]
Length = 369
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 2 IGAPAAATSTPSTPVSQAG-----ATATATTPGNAESTLLMGDEYGRMVQNIVDMG---Y 53
+ AP A P P + + A A T NA S+LL G M+ +++MG +
Sbjct: 102 LDAPQQAPQPPVAPTTTSQPEGLPAQAPPNTYDNAASSLLSGSNVDTMINQLMEMGGGSW 161
Query: 54 ERSAVTEALRASFNNPDRAVEYLITGIP 81
+R V ALRA++NNP+RAVEYL +GIP
Sbjct: 162 DRDKVQRALRAAYNNPERAVEYLYSGIP 189
>gi|77745475|gb|ABB02636.1| RAD23-like [Solanum tuberosum]
Length = 384
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G VQ I+DMG +ER V ALRA++NNP+RA+EYL +GIP
Sbjct: 149 GQAASNLVAGSTLETTVQQILDMGGGSWERDTVVRALRAAYNNPERAIEYLYSGIP 204
>gi|302417214|ref|XP_003006438.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
gi|261354040|gb|EEY16468.1| nucleotide excision repair protein RAD23 [Verticillium albo-atrum
VaMs.102]
Length = 394
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 34 TLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++ MG + +V N+ MG+ERS + ALRA+F NPDRAVEYL+TGIP
Sbjct: 136 SMAMGAQRAEVVANMEAMGFERSQIDAALRAAFYNPDRAVEYLLTGIP 183
>gi|429853552|gb|ELA28621.1| nucleotide excision repair protein rad23 [Colletotrichum
gloeosporioides Nara gc5]
Length = 354
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P S G A + P ++ MG + ++ N+ MG+ERS + A+RA+F NPDRAVE
Sbjct: 123 PRSTGGGDAASNDP-----SMAMGAQRQEVIANMEAMGFERSQIDAAMRAAFYNPDRAVE 177
Query: 75 YLITGIPAAV 84
YL+ GIP V
Sbjct: 178 YLLNGIPEGV 187
>gi|340374755|ref|XP_003385903.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 409
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 58/111 (52%), Gaps = 23/111 (20%)
Query: 5 PAAATSTPSTPVSQAGATATATTPG------------------NAESTLLMGDEYGRMVQ 46
P+++ + P+T + +G T T +T G A STL+ G +Y R V
Sbjct: 107 PSSSATAPTTTSAPSGTTGTESTDGGAGGGQTSSTASSSSEFDQALSTLVTGTDYERTVN 166
Query: 47 NIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
++V MG+ R+ V AL+AS+NNP RA+EYL P + EEA EPQ
Sbjct: 167 DMVGMGFMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEA-----EPQ 212
>gi|223945395|gb|ACN26781.1| unknown [Zea mays]
Length = 294
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
A S L+ G+ + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V E
Sbjct: 150 AASNLVSGNNLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV--E 207
Query: 88 EAPVA 92
PVA
Sbjct: 208 AQPVA 212
>gi|380094252|emb|CCC08469.1| putative RAD23 protein [Sordaria macrospora k-hell]
Length = 423
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
L MG++ + N+ MG+ERS + A+RA++NNP+RAVEYL+ GIPA
Sbjct: 173 LAMGEQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPA 220
>gi|413954952|gb|AFW87601.1| hypothetical protein ZEAMMB73_681598 [Zea mays]
Length = 399
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
A S L+ G+ + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V E
Sbjct: 150 AASNLVSGNNLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV--E 207
Query: 88 EAPVA 92
PVA
Sbjct: 208 AQPVA 212
>gi|356550681|ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
[Glycine max]
Length = 367
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAA 83
G A S L+ G + +Q ++DMG ++R VT ALRA++NNP+RAV+YL +GIP A
Sbjct: 132 GQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAVDYLYSGIPVA 189
>gi|170590706|ref|XP_001900112.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
gi|158592262|gb|EDP30862.1| UV excision repair protein Rad23 containing protein [Brugia malayi]
Length = 354
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 45/90 (50%), Gaps = 13/90 (14%)
Query: 2 IGAPAAATSTPSTPVSQAGATATA----------TTPGNAESTLLMGDEYGRMVQNIVDM 51
IGAP +T PS AGA T +TP N + + E Q IV M
Sbjct: 102 IGAPVESTPQPSNLQIPAGAQVTTAPVSVADSGPSTPQNPDD---LTPEQEETAQAIVAM 158
Query: 52 GYERSAVTEALRASFNNPDRAVEYLITGIP 81
GY R V ALRASF N DRAVEYL +GIP
Sbjct: 159 GYPRDKVIRALRASFFNGDRAVEYLCSGIP 188
>gi|398407563|ref|XP_003855247.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
gi|339475131|gb|EGP90223.1| hypothetical protein MYCGRDRAFT_103502 [Zymoseptoria tritici
IPO323]
Length = 394
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%)
Query: 27 TPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVG 86
T N S L +G++ + N+ MG+ R + A+RA+F NPDRAVEYL+ GIPA+
Sbjct: 129 TSWNDPSALALGEQRSAAIANMESMGFPRDQIDLAMRAAFFNPDRAVEYLLNGIPASAQQ 188
Query: 87 EE 88
EE
Sbjct: 189 EE 190
>gi|226500270|ref|NP_001142065.1| uncharacterized protein LOC100274222 [Zea mays]
gi|194706976|gb|ACF87572.1| unknown [Zea mays]
gi|413954953|gb|AFW87602.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
A S L+ G+ + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V E
Sbjct: 150 AASNLVSGNNLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV--E 207
Query: 88 EAPVA 92
PVA
Sbjct: 208 AQPVA 212
>gi|449017046|dbj|BAM80448.1| nucleotide excision repair protein yeast rad23/ human HHR23A
homolog [Cyanidioschyzon merolae strain 10D]
Length = 430
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+ AT S +SQ TT G A S L +GDEY + + DMG++ ++ A+RA+
Sbjct: 139 SGATPAESGALSQTPQVEGTTTSGIASSGLAVGDEYSLYMNRMRDMGFDDGSIERAMRAA 198
Query: 66 FNNPDRAVEYLITGIPA 82
NP+RA+EYL G PA
Sbjct: 199 HYNPERAIEYLCNGFPA 215
>gi|357124588|ref|XP_003563980.1| PREDICTED: putative DNA repair protein RAD23-3-like [Brachypodium
distachyon]
Length = 413
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEA 61
P A + P+ V+ +G A A S L+ G + VQ+I+DMG +ER V A
Sbjct: 135 PPAGSDIPAAAVTASG---DADVYSQAASNLVSGGSLEQTVQHILDMGGGTWERDMVVRA 191
Query: 62 LRASFNNPDRAVEYLITGIP 81
LRA++NNP+RA++YL +GIP
Sbjct: 192 LRAAYNNPERAIDYLYSGIP 211
>gi|401396253|ref|XP_003879788.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
gi|325114195|emb|CBZ49753.1| hypothetical protein NCLIV_002400 [Neospora caninum Liverpool]
Length = 370
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G A T AES L G + + ++V MG+ R +A+RA+FNNPDRAVEYL+ G
Sbjct: 140 GEAGEALTRTAAESALFTGPQLEETLTHLVAMGFPRDQAEQAMRAAFNNPDRAVEYLMNG 199
Query: 80 IPAAV 84
+P V
Sbjct: 200 MPPEV 204
>gi|302762537|ref|XP_002964690.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
gi|300166923|gb|EFJ33528.1| hypothetical protein SELMODRAFT_82644 [Selaginella moellendorffii]
Length = 385
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 23 ATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITG 79
AT+ G A S L+ G + +Q +VDMG ++R + ALRA++NNP+RAVEYL +G
Sbjct: 133 ATSDVYGQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCVRALRAAYNNPERAVEYLYSG 192
Query: 80 IP 81
IP
Sbjct: 193 IP 194
>gi|195636354|gb|ACG37645.1| DNA repair protein RAD23 [Zea mays]
Length = 405
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
A S L+ G+ + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V E
Sbjct: 150 AASNLVSGNSLEQTIQQILDMGGGTWERDTVVRALRAAYNNPERAIDYLYSGIPENV--E 207
Query: 88 EAPVA 92
PVA
Sbjct: 208 AQPVA 212
>gi|367027912|ref|XP_003663240.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
gi|347010509|gb|AEO57995.1| hypothetical protein MYCTH_80581 [Myceliophthora thermophila ATCC
42464]
Length = 377
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
+++ A AT T N L MG++ + N+ MG+ERS + A+RA+F NPDRAVEYL
Sbjct: 125 NRSAAPATLATDPN---QLAMGEQRAEAIANMEAMGFERSQIDAAMRAAFFNPDRAVEYL 181
Query: 77 ITGIP 81
+ GIP
Sbjct: 182 LNGIP 186
>gi|90657662|gb|ABD96960.1| hypothetical protein [Cleome spinosa]
Length = 435
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G ++Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 193 GQAASNLVAGSNLEAIIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 248
>gi|358346471|ref|XP_003637291.1| RAD23 protein [Medicago truncatula]
gi|355503226|gb|AES84429.1| RAD23 protein [Medicago truncatula]
Length = 366
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNP 69
++P A T T G A S L+ G + +Q ++DMG ++R V ALRA+FNNP
Sbjct: 116 ASPAVLAPTNVTTDTYGQAASNLVAGSNLEQTIQQLIDMGGGSWDRDTVNRALRAAFNNP 175
Query: 70 DRAVEYLITGI 80
+RAV+YL +GI
Sbjct: 176 ERAVDYLYSGI 186
>gi|281207510|gb|EFA81693.1| repC-binding protein A [Polysphondylium pallidum PN500]
Length = 220
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPAA 83
G EY +V+ I DMG+ R +T ALRAS+NNP+RAVE L+TG +PAA
Sbjct: 150 GPEYELIVKQIEDMGFSRDDITRALRASYNNPERAVELLLTGSVPAA 196
>gi|259487698|tpe|CBF86570.1| TPA: UV excision repair protein (RadW), putative (AFU_orthologue;
AFUA_5G06040) [Aspergillus nidulans FGSC A4]
Length = 369
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
N S LL G + ++ ++ MG+ER + A+RA+F NPDRA+EYL+ GIP + E+
Sbjct: 135 NDPSALLTGSQSEEVINQMMSMGFEREQINRAMRAAFFNPDRAIEYLLNGIPENIQQEQ 193
>gi|426387417|ref|XP_004060165.1| PREDICTED: UV excision repair protein RAD23 homolog A isoform 3
[Gorilla gorilla gorilla]
gi|194375626|dbj|BAG56758.1| unnamed protein product [Homo sapiens]
Length = 198
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 1 MLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 40
>gi|159475896|ref|XP_001696050.1| hypothetical protein CHLREDRAFT_80907 [Chlamydomonas reinhardtii]
gi|158275221|gb|EDP00999.1| predicted protein [Chlamydomonas reinhardtii]
Length = 370
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 35/51 (68%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
+A S LL G + NI +MG+ R V A+RA+FNNPDRAVEYL+TGI
Sbjct: 156 SAASGLLAGSALETAIANICEMGFPREEVVRAMRAAFNNPDRAVEYLMTGI 206
>gi|348690401|gb|EGZ30215.1| hypothetical protein PHYSODRAFT_553293 [Phytophthora sojae]
Length = 450
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
L+ G++ VQ +VDMG+ V ALRA+FNNP+RAVEYL+ GIP
Sbjct: 152 LVAGEQMSAAVQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMNGIP 198
>gi|301118881|ref|XP_002907168.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
gi|262105680|gb|EEY63732.1| UV excision repair protein RAD23 [Phytophthora infestans T30-4]
Length = 449
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
VQ +VDMG+ V ALRA+FNNP+RAVEYL+TGIP
Sbjct: 156 VQQLVDMGFPEDQVRSALRAAFNNPERAVEYLMTGIP 192
>gi|196008299|ref|XP_002114015.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
gi|190583034|gb|EDV23105.1| hypothetical protein TRIADDRAFT_58050 [Trichoplax adhaerens]
Length = 387
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 32/43 (74%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
++V IV MG+ R V ALRASFNNP RAVEYL TGIPA V+
Sbjct: 160 QIVSEIVSMGFPRDQVLLALRASFNNPHRAVEYLTTGIPANVL 202
>gi|449300177|gb|EMC96189.1| hypothetical protein BAUCODRAFT_33528 [Baudoinia compniacensis UAMH
10762]
Length = 392
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S L MG++ V N+ MG+ R + A+RA+F NPDRAVEYL+ GIPA+ E+
Sbjct: 130 NDPSALAMGEQRQAAVANMEAMGFPRDQIDRAMRAAFFNPDRAVEYLLNGIPAS--AEQE 187
Query: 90 PVAANEPQ 97
AA PQ
Sbjct: 188 QRAAATPQ 195
>gi|350634058|gb|EHA22422.1| hypothetical protein ASPNIDRAFT_204514 [Aspergillus niger ATCC
1015]
Length = 369
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 12 PSTPVSQAGATATAT-TPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPD 70
PSTP A T+ A + N S LL G + +V + MG+ RS V A+RA+F NPD
Sbjct: 115 PSTPSPAAAGTSQAQGSAFNDPSALLSGTQSEAVVAQMEAMGFARSDVNRAMRAAFFNPD 174
Query: 71 RAVEYLITGIP 81
RA+EYL+ GIP
Sbjct: 175 RAIEYLLNGIP 185
>gi|118486403|gb|ABK95041.1| unknown [Populus trichocarpa]
Length = 375
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 21 ATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLI 77
A A + T G A S L+ G + +Q I+D+G +++ VT ALRA++NNP+RAV+YL
Sbjct: 127 ANAQSDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLY 186
Query: 78 TGIP 81
+GIP
Sbjct: 187 SGIP 190
>gi|302834487|ref|XP_002948806.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
gi|300265997|gb|EFJ50186.1| hypothetical protein VOLCADRAFT_104016 [Volvox carteri f.
nagariensis]
Length = 366
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
A S LL G + NI +MG+ R V A+RA+FNNPDRAVEYL+TGI
Sbjct: 116 AASGLLAGSALETAIANICEMGFAREEVIRAMRAAFNNPDRAVEYLMTGI 165
>gi|320166179|gb|EFW43078.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 331
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
+ L++ ++ R++ +++ G+ER V ALRA+FNNPDRA EYL GIP V
Sbjct: 78 NALVVDEDQERVILQLMEFGFERDQVVRALRAAFNNPDRAAEYLFNGIPRHV 129
>gi|406866963|gb|EKD20002.1| nucleotide excision repair protein RAD23 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 435
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 25 ATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
++TPG A S L MG + + + +MG+ER+ + A+RA+F N +RA+EYLI GIP +
Sbjct: 178 SSTPGGATSGLSMGTDRAAQIAQMENMGFERTQIDAAMRAAFYNSERAIEYLINGIPENL 237
Query: 85 VGEE 88
E+
Sbjct: 238 QQEQ 241
>gi|358248820|ref|NP_001240201.1| uncharacterized protein LOC100809066 [Glycine max]
gi|255644546|gb|ACU22776.1| unknown [Glycine max]
Length = 392
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRA 72
+S A + G A S L+ G +Q I+DMG ++R V ALRA++NNP+RA
Sbjct: 136 ISSGSAVPESDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERA 195
Query: 73 VEYLITGIP 81
VEYL +GIP
Sbjct: 196 VEYLYSGIP 204
>gi|258571718|ref|XP_002544662.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
gi|237904932|gb|EEP79333.1| UV excision repair protein Rad23 [Uncinocarpus reesii 1704]
Length = 371
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N STLLMG + VQ + MG+ R+ + A+RA+F +PDRA+EYL+ GIP E
Sbjct: 157 NNPSTLLMGSQSEAAVQEMEAMGFPRADIDRAMRAAFFHPDRAIEYLLNGIPDT---PEQ 213
Query: 90 PVAANEP 96
P A +P
Sbjct: 214 PAAREQP 220
>gi|378730563|gb|EHY57022.1| UV excision repair protein Rad23 [Exophiala dermatitidis
NIH/UT8656]
Length = 405
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 12 PSTPVSQAGATATATTPG------NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
PSTP ATA +T N S LMG+ ++ + MG+ R + ALRA+
Sbjct: 113 PSTPTPAQSATAAPSTDTTGAGGFNDPSAFLMGNRNESTIREMESMGFGRPEIERALRAA 172
Query: 66 FNNPDRAVEYLITGIPAAVVGEE 88
+ NPDRA+EYL++GIP + ++
Sbjct: 173 YFNPDRAIEYLLSGIPENIQAQQ 195
>gi|169597111|ref|XP_001791979.1| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
gi|160707447|gb|EAT90986.2| hypothetical protein SNOG_01337 [Phaeosphaeria nodorum SN15]
Length = 386
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
S L MG+E V N+ MG+ R+ + A+RA+F NPDRAVEYL+TGIP
Sbjct: 112 SALTMGNEREAAVANMESMGFARADIDAAMRAAFFNPDRAVEYLLTGIP 160
>gi|330912967|ref|XP_003296143.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
gi|311331971|gb|EFQ95765.1| hypothetical protein PTT_04968 [Pyrenophora teres f. teres 0-1]
Length = 384
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S L MG E + N+ MG+ R+ + A+RA+F NPDRAVEYL+TGIP
Sbjct: 133 NDPSALTMGGEREAAIANMESMGFARADIDRAMRAAFFNPDRAVEYLLTGIP 184
>gi|189195060|ref|XP_001933868.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187979747|gb|EDU46373.1| DNA repair protein RAD23-like protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S L MG E + N+ MG+ R+ + A+RA+F NPDRAVEYL+TGIP
Sbjct: 131 NDPSALTMGGEREAAIANMESMGFARADIDRAMRAAFFNPDRAVEYLLTGIP 182
>gi|393911377|gb|EFO15597.2| UV excision repair protein Rad23 [Loa loa]
Length = 337
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
PAAA T TP A+ T +P +++ + E Q IV MGY R V ALRA
Sbjct: 97 PAAAQVTTVTP-----ASVTDNSPAAPQNSDGLTPEQEETAQAIVAMGYSRDKVIRALRA 151
Query: 65 SFNNPDRAVEYLITGIP 81
SF N DRAVEYL +GIP
Sbjct: 152 SFFNGDRAVEYLCSGIP 168
>gi|197717669|gb|ACH72675.1| RAD23 [Pinus sylvestris var. mongolica]
Length = 390
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G + +Q ++DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 145 GEAASILVAGSNLEQTIQQMLDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 200
>gi|146161955|ref|XP_001008308.2| UBA/TS-N domain containing protein [Tetrahymena thermophila]
gi|146146601|gb|EAR88063.2| UBA/TS-N domain containing protein [Tetrahymena thermophila SB210]
Length = 373
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
T+ P VSQ T + G S LL G E ++ I MG+ER V +AL+A++ N
Sbjct: 106 TTVPKPAVSQPATTQQTGSQGTG-SDLLQGPELEAKIKEIESMGFERPKVLQALKAAYYN 164
Query: 69 PDRAVEYLITG-IPAAVVGEEAPVAANEPQGNNIKQFSSV 107
P+RAV+YL++G IP +++P+ QG ++Q + +
Sbjct: 165 PERAVDYLLSGNIPKEPSQQQSPLQG--LQGPGVEQLAQL 202
>gi|224079274|ref|XP_002305813.1| predicted protein [Populus trichocarpa]
gi|222848777|gb|EEE86324.1| predicted protein [Populus trichocarpa]
Length = 385
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 5 PAAA---TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAV 58
PAAA ++ S+P A G A S L+ G +Q I+DMG + R V
Sbjct: 117 PAAALPQSAAESSPAVVTSALLDTNMYGQAASNLVAGSNLEATIQEILDMGGGDWNRETV 176
Query: 59 TEALRASFNNPDRAVEYLITGIP 81
ALRA+FNNP+RA++YL +GIP
Sbjct: 177 VRALRAAFNNPERAIDYLYSGIP 199
>gi|90657579|gb|ABD96879.1| hypothetical protein [Cleome spinosa]
Length = 383
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G +Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 141 GQAASNLVAGSNLEATIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIP 196
>gi|221055233|ref|XP_002258755.1| dna repair protein rad23 [Plasmodium knowlesi strain H]
gi|193808825|emb|CAQ39527.1| dna repair protein rad23, putative [Plasmodium knowlesi strain H]
Length = 403
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPG-------NAESTLLMGDEYGRMVQNIVDMGY 53
+I + A+S P Q AT+ A G +AES L+ G++ + NI MG+
Sbjct: 92 VIKSNEKASSLPPN-CDQNNATSNAPEEGTENRSLNSAESALVTGEKLKETIDNICAMGF 150
Query: 54 ERSAVTEALRASFNNPDRAVEYLITGIP 81
ER V +A+ +FNNP+RA++YL G P
Sbjct: 151 ERETVKKAMMMAFNNPNRAIDYLTNGFP 178
>gi|255576447|ref|XP_002529115.1| uv excision repair protein rad23, putative [Ricinus communis]
gi|223531394|gb|EEF33228.1| uv excision repair protein rad23, putative [Ricinus communis]
Length = 409
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G+ +Q I+DMG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 162 GQAASNLVAGNNLEGAIQQILDMGGGTWDRDTVVRALRAAYNNPERAVEYLYSGIP 217
>gi|412992628|emb|CCO18608.1| predicted protein [Bathycoccus prasinos]
Length = 392
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 18 QAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
Q A ++PG L++G E + ++ + MG+ R ALRA+FNNPDRAVEYL+
Sbjct: 119 QTTAEVPVSSPG-----LVVGAELEKAIEELQAMGFPRDQCVAALRAAFNNPDRAVEYLL 173
Query: 78 TGIPAAVV 85
GIP ++
Sbjct: 174 NGIPEGMM 181
>gi|357138066|ref|XP_003570619.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 368
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 6 AAATSTPSTPVSQAGATATATTPGN----AESTLLMGDEYGRMVQNIVDMG---YERSAV 58
AA +S P T SQ A TP N S LL G M+ I++MG ++R V
Sbjct: 107 AAESSVPPTTTSQP-ERPPAETPLNTVDHVASDLLSGSNLDTMINQIMEMGGGSWDRDKV 165
Query: 59 TEALRASFNNPDRAVEYLITGIPAAVVGEEA-PVAANEPQGNN 100
ALRA++NNP+RAV+YL +GIP V E A PV PQG N
Sbjct: 166 QRALRAAYNNPERAVDYLYSGIP--VTAEVAVPVG---PQGAN 203
>gi|336268454|ref|XP_003348992.1| RAD23 protein [Sordaria macrospora k-hell]
Length = 249
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
MG++ + N+ MG+ERS + A+RA++NNP+RAVEYL+ GIPA
Sbjct: 1 MGEQRAEAIANMEAMGFERSQIDAAMRAAYNNPERAVEYLLNGIPA 46
>gi|336470133|gb|EGO58295.1| hypothetical protein NEUTE1DRAFT_117137 [Neurospora tetrasperma
FGSC 2508]
gi|350290173|gb|EGZ71387.1| UV excision repair protein Rad23 [Neurospora tetrasperma FGSC 2509]
Length = 383
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
L MG++ + N+ MG+ERS + A+RA+F NP+RAVEYL+ GIPA
Sbjct: 145 LAMGEQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPA 192
>gi|361129234|gb|EHL01146.1| putative UV excision repair protein rhp23 [Glarea lozoyensis 74030]
Length = 321
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A+ P+TP AG A+A P S L MG E + + MG+ERS + A+RA+
Sbjct: 46 SASGDVPATPTP-AGTGASA--PSGNSSGLAMGAERAAQIAEMESMGFERSQIDLAMRAA 102
Query: 66 FNNPDRAVEYLITGIPAAVVGEE 88
F N +RA+EYL+TGIP + E+
Sbjct: 103 FFNSERAIEYLLTGIPENLQQEQ 125
>gi|164423937|ref|XP_959055.2| hypothetical protein NCU07542 [Neurospora crassa OR74A]
gi|157070296|gb|EAA29819.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 383
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%)
Query: 35 LLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
L MG++ + N+ MG+ERS + A+RA+F NP+RAVEYL+ GIPA
Sbjct: 145 LAMGEQRAEAIANMEAMGFERSQIDAAMRAAFFNPERAVEYLLNGIPA 192
>gi|444526365|gb|ELV14316.1| UV excision repair protein RAD23 like protein A [Tupaia chinensis]
Length = 261
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT-----GIPAAVVGEE-APV 91
G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+T PA G+
Sbjct: 61 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTESQVSEQPATEAGDNPLEF 120
Query: 92 AANEPQGNNIKQ 103
++PQ N++Q
Sbjct: 121 LRDQPQFQNMRQ 132
>gi|226496401|ref|NP_001149140.1| LOC100282762 [Zea mays]
gi|195625028|gb|ACG34344.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
A S L+ G+ + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V
Sbjct: 147 AASNLVSGNNLEQTIQQILDMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENV 203
>gi|449530301|ref|XP_004172134.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
A S L+ G VQ I+DMG ++R V ALRA++NNP+RAV+YL +GIP V
Sbjct: 177 AASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQV--- 233
Query: 88 EAPVA 92
EAP A
Sbjct: 234 EAPPA 238
>gi|195622128|gb|ACG32894.1| DNA repair protein RAD23 [Zea mays]
Length = 402
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
A S L+ G+ + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V
Sbjct: 147 AASNLVSGNNLEQTIQQILDMGGGTWERGTVVRALRAAYNNPERAIDYLYSGIPENV 203
>gi|449434628|ref|XP_004135098.1| PREDICTED: putative DNA repair protein RAD23-3-like [Cucumis
sativus]
Length = 407
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
A S L+ G VQ I+DMG ++R V ALRA++NNP+RAV+YL +GIP V
Sbjct: 177 AASNLVAGSNLEETVQQILDMGEGVWDRDTVVRALRAAYNNPERAVDYLYSGIPEQV--- 233
Query: 88 EAPVA 92
EAP A
Sbjct: 234 EAPPA 238
>gi|310791559|gb|EFQ27086.1| UV excision repair protein Rad23 [Glomerella graminicola M1.001]
Length = 391
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
G + ++ MG + ++ N+ MG+ER+ + A+RA+F NPDRAVEYL+ GIP +V E
Sbjct: 135 GPTDPSMAMGAQRQEVIANMEAMGFERAQIDAAMRAAFYNPDRAVEYLLNGIPDSVQEE 193
>gi|302756389|ref|XP_002961618.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
gi|300170277|gb|EFJ36878.1| hypothetical protein SELMODRAFT_77427 [Selaginella moellendorffii]
Length = 367
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G + +Q +VDMG ++R + ALRA++NNP+RAVEYL +GIP
Sbjct: 121 GQAASNLVAGTGLEQTIQQLVDMGGGSWDRDSCARALRAAYNNPERAVEYLYSGIP 176
>gi|320041049|gb|EFW22982.1| UV excision repair protein [Coccidioides posadasii str. Silveira]
gi|392865203|gb|EAS30978.2| UV excision repair protein Rad23 [Coccidioides immitis RS]
Length = 371
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LLMG + VQ + MG+ R + A+RA+F NPDRA+EYL++GIP
Sbjct: 130 NDPSALLMGPQSETAVQQMEAMGFARDDIQRAMRAAFFNPDRAIEYLLSGIP 181
>gi|303319113|ref|XP_003069556.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109242|gb|EER27411.1| UV excision repair protein rhp23, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 371
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LLMG + VQ + MG+ R + A+RA+F NPDRA+EYL++GIP
Sbjct: 130 NDPSALLMGPQSETAVQQMEAMGFARDDIQRAMRAAFFNPDRAIEYLLSGIP 181
>gi|357147838|ref|XP_003574508.1| PREDICTED: probable DNA repair protein RAD23-like [Brachypodium
distachyon]
Length = 394
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGI 80
G A S+L+ G VQ+I++MG ++R V ALRA+FNNP+RAVEYL TG+
Sbjct: 148 GQAASSLVAGSNLEGTVQSILEMGGGAWDRDTVVHALRAAFNNPERAVEYLYTGV 202
>gi|115476516|ref|NP_001061854.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|38175472|dbj|BAD01169.1| putative osRAD23 [Oryza sativa Japonica Group]
gi|113623823|dbj|BAF23768.1| Os08g0430200 [Oryza sativa Japonica Group]
gi|125603492|gb|EAZ42817.1| hypothetical protein OsJ_27402 [Oryza sativa Japonica Group]
gi|215694056|dbj|BAG89255.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 406
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G VQ+I++MG ++R V ALRA++NNP+RAVEYL TG+P
Sbjct: 147 GQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQA- 205
Query: 86 GEEAPVA 92
EAP A
Sbjct: 206 --EAPAA 210
>gi|124802198|ref|XP_001347399.1| DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
gi|23494978|gb|AAN35312.1|AE014830_56 DNA repair protein RAD23, putative [Plasmodium falciparum 3D7]
Length = 389
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
NAES LL GD+ + NI MG+E+ V +A+ ++NNP+RA++YL G P
Sbjct: 138 NNAESMLLTGDKLKESIDNICAMGFEKEQVKKAMILAYNNPNRAIDYLTNGFP 190
>gi|125561624|gb|EAZ07072.1| hypothetical protein OsI_29318 [Oryza sativa Indica Group]
Length = 406
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 42/67 (62%), Gaps = 6/67 (8%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
G A S L+ G VQ+I++MG ++R V ALRA++NNP+RAVEYL TG+P
Sbjct: 147 GQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALRAAYNNPERAVEYLYTGVPEQA- 205
Query: 86 GEEAPVA 92
EAP A
Sbjct: 206 --EAPAA 210
>gi|407926704|gb|EKG19665.1| Ubiquitin-associated/translation elongation factor EF1B
[Macrophomina phaseolina MS6]
Length = 383
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
N S+L MG E + N+ MG+ R+ + A+RA++ NPDRAVEYL+TGIP + +
Sbjct: 134 NNPSSLTMGPEREAAIANMESMGFPRADIDRAMRAAYFNPDRAVEYLLTGIPESAL 189
>gi|145503696|ref|XP_001437822.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404979|emb|CAK70425.1| unnamed protein product [Paramecium tetraurelia]
Length = 324
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
S ++ G EY + +QN++ MG+ +S A++A+FNN +RA+EYL+ G+P
Sbjct: 115 SNMVTGSEYDQAIQNLIQMGFAKSECEAAMKAAFNNQNRAIEYLLNGLPV 164
>gi|359483130|ref|XP_002270323.2| PREDICTED: putative DNA repair protein RAD23-1-like [Vitis
vinifera]
Length = 400
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 19 AGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEY 75
A + A T G A S ++ + + +Q I+D+G +++ VT ALRA++NNP+RAV+Y
Sbjct: 154 ATDSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDY 213
Query: 76 LITGIPAA 83
L +GIP A
Sbjct: 214 LYSGIPEA 221
>gi|261197590|ref|XP_002625197.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|239595160|gb|EEQ77741.1| UV excision repair protein Rad23 [Ajellomyces dermatitidis
SLH14081]
gi|327354300|gb|EGE83157.1| nucleotide excision repair protein RAD23 [Ajellomyces dermatitidis
ATCC 18188]
Length = 386
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
N S LLMG + +++ + MG+ RS + A+RA+F NPDRA+EYL+ GIP E+
Sbjct: 136 NDPSALLMGPQGEQVIAQMESMGFPRSDIDRAMRAAFFNPDRAIEYLLNGIPETSQAEQ 194
>gi|225679426|gb|EEH17710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 379
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S LLMG + +++ + MG+ RS + A+RA+F NPDRA+EYL+ GIP E+
Sbjct: 134 NDPSALLMGPQGEQVIAQMESMGFPRSDIDRAMRAAFFNPDRAIEYLLNGIPETSQAEQR 193
Query: 90 PVA 92
A
Sbjct: 194 EAA 196
>gi|413926348|gb|AFW66280.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 369
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 2 IGAPAAATSTPSTPVSQA---GATATA-TTPGNAESTLLMGDEYGRMVQNIVDMG---YE 54
+ AP A P P++ + G A A T NA S LL G ++ +++MG ++
Sbjct: 102 LEAPQQAPQPPVAPITTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWD 161
Query: 55 RSAVTEALRASFNNPDRAVEYLITGIP 81
+ V ALRA++NNP+RAVEYL +GIP
Sbjct: 162 KDKVQRALRAAYNNPERAVEYLYSGIP 188
>gi|298204749|emb|CBI25247.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 19 AGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEY 75
A + A T G A S ++ + + +Q I+D+G +++ VT ALRA++NNP+RAV+Y
Sbjct: 154 ATDSVLADTYGQAASNIVSANHLEQTIQQIMDIGGGTWDKETVTRALRAAYNNPERAVDY 213
Query: 76 LITGIPAA 83
L +GIP A
Sbjct: 214 LYSGIPEA 221
>gi|295665738|ref|XP_002793420.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226278334|gb|EEH33900.1| hypothetical protein PAAG_04949 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 375
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S LLMG + +++ + MG+ RS + A+RA+F NPDRA+EYL+ GIP E+
Sbjct: 130 NDPSALLMGPQGEQVIAQMESMGFPRSDIDRAMRAAFFNPDRAIEYLLNGIPETSQAEQR 189
Query: 90 PVA 92
A
Sbjct: 190 EAA 192
>gi|119182327|ref|XP_001242306.1| hypothetical protein CIMG_06202 [Coccidioides immitis RS]
Length = 418
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LLMG + VQ + MG+ R + A+RA+F NPDRA+EYL++GIP
Sbjct: 177 NDPSALLMGPQSETAVQQMEAMGFARDDIQRAMRAAFFNPDRAIEYLLSGIP 228
>gi|226291157|gb|EEH46585.1| hypothetical protein PADG_02683 [Paracoccidioides brasiliensis
Pb18]
Length = 379
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
N S LLMG + +++ + MG+ RS + A+RA+F NPDRA+EYL+ GIP E+
Sbjct: 134 NDPSALLMGPQGEQVIAQMESMGFPRSDIDRAMRAAFFNPDRAIEYLLNGIPETSQAEQR 193
Query: 90 PVA 92
A
Sbjct: 194 EAA 196
>gi|226492672|ref|NP_001148810.1| LOC100282427 [Zea mays]
gi|195622286|gb|ACG32973.1| DNA repair protein RAD23-1 [Zea mays]
gi|238014028|gb|ACR38049.1| unknown [Zea mays]
gi|413926349|gb|AFW66281.1| DNA repair protein RAD23-1 isoform 1 [Zea mays]
gi|413926350|gb|AFW66282.1| DNA repair protein RAD23-1 isoform 2 [Zea mays]
gi|413926351|gb|AFW66283.1| DNA repair protein RAD23-1 isoform 3 [Zea mays]
Length = 368
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 7/87 (8%)
Query: 2 IGAPAAATSTPSTPVSQA---GATATA-TTPGNAESTLLMGDEYGRMVQNIVDMG---YE 54
+ AP A P P++ + G A A T NA S LL G ++ +++MG ++
Sbjct: 102 LEAPQQAPQPPVAPITTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWD 161
Query: 55 RSAVTEALRASFNNPDRAVEYLITGIP 81
+ V ALRA++NNP+RAVEYL +GIP
Sbjct: 162 KDKVQRALRAAYNNPERAVEYLYSGIP 188
>gi|125554823|gb|EAZ00429.1| hypothetical protein OsI_22453 [Oryza sativa Indica Group]
Length = 413
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
A S L+ G + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V
Sbjct: 155 AASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENV 211
>gi|115467470|ref|NP_001057334.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|53793157|dbj|BAD54365.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|53793163|dbj|BAD54370.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113595374|dbj|BAF19248.1| Os06g0264300 [Oryza sativa Japonica Group]
gi|125596775|gb|EAZ36555.1| hypothetical protein OsJ_20893 [Oryza sativa Japonica Group]
gi|215692584|dbj|BAG88004.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 413
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
A S L+ G + +Q I+DMG +ER V ALRA++NNP+RA++YL +GIP V
Sbjct: 155 AASNLVSGSNLEQTIQQILDMGGGTWERDMVVRALRAAYNNPERAIDYLYSGIPENV 211
>gi|308510422|ref|XP_003117394.1| CRE-RAD-23 protein [Caenorhabditis remanei]
gi|308242308|gb|EFO86260.1| CRE-RAD-23 protein [Caenorhabditis remanei]
Length = 323
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE-----APVAANEPQGN 99
V I MGY+R ALRA+F N DRAVE+L+TGIP VV +E AP NE N
Sbjct: 134 VSAITGMGYDREQTIAALRAAFWNADRAVEFLLTGIPEDVVDQEPLLADAPAVENEEDAN 193
Query: 100 -NIKQFSSVKEI-EIPNLMQ 117
++ +++ ++ EI N++Q
Sbjct: 194 DDLNMLANMPQLGEIRNMIQ 213
>gi|363807216|ref|NP_001242098.1| uncharacterized protein LOC100813881 [Glycine max]
gi|255641670|gb|ACU21107.1| unknown [Glycine max]
Length = 400
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G +Q I+DMG ++R V LRA++NNP+RAVEYL +GIP
Sbjct: 157 GQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIP 212
>gi|321250146|ref|XP_003191705.1| uv excision repair protein rhp23 [Cryptococcus gattii WM276]
gi|317458172|gb|ADV19918.1| uv excision repair protein rhp23, putative [Cryptococcus gattii
WM276]
Length = 394
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPA 82
+ +V+MG+ER V ALRASFNNPDRAVEYL++G IP+
Sbjct: 149 IDGMVEMGFERDQVIRALRASFNNPDRAVEYLMSGNIPS 187
>gi|296418227|ref|XP_002838743.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634704|emb|CAZ82934.1| unnamed protein product [Tuber melanosporum]
Length = 385
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
APA A + ST S + A TP A T E + N++ MG+ERS + A+R
Sbjct: 110 APAQAVTGSST--STSAAVPETPTPAGAVGTTFNDPE--DAIVNMMGMGFERSEIERAMR 165
Query: 64 ASFNNPDRAVEYLITGIPAAVVGE 87
A+F NPDRAV+YL+ GIP + E
Sbjct: 166 AAFFNPDRAVDYLLNGIPEHLTQE 189
>gi|255636381|gb|ACU18529.1| unknown [Glycine max]
Length = 382
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G +Q I+DMG ++R V LRA++NNP+RAVEYL +GIP
Sbjct: 139 GQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRTLRAAYNNPERAVEYLYSGIP 194
>gi|452985526|gb|EME85282.1| hypothetical protein MYCFIDRAFT_119289, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 390
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G AT P S L MG++ + N+ MG+ R + A+RA+F NPDRAVEYL+ G
Sbjct: 126 GDVATFNDP----SALAMGEQRAAAIANMEAMGFPRDQIDAAMRAAFFNPDRAVEYLLNG 181
Query: 80 IPAAVVGEE 88
IP + E+
Sbjct: 182 IPESARQEQ 190
>gi|145538419|ref|XP_001454915.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422692|emb|CAK87518.1| unnamed protein product [Paramecium tetraurelia]
Length = 331
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 18 QAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
QA A P N ++ G EY +QN++ MG+ +S A++A++NNPDRA+EYL+
Sbjct: 104 QAFKPVVAPAPQN----MVTGSEYDAAIQNLIQMGFAKSECEAAMKAAYNNPDRAIEYLL 159
Query: 78 TGI 80
GI
Sbjct: 160 NGI 162
>gi|195037074|ref|XP_001989990.1| GH18491 [Drosophila grimshawi]
gi|193894186|gb|EDV93052.1| GH18491 [Drosophila grimshawi]
Length = 282
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
V++++ MGYE V ALRASFN+P+RA+EYLITGIP
Sbjct: 113 VRDLILMGYEEQDVRAALRASFNHPERAIEYLITGIP 149
>gi|58259375|ref|XP_567100.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57223237|gb|AAW41281.1| uv excision repair protein rhp23, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 406
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPA 82
+ +V+MG+ER V ALRASFNNPDRAVEYL++G IP+
Sbjct: 157 IDGMVEMGFERDQVIRALRASFNNPDRAVEYLMSGNIPS 195
>gi|413926352|gb|AFW66284.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 296
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 4 APAAATSTPSTPVSQA---GATATA-TTPGNAESTLLMGDEYGRMVQNIVDMG---YERS 56
AP A P P++ + G A A T NA S LL G ++ +++MG +++
Sbjct: 104 APQQAPQPPVAPITTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWDKD 163
Query: 57 AVTEALRASFNNPDRAVEYLITGIPA 82
V ALRA++NNP+RAVEYL +GIP
Sbjct: 164 KVQRALRAAYNNPERAVEYLYSGIPV 189
>gi|325091544|gb|EGC44854.1| pre-mRNA-splicing factor Cwc24 [Ajellomyces capsulatus H88]
Length = 826
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 26 TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
+T N S LLMG + ++V + MG+ RS + A+RA++ NPDRA+EYL+ GIP
Sbjct: 572 STTFNDPSALLMGPQGEQVVAQMESMGFPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQ 631
Query: 86 GEE 88
E
Sbjct: 632 AEH 634
>gi|405118128|gb|AFR92903.1| uv excision repair protein rhp23 [Cryptococcus neoformans var.
grubii H99]
Length = 390
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPA 82
+ +V+MG+ER V ALRASFNNPDRAVEYL++G IP+
Sbjct: 147 IDGMVEMGFERDQVIRALRASFNNPDRAVEYLMSGNIPS 185
>gi|134107453|ref|XP_777611.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260305|gb|EAL22964.1| hypothetical protein CNBA7320 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 404
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%), Gaps = 1/39 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPA 82
+ +V+MG+ER V ALRASFNNPDRAVEYL++G IP+
Sbjct: 155 IDGMVEMGFERDQVIRALRASFNNPDRAVEYLMSGNIPS 193
>gi|225562098|gb|EEH10378.1| nucleotide excision repair protein RAD23 [Ajellomyces capsulatus
G186AR]
Length = 386
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 26 TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
+T N S LLMG + ++V + MG+ RS + A+RA++ NPDRA+EYL+ GIP
Sbjct: 132 STTFNDPSALLMGPQGEQVVAQMESMGFPRSDIDRAMRAAYFNPDRAIEYLLNGIPETTQ 191
Query: 86 GEE 88
E
Sbjct: 192 AEH 194
>gi|403221228|dbj|BAM39361.1| DNA repair protein [Theileria orientalis strain Shintoku]
Length = 323
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPAAVVGEEAPV 91
S L+MG E + + I +MG++R++V A+ A+FNNP+RAVE+L TG IP+ V E P
Sbjct: 127 SRLVMGSELDQNINRICEMGFDRASVERAMAAAFNNPERAVEFLSTGNIPS--VNLENPG 184
Query: 92 AANEP 96
N P
Sbjct: 185 TQNTP 189
>gi|195331506|ref|XP_002032442.1| GM26556 [Drosophila sechellia]
gi|194121385|gb|EDW43428.1| GM26556 [Drosophila sechellia]
Length = 288
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
+I +P+ P+ P++ AG T T + +L D++ V +++ MGY V
Sbjct: 77 VIESPSEEQVAPTPPLA-AGPTVLRTE--DVAPSLAPNDQW---VNDLMSMGYGEEEVRS 130
Query: 61 ALRASFNNPDRAVEYLITGIPAAVVGEE 88
ALRASFN+P+RA+EYLI GIP V E+
Sbjct: 131 ALRASFNHPERAIEYLINGIPQEVASEQ 158
>gi|340959556|gb|EGS20737.1| putative excision repair protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 376
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP 90
++L +G + N+ MG+ERS + A+RA+FNNP+RAVEYL+ GIP + E P
Sbjct: 140 NSLAIGAARAEAIANMEAMGFERSQIDIAMRAAFNNPERAVEYLLNGIPPHLQQEAQP 197
>gi|312095801|ref|XP_003148472.1| UV excision repair protein Rad23 containing protein [Loa loa]
Length = 341
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
PAAA T TP S + A P N+ + + E Q IV MGY R V ALRA
Sbjct: 108 PAAAQVTTVTPASVTDNSPAA--PQNSGISDGLTPEQEETAQAIVAMGYSRDKVIRALRA 165
Query: 65 SFNNPDRAVEYLITGIP 81
SF N DRAVEYL +GIP
Sbjct: 166 SFFNGDRAVEYLCSGIP 182
>gi|21355163|ref|NP_651212.1| CG10694 [Drosophila melanogaster]
gi|7301100|gb|AAF56234.1| CG10694 [Drosophila melanogaster]
gi|19527925|gb|AAL90077.1| AT15685p [Drosophila melanogaster]
gi|220949914|gb|ACL87500.1| CG10694-PA [synthetic construct]
gi|220958714|gb|ACL91900.1| CG10694-PA [synthetic construct]
Length = 290
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
V +++ MGY V ALRASFN+P+RA+EYLI GIP VV E+
Sbjct: 115 VSDLMSMGYGEEEVRSALRASFNHPERAIEYLINGIPQEVVSEQ 158
>gi|315049547|ref|XP_003174148.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
gi|311342115|gb|EFR01318.1| nucleotide excision repair protein RAD23 [Arthroderma gypseum CBS
118893]
Length = 380
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 2 IGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEA 61
+ AP T +P A + A++ N S LLMG++ + ++ MG+ R + A
Sbjct: 108 VNAPPLQTPATPSPAGGASSGASSGATFNDPSALLMGNQGQEAITQMLAMGFSRGDIDRA 167
Query: 62 LRASFNNPDRAVEYLITGIP 81
+RA++ NPDRA+EYL+ GIP
Sbjct: 168 MRAAYFNPDRAIEYLLNGIP 187
>gi|115444607|ref|NP_001046083.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|50252077|dbj|BAD28007.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113535614|dbj|BAF07997.1| Os02g0179300 [Oryza sativa Japonica Group]
gi|222622305|gb|EEE56437.1| hypothetical protein OsJ_05616 [Oryza sativa Japonica Group]
Length = 369
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRAS 65
T P P ++A + A G A S LL G + +++MG ++R V ALRA+
Sbjct: 118 TPQPERPPAEAPSNAY----GQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAA 173
Query: 66 FNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEIE---IPN 114
+NNP+RAVEYL +GIP + E A A QG N + SS +E IPN
Sbjct: 174 YNNPERAVEYLYSGIP--ITAEVAVPAGG--QGANTTEPSSTREASLSGIPN 221
>gi|218190185|gb|EEC72612.1| hypothetical protein OsI_06092 [Oryza sativa Indica Group]
Length = 369
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 59/112 (52%), Gaps = 14/112 (12%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRAS 65
T P P ++A + A G A S LL G + +++MG ++R V ALRA+
Sbjct: 118 TPQPERPPAEAPSNAY----GQAASNLLSGSNLDTTINQLMEMGGGSWDRDKVQRALRAA 173
Query: 66 FNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEIE---IPN 114
+NNP+RAVEYL +GIP + E A A QG N + SS +E IPN
Sbjct: 174 YNNPERAVEYLYSGIP--ITAEVAVPAGG--QGANTTEPSSTREASLSGIPN 221
>gi|195108433|ref|XP_001998797.1| GI24165 [Drosophila mojavensis]
gi|193915391|gb|EDW14258.1| GI24165 [Drosophila mojavensis]
Length = 299
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
V+++V MGY+ V ALRASFN+P+RA+EYLITGIP V
Sbjct: 123 VRDLVLMGYDEPDVRAALRASFNHPERAIEYLITGIPTHV 162
>gi|147773186|emb|CAN62701.1| hypothetical protein VITISV_007064 [Vitis vinifera]
Length = 349
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLIT 78
+ A T G A S ++ + + +Q I+D+G +++ VT ALRA++NNP+RAV+YL +
Sbjct: 159 SVLADTYGQAASNIVSANHLEQTIQQIMDIGGGNWDKETVTRALRAAYNNPERAVDYLYS 218
Query: 79 GIPAA 83
GIP A
Sbjct: 219 GIPEA 223
>gi|289741355|gb|ADD19425.1| nucleotide excision repair factor NEF2 RAD23 component [Glossina
morsitans morsitans]
Length = 377
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 29/38 (76%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+VQ I+ MGY + V AL ASFNNPDRA+EYLI GIP
Sbjct: 177 LVQEIMSMGYAEADVRRALLASFNNPDRAIEYLIEGIP 214
>gi|388499670|gb|AFK37901.1| unknown [Medicago truncatula]
Length = 215
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 6/65 (9%)
Query: 32 ESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
ES L+ G +Q I++MG ++R V ALRA++NNP+RAVEYL +GIP E
Sbjct: 136 ESNLIAGSTLEPTIQQILEMGGGSWDRDTVIRALRAAYNNPERAVEYLYSGIPEQA---E 192
Query: 89 APVAA 93
AP A
Sbjct: 193 APAVA 197
>gi|320586564|gb|EFW99234.1| uv excision repair protein [Grosmannia clavigera kw1407]
Length = 400
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 12 PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDR 71
PS AG TA T ++ +G + N+ MG+ERS ++ A+RA++NNPDR
Sbjct: 124 PSPAARAAGPTAGGATSYTDPNSFSVGPALQEAITNMEAMGFERSQISAAMRAAYNNPDR 183
Query: 72 AVEYLIT--GIP 81
AVEYL+T GIP
Sbjct: 184 AVEYLLTLQGIP 195
>gi|367049660|ref|XP_003655209.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
gi|347002473|gb|AEO68873.1| hypothetical protein THITE_2118639 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 35/49 (71%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+TL +G E + N+ MG+ERS + A+RA+F NP+RAVEY++ GIP
Sbjct: 140 NTLAIGQERAEAIANLEAMGFERSQIDAAMRAAFYNPERAVEYILNGIP 188
>gi|224057188|ref|XP_002299163.1| predicted protein [Populus trichocarpa]
gi|222846421|gb|EEE83968.1| predicted protein [Populus trichocarpa]
Length = 349
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Query: 25 ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
+ T G A S L+ G + +Q I+D+G +++ VT ALRA++NNP+RAV+YL +GIP
Sbjct: 105 SDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAVDYLYSGIP 164
>gi|170092959|ref|XP_001877701.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647560|gb|EDR11804.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 378
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 44/85 (51%), Gaps = 17/85 (20%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP-- 90
ST L G+ + N+ +MG+ R V A+RAS+NN DRAVEYL+TGIPA + E A
Sbjct: 147 STFLSGEALQSAITNMTEMGFPRDQVLRAMRASYNNADRAVEYLMTGIPAHLEAEAAGPT 206
Query: 91 ---------------VAANEPQGNN 100
++AN P N
Sbjct: 207 PPTAAPATQPAAAAPISANVPPPNQ 231
>gi|356557201|ref|XP_003546906.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 284
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGI 80
T T G A S L+ G + +Q I+D+G ++R V+ ALRA++NNP RAV+YL + I
Sbjct: 45 TTDTYGQAASNLVAGSSLEQTIQQIMDLGGGSWDRDTVSRALRAAYNNPKRAVDYLYSRI 104
Query: 81 PAA 83
P A
Sbjct: 105 PEA 107
>gi|340505565|gb|EGR31882.1| uv excision repair protein, putative [Ichthyophthirius multifiliis]
Length = 395
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPA 82
S ++MG E + +I MG+ERS V +AL+A++NNP+RAVEYL++G IP+
Sbjct: 123 SDMVMGAELEAKIADIESMGFERSKVIQALKAAYNNPERAVEYLLSGHIPS 173
>gi|5640111|emb|CAB51544.1| RAD23 protein [Solanum lycopersicum var. cerasiforme]
Length = 389
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Query: 31 AESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
A S L+ G VQ I+DMG ++R V ALRA++NNP+RAV+YL +GIP
Sbjct: 145 AASNLVAGSNLETTVQQILDMGGGSWDRDTVVRALRAAYNNPERAVDYLYSGIP 198
>gi|195573349|ref|XP_002104656.1| GD21063 [Drosophila simulans]
gi|194200583|gb|EDX14159.1| GD21063 [Drosophila simulans]
Length = 288
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
+I +P P+ P++ AG T T + +L D++ V +++ MGY V
Sbjct: 77 VIESPPEEQVAPTPPLA-AGPTVLRTE--DVAPSLAPNDQW---VNDLMSMGYGEEEVRS 130
Query: 61 ALRASFNNPDRAVEYLITGIPAAVVGEE 88
ALRASFN+P+RA+EYLI GIP V E+
Sbjct: 131 ALRASFNHPERAIEYLINGIPQEVASEQ 158
>gi|1488297|gb|AAB65841.1| osRAD23 [Oryza sativa Japonica Group]
Length = 392
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 11 TPSTPVSQAGATATATTP---GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRA 64
TP+ S A A A ++ G A S L+ G +Q+I++MG ++R V AL A
Sbjct: 125 TPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSA 184
Query: 65 SFNNPDRAVEYLITGIP 81
+FNNP+RAVEYL +G+P
Sbjct: 185 AFNNPERAVEYLYSGVP 201
>gi|115479081|ref|NP_001063134.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|55976306|sp|Q40742.2|RAD23_ORYSJ RecName: Full=Probable DNA repair protein RAD23; AltName:
Full=OsRAD23
gi|51091502|dbj|BAD36240.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|51091558|dbj|BAD36295.1| putative RAD23 protein [Oryza sativa Japonica Group]
gi|113631367|dbj|BAF25048.1| Os09g0407200 [Oryza sativa Japonica Group]
gi|125563673|gb|EAZ09053.1| hypothetical protein OsI_31314 [Oryza sativa Indica Group]
gi|125605644|gb|EAZ44680.1| hypothetical protein OsJ_29306 [Oryza sativa Japonica Group]
Length = 392
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 11 TPSTPVSQAGATATATTP---GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRA 64
TP+ S A A A ++ G A S L+ G +Q+I++MG ++R V AL A
Sbjct: 125 TPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSA 184
Query: 65 SFNNPDRAVEYLITGIP 81
+FNNP+RAVEYL +G+P
Sbjct: 185 AFNNPERAVEYLYSGVP 201
>gi|388511083|gb|AFK43607.1| unknown [Lotus japonicus]
Length = 228
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%), Gaps = 3/41 (7%)
Query: 44 MVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
M+Q I+DMG ++R V ALRA+FNNP+RAV+YL +GIP
Sbjct: 1 MIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIP 41
>gi|389633979|ref|XP_003714642.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|351646975|gb|EHA54835.1| UV excision repair protein Rad23 [Magnaporthe oryzae 70-15]
gi|440474553|gb|ELQ43290.1| hypothetical protein OOU_Y34scaffold00162g59 [Magnaporthe oryzae
Y34]
gi|440479744|gb|ELQ60492.1| hypothetical protein OOW_P131scaffold01287g24 [Magnaporthe oryzae
P131]
Length = 401
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+ P+TP Q A N + L G + N+ MG+ER+ + A+RA++ NP
Sbjct: 116 AVPATPTPQRAGEAPGGANFNDPNMLSTGAARDEAIANMEAMGFERTQIDAAMRAAYFNP 175
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 176 DRAVEYLLNGIP 187
>gi|406700023|gb|EKD03210.1| hypothetical protein A1Q2_02493 [Trichosporon asahii var. asahii
CBS 8904]
Length = 339
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IP 81
+ +V+MG+ER V +ALRAS+NNPDRAVEYL++G IP
Sbjct: 98 IDGMVEMGFERDQVVKALRASYNNPDRAVEYLMSGNIP 135
>gi|401883698|gb|EJT47893.1| hypothetical protein A1Q1_03199 [Trichosporon asahii var. asahii
CBS 2479]
Length = 348
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IP 81
+ +V+MG+ER V +ALRAS+NNPDRAVEYL++G IP
Sbjct: 107 IDGMVEMGFERDQVVKALRASYNNPDRAVEYLMSGNIP 144
>gi|356567282|ref|XP_003551850.1| PREDICTED: putative DNA repair protein RAD23-4-like [Glycine max]
Length = 375
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRAS 65
+++ +PV A + +A S L+ G +Q I++MG ++R VT AL A+
Sbjct: 117 SNSEQSPVITPPTIAVPSIYDHAASNLMAGSNLETTIQQILEMGGGNWDRDTVTGALHAA 176
Query: 66 FNNPDRAVEYLITGIP 81
FNNP+RA+EYL +GIP
Sbjct: 177 FNNPERAIEYLYSGIP 192
>gi|238567698|ref|XP_002386292.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
gi|215437819|gb|EEB87222.1| hypothetical protein MPER_15516 [Moniliophthora perniciosa FA553]
Length = 161
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
S+ L G + N+V+MG+ + V ALRASFNNPDRAVEYL+
Sbjct: 116 SSFLSGSALQDTINNMVEMGFPKDQVLRALRASFNNPDRAVEYLM 160
>gi|297286975|ref|XP_001085658.2| PREDICTED: UV excision repair protein RAD23 homolog B [Macaca
mulatta]
Length = 406
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 31/52 (59%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I MGYE V A RASF N DRAVE L+ GIP
Sbjct: 181 DATSALVTGQPYENMVTEITPMGYEXEQVIAAPRASFKNLDRAVECLVMGIP 232
>gi|414885361|tpg|DAA61375.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 339
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G +++I++MG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 144 GQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIP 199
>gi|195445192|ref|XP_002070215.1| GK11154 [Drosophila willistoni]
gi|194166300|gb|EDW81201.1| GK11154 [Drosophila willistoni]
Length = 284
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
V+ +V MGYE V ALRASFN+P+RA+EYLI G+P
Sbjct: 116 VRELVSMGYEEEEVRAALRASFNHPERAIEYLINGLP 152
>gi|195400082|ref|XP_002058647.1| GJ14198 [Drosophila virilis]
gi|194142207|gb|EDW58615.1| GJ14198 [Drosophila virilis]
Length = 290
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 33/41 (80%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
V++++ MGYE V AL ASFN+P+RA+EYLITGIP++ V
Sbjct: 114 VRDLMLMGYEEQDVRAALSASFNHPERAIEYLITGIPSSHV 154
>gi|70998612|ref|XP_754028.1| UV excision repair protein (RadW) [Aspergillus fumigatus Af293]
gi|66851664|gb|EAL91990.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
Af293]
gi|159126238|gb|EDP51354.1| UV excision repair protein (RadW), putative [Aspergillus fumigatus
A1163]
Length = 376
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LL G + ++ + MG+ RS + A+RA+F NPDRA+EYL+ GIP
Sbjct: 136 NDPSALLSGSQSEAVISQMESMGFPRSDINRAMRAAFFNPDRAIEYLLNGIP 187
>gi|119498549|ref|XP_001266032.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
gi|119414196|gb|EAW24135.1| UV excision repair protein (RadW), putative [Neosartorya fischeri
NRRL 181]
Length = 360
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
N S LL G + ++ + MG+ RS + A+RA+F NPDRA+EYL+ GIP + E
Sbjct: 120 NDPSALLSGSQSEAVISQMESMGFPRSDINRAMRAAFFNPDRAIEYLLNGIPDNIQQE 177
>gi|121712652|ref|XP_001273937.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
gi|119402090|gb|EAW12511.1| UV excision repair protein (RadW), putative [Aspergillus clavatus
NRRL 1]
Length = 383
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
N S LL G + +V + MG+ RS + A+RA+F NPDRA+EYL+ GIP + E
Sbjct: 136 NDPSALLSGAQSEAVVAQMESMGFPRSDINRAMRAAFFNPDRAIEYLLNGIPETIHQE 193
>gi|326529487|dbj|BAK04690.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEAL 62
+ TS P P A +T A S LL G M+ I++MG ++R V AL
Sbjct: 114 STTTSQPERP----PAETPLSTVDIAASDLLSGSNLDTMINQIMEMGGGSWDRDKVQRAL 169
Query: 63 RASFNNPDRAVEYLITGIPAA------VVGEEAPVAANEP 96
RA++NNP+RA++YL +GIP VVG+ A A P
Sbjct: 170 RAAYNNPERAIDYLYSGIPVTAEVAVPVVGQGANTTAAAP 209
>gi|4336714|gb|AAD17913.1| repC-binding protein A [Dictyostelium discoideum]
Length = 341
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPAA 83
S G E ++NI DMG+ R V ALR +FNN +RA+EYL++G IPAA
Sbjct: 154 SDFATGTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSGNIPAA 205
>gi|428184303|gb|EKX53158.1| hypothetical protein GUITHDRAFT_64501 [Guillardia theta CCMP2712]
Length = 346
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 25 ATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
A T G +T+LMG++ V+ I MG+ S V ALR +FNNPDRAVE L G
Sbjct: 98 AVTSGLQNNTILMGEDLEASVREICGMGFAESEVRRALRLAFNNPDRAVEILYNG 152
>gi|66808013|ref|XP_637729.1| repC-binding protein A [Dictyostelium discoideum AX4]
gi|74853451|sp|Q54LV1.1|RAD23_DICDI RecName: Full=UV excision repair protein RAD23 homolog; AltName:
Full=repC-binding protein A
gi|60466140|gb|EAL64203.1| repC-binding protein A [Dictyostelium discoideum AX4]
Length = 342
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPAA 83
G E ++NI DMG+ R V ALR +FNN +RA+EYL++G IPAA
Sbjct: 160 GTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSGNIPAA 206
>gi|194700232|gb|ACF84200.1| unknown [Zea mays]
gi|195625372|gb|ACG34516.1| DNA repair protein RAD23 [Zea mays]
gi|414885362|tpg|DAA61376.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 386
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G +++I++MG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 144 GQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIP 199
>gi|399218138|emb|CCF75025.1| unnamed protein product [Babesia microti strain RI]
Length = 334
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
STP++ A + P + LLMG+E + + IV+MG++ +V A+ A+FNNP+RA
Sbjct: 91 STPIADANTSPPKPIPTTDPNALLMGEELEKAINGIVEMGFDVESVKAAMSAAFNNPNRA 150
Query: 73 VEYL 76
+E L
Sbjct: 151 IELL 154
>gi|194690718|gb|ACF79443.1| unknown [Zea mays]
gi|414589469|tpg|DAA40040.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 365
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 25 ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
A + G A S L+ G +Q+I++MG ++R V ALR ++NNP+RAVEYL +GIP
Sbjct: 115 ADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIP 174
>gi|414885365|tpg|DAA61379.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 382
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G +++I++MG ++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 140 GQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLRALRAAYNNPERAVEYLYSGIP 195
>gi|342320043|gb|EGU11986.1| Uv excision repair protein rhp23, putative [Rhodotorula glutinis
ATCC 204091]
Length = 403
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 25 ATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
A P + ++ + G + +V MG+ R V A+RASFNNP RAVEYL+TGI
Sbjct: 137 ANQPADEATSFISGSALETSISEMVAMGFPREQVQRAMRASFNNPHRAVEYLMTGI 192
>gi|226528090|ref|NP_001149553.1| LOC100283179 [Zea mays]
gi|194700938|gb|ACF84553.1| unknown [Zea mays]
gi|195627978|gb|ACG35819.1| DNA repair protein RAD23 [Zea mays]
gi|414589470|tpg|DAA40041.1| TPA: DNA repair protein RAD23 [Zea mays]
Length = 390
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 25 ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
A + G A S L+ G +Q+I++MG ++R V ALR ++NNP+RAVEYL +GIP
Sbjct: 140 ADSYGQAASNLVAGSNLEGTIQSILEMGGGIWDRDTVLRALRVAYNNPERAVEYLYSGIP 199
>gi|325187409|emb|CCA21947.1| UV excision repair protein RAD23 putative [Albugo laibachii Nc14]
Length = 420
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA---------PVAANE 95
V + DMG+ V L+A+F NPDRAVEYL+ GIP +V + P A +
Sbjct: 147 VGQLCDMGFPEEQVRSCLQAAFGNPDRAVEYLMNGIPENLVNPTSAAAAPTTGGPSAGSL 206
Query: 96 PQGNNIKQFSSVKEI------EIPNLMQ 117
Q N QF+S +E+ +P L+Q
Sbjct: 207 EQLRNHPQFASFREVVRTNPAALPALLQ 234
>gi|342181674|emb|CCC91154.1| putative UV excision repair RAD23 protein, partial [Trypanosoma
congolense IL3000]
Length = 280
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYE-RSAVTEA 61
G+ A AT++ TP Q A A P S ++ +I MG+E R + A
Sbjct: 29 GSEAPATASAPTPGEQPSAETAAAAPRTGSSVAATQGVDPALIDSIAAMGFEDRDQIALA 88
Query: 62 LRASFNNPDRAVEYLITGIPAAVVGE 87
LRA++ NPDRAVE+L TGIP+ V E
Sbjct: 89 LRAAYMNPDRAVEFLFTGIPSHVQRE 114
>gi|358373285|dbj|GAA89884.1| UV excision repair protein [Aspergillus kawachii IFO 4308]
Length = 369
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LL G + +V + MG+ RS V A+RA+F NPDRA+EYL+ GIP
Sbjct: 134 NDPSALLSGTQSEAVVAQMEAMGFARSDVNRAMRAAFFNPDRAIEYLLNGIP 185
>gi|218190702|gb|EEC73129.1| hypothetical protein OsI_07141 [Oryza sativa Indica Group]
Length = 242
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G VQ+I++MG ++R V AL A++NNP+RAVEYL TG+P
Sbjct: 162 GQAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
>gi|115438372|ref|XP_001218049.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188864|gb|EAU30564.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 377
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S L+ G E V + MG+ R + A+RA+F NPDRAVEYL++GIP
Sbjct: 135 NDPSALMTGRENENAVAQMESMGFARDDINRAMRAAFFNPDRAVEYLLSGIP 186
>gi|357138887|ref|XP_003571018.1| PREDICTED: putative DNA repair protein RAD23-1-like [Brachypodium
distachyon]
Length = 290
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 9/72 (12%)
Query: 33 STLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
S LL G M+ I++MG ++R V ALRA++NNP+RAV+YL +GIP V E A
Sbjct: 106 SDLLSGSNLDTMINQIMEMGGGSWDRDKVQRALRAAYNNPERAVDYLYSGIP--VTAEVA 163
Query: 90 -PVAANEPQGNN 100
PV PQG N
Sbjct: 164 VPVV---PQGAN 172
>gi|453087458|gb|EMF15499.1| UV excision repair protein Rad23 [Mycosphaerella populorum SO2202]
Length = 392
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S L MG++ + + MG+ R + A+RA+F NPDRAVEYL+ GIP
Sbjct: 132 NDPSALAMGEQRAAAIAGMEAMGFARDQIDAAMRAAFFNPDRAVEYLLNGIP 183
>gi|62362186|gb|AAX81530.1| RAD23B-like protein [Adineta ricciae]
Length = 244
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 21 ATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG- 79
A A+ TTP ++ + L + + ++ + DMG++R+ ALRASF + +RA EYLITG
Sbjct: 125 APASGTTPAASQDSFLSAESREKALRELTDMGFDRAQAELALRASFYHVERAAEYLITGN 184
Query: 80 IPAAVVGEEAPVAANEPQG 98
IP + E P AAN P+G
Sbjct: 185 IPN--ISE--PSAAN-PEG 198
>gi|1914683|emb|CAA72741.1| RAD23, isoform I [Daucus carota]
Length = 382
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G +Q I+DMG ++R V +RA+FNNP+RAVEYL +GIP
Sbjct: 147 SAASLLVAGSNLEGAIQQILDMGGGTWDRDTVIRIVRAAFNNPERAVEYLYSGIP 201
>gi|392576824|gb|EIW69954.1| hypothetical protein TREMEDRAFT_68394 [Tremella mesenterica DSM
1558]
Length = 379
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
G + S+ + G + ++V+MG+E V ALRAS+NNPDRAV+YL++G
Sbjct: 130 GLSSSSFVTGPALQAAISSMVEMGFEHDQVVRALRASYNNPDRAVDYLMSG 180
>gi|341889007|gb|EGT44942.1| CBN-RAD-23 protein [Caenorhabditis brenneri]
Length = 328
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
I MGY+R ALRA+F NPDRAVE+L+ GIP VV +E
Sbjct: 133 ITGMGYDREQAVAALRAAFWNPDRAVEFLLNGIPDDVVDQE 173
>gi|71416587|ref|XP_810308.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70874820|gb|EAN88457.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
+V NI+ MG+E R V ALRA++ NPDRAVE+L TGIP+ V+
Sbjct: 154 LVDNIIAMGFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL 196
>gi|402087037|gb|EJT81935.1| UV excision repair protein Rad23 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 377
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
+ N+ MG+ERS + A+RA+F NPDRAVEYL+ GIP + P + PQ
Sbjct: 124 IANMEAMGFERSQIDAAMRAAFFNPDRAVEYLLNGIPDNLRQNPQPPRQSAPQ 176
>gi|71410028|ref|XP_807329.1| UV excision repair RAD23-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70871306|gb|EAN85478.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
+V NI+ MG+E R V ALRA++ NPDRAVE+L TGIP+ V+
Sbjct: 154 LVDNIIAMGFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL 196
>gi|407851853|gb|EKG05558.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi]
Length = 361
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVV 85
+V NI+ MG+E R V ALRA++ NPDRAVE+L TGIP+ V+
Sbjct: 154 LVDNIIAMGFEDREQVALALRAAYMNPDRAVEFLCTGIPSDVL 196
>gi|194909981|ref|XP_001982049.1| GG11252 [Drosophila erecta]
gi|190656687|gb|EDV53919.1| GG11252 [Drosophila erecta]
Length = 297
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIK 102
+ V +++ MGY V ALRASFN+P+RA+EYLI GIP E A P G + +
Sbjct: 111 QWVCDLMSMGYGEQEVRSALRASFNHPERAIEYLINGIPQEASPEHE--LAEIPSGQSTE 168
Query: 103 Q---------FSSVKEI--EIPNLMQ 117
Q + V+E+ E P LMQ
Sbjct: 169 QLQHLMGDPRLTQVREMIRENPELMQ 194
>gi|195144934|ref|XP_002013451.1| GL23402 [Drosophila persimilis]
gi|194102394|gb|EDW24437.1| GL23402 [Drosophila persimilis]
Length = 314
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 20 GATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
GA AT GN S++ +E MVQ ++ MGYE V AL ASFN+P+ A+EYLI
Sbjct: 108 GAETYATGGGNPTSSVAPNEE---MVQRLMGMGYEEMPVRAALSASFNHPELAIEYLIAQ 164
Query: 80 IPA-AVVGEEAPVAAN 94
IP+ A G +PV+ +
Sbjct: 165 IPSEAASGTASPVSVS 180
>gi|330803429|ref|XP_003289709.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
gi|325080219|gb|EGC33784.1| hypothetical protein DICPUDRAFT_48776 [Dictyostelium purpureum]
Length = 349
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPA 82
T+ + + + + G E ++NIVDMG++R V ALR +NN DRAVE L++G IP
Sbjct: 141 TSPSQNTSSTDFVTGTELENTIKNIVDMGFQREQVIRALRLGYNNADRAVELLLSGSIPE 200
Query: 83 AVVGEE 88
+E
Sbjct: 201 NAADDE 206
>gi|340384331|ref|XP_003390667.1| PREDICTED: UV excision repair protein RAD23 homolog B-like
[Amphimedon queenslandica]
Length = 363
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 36 LMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANE 95
+ G +Y R V ++V MG+ R+ V AL+AS+NNP RA+EYL P + EEA E
Sbjct: 110 ITGTDYERTVNDMVGMGFMRNDVVRALQASYNNPTRAMEYLCGERPMPTLEEEA-----E 164
Query: 96 PQ 97
PQ
Sbjct: 165 PQ 166
>gi|67523697|ref|XP_659908.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
gi|40745259|gb|EAA64415.1| hypothetical protein AN2304.2 [Aspergillus nidulans FGSC A4]
Length = 378
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL---------ITGI 80
N S LL G + ++ ++ MG+ER + A+RA+F NPDRA+EYL I GI
Sbjct: 135 NDPSALLTGSQSEEVINQMMSMGFEREQINRAMRAAFFNPDRAIEYLLNLLISAFAIKGI 194
Query: 81 PAAVVGEE 88
P + E+
Sbjct: 195 PENIQQEQ 202
>gi|195504946|ref|XP_002099297.1| GE23445 [Drosophila yakuba]
gi|194185398|gb|EDW99009.1| GE23445 [Drosophila yakuba]
Length = 297
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
++V+ ++ MGY V ALRASFN+P+RA+EYLI GIP
Sbjct: 113 QLVRELMSMGYGEQDVRSALRASFNHPERAIEYLINGIP 151
>gi|222622818|gb|EEE56950.1| hypothetical protein OsJ_06656 [Oryza sativa Japonica Group]
Length = 242
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G VQ+I++MG ++R V AL A++NNP+RAVEYL TG+P
Sbjct: 162 GLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 217
>gi|47496878|dbj|BAD19842.1| RAD23 protein-like [Oryza sativa Japonica Group]
Length = 110
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G VQ+I++MG ++R V AL A++NNP+RAVEYL TG+P
Sbjct: 30 GLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 85
>gi|297721185|ref|NP_001172955.1| Os02g0465112 [Oryza sativa Japonica Group]
gi|255670888|dbj|BAH91684.1| Os02g0465112, partial [Oryza sativa Japonica Group]
Length = 92
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIP 81
G A S L+ G VQ+I++MG ++R V AL A++NNP+RAVEYL TG+P
Sbjct: 12 GLAASNLVAGSNLEGTVQSILEMGGGAWDRDTVMRALGAAYNNPERAVEYLYTGLP 67
>gi|194764815|ref|XP_001964524.1| GF23005 [Drosophila ananassae]
gi|190614796|gb|EDV30320.1| GF23005 [Drosophila ananassae]
Length = 318
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
V++++ MGY V ALRASFN+P+RA+EYLI+GIP
Sbjct: 135 VRDLMAMGYGEQEVRAALRASFNHPERAIEYLISGIP 171
>gi|356551713|ref|XP_003544218.1| PREDICTED: LOW QUALITY PROTEIN: putative DNA repair protein
RAD23-1-like [Glycine max]
Length = 254
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 23 ATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITG 79
T T G S ++G + +Q I+DMG ++R V+ ALRA+ NNP+ V+YL +G
Sbjct: 64 VTTNTYGLTASNXVVGSNLEKTIQQIMDMGGGSWDRDTVSHALRAAXNNPEHVVDYLYSG 123
Query: 80 IPAAV 84
IP V
Sbjct: 124 IPEVV 128
>gi|167522036|ref|XP_001745356.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776314|gb|EDQ89934.1| predicted protein [Monosiga brevicollis MX1]
Length = 320
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP---VAANEPQGNNI 101
V +++MG++R V ALR +F NPDRA EYL TG+PA EEAP +EP G
Sbjct: 122 VNRLMNMGFDRPQVEAALRRAFGNPDRAAEYLTTGMPA----EEAPSMDATPDEPAGGE- 176
Query: 102 KQFSSVKEIEIPNLMQGDNKVYTL 125
E +P + D+ +Y L
Sbjct: 177 ------GEAVVPQELSEDSPLYFL 194
>gi|313224970|emb|CBY20762.1| unnamed protein product [Oikopleura dioica]
Length = 352
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
V N++ MG+ S V +AL A+FNNP+RAVEYL+ GIP ++ +
Sbjct: 138 VANLMAMGFPESQVKQALSAAFNNPERAVEYLMNGIPEELLAQ 180
>gi|212535726|ref|XP_002148019.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
gi|210070418|gb|EEA24508.1| UV excision repair protein (RadW), putative [Talaromyces marneffei
ATCC 18224]
Length = 372
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
STP+ S A A + N S L MG + ++ + MG+ R+ + A+RA+F NP
Sbjct: 112 STPTPASSGAAAASGEAPAFNDPSALAMGTQGEAVISQMEAMGFPRADIDRAMRAAFFNP 171
Query: 70 DRAVEYLITGIPAAVVGE 87
DRAV+YL+ GIP + E
Sbjct: 172 DRAVDYLLNGIPENIEQE 189
>gi|242793918|ref|XP_002482264.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
gi|218718852|gb|EED18272.1| UV excision repair protein (RadW), putative [Talaromyces stipitatus
ATCC 10500]
Length = 375
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
N S L MG + ++ + MG+ R+ + A+RA+F NPDRAV+YL+ GIP + E+
Sbjct: 133 NDPSALAMGSQGEAVISQMEAMGFPRADIDRAMRAAFFNPDRAVDYLLNGIPENIQQEQ 191
>gi|358056787|dbj|GAA97450.1| hypothetical protein E5Q_04129 [Mixia osmundae IAM 14324]
Length = 434
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
TA + + L G + +V MG+ R A+RAS+NNP RAVEYL+ GIPA
Sbjct: 175 TAPAASDDPTAFLTGARLEASIAEMVSMGFPREDCQRAMRASYNNPHRAVEYLMNGIPA 233
>gi|68066300|ref|XP_675133.1| DNA repair protein RAD23 [Plasmodium berghei strain ANKA]
gi|56494136|emb|CAH99316.1| DNA repair protein RAD23, putative [Plasmodium berghei]
Length = 368
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
N ES LL GD+ + NI MG+ER V +A+ ++NNP+ A++YL G ++G+
Sbjct: 126 SNPESILLTGDKLKETIDNICAMGFERELVQKAMTLAYNNPNVAIDYLTNGF-QDIIGD 183
>gi|255943815|ref|XP_002562675.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587410|emb|CAP85444.1| Pc20g01150 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 380
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
S L MG V + MG+ R+ + A+RA+F NPDRA+EYL+TGIP
Sbjct: 140 SALTMGPAAEGAVVQMEAMGFARTDIDRAMRAAFYNPDRAIEYLLTGIP 188
>gi|194698296|gb|ACF83232.1| unknown [Zea mays]
gi|413926353|gb|AFW66285.1| hypothetical protein ZEAMMB73_839350 [Zea mays]
Length = 185
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 2 IGAPAAATSTPSTPVSQA---GATATA-TTPGNAESTLLMGDEYGRMVQNIVDMG---YE 54
+ AP A P P++ + G A A T NA S LL G ++ +++MG ++
Sbjct: 102 LEAPQQAPQPPVAPITTSQPEGLPAQAPNTHDNAASNLLSGRNVDTIINQLMEMGGGSWD 161
Query: 55 RSAVTEALRASFNNPDRAVEYL 76
+ V ALRA++NNP+RAVEYL
Sbjct: 162 KDKVQRALRAAYNNPERAVEYL 183
>gi|324513075|gb|ADY45389.1| UV excision repair protein RAD23 A [Ascaris suum]
Length = 348
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 10 STPSTPVSQAGATA-------TATTPGNAESTLL---------MGDEYGRMVQNIVDMGY 53
STP+TP + GA + TA G A+ + E VQ IV MGY
Sbjct: 89 STPATPAVEEGAASVPSTEAVTAAPTGTAQPAPQQASAAAPDALTPEQEETVQAIVAMGY 148
Query: 54 ERSAVTEALRASFNNPDRAVEYLITGIP 81
R V ALRA+F N DRAVEYL T IP
Sbjct: 149 PRDRVIRALRAAFFNGDRAVEYLCTEIP 176
>gi|212645665|ref|NP_496488.2| Protein RAD-23 [Caenorhabditis elegans]
gi|194686136|emb|CAA93780.2| Protein RAD-23 [Caenorhabditis elegans]
Length = 323
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEE 88
+ DE V I MGY+R ALRA+F NPDRAVE+L+ G+P +E
Sbjct: 125 LTDEQEENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGLPDDAADQE 176
>gi|425766442|gb|EKV05052.1| UV excision repair protein (RadW), putative [Penicillium digitatum
PHI26]
gi|425781661|gb|EKV19612.1| UV excision repair protein (RadW), putative [Penicillium digitatum
Pd1]
Length = 377
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
S L MG + MG+ R+ + A+RA+F NPDRA+EYL+TGIP
Sbjct: 139 SALTMGSAAEGAAAQMEAMGFARTDIDRAMRAAFYNPDRAIEYLLTGIP 187
>gi|238503490|ref|XP_002382978.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
gi|220690449|gb|EED46798.1| UV excision repair protein (RadW), putative [Aspergillus flavus
NRRL3357]
Length = 439
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LL G + ++ ++ MG+ R + A+RA+F NP RA+EYL+ GIP
Sbjct: 194 NDPSALLSGSQGEAVISHMESMGFPRDDINRAMRAAFFNPTRAIEYLLNGIP 245
>gi|317138690|ref|XP_001817078.2| UV excision repair protein rhp23 [Aspergillus oryzae RIB40]
gi|391863231|gb|EIT72542.1| nucleotide excision repair factor NEF2, RAD23 component
[Aspergillus oryzae 3.042]
Length = 378
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LL G + ++ ++ MG+ R + A+RA+F NP RA+EYL+ GIP
Sbjct: 133 NDPSALLSGSQGEAVISHMESMGFPRDDINRAMRAAFFNPTRAIEYLLNGIP 184
>gi|83033008|ref|XP_729289.1| DNA repair protein RAD23 [Plasmodium yoelii yoelii 17XNL]
gi|23486634|gb|EAA20854.1| putative DNA repair protein RAD23 [Plasmodium yoelii yoelii]
Length = 368
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
N ES LL GD+ + NI MG+ER V +A+ ++NNP+ A++YL G +
Sbjct: 126 SNPESILLTGDKLKETIDNICAMGFERELVQKAMTLAYNNPNVAIDYLTNGFQDII 181
>gi|83764932|dbj|BAE55076.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 403
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
N S LL G + ++ ++ MG+ R + A+RA+F NP RA+EYL+ GIP
Sbjct: 158 NDPSALLSGSQGEAVISHMESMGFPRDDINRAMRAAFFNPTRAIEYLLNGIP 209
>gi|340054316|emb|CCC48612.1| putative UV excision repair RAD23 protein, fragment, partial
[Trypanosoma vivax Y486]
Length = 299
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
++ +V MG+E R+ V ALRA++ N DRAVE+L +GIP+ V + PV ++ Q
Sbjct: 143 LIDTVVSMGFEDRTQVALALRAAYMNVDRAVEFLCSGIPSNVERDLGPVFHDDSQ 197
>gi|70930440|ref|XP_737130.1| DNA repair protein RAD23 [Plasmodium chabaudi chabaudi]
gi|56512258|emb|CAH84100.1| DNA repair protein RAD23, putative [Plasmodium chabaudi chabaudi]
Length = 243
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
N ES LL GD+ + NI MG+ER V +A+ ++NNP+ A++YL G
Sbjct: 2 SNPESILLTGDKLKEAIDNICAMGFERELVQKAMVLAYNNPNVAIDYLTNGF 53
>gi|156086838|ref|XP_001610826.1| DNA repair protein Rad23, putatitve [Babesia bovis T2Bo]
gi|154798079|gb|EDO07258.1| DNA repair protein Rad23, putatitve [Babesia bovis]
Length = 313
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGN-AESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
AP A T + V Q P N AESTL+ G E + I +MG+ R+ V A+
Sbjct: 90 APVADDRTKAVDVPQ---------PINLAESTLVTGSELEMNIARICEMGFPRAEVEAAM 140
Query: 63 RASFNNPDRAVEYLITG-IP 81
A+FNNPDRAVE+L TG IP
Sbjct: 141 AAAFNNPDRAVEFLTTGTIP 160
>gi|212274727|ref|NP_001130219.1| uncharacterized protein LOC100191313 [Zea mays]
gi|194688580|gb|ACF78374.1| unknown [Zea mays]
gi|414885363|tpg|DAA61377.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
gi|414885364|tpg|DAA61378.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 225
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYL 76
G A S L+ G +++I++MG ++R V ALRA++NNP+RAVEYL
Sbjct: 144 GQATSNLVAGSNLEGTIKSILEMGGGTWDRDTVLRALRAAYNNPERAVEYL 194
>gi|290999563|ref|XP_002682349.1| rad23 protein [Naegleria gruberi]
gi|284095976|gb|EFC49605.1| rad23 protein [Naegleria gruberi]
Length = 385
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
EY VQ ++MGY+R+ + E ++ASF + A E+LI+GIP V
Sbjct: 151 EYDETVQQFLEMGYDRNDIDECMKASFYDRATAAEFLISGIPENV 195
>gi|340504527|gb|EGR30961.1| uv excision repair protein rad23, putative [Ichthyophthirius
multifiliis]
Length = 423
Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 32/40 (80%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
E+ + V++I MG+E+S + +AL+A+FNN +RA+EYL+ G
Sbjct: 128 EFEQKVKDIEAMGFEKSKIIQALQAAFNNQERAIEYLLNG 167
>gi|72390575|ref|XP_845582.1| UV excision repair RAD23 protein [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62358793|gb|AAX79246.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei]
gi|70802117|gb|AAZ12023.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328991|emb|CBH11969.1| UV excision repair RAD23 protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 356
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 6 AAATSTP-STPVSQAGATATATT---PGNAESTLLMGDEYGRMVQNIVDMGY-ERSAVTE 60
A A+S P P A A ATT G A ++L D ++ +IV MG+ +R V+
Sbjct: 106 AGASSVPVDVPAPSPSAQAPATTQQPSGPAPASLRSVDPA--LIDSIVAMGFNDREQVSL 163
Query: 61 ALRASFNNPDRAVEYLITGIPAAV 84
ALRA++ N DRAVE+L TGIP V
Sbjct: 164 ALRAAYMNADRAVEFLCTGIPPHV 187
>gi|157872825|ref|XP_001684939.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
gi|68128009|emb|CAJ06783.1| UV excision repair RAD23-like protein [Leishmania major strain
Friedlin]
Length = 425
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
++ + MG+E RS + ALRA+F N +RAVEYL GIP+ +V E
Sbjct: 166 LIDEVASMGFEDRSQIALALRAAFMNVERAVEYLFEGIPSHLVEE 210
>gi|146094144|ref|XP_001467183.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
gi|134071547|emb|CAM70236.1| UV excision repair RAD23-like protein [Leishmania infantum JPCM5]
Length = 429
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAA 93
++ + MG+E R+ + ALRA+F N +RAVEYL GIP +V E P +A
Sbjct: 170 LIDEVASMGFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEELTPFSA 220
>gi|298707279|emb|CBJ25906.1| UV excision repair protein RAD23B homolog [Ectocarpus siliculosus]
Length = 466
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
V+ + +MG+ VT ALRA+ NPD AVE+L+TGIP
Sbjct: 119 VRQLTEMGFPEDQVTAALRAAMGNPDVAVEFLMTGIP 155
>gi|222064069|emb|CAQ86697.1| putative ubiquitin family protein (UBA/TS-N domain containing
protein) [Histomonas meleagridis]
Length = 257
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR 63
AP TP+ V+Q + T+ +A S + +V IVDMG+ ++ +ALR
Sbjct: 62 APQVQQPTPTISVTQPQHQTSHTSGSDALS-------FSDLVDQIVDMGFSKADAEKALR 114
Query: 64 ASFNNPDRAVEYLITG 79
+ NN RA+EYL++G
Sbjct: 115 KNHNNVTRAIEYLLSG 130
>gi|398019764|ref|XP_003863046.1| UV excision repair RAD23-like protein [Leishmania donovani]
gi|322501277|emb|CBZ36356.1| UV excision repair RAD23-like protein [Leishmania donovani]
Length = 429
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVA 92
++ + MG+E R+ + ALRA+F N +RAVEYL GIP +V E P +
Sbjct: 170 LIDEVASMGFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEELTPFS 219
>gi|339249469|ref|XP_003373722.1| putative UBA/TS-N domain protein [Trichinella spiralis]
gi|316970103|gb|EFV54095.1| putative UBA/TS-N domain protein [Trichinella spiralis]
Length = 521
Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 27/119 (22%)
Query: 10 STPSTPVS--QAGATATATTPGNAESTLLMGDEYGRM--------VQNIVDMGYERSAVT 59
S PST Q A A T G + +T+ D + M V + MG+ +S+V
Sbjct: 238 SQPSTEAKSIQRKAVQAANTAGASSNTVTANDRHETMELQLDDNLVNELCMMGFRKSSVV 297
Query: 60 EALRASFNNPDRAVEYLITGI--------------PAAVVGEEAPVAANEPQGNNIKQF 104
AL+ ++NNPD A++YL +G+ + VG++ NEP+ + I Q
Sbjct: 298 VALKMAYNNPDVAIDYLTSGVDLIRLKERIDNEIAQSRTVGQD---GGNEPEYDGIAQL 353
>gi|154342013|ref|XP_001566958.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064283|emb|CAM40483.1| UV excision repair RAD23-like protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 433
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
++ + MG+E R+ + ALRA+F N DRAVEYL GIP +V E
Sbjct: 174 LIDEVAAMGFEDRNQIALALRAAFMNVDRAVEYLFDGIPPHLVEE 218
>gi|414885366|tpg|DAA61380.1| TPA: hypothetical protein ZEAMMB73_350633 [Zea mays]
Length = 221
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 53 YERSAVTEALRASFNNPDRAVEYLITGIP 81
++R V ALRA++NNP+RAVEYL +GIP
Sbjct: 6 WDRDTVLRALRAAYNNPERAVEYLYSGIP 34
>gi|401425983|ref|XP_003877476.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493721|emb|CBZ29011.1| UV excision repair RAD23-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 429
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 44 MVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPAAVVGE 87
++ + MG+E R+ + ALRA+F N +RAVEYL GIP +V E
Sbjct: 170 LIDEVASMGFEDRNQIALALRAAFMNVERAVEYLFEGIPPHLVEE 214
>gi|116207852|ref|XP_001229735.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
gi|88183816|gb|EAQ91284.1| hypothetical protein CHGG_03219 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 8 ATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFN 67
A + P+TP A A P +A + L G++ + N+ MG+ER+ + A+RA+F
Sbjct: 112 AAAVPATPTPNRTAAPEAA-PNDA-NALATGEQRAEAIANMEAMGFERAQIDAAMRAAFY 169
Query: 68 NPDRAVEYLITGIP 81
NPDRA+ + GIP
Sbjct: 170 NPDRAL-TIHKGIP 182
>gi|328865495|gb|EGG13881.1| repC-binding protein A [Dictyostelium fasciculatum]
Length = 204
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 33 STLLMGDEYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITG 79
S+ ++G EY + N+++M G R V ALRASFNN +RA + L++G
Sbjct: 130 SSFIVGPEYEAAITNLMEMSGANREMVIRALRASFNNAERAADILLSG 177
>gi|414589472|tpg|DAA40043.1| TPA: hypothetical protein ZEAMMB73_722140 [Zea mays]
Length = 225
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 53 YERSAVTEALRASFNNPDRAVEYLITGIP 81
++R V ALR ++NNP+RAVEYL +GIP
Sbjct: 6 WDRDTVLRALRVAYNNPERAVEYLYSGIP 34
>gi|219112521|ref|XP_002178012.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217410897|gb|EEC50826.1| RAD23 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 434
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAAN 94
V N+ MG+ + V LRA+ NPD AVE+L GIP V EA A N
Sbjct: 130 VANLTSMGFPEAEVKHCLRAAHGNPDIAVEFLTNGIPEGVA--EAAAAMN 177
>gi|449676312|ref|XP_002169219.2| PREDICTED: UV excision repair protein RAD23 homolog B-like [Hydra
magnipapillata]
Length = 343
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPAAVVGEEAP 90
++ L G + ++ +G+ R V AL+ SF N DRA EYL++G +P V E+AP
Sbjct: 141 TSFLTGSALDSSINELMSLGFSREQVLRALQRSFQNADRAAEYLLSGNVPELV--EDAP 197
>gi|358346473|ref|XP_003637292.1| RAD23 protein [Medicago truncatula]
gi|355503227|gb|AES84430.1| RAD23 protein [Medicago truncatula]
Length = 213
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 53 YERSAVTEALRASFNNPDRAVEYLITGI 80
++R V ALRA+FNNP+RAV+YL +GI
Sbjct: 6 WDRDTVNRALRAAFNNPERAVDYLYSGI 33
>gi|123495684|ref|XP_001326794.1| Ubiquitin family protein [Trichomonas vaginalis G3]
gi|121909714|gb|EAY14571.1| Ubiquitin family protein [Trichomonas vaginalis G3]
Length = 330
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 8 ATSTPSTPVSQAGATATATTPG-NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASF 66
AT P P G + A P A+ L+ + +VQ + +MG+ ALRA+
Sbjct: 114 ATQKPEQP----GHSMVAPLPELEAKHQLVDPPNFNALVQTLTEMGFSEGDAAHALRAAV 169
Query: 67 NNPDRAVEYLITG 79
NPDRA E+L+T
Sbjct: 170 YNPDRAAEFLLTN 182
>gi|119473613|ref|XP_001258682.1| hypothetical protein NFIA_001330 [Neosartorya fischeri NRRL 181]
gi|119406835|gb|EAW16785.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
Length = 434
Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+V + MG+ R + A+RA+ NPDRAVEYL+ G P
Sbjct: 365 VVAQMESMGFARIDIDRAMRAASFNPDRAVEYLLNGFP 402
>gi|403370790|gb|EJY85262.1| Ubiquitin [Oxytricha trifallax]
Length = 411
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 52 GYERSAVTEALRASFNNPDRAVEYLITGI 80
G R ALRA+FNNPDRA EYL++G+
Sbjct: 144 GKPRDQCILALRAAFNNPDRAFEYLLSGV 172
>gi|402224143|gb|EJU04206.1| hypothetical protein DACRYDRAFT_20816 [Dacryopinax sp. DJM-731 SS1]
Length = 3687
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
VQ ++DMG+ RSAV ALR + NN A EYL+T P+A+ E A
Sbjct: 1251 VQQLIDMGFPRSAVERALRRTNNNVSAATEYLLTH-PSALQPEPA 1294
>gi|258644511|dbj|BAI39766.1| osRAD23-like [Oryza sativa Indica Group]
gi|258644734|dbj|BAI39979.1| osRAD23-like [Oryza sativa Indica Group]
Length = 88
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 53 YERSAVTEALRASFNNPDRAVEYLITGIP 81
++R V A RA++NNP+RA+EYL TG+P
Sbjct: 6 WDRDTVMSARRAAYNNPERAMEYLYTGVP 34
>gi|34015239|gb|AAQ56432.1| putative DNA repairing protein [Oryza sativa Japonica Group]
gi|35210523|dbj|BAC92639.1| unknown protein [Oryza sativa Japonica Group]
gi|35215224|dbj|BAC92575.1| unknown protein [Oryza sativa Japonica Group]
Length = 88
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 53 YERSAVTEALRASFNNPDRAVEYLITGIP 81
++R V A RA++NNP+RA+EYL TG+P
Sbjct: 6 WDRDTVMSARRAAYNNPERAMEYLYTGVP 34
>gi|70985775|ref|XP_748393.1| DUF500 and UBA/TS-N domain protein [Aspergillus fumigatus Af293]
gi|66846022|gb|EAL86355.1| DUF500 and UBA/TS-N domain protein [Aspergillus fumigatus Af293]
Length = 455
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEP 96
++ + MG+ R + A+RA+ NPDRAVEYL+ G P +E P +P
Sbjct: 386 VIAQMESMGFARIDIDRAMRAASFNPDRAVEYLLNGFP----DDEHPEQQQQP 434
>gi|159128472|gb|EDP53587.1| DUF500 and UBA/TS-N domain protein [Aspergillus fumigatus A1163]
Length = 455
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEP 96
++ + MG+ R + A+RA+ NPDRAVEYL+ G P +E P +P
Sbjct: 386 VIAQMESMGFARIDIDRAMRAASFNPDRAVEYLLNGFP----DDEHPEQQQQP 434
>gi|407416607|gb|EKF37719.1| UV excision repair RAD23-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 300
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 5/39 (12%)
Query: 61 ALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGN 99
ALRA++ NPDRAVE+L TGIP+ V+ NEP N
Sbjct: 111 ALRAAYMNPDRAVEFLCTGIPSDVMQR-----MNEPAIN 144
>gi|123449699|ref|XP_001313566.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121895454|gb|EAY00637.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 569
Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
E+ +V N+ +MG+ER ALR NP+RAV L++G
Sbjct: 449 EFSELVSNLTEMGFERKYSENALRRCNYNPERAVNLLMSG 488
>gi|357501513|ref|XP_003621045.1| RAD23-like protein [Medicago truncatula]
gi|355496060|gb|AES77263.1| RAD23-like protein [Medicago truncatula]
Length = 142
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 2 IGAPAAATSTPSTPVSQAGATATAT-TPGNAESTLLMGDEYGRMVQNIVDMGYE--RSAV 58
+ AP+ P Q A+ T G AES L+ G +Q I D+G + R V
Sbjct: 35 LSAPSKKAIRPKARHPQGAASRMLLGTYGKAESNLIAGSTLEPTIQQI-DIGRKLVRDIV 93
Query: 59 TEALRASFNNPDRAVEYL 76
AL A++NNP+R VEYL
Sbjct: 94 IRALSAAYNNPERTVEYL 111
>gi|195627118|gb|ACG35389.1| rhomboid family protein [Zea mays]
Length = 396
Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+TPS P++ TA T +A T D + ++ +V MG+E++ AL A+ +P
Sbjct: 325 TTPSDPLTNTQHTAVNTVRADATVTAEQVDTFDEELKKLVGMGFEKTQAEVALAAADGDP 384
Query: 70 DRAVEYLIT 78
+ A+E L++
Sbjct: 385 NVAIEILMS 393
>gi|223942663|gb|ACN25415.1| unknown [Zea mays]
gi|414872103|tpg|DAA50660.1| TPA: rhomboid family protein [Zea mays]
Length = 396
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+TPS P++ TA T +A T D + ++ +V MG+E++ AL A+ +P
Sbjct: 325 TTPSDPLTNTQHTAVNTVRADATVTAEQVDTFDEELKKLVGMGFEKTQAEVALAAADGDP 384
Query: 70 DRAVEYLIT 78
+ A+E L++
Sbjct: 385 NVAIEILMS 393
>gi|392572684|gb|EIW65829.1| hypothetical protein TREMEDRAFT_72540 [Tremella mesenterica DSM
1558]
Length = 802
Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P++ AG ++ A P + + M I +MG+ + +ALR S N +RA+E
Sbjct: 646 PLANAGVSSVAGGPEPSAEQIAM----------IAEMGFTSAQARKALRQSDGNAERAIE 695
Query: 75 YLITGIPAAVVGEEAPVAANEPQ 97
+L + GEEAP++ + PQ
Sbjct: 696 WLFSN--PTDPGEEAPLSGSIPQ 716
>gi|303282649|ref|XP_003060616.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458087|gb|EEH55385.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 363
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQ 97
+VQ +++MG+ R V ALRA+ NN D A +L+ G + VV E+ VA P+
Sbjct: 243 VVQRVMEMGFPREDVLVALRATHNNHDAACAWLL-GERSGVVREQMTVAQGNPE 295
>gi|157126297|ref|XP_001654581.1| uv excision repair protein rad23 [Aedes aegypti]
gi|108882553|gb|EAT46778.1| AAEL002077-PA [Aedes aegypti]
Length = 347
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%)
Query: 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
D+ VQ I +MGY AL NNPDRAVEYL++ I
Sbjct: 147 DDIQIKVQRITEMGYSLEEARIALEICDNNPDRAVEYLLSEI 188
>gi|326427437|gb|EGD73007.1| hypothetical protein PTSG_04716 [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+ + MG++R+ AL A+F N +RAVEYL GIP
Sbjct: 133 LNTLTAMGFDRAQAERALSAAFGNIERAVEYLQNGIP 169
>gi|378948982|ref|YP_005206470.1| tetratricopeptide-like helical domain-containing protein
[Pseudomonas fluorescens F113]
gi|359758996|gb|AEV61075.1| tetratricopeptide-like helical domain-containing protein
[Pseudomonas fluorescens F113]
Length = 659
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ A + S+ STPVS A A A PG +E + + D YGR +Q I + +
Sbjct: 5 ILSALSGKKSSTSTPVSSAHADAPPPQPGESE-LITVYDSYGREMQ-ITRNEWRNNVFLP 62
Query: 61 ALRASFNNPDRAVEYLITGIPAAVVGEEAPVAAN 94
LR +N+ D +I+G+ V + P AA
Sbjct: 63 NLREKWNSADELYSLIISGLNDGFVADLIPAAAQ 96
>gi|58268410|ref|XP_571361.1| ubiquitin carboxyl-terminal hydrolase 14 [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227596|gb|AAW44054.1| ubiquitin carboxyl-terminal hydrolase 14, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 796
Score = 39.3 bits (90), Expect = 0.53, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+ G+ A + P + + I DMG+ + +ALR S NP+RA+E
Sbjct: 646 PIELGGSKAASNEPSQEQ------------IGMIADMGFSHNQARKALRESDGNPERAIE 693
Query: 75 YLITGIPAAVVGEEAPVAANEP 96
+L + P + AP + EP
Sbjct: 694 WLFSN-PGDPGEDAAPAGSAEP 714
>gi|134112996|ref|XP_775041.1| hypothetical protein CNBF2040 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257689|gb|EAL20394.1| hypothetical protein CNBF2040 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 796
Score = 39.3 bits (90), Expect = 0.56, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+ G+ A + P + + I DMG+ + +ALR S NP+RA+E
Sbjct: 646 PIELGGSKAASNEPSQEQ------------IGMIADMGFSHNQARKALRESDGNPERAIE 693
Query: 75 YLITGIPAAVVGEEAPVAANEP 96
+L + P + AP + EP
Sbjct: 694 WLFSN-PGDPGEDAAPAGSAEP 714
>gi|58268412|ref|XP_571362.1| ubiquitin carboxyl-terminal hydrolase 14 [Cryptococcus neoformans
var. neoformans JEC21]
gi|57227597|gb|AAW44055.1| ubiquitin carboxyl-terminal hydrolase 14, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 725
Score = 38.9 bits (89), Expect = 0.65, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+ G+ A + P + + I DMG+ + +ALR S NP+RA+E
Sbjct: 575 PIELGGSKAASNEPSQEQ------------IGMIADMGFSHNQARKALRESDGNPERAIE 622
Query: 75 YLITGIPAAVVGEEAPVAANEP 96
+L + P + AP + EP
Sbjct: 623 WLFSN-PGDPGEDAAPAGSAEP 643
>gi|405121257|gb|AFR96026.1| ubiquitin carboxyl-terminal hydrolase 14 [Cryptococcus neoformans
var. grubii H99]
Length = 788
Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+ G+ A + P + + I DMG+ + +ALR S NP+RA+E
Sbjct: 638 PIVLGGSKAASNEPSQEQ------------IGMIADMGFSHNQARKALRESDGNPERAIE 685
Query: 75 YLITGIPAAVVGEEAPVAANEP 96
+L + P + AP + EP
Sbjct: 686 WLFSN-PDDAGEDPAPAGSAEP 706
>gi|326500926|dbj|BAJ95129.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 401
Score = 38.5 bits (88), Expect = 0.93, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
STPS ++ + A T +A T D + ++ +V MG+ER+ AL A+ +P
Sbjct: 330 STPSDLLTNSQHAAANTVRADATVTADQTDTFDEELKKLVGMGFERTQAEVALAAADGDP 389
Query: 70 DRAVEYLIT 78
+ A+E L++
Sbjct: 390 NVAIEILMS 398
>gi|357119970|ref|XP_003561705.1| PREDICTED: uncharacterized protein At3g58460-like [Brachypodium
distachyon]
Length = 403
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+TPS P++ + TA T +A T D + ++ +V MG+E++ AL A+ +
Sbjct: 332 TTPSDPLTNSQLTAANTVRADATVTTDQPDTFDEELKKLVGMGFEKTQAEVALAAADGDT 391
Query: 70 DRAVEYLIT 78
+ A+E L++
Sbjct: 392 NVAIEILMS 400
>gi|299117286|emb|CBN75246.1| rad23b protein [Ectocarpus siliculosus]
Length = 341
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
V+ + MG+ T ALRA+FN+ RA YL+ GIP
Sbjct: 82 VEMLTAMGFPEDQATAALRAAFNDVSRAASYLMEGIP 118
>gi|62733420|gb|AAX95537.1| Putative Rhomboid family protein [Oryza sativa Japonica Group]
Length = 393
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
++TPS P++ + A T +A D + ++ +V MG+E++ AL A+ +
Sbjct: 321 STTPSDPLTSSQHPAANTVRADATVAADQVDTFDEELKKLVGMGFEKTQAEVALAAADGD 380
Query: 69 PDRAVEYLIT 78
P+ A+E L++
Sbjct: 381 PNVAIEILMS 390
>gi|31712095|gb|AAP68399.1| unknown protein [Oryza sativa Japonica Group]
gi|108710126|gb|ABF97921.1| expressed protein [Oryza sativa Japonica Group]
gi|218193411|gb|EEC75838.1| hypothetical protein OsI_12827 [Oryza sativa Indica Group]
gi|222625474|gb|EEE59606.1| hypothetical protein OsJ_11927 [Oryza sativa Japonica Group]
Length = 399
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 38/70 (54%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
++TPS P++ + A T +A D + ++ +V MG+E++ AL A+ +
Sbjct: 327 STTPSDPLTSSQHPAANTVRADATVAADQVDTFDEELKKLVGMGFEKTQAEVALAAADGD 386
Query: 69 PDRAVEYLIT 78
P+ A+E L++
Sbjct: 387 PNVAIEILMS 396
>gi|148229816|ref|NP_001087432.1| ubiquitin specific peptidase 5 (isopeptidase T) [Xenopus laevis]
gi|50927226|gb|AAH79778.1| MGC86287 protein [Xenopus laevis]
Length = 855
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+S A A +A+T G+ S +E+ V I+ MG+ + +ALRA+ NN +RAV+
Sbjct: 702 PMSGASAPLSASTGGDPPS-----EEH---VATIISMGFSQEQAVKALRATNNNLERAVD 753
Query: 75 YLITGI 80
++ + I
Sbjct: 754 WIFSHI 759
>gi|183986733|ref|NP_001116956.1| ubiquitin specific peptidase 5 [Xenopus (Silurana) tropicalis]
gi|170285226|gb|AAI61109.1| usp5 protein [Xenopus (Silurana) tropicalis]
Length = 832
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+S A A ++ TT G+ S V I+ MG+ + +ALRA+ NN +RAV+
Sbjct: 679 PLSGASAPSSVTTGGDPPSE--------EHVATIISMGFSQEQAVKALRATNNNLERAVD 730
Query: 75 YLITGI 80
++ + I
Sbjct: 731 WIFSHI 736
>gi|194908507|ref|XP_001981782.1| GG11412 [Drosophila erecta]
gi|190656420|gb|EDV53652.1| GG11412 [Drosophila erecta]
Length = 614
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
R V +++MGYERS V EAL+ + NN DR+++ L
Sbjct: 425 RSVCRLMEMGYERSLVVEALKRTKNNLDRSLDLL 458
>gi|344233400|gb|EGV65272.1| hypothetical protein CANTEDRAFT_133580 [Candida tenuis ATCC 10573]
Length = 1311
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 12/76 (15%)
Query: 2 IGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEA 61
G +A +TPS PV + A A + P N +VQ +V MG++ S TEA
Sbjct: 1245 FGNSQSAQNTPSQPVVNSFAPAAVSEPTN------------ELVQELVGMGFDESTATEA 1292
Query: 62 LRASFNNPDRAVEYLI 77
L+ N + A YL+
Sbjct: 1293 LQKEGWNLEAATNYLL 1308
>gi|193671584|ref|XP_001952484.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like
[Acyrthosiphon pisum]
Length = 813
Score = 37.4 bits (85), Expect = 2.0, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 28 PGNA-ESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVG 86
PG S L +E M I+ MG+ER+ V AL+A+ NN DRA++++++ P ++
Sbjct: 677 PGTKINSEFLPNEEAAAM---IMSMGFERNHVIAALKATENNLDRALDWIMSHGPEEILP 733
Query: 87 EE 88
E
Sbjct: 734 AE 735
>gi|365222920|gb|AEW69812.1| Hop-interacting protein THI111 [Solanum lycopersicum]
Length = 407
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 4 APAAATSTPSTPVSQAGATATATTP-GNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
A A+++ +T + T +P G+A L G E+ V +V++G+ R AV +AL
Sbjct: 331 AEASSSGAQATSGATGKTDPTKGSPSGSAGGNLTQGPEFEAKVAKLVELGFGREAVVQAL 390
Query: 63 RASFNNPDRAVEYLITG 79
+ N ++A YL G
Sbjct: 391 KFFDGNEEQAAGYLFGG 407
>gi|36939185|gb|AAQ86957.1| isopeptidase T [Xenopus laevis]
Length = 854
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+S A A ++ +T G+ S +E+ V I+ MG+ + +ALRA+ NN +RAV+
Sbjct: 701 PLSGASAPSSVSTGGDPPS-----EEH---VATIISMGFSQDQAVKALRATNNNLERAVD 752
Query: 75 YLITGI 80
++ + I
Sbjct: 753 WIFSHI 758
>gi|123456912|ref|XP_001316188.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121898887|gb|EAY03965.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 250
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG---IPAAVVG 86
DE+ R V+ +V+MG+ + +ALR + NN D A+ L++ IP ++
Sbjct: 115 SDEFNRDVKALVEMGFTKEQAIQALRTTGNNLDSAISLLVSENAPIPEEILA 166
>gi|344241798|gb|EGV97901.1| Trinucleotide repeat-containing gene 6C protein [Cricetulus
griseus]
Length = 802
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+ L
Sbjct: 35 SKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSAL 90
Query: 77 I 77
+
Sbjct: 91 L 91
>gi|224028831|gb|ACN33491.1| unknown [Zea mays]
gi|414872104|tpg|DAA50661.1| TPA: hypothetical protein ZEAMMB73_465757 [Zea mays]
Length = 195
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
+TPS P++ TA T +A T D + ++ +V MG+E++ AL A+ +P
Sbjct: 124 TTPSDPLTNTQHTAVNTVRADATVTAEQVDTFDEELKKLVGMGFEKTQAEVALAAADGDP 183
Query: 70 DRAVEYLIT 78
+ A+E L++
Sbjct: 184 NVAIEILMS 192
>gi|298710816|emb|CBJ32231.1| expressed unknown protein [Ectocarpus siliculosus]
Length = 278
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
VQ + DMG+ A ALRAS + + A EY +TGIP
Sbjct: 128 VQALQDMGFAEDAARLALRASGYDTNLAAEYCVTGIP 164
>gi|28972790|dbj|BAC65811.1| mKIAA1582 protein [Mus musculus]
Length = 1362
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 586 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 641
Query: 76 LI 77
L+
Sbjct: 642 LL 643
>gi|170052429|ref|XP_001862218.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167873373|gb|EDS36756.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 399
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
MV IV+MG+E +V EAL A+ NN A E+L+
Sbjct: 272 MVATIVEMGFEEKSVREALVATRNNQSAACEWLL 305
>gi|124378035|ref|NP_932139.2| trinucleotide repeat-containing gene 6C protein [Mus musculus]
Length = 1900
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 1124 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 1179
Query: 76 LI 77
L+
Sbjct: 1180 LL 1181
>gi|74184652|dbj|BAE27937.1| unnamed protein product [Mus musculus]
Length = 1900
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 1124 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 1179
Query: 76 LI 77
L+
Sbjct: 1180 LL 1181
>gi|392332214|ref|XP_003752510.1| PREDICTED: trinucleotide repeat-containing gene 6C protein-like
[Rattus norvegicus]
Length = 1815
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 1143 ASKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 1198
Query: 76 LI 77
L+
Sbjct: 1199 LL 1200
>gi|392351792|ref|XP_003751024.1| PREDICTED: trinucleotide repeat-containing gene 6C protein-like
[Rattus norvegicus]
Length = 1919
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 1143 ASKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 1198
Query: 76 LI 77
L+
Sbjct: 1199 LL 1200
>gi|148226618|ref|NP_001083082.1| ubiquitin specific peptidase 5 [Xenopus laevis]
gi|117167935|gb|AAI24864.1| IsoT protein [Xenopus laevis]
Length = 832
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 15 PVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE 74
P+S A A ++ +T G+ S V I+ MG+ + +ALRA+ NN +RAV+
Sbjct: 679 PLSGASAPSSVSTGGDPPSE--------EHVATIISMGFSQDQAVKALRATNNNLERAVD 730
Query: 75 YLITGI 80
++ + I
Sbjct: 731 WIFSHI 736
>gi|126253814|sp|Q3UHC0.2|TNR6C_MOUSE RecName: Full=Trinucleotide repeat-containing gene 6C protein
Length = 1690
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 914 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 969
Query: 76 LI 77
L+
Sbjct: 970 LL 971
>gi|354473299|ref|XP_003498873.1| PREDICTED: trinucleotide repeat-containing gene 6C protein-like
[Cricetulus griseus]
Length = 1888
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 1112 ASKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 1167
Query: 76 LI 77
L+
Sbjct: 1168 LL 1169
>gi|148702675|gb|EDL34622.1| mCG19297, isoform CRA_b [Mus musculus]
Length = 1630
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 914 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 969
Query: 76 LI 77
L+
Sbjct: 970 LL 971
>gi|118095275|ref|XP_426842.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13 [Gallus gallus]
gi|391359351|sp|E1BY77.1|UBP13_CHICK RecName: Full=Ubiquitin carboxyl-terminal hydrolase 13; AltName:
Full=Deubiquitinating enzyme 13; AltName: Full=Ubiquitin
thioesterase 13; AltName:
Full=Ubiquitin-specific-processing protease 13
Length = 862
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
MV I+ MG++RS +AL+A+ NN +RA+E++ +
Sbjct: 727 MVSIIISMGFQRSLAIQALKATNNNLERALEWIFS 761
>gi|148702674|gb|EDL34621.1| mCG19297, isoform CRA_a [Mus musculus]
Length = 1580
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 914 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 969
Query: 76 LI 77
L+
Sbjct: 970 LL 971
>gi|449444008|ref|XP_004139767.1| PREDICTED: DNA damage-inducible protein 1-like [Cucumis sativus]
Length = 407
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
GAP A++ T ++ ++A A ATA G A G E+ V +V++G++R AV +AL
Sbjct: 337 GAPVASSPTENSRNARA-AQATAGNVGGAAQ----GPEFEAKVAKLVELGFQREAVIQAL 391
Query: 63 RASFNNPDRAVEYLI 77
+ N ++A +L
Sbjct: 392 KLFDGNEEQAAGFLF 406
>gi|326926123|ref|XP_003209254.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal
hydrolase 13-like [Meleagris gallopavo]
Length = 837
Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
MV I+ MG++RS +AL+A+ NN +RA+E++
Sbjct: 702 MVSIIISMGFQRSLAIQALKATNNNLERALEWI 734
>gi|449508333|ref|XP_004163284.1| PREDICTED: DNA damage-inducible protein 1-like [Cucumis sativus]
Length = 407
Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
GAP A++ T ++ ++A A ATA G A G E+ V +V++G++R AV +AL
Sbjct: 337 GAPVASSPTENSRNARA-AQATAGNVGGAAQ----GPEFEAKVAKLVELGFQREAVIQAL 391
Query: 63 RASFNNPDRAVEYLI 77
+ N ++A +L
Sbjct: 392 KLFDGNEEQAAGFLF 406
>gi|149054907|gb|EDM06724.1| rCG34629 [Rattus norvegicus]
Length = 659
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 575 ASKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 630
Query: 76 LI 77
L+
Sbjct: 631 LL 632
>gi|123483421|ref|XP_001324021.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
gi|121906897|gb|EAY11798.1| UBA/TS-N domain containing protein [Trichomonas vaginalis G3]
Length = 374
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
D MV+ +++ G+ + +V ALR + NP++AV+YL+ G
Sbjct: 128 DNMDDMVKKLMEAGFAKDSVIRALRKNDYNPEQAVDYLLNG 168
>gi|427789883|gb|JAA60393.1| Putative conserved plasma membrane protein [Rhipicephalus
pulchellus]
Length = 357
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
VQ +VDMG+ER V ALR S N+ A YL+
Sbjct: 322 VQTLVDMGFERQNVVRALRNSNNDVHLATTYLL 354
>gi|195555340|ref|XP_002077081.1| GD24855 [Drosophila simulans]
gi|194203099|gb|EDX16675.1| GD24855 [Drosophila simulans]
Length = 174
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 12 PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDR 71
P +P + AGA A + + + +E MV+ I+DMGY AL S NN R
Sbjct: 9 PKSPPATAGAGAGSPQAAASVAVAADANETELMVKVIMDMGYPEGEARLALAQSNNNVQR 68
Query: 72 AVEYLITGI 80
AV+ L+ G+
Sbjct: 69 AVQILVEGM 77
>gi|195345487|ref|XP_002039300.1| GM22904 [Drosophila sechellia]
gi|194134526|gb|EDW56042.1| GM22904 [Drosophila sechellia]
Length = 174
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 12 PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDR 71
P +P + AGA A + + + +E MV+ I+DMGY AL S NN R
Sbjct: 9 PKSPPATAGAGAGSPQAAASVAVAADANETELMVKVIMDMGYPEGEARLALAQSNNNVQR 68
Query: 72 AVEYLITGI 80
AV+ L+ G+
Sbjct: 69 AVQILVEGM 77
>gi|410921606|ref|XP_003974274.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform 2
[Takifugu rubripes]
Length = 864
Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P+ S PST S GAT P ES + + MG+ R+ AL+A
Sbjct: 692 PSLMDSAPSTSDSVMGATPLDPNPPPEES-----------ISILTSMGFPRTHSINALKA 740
Query: 65 SFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSS 106
NN +RA++++ T + +A EP N +S
Sbjct: 741 MNNNLERALDWIFTHPEPEESDALSDMADTEPNDNAFSNANS 782
>gi|298712615|emb|CBJ33311.1| OTU-like cysteine protease [Ectocarpus siliculosus]
Length = 395
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAV 84
+VQ++VDMG+E+ +AL + + + AVE ++G PAA+
Sbjct: 140 LVQSLVDMGFEQGFAAKALEVAGGDINTAVEICMSGDPAAL 180
>gi|410921604|ref|XP_003974273.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like isoform 1
[Takifugu rubripes]
Length = 864
Score = 35.8 bits (81), Expect = 5.7, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 5 PAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRA 64
P+ S PST S GAT P ES + + MG+ R+ AL+A
Sbjct: 692 PSLMDSAPSTSDSVMGATPLDPNPPPEES-----------ISILTSMGFPRTHSINALKA 740
Query: 65 SFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSS 106
NN +RA++++ T + +A EP N +S
Sbjct: 741 MNNNLERALDWIFTHPEPEESDALSDMADTEPNDNAFSNANS 782
>gi|389759672|ref|ZP_10191837.1| putative LysM peptidoglycan degradation protein [Rhodanobacter
sp. 115]
gi|388430259|gb|EIL87446.1| putative LysM peptidoglycan degradation protein [Rhodanobacter
sp. 115]
Length = 80
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 9 TSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN 68
TS P Q GA++TA T++ GD ++ +++ E + +A R +N
Sbjct: 5 TSKPDFSDVQGGASSTAPDAAAQTYTVVSGDNLSKIAKHVYGNANEWHRIFDANRDQLDN 64
Query: 69 PDRAVEYLITGIPA 82
PDR + IPA
Sbjct: 65 PDRIAPGQVLKIPA 78
>gi|384490670|gb|EIE81892.1| hypothetical protein RO3G_06597 [Rhizopus delemar RA 99-880]
Length = 3310
Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEA 89
+Q +V+MG+ER + +AL N RAV+YL + P V+G A
Sbjct: 934 IQMLVEMGFERGSAEQALVRCNNQVSRAVDYLFSH-PTPVIGNAA 977
>gi|195504309|ref|XP_002099023.1| GE23608 [Drosophila yakuba]
gi|194185124|gb|EDW98735.1| GE23608 [Drosophila yakuba]
Length = 614
Score = 35.4 bits (80), Expect = 6.7, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
R V +++MGYER V EAL+ + NN DR+++ L
Sbjct: 425 RSVCRLMEMGYERCLVVEALKRTKNNLDRSLDLL 458
>gi|405970336|gb|EKC35250.1| Ubiquitin-associated domain-containing protein 1 [Crassostrea
gigas]
Length = 432
Score = 35.4 bits (80), Expect = 7.2, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 2 IGAPAAATSTPSTPVSQAGATATA-TTPGNAESTLLMG-DEYGR--------MVQNIVDM 51
I P TST + G + TT G+ + +L EY R ++QN+++M
Sbjct: 266 IDEPLPGTSTSKEEGAVGGREENSFTTNGHQTTNILQSLREYRRREFKPNHTVLQNLIEM 325
Query: 52 GYERSAVTEALRASFNNPDRAVEYLI 77
G++ EALR S NN + A E+L+
Sbjct: 326 GFDEKDALEALRISRNNQNDACEWLL 351
>gi|195152433|ref|XP_002017141.1| GL22144 [Drosophila persimilis]
gi|194112198|gb|EDW34241.1| GL22144 [Drosophila persimilis]
Length = 597
Score = 35.4 bits (80), Expect = 7.5, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
R V ++DMGYE+ V EALR + N+ DR+++ L
Sbjct: 422 RSVCRLMDMGYEQQLVVEALRRTKNHLDRSIDLL 455
>gi|395538616|ref|XP_003771272.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform 2
[Sarcophilus harrisii]
Length = 834
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
S G+T+T P + + V IV MG+ R +ALRA+ NN +RAV+++
Sbjct: 687 SGPGSTSTVADPPSEDC-----------VATIVSMGFSRDQAMKALRATNNNLERAVDWI 735
Query: 77 ITGI 80
+ I
Sbjct: 736 FSHI 739
>gi|395538614|ref|XP_003771271.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform 1
[Sarcophilus harrisii]
Length = 857
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
S G+T+T P + + V IV MG+ R +ALRA+ NN +RAV+++
Sbjct: 710 SGPGSTSTVADPPSEDC-----------VATIVSMGFSRDQAMKALRATNNNLERAVDWI 758
Query: 77 ITGI 80
+ I
Sbjct: 759 FSHI 762
>gi|334348296|ref|XP_001370137.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like
[Monodelphis domestica]
Length = 857
Score = 35.4 bits (80), Expect = 8.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 17 SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
S G+T+T P + + V IV MG+ R +ALRA+ NN +RAV+++
Sbjct: 710 SGPGSTSTVADPPSEDC-----------VATIVSMGFSRDQAMKALRATNNNLERAVDWI 758
Query: 77 ITGI 80
+ I
Sbjct: 759 FSHI 762
>gi|347964389|ref|XP_311268.5| AGAP000733-PA [Anopheles gambiae str. PEST]
gi|333467508|gb|EAA06820.6| AGAP000733-PA [Anopheles gambiae str. PEST]
Length = 390
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
+Q + +MGY + AL N PDRAVEYL++
Sbjct: 181 IQRLTEMGYPEQSARLALEICANIPDRAVEYLLS 214
>gi|330807669|ref|YP_004352131.1| hypothetical protein PSEBR_a958 [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375777|gb|AEA67127.1| Conserved Hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 661
Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ A + S+ STPVS A A P +E + + D YGR +Q I + +
Sbjct: 5 ILSALSGKKSSTSTPVSSAHTDAPPPQPDESE-LITVYDSYGREMQ-ITRNEWRNNVFLP 62
Query: 61 ALRASFNNPDRAVEYLITGIPAAVVGEEAPVAAN 94
LR +N+ D +I+G+ V + P AA
Sbjct: 63 NLREKWNSADELYSLIISGLNDGFVADLIPAAAQ 96
>gi|423695477|ref|ZP_17669967.1| hypothetical protein PflQ8_0996 [Pseudomonas fluorescens Q8r1-96]
gi|388009145|gb|EIK70396.1| hypothetical protein PflQ8_0996 [Pseudomonas fluorescens Q8r1-96]
Length = 661
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ A + S+ STPVS A A P +E + + D YGR +Q I + +
Sbjct: 5 ILSALSGKKSSTSTPVSSAHTDAPPPQPDESE-LITVYDSYGREMQ-ITRNEWRNNVFLP 62
Query: 61 ALRASFNNPDRAVEYLITGIPAAVVGEEAPVAAN 94
LR +N+ D +I+G+ V + P AA
Sbjct: 63 NLREKWNSADELYSLIISGLNDGFVADLIPAAAQ 96
>gi|224003975|ref|XP_002291659.1| Rad23 like protein [Thalassiosira pseudonana CCMP1335]
gi|220973435|gb|EED91766.1| Rad23 like protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 335
Score = 35.0 bits (79), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 39 DEY-GRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
DE+ ++ N+ +G+ S V LRAS NPD AVE+L+
Sbjct: 145 DEFPAEVIDNLKALGFPESEVRVCLRASNGNPDVAVEFLM 184
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.124 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,962,835,560
Number of Sequences: 23463169
Number of extensions: 73373783
Number of successful extensions: 326269
Number of sequences better than 100.0: 735
Number of HSP's better than 100.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 324947
Number of HSP's gapped (non-prelim): 1272
length of query: 129
length of database: 8,064,228,071
effective HSP length: 95
effective length of query: 34
effective length of database: 10,130,194,312
effective search space: 344426606608
effective search space used: 344426606608
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 71 (32.0 bits)