BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4260
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74803|RHP23_SCHPO UV excision repair protein rhp23 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rhp23 PE=1 SV=1
Length = 368
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 8/83 (9%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
AAA S P T TAT+ P +A +TL +G + V+N+V+MGYERS V A+RA+
Sbjct: 120 AAAPSNPDT-------TATSEAPIDA-NTLAVGAQRNVAVENMVEMGYERSEVERAMRAA 171
Query: 66 FNNPDRAVEYLITGIPAAVVGEE 88
FNNPDRAVEYL+TGIP ++ +
Sbjct: 172 FNNPDRAVEYLLTGIPEDILNRQ 194
>sp|P54728|RD23B_MOUSE UV excision repair protein RAD23 homolog B OS=Mus musculus
GN=Rad23b PE=1 SV=2
Length = 416
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 50/94 (53%), Gaps = 17/94 (18%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNAEST----------------LLMGDEYGRMVQN 47
APA AT P P + T T+P A+ST L+ G Y MV
Sbjct: 138 APAGATQ-PEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTE 196
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 197 IMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>sp|Q4KMA2|RD23B_RAT UV excision repair protein RAD23 homolog B OS=Rattus norvegicus
GN=Rad23b PE=1 SV=1
Length = 415
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 50/81 (61%), Gaps = 7/81 (8%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++ +PA A STP G ++ + +A S L+ G Y MV I+ MGYER V
Sbjct: 157 VLTSPAPADSTP-------GDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIA 209
Query: 61 ALRASFNNPDRAVEYLITGIP 81
ALRASFNNPDRAVEYL+ GIP
Sbjct: 210 ALRASFNNPDRAVEYLLMGIP 230
>sp|P54727|RD23B_HUMAN UV excision repair protein RAD23 homolog B OS=Homo sapiens
GN=RAD23B PE=1 SV=1
Length = 409
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
++P+ S +G ++ + +A S L+ G Y MV I+ MGYER V ALRASFNNP
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNP 218
Query: 70 DRAVEYLITGIP 81
DRAVEYL+ GIP
Sbjct: 219 DRAVEYLLMGIP 230
>sp|A3KMV2|RD23A_BOVIN UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A
PE=2 SV=1
Length = 362
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ + +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSGGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>sp|P54725|RD23A_HUMAN UV excision repair protein RAD23 homolog A OS=Homo sapiens
GN=RAD23A PE=1 SV=1
Length = 363
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRAS 65
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V ALRAS
Sbjct: 128 SAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRAS 187
Query: 66 FNNPDRAVEYLITGIPAA 83
+NNP RAVEYL+TGIP +
Sbjct: 188 YNNPHRAVEYLLTGIPGS 205
>sp|P54726|RD23A_MOUSE UV excision repair protein RAD23 homolog A OS=Mus musculus
GN=Rad23a PE=1 SV=2
Length = 363
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A STL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP +
Sbjct: 152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGS 205
>sp|Q29RK4|RD23B_BOVIN UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B
PE=2 SV=1
Length = 408
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 37/52 (71%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
+A S L+ G Y MV I+ MGYER V ALRASFNNPDRAVEYL+ GIP
Sbjct: 179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIP 230
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 55/86 (63%), Gaps = 9/86 (10%)
Query: 5 PAAATSTPSTPV------SQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YER 55
PAA ++T S+PV +Q A T G A STL+ G +MVQ I++MG +++
Sbjct: 106 PAAPSTTQSSPVPASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDK 165
Query: 56 SAVTEALRASFNNPDRAVEYLITGIP 81
VT ALRA++NNP+RAV+YL +GIP
Sbjct: 166 ETVTRALRAAYNNPERAVDYLYSGIP 191
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 4/75 (5%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNP 69
STPV Q TA + T G A STL+ G +MVQ I++MG +++ VT ALRA++NNP
Sbjct: 119 STPV-QEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNP 177
Query: 70 DRAVEYLITGIPAAV 84
+RAV+YL +GIP V
Sbjct: 178 ERAVDYLYSGIPETV 192
>sp|P32628|RAD23_YEAST UV excision repair protein RAD23 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RAD23 PE=1 SV=1
Length = 398
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 5/60 (8%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81
T +A+TPG ++G E ++ I++MGY+R V ALRA+FNNPDRAVEYL+ GIP
Sbjct: 134 TESASTPG-----FVVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGIP 188
>sp|Q84L30|RD23D_ARATH Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana
GN=RAD23-4 PE=2 SV=2
Length = 378
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 3/57 (5%)
Query: 29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGIPA 82
G A S L+ G VQ I+DMG ++R V ALRA+FNNP+RAVEYL +GIPA
Sbjct: 136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGIPA 192
>sp|Q84L31|RD23C_ARATH Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana
GN=RAD23-3 PE=2 SV=2
Length = 419
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 2 IGAPAAATSTPSTPVSQAGATAT-ATTPGNAESTLLMGDEYGRMVQNIVDMG---YERSA 57
I P AT + STP + + G A S L G +Q I+DMG ++R
Sbjct: 147 IPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAGSNLESTIQQILDMGGGTWDRET 206
Query: 58 VTEALRASFNNPDRAVEYLITGIP 81
V ALRA+FNNP+RAVEYL TGIP
Sbjct: 207 VVLALRAAFNNPERAVEYLYTGIP 230
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 11 TPSTPVSQAGATATATTP---GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRA 64
TP+ S A A A ++ G A S L+ G +Q+I++MG ++R V AL A
Sbjct: 125 TPTATASPAPAVAVSSEADNYGQATSNLVAGSNLEATIQSILEMGGGIWDRDIVLHALSA 184
Query: 65 SFNNPDRAVEYLITGIP 81
+FNNP+RAVEYL +G+P
Sbjct: 185 AFNNPERAVEYLYSGVP 201
>sp|Q54LV1|RAD23_DICDI UV excision repair protein RAD23 homolog OS=Dictyostelium
discoideum GN=rcbA PE=1 SV=1
Length = 342
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG-IPAA 83
G E ++NI DMG+ R V ALR +FNN +RA+EYL++G IPAA
Sbjct: 160 GTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSGNIPAA 206
>sp|Q3UHC0|TNR6C_MOUSE Trinucleotide repeat-containing gene 6C protein OS=Mus musculus
GN=Tnrc6c PE=1 SV=2
Length = 1690
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
S+ G TPG + +M R+++ + DMG+ R EAL+++ N D+A+
Sbjct: 914 TSKKGLQKGMKTPGKQDEAWIMS----RLIKQLTDMGFPREPAEEALKSNSMNLDQAMSA 969
Query: 76 LI 77
L+
Sbjct: 970 LL 971
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
MV I+ MG++RS +AL+A+ NN +RA+E++ +
Sbjct: 727 MVSIIISMGFQRSLAIQALKATNNNLERALEWIFS 761
>sp|Q59KN8|IPK1_CANAL Inositol-pentakisphosphate 2-kinase OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=IPK1 PE=3 SV=1
Length = 361
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 16 VSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
V + T + GN L++ + YG ++ NI+D Y + ++++ + FN+ D+ +
Sbjct: 78 VLDSNFTNKLNSQGNK---LMLNERYGLLLPNILDGDYRKISLSQKCQLYFNDNDQDINS 134
Query: 76 LITGI 80
+I I
Sbjct: 135 VIFEI 139
>sp|Q9HCJ0|TNR6C_HUMAN Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens
GN=TNRC6C PE=1 SV=3
Length = 1690
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
R+++ + DMG+ R EAL+++ N D+A+ L+
Sbjct: 942 RLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALL 976
>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5
PE=1 SV=1
Length = 858
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
V IV MG+ R +ALRA+ N+ +RAV+++ + I
Sbjct: 728 VTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHI 763
>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5
PE=1 SV=2
Length = 858
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
V IV MG+ R +ALRA+ N+ +RAV+++ + I
Sbjct: 728 VTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHI 763
>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5
PE=2 SV=1
Length = 858
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
V IV MG+ R +ALRA+ N+ +RAV+++ + I
Sbjct: 728 VTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHI 763
>sp|B1MGB3|KAD_MYCA9 Adenylate kinase OS=Mycobacterium abscessus (strain ATCC 19977 /
DSM 44196) GN=adk PE=3 SV=1
Length = 181
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG-YERSAVT 59
++G P A T + +S+ +T S + G E G + +D G S VT
Sbjct: 5 LLGPPGAGKGTQAQLISEKFGIPQISTGDLFRSNISEGTELGLQAKQYLDAGDLVPSEVT 64
Query: 60 -EALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEIEIP 113
+ + A + PD A +++ G P V +A A E +G I +V E +P
Sbjct: 65 NKMVEARLDEPDAAAGFILDGFPRTVDQADALAAMEEARGVTI---DAVLEFRVP 116
>sp|B0K2W1|SYI_THEPX Isoleucine--tRNA ligase OS=Thermoanaerobacter sp. (strain X514)
GN=ileS PE=3 SV=1
Length = 932
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 18 QAGATATATTPGNAESTLLMGDEYGRMVQN-IVDMGY 53
+AG T PG+ E L+G EYG V N I D GY
Sbjct: 323 EAGTGCVHTAPGHGEEDFLVGQEYGLEVLNPIDDKGY 359
>sp|B0K8R7|SYI_THEP3 Isoleucine--tRNA ligase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=ileS PE=3 SV=1
Length = 932
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 18 QAGATATATTPGNAESTLLMGDEYGRMVQN-IVDMGY 53
+AG T PG+ E L+G EYG V N I D GY
Sbjct: 323 EAGTGCVHTAPGHGEEDFLVGQEYGLEVLNPIDDKGY 359
>sp|C0QJ89|SYGB_DESAH Glycine--tRNA ligase beta subunit OS=Desulfobacterium autotrophicum
(strain ATCC 43914 / DSM 3382 / HRM2) GN=glyS PE=3 SV=1
Length = 689
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNN-PD 70
N ST ++ GRM +VD G+ R AV AL SF N PD
Sbjct: 519 NEISTQILEFLKGRMTNMLVDQGFSREAVNAALSVSFYNVPD 560
>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13
PE=1 SV=2
Length = 863
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
+V I MG++R+ +ALRA+ NN +RA++++ +
Sbjct: 732 IVAIITSMGFQRNQAIQALRATNNNLERALDWIFS 766
>sp|A3DJJ3|KAD_CLOTH Adenylate kinase OS=Clostridium thermocellum (strain ATCC 27405 /
DSM 1237) GN=adk PE=3 SV=1
Length = 217
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYE--RSAV 58
++GAP A T + +SQ +T S + G E GR + +D G
Sbjct: 5 LLGAPGAGKGTQAVVISQKYNVPHISTGDIFRSNIKNGTELGRKAKEYIDKGLLVPDELT 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAV 84
+ ++ + PD +++ G P +
Sbjct: 65 VDIVKDRISQPDCKAGFILDGFPRTI 90
>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis
GN=usp13 PE=3 SV=2
Length = 846
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRA 72
+ P+ G +T + ++ LL +V I MG+ R+ +ALRA+ NN +RA
Sbjct: 683 AEPLIIPGCGTVTSTSSHGQNALL-NQPPEEIVALICSMGFPRNHALQALRATNNNLERA 741
Query: 73 VEYLIT 78
++++ +
Sbjct: 742 LDWMFS 747
>sp|A4SVI8|KAD_POLSQ Adenylate kinase OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=adk PE=3 SV=1
Length = 221
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG--YERSAV 58
++GAP A T + + + A +T + + G E+G + I+D G +
Sbjct: 5 LLGAPGAGKGTQAQFICEKFAIPQISTGDMLRAAVKAGTEFGVAAKKIMDAGGLVSDDII 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEIEIP 113
++ PD + YL G P + +A A P V EI++P
Sbjct: 65 IGLVKDRLTQPDCSKGYLFDGFPRTIPQAQAMKDAGVP-------IDYVLEIDVP 112
>sp|P48834|ZP4_FELCA Zona pellucida sperm-binding protein 4 OS=Felis catus GN=ZP4 PE=2
SV=1
Length = 570
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 6 AAATSTPSTPVSQAGATATATTPGNAESTLLMG----DEYGRMVQNIVDMGYERSAVTEA 61
+ TS P TP S+ TP ++ +++G D GR V N T+
Sbjct: 104 SPGTSRPPTPASR-------VTPQDSHYVMIVGVEGTDAAGRRVTN-----------TKV 145
Query: 62 LRASFNNPDRAVEYLITGIPAAVVGEEAPVA 92
LR N PD+A+ ++ P V EAP A
Sbjct: 146 LRCPRNPPDQALVSSLSPSPLQNVALEAPNA 176
>sp|P92958|KIN11_ARATH SNF1-related protein kinase catalytic subunit alpha KIN11
OS=Arabidopsis thaliana GN=KIN11 PE=1 SV=1
Length = 512
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 26 TTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
+ P E + +E +VQ +V+MG++R+ V E+LR N YL+
Sbjct: 283 SPPDTVEQAKKINEE---IVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLL 331
>sp|B9JDU9|KAD_AGRRK Adenylate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC
BAA-868) GN=adk PE=3 SV=1
Length = 216
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERS--AV 58
++G P A T + + + +T + + G E G+ + ++D G S V
Sbjct: 5 LLGPPGAGKGTQAQRIVEKHGIPQLSTGDMLRAAVAAGTEVGKRAKAVMDAGKLVSDDIV 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEIEIPNLMQG 118
+ + PD A +++ G P +V +A A + +G + S+V EI++ + +
Sbjct: 65 NAIVSERIDQPDCARGFILDGFPRTLVQADATEAMLKAKG---LELSAVIEIKVDDAVLA 121
Query: 119 DN 120
D
Sbjct: 122 DR 123
>sp|P61087|UBE2K_MOUSE Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=1
SV=3
Length = 200
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
EY + ++N+ MG++R+AV AL + + + A E L++
Sbjct: 161 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 199
>sp|P61086|UBE2K_HUMAN Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1
SV=3
Length = 200
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
EY + ++N+ MG++R+AV AL + + + A E L++
Sbjct: 161 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 199
>sp|P61085|UBE2K_BOVIN Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3
Length = 200
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
EY + ++N+ MG++R+AV AL + + + A E L++
Sbjct: 161 EYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 199
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 43 RMVQNIVDMGYERSAVTEALRA-SFNNPDRAVEYLITG 79
++V IV+MG+E+ EA++A + D AVEY++ G
Sbjct: 7 QLVMKIVEMGFEKLDALEAVKAVGGKSCDDAVEYILKG 44
>sp|Q3J7A3|KAD_NITOC Adenylate kinase OS=Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848) GN=adk PE=3 SV=1
Length = 217
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG--YERSAV 58
++GAP + T +SQ +T + + G E G+ + +D G V
Sbjct: 5 LLGAPGSGKGTQGERLSQQYGIPQVSTGDLLRAAVAAGSELGKQAKAAMDAGELVSDQIV 64
Query: 59 TEALRASFNNPDRAVEYLITGIP 81
+R PD A Y++ G P
Sbjct: 65 IGIIRERLTQPDAAKGYILDGFP 87
>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13
PE=2 SV=1
Length = 860
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 48 IVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
+ MG+ R +AL+AS NN +RA++++ T
Sbjct: 719 LTSMGFPRHHTIQALKASNNNLERALDWIFT 749
>sp|Q8R9L3|SYI_THETN Isoleucine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=ileS PE=3
SV=1
Length = 932
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 19 AGATATATTPGNAESTLLMGDEYGRMVQNIVD 50
AG T PG+ E L+G EYG N +D
Sbjct: 324 AGTGCVHTAPGHGEEDFLVGQEYGLEALNPID 355
>sp|Q6NRP6|TDRD3_XENLA Tudor domain-containing protein 3 OS=Xenopus laevis GN=tdrd3 PE=2
SV=1
Length = 650
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQG 98
+ +++I +MG+ + A +AL NN + A+ +L+TG VV P + +G
Sbjct: 196 KALRHITEMGFCKDAARQALMDHSNNVEAALNFLLTGSKPKVVQGPPPRGKGKGRG 251
>sp|A2SIQ4|KAD_METPP Adenylate kinase OS=Methylibium petroleiphilum (strain PM1) GN=adk
PE=3 SV=1
Length = 217
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 17/120 (14%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG--YERSAV 58
++GAP A T +T + Q +T + + G G + ++D G +
Sbjct: 5 LLGAPGAGKGTQATFICQKFGIPQISTGDMLRAAVKAGTPLGLEAKKVMDSGGLVSDDII 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIK----QFSSVKEIEIPN 114
++ PD A +L G P + PQ + +K + V EI++P+
Sbjct: 65 IGLVKERITQPDCANGFLFDGFPRTI-----------PQADAMKAAGVKLDLVLEIDVPD 113
>sp|B0TXR2|KAD_FRAP2 Adenylate kinase OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=adk PE=3 SV=1
Length = 216
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSA--V 58
++GAP A T + + A +T T+ E G+ ++ ++D G S +
Sbjct: 5 LLGAPGAGKGTQAKIIEDKYNIAHISTGDMIRETIKSDSEIGKELKKVLDAGQLVSDEFI 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAVVGEE 88
+ ++ + D +L+ G+P ++ E
Sbjct: 65 IKIVKDRISKDDCKNGFLLDGVPRTIIQAE 94
>sp|Q13UR8|KAD_BURXL Adenylate kinase OS=Burkholderia xenovorans (strain LB400) GN=adk
PE=3 SV=1
Length = 221
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 23/122 (18%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
++GAP A T +T + + +T + + G G + +D G VT+
Sbjct: 5 LLGAPGAGKGTQATFIKEKFGIPQISTGDMLRAAVKAGTPLGLEAKRFMDAG---ELVTD 61
Query: 61 AL-----RASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQ----FSSVKEIE 111
L + PD A YL G P + PQ +KQ V EI+
Sbjct: 62 ELIINLVKERLQQPDCANGYLFDGFPRTI-----------PQAEAMKQAGVAIDYVLEID 110
Query: 112 IP 113
+P
Sbjct: 111 VP 112
>sp|Q6A6Q4|KAD_PROAC Adenylate kinase OS=Propionibacterium acnes (strain KPA171202 / DSM
16379) GN=adk PE=3 SV=1
Length = 189
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG-YERSAVT 59
++GAP A T +T +++ + +T + + G E G+ V+ I+D G +T
Sbjct: 5 IMGAPGAGKGTQATAIAEHYSVPAISTGDMFRTNIKNGTELGKKVKAIMDAGDLVPDELT 64
Query: 60 EALRAS-FNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSSV 107
+A+ N D A +L+ G P + EA A + G + S+
Sbjct: 65 DAIVVDRLNQDDAANGFLLDGYPRNMHQVEALDAYLKEHGQRLDAVISL 113
>sp|Q21II4|KAD_SACD2 Adenylate kinase OS=Saccharophagus degradans (strain 2-40 / ATCC
43961 / DSM 17024) GN=adk PE=3 SV=1
Length = 218
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 14/137 (10%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG--YERSAV 58
++GAP A T + + +A +T + + G G V++I+ G +
Sbjct: 5 LLGAPGAGKGTQAKFIMEAYGVPQISTGDMLRAAVKAGSPLGLKVKDIMTSGGLVSDDII 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGNNIKQFSS--VKEIEIPNLM 116
+ ++ PD +L G P + EA VAA G NI V++ EI + +
Sbjct: 65 IDLVKERIAEPDCQKGFLFDGFPRTIPQAEALVAA----GVNIDHVLEIFVEDEEIVSRL 120
Query: 117 QGDN------KVYTLKY 127
G +VY +K+
Sbjct: 121 SGRRVHEASGRVYHVKH 137
>sp|P44252|LOLC_HAEIN Lipoprotein-releasing system transmembrane protein LolC
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=lolC PE=3 SV=1
Length = 393
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVE--YLITGIPAAVVGEEAPVAANEP 96
D +GR+V N+ +G + + S N + +++ IP A+V EE P+ + E
Sbjct: 20 DRFGRLVTNLASLGIVLGVMALIIVLSVMNGLEGYQKQQVLSSIPHAIVSEEQPI-STEK 78
Query: 97 QGNNIKQF 104
N+ F
Sbjct: 79 TLENLPHF 86
>sp|Q5QWR3|KAD_IDILO Adenylate kinase OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=adk PE=3 SV=1
Length = 215
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERS--AV 58
++GAP A T + + +T S + G E G+ + ++D G S +
Sbjct: 5 LLGAPGAGKGTQAQFLMNTFGIPQISTGDMLRSAIKSGSELGKKAKQVMDAGQLVSDDII 64
Query: 59 TEALRASFNNPDRAVEYLITGIPAAV 84
E ++ PD +L+ G P +
Sbjct: 65 IELVKERIAEPDCQNGFLLDGFPRTI 90
>sp|Q28DG7|UBAC1_XENTR Ubiquitin-associated domain-containing protein 1 OS=Xenopus
tropicalis GN=ubac1 PE=2 SV=1
Length = 406
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
R V +++MG++ V +ALR + N D A E+L+
Sbjct: 293 RAVIALMEMGFDEKEVIDALRVNNNQQDAACEWLL 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.124 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,994,833
Number of Sequences: 539616
Number of extensions: 1707455
Number of successful extensions: 6936
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 6701
Number of HSP's gapped (non-prelim): 302
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)