Query psy4260
Match_columns 129
No_of_seqs 125 out of 460
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 20:52:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqy_A HHR23A, UV excision rep 99.9 1.3E-25 4.6E-30 189.6 5.8 92 31-122 158-270 (368)
2 1ify_A HHR23A, UV excision rep 99.8 1.5E-19 5.2E-24 114.1 5.0 49 34-82 1-49 (49)
3 2g3q_A Protein YBL047C; endocy 99.7 1.4E-16 4.9E-21 97.1 5.7 41 40-80 3-43 (43)
4 1vej_A Riken cDNA 4931431F19; 99.6 6E-16 2.1E-20 106.0 8.1 50 34-83 22-72 (74)
5 1vg5_A RSGI RUH-014, rhomboid 99.6 3E-15 1E-19 102.1 9.0 44 37-80 25-68 (73)
6 1wji_A Tudor domain containing 99.6 1.5E-15 5.1E-20 100.5 6.5 43 39-81 7-49 (63)
7 1wgn_A UBAP1, ubiquitin associ 99.6 5E-16 1.7E-20 104.0 3.8 43 38-80 16-58 (63)
8 2jy5_A Ubiquilin-1; UBA, alter 99.6 2.6E-15 8.9E-20 95.7 6.6 43 37-79 8-51 (52)
9 2dak_A Ubiquitin carboxyl-term 99.6 9.1E-16 3.1E-20 100.7 4.4 44 39-82 7-50 (63)
10 2knz_A Ubiquilin-4; cytoplasm, 99.6 4E-15 1.4E-19 95.1 5.9 44 38-81 8-52 (53)
11 1wiv_A UBP14, ubiquitin-specif 99.6 6.4E-15 2.2E-19 99.8 6.6 42 39-80 27-68 (73)
12 1veg_A NEDD8 ultimate buster-1 99.6 6.2E-15 2.1E-19 102.9 6.6 41 39-79 27-67 (83)
13 2cpw_A CBL-interacting protein 99.6 8.7E-15 3E-19 96.9 6.8 42 40-81 18-60 (64)
14 2bwb_A Ubiquitin-like protein 99.5 6.8E-15 2.3E-19 92.0 5.8 41 39-79 5-46 (46)
15 2dag_A Ubiquitin carboxyl-term 99.5 1E-14 3.6E-19 99.0 6.2 45 39-83 7-52 (74)
16 2crn_A Ubash3A protein; compac 99.5 9.5E-15 3.2E-19 96.9 5.5 46 37-82 5-51 (64)
17 1whc_A RSGI RUH-027, UBA/UBX 3 99.5 7.4E-15 2.5E-19 97.1 4.9 44 39-82 7-51 (64)
18 1z96_A DNA-damage, UBA-domain 99.5 1.4E-14 4.8E-19 85.9 5.1 39 39-77 2-40 (40)
19 1wr1_B Ubiquitin-like protein 99.5 1E-14 3.4E-19 95.5 4.7 43 37-79 13-56 (58)
20 2ekk_A UBA domain from E3 ubiq 99.5 2.9E-14 9.8E-19 88.5 5.0 40 39-79 7-46 (47)
21 2dai_A Ubadc1, ubiquitin assoc 99.5 3.3E-14 1.1E-18 98.7 5.7 43 40-82 28-70 (83)
22 1dv0_A DNA repair protein HHR2 99.5 7.5E-15 2.6E-19 92.1 2.1 43 39-81 2-44 (47)
23 1vek_A UBP14, ubiquitin-specif 99.4 1.2E-13 4E-18 95.9 6.0 44 39-82 27-71 (84)
24 2dna_A Unnamed protein product 99.4 1.1E-13 3.8E-18 93.4 5.6 45 38-82 16-61 (67)
25 2dah_A Ubiquilin-3; UBA domain 99.4 1.3E-13 4.4E-18 88.9 5.5 42 39-80 7-49 (54)
26 2dkl_A Trinucleotide repeat co 99.4 2.9E-13 9.9E-18 94.4 6.1 40 41-80 21-60 (85)
27 2lbc_A Ubiquitin carboxyl-term 99.4 8.7E-13 3E-17 95.7 6.2 42 40-81 77-118 (126)
28 2cwb_A Chimera of immunoglobul 99.3 3.1E-12 1.1E-16 93.0 6.0 43 38-80 63-106 (108)
29 2ooa_A E3 ubiquitin-protein li 99.2 1.8E-11 6E-16 79.3 5.5 39 40-78 10-48 (52)
30 4ae4_A Ubiquitin-associated pr 99.2 1.5E-11 5.2E-16 89.9 5.4 39 41-79 76-114 (118)
31 2d9s_A CBL E3 ubiquitin protei 99.2 4.3E-11 1.5E-15 77.7 5.9 41 39-79 7-47 (53)
32 3k9o_A Ubiquitin-conjugating e 99.1 4.8E-11 1.6E-15 92.3 5.3 42 38-79 160-201 (201)
33 2juj_A E3 ubiquitin-protein li 99.1 1.4E-10 4.8E-15 75.9 4.4 42 38-79 4-45 (56)
34 2lbc_A Ubiquitin carboxyl-term 99.0 1.5E-10 5.1E-15 83.9 4.4 43 40-82 2-45 (126)
35 1wj7_A Hypothetical protein (R 99.0 4.5E-10 1.5E-14 81.4 5.9 42 40-81 38-80 (104)
36 2oo9_A E3 ubiquitin-protein li 99.0 1E-09 3.4E-14 69.4 5.6 42 38-79 1-42 (46)
37 4ae4_A Ubiquitin-associated pr 99.0 4.4E-10 1.5E-14 82.1 4.5 42 38-79 5-46 (118)
38 1oqy_A HHR23A, UV excision rep 98.9 1.9E-10 6.5E-15 97.1 1.5 42 39-80 323-364 (368)
39 2qsf_X RAD23, UV excision repa 98.9 1.7E-09 6E-14 83.8 4.8 42 38-79 127-168 (171)
40 2cp8_A NEXT to BRCA1 gene 1 pr 98.9 3.3E-09 1.1E-13 68.9 5.1 44 36-79 4-48 (54)
41 3e46_A Ubiquitin-conjugating e 98.7 1E-08 3.6E-13 82.8 5.5 41 38-78 212-252 (253)
42 2cos_A Serine/threonine protei 98.6 7.3E-08 2.5E-12 62.7 5.4 40 39-78 7-47 (54)
43 3ihp_A Ubiquitin carboxyl-term 98.1 1.7E-06 5.9E-11 79.0 4.7 43 38-80 717-759 (854)
44 2pwq_A Ubiquitin conjugating e 98.1 5.3E-07 1.8E-11 71.1 0.0 39 41-79 177-215 (216)
45 1wgl_A TOLL-interacting protei 97.8 3E-05 1E-09 50.5 4.4 41 39-79 7-49 (59)
46 1otr_A Protein CUE2; protein-p 97.6 8.8E-05 3E-09 46.9 4.9 39 41-79 4-44 (49)
47 2cp9_A EF-TS, EF-TSMT, elongat 97.5 0.00013 4.3E-09 48.6 5.0 39 40-78 8-47 (64)
48 2dhy_A CUE domain-containing p 97.4 0.00072 2.5E-08 45.1 7.1 45 35-79 12-58 (67)
49 3ihp_A Ubiquitin carboxyl-term 97.3 0.00018 6.3E-09 65.7 4.9 44 39-82 650-694 (854)
50 1tte_A Ubiquitin-conjugating e 97.2 0.00029 9.9E-09 55.4 4.5 30 40-69 168-197 (215)
51 2di0_A Activating signal coint 97.1 0.0016 5.5E-08 44.1 6.8 48 35-82 7-57 (71)
52 1v92_A NSFL1 cofactor P47; 3-h 96.9 0.0017 5.7E-08 38.8 5.0 39 41-79 5-44 (46)
53 1q02_A Sequestosome 1; helical 96.8 0.00081 2.8E-08 43.3 3.1 39 39-77 8-48 (52)
54 1pve_A HHR23B, UV excision rep 96.7 0.00029 9.8E-09 47.8 0.1 29 94-122 5-39 (72)
55 2dal_A Protein KIAA0794; FAS a 96.6 0.0029 9.7E-08 40.9 4.5 41 39-79 13-54 (62)
56 2dam_A ETEA protein; KIAA0887, 96.2 0.014 4.7E-07 38.3 6.1 42 38-79 15-58 (67)
57 2f4m_B UV excision repair prot 96.1 0.0003 1E-08 46.2 -2.3 28 95-122 4-37 (61)
58 2dzl_A Protein FAM100B; UBA-li 96.1 0.019 6.6E-07 37.6 6.4 37 43-79 19-56 (66)
59 4dbg_B Ring finger protein 31; 95.9 0.0068 2.3E-07 46.7 4.1 35 42-76 103-138 (162)
60 1xb2_B EF-TS, elongation facto 95.9 0.0096 3.3E-07 49.0 5.1 37 42-78 5-42 (291)
61 1tr8_A Conserved protein (MTH1 95.8 0.011 3.6E-07 42.1 4.4 37 40-76 64-101 (102)
62 1aip_C EF-TS, elongation facto 95.7 0.014 4.7E-07 46.0 5.1 36 42-77 4-40 (196)
63 3e21_A HFAF1, FAS-associated f 95.2 0.032 1.1E-06 34.4 4.5 35 40-74 4-40 (45)
64 2qsf_X RAD23, UV excision repa 94.8 0.0021 7.3E-08 49.6 -2.0 30 92-121 22-58 (171)
65 1p3q_Q VPS9P, vacuolar protein 93.7 0.027 9.2E-07 36.2 1.7 39 40-78 11-51 (54)
66 1ixs_A Holliday junction DNA h 92.7 0.31 1.1E-05 31.3 5.6 28 38-65 14-41 (62)
67 2qho_B E3 ubiquitin-protein li 92.0 0.4 1.4E-05 30.6 5.4 40 40-79 8-49 (53)
68 1oai_A Nuclear RNA export fact 90.6 0.58 2E-05 29.9 5.2 36 40-75 6-42 (59)
69 1vdl_A Ubiquitin carboxyl-term 90.4 1.3 4.5E-05 30.4 7.0 40 40-79 23-64 (80)
70 1ufz_A Hypothetical protein BA 88.5 0.69 2.4E-05 32.0 4.6 27 53-79 49-75 (83)
71 3bq3_A Defective in cullin ned 86.2 0.93 3.2E-05 36.7 4.9 40 40-79 14-54 (270)
72 3e7l_A Transcriptional regulat 84.5 1.5 5.2E-05 27.1 4.3 24 53-76 19-42 (63)
73 2jp7_A MRNA export factor MEX6 83.2 1.5 5.2E-05 27.9 3.9 35 40-74 5-40 (57)
74 3avx_A Elongation factor TS, e 81.7 0.23 7.9E-06 48.1 -0.6 35 44-78 8-43 (1289)
75 2ekf_A Ancient ubiquitous prot 81.3 5.7 0.00019 25.8 6.2 41 38-79 10-52 (61)
76 2ejs_A Autocrine motility fact 80.8 7 0.00024 25.1 6.4 41 38-79 10-52 (58)
77 4g3o_A E3 ubiquitin-protein li 79.2 5.4 0.00018 25.8 5.5 38 41-79 17-56 (58)
78 4dbg_B Ring finger protein 31; 78.2 2.3 7.9E-05 32.6 4.1 25 53-77 75-99 (162)
79 1umq_A Photosynthetic apparatu 77.9 1.4 4.6E-05 29.6 2.4 24 53-76 41-64 (81)
80 1cuk_A RUVA protein; DNA repai 77.1 4.2 0.00014 31.3 5.4 26 40-65 159-184 (203)
81 2lva_A Ubiquitin carboxyl-term 78.3 0.51 1.7E-05 35.1 0.0 38 42-79 19-58 (129)
82 2ztd_A Holliday junction ATP-d 74.8 5.7 0.0002 30.9 5.6 26 40-65 163-188 (212)
83 2kna_A Baculoviral IAP repeat- 73.7 2.9 9.9E-05 29.2 3.3 36 44-79 30-72 (104)
84 3k6g_A Telomeric repeat-bindin 72.8 8.5 0.00029 27.8 5.6 33 48-80 21-53 (111)
85 3fe3_A MAP/microtubule affinit 72.4 6.7 0.00023 30.4 5.5 39 40-78 288-326 (328)
86 1ntc_A Protein (nitrogen regul 67.6 1.8 6.2E-05 28.6 1.1 24 53-76 51-74 (91)
87 1eto_A FIS, factor for inversi 66.3 3.6 0.00012 28.2 2.4 24 53-76 58-81 (98)
88 4fp9_B Mterf domain-containing 66.2 7.7 0.00026 31.9 4.8 30 40-69 45-74 (335)
89 1g2h_A Transcriptional regulat 65.8 2.9 9.9E-05 25.8 1.7 23 53-76 21-43 (61)
90 1ixr_A Holliday junction DNA h 55.0 2.5 8.7E-05 32.3 0.0 25 41-65 146-170 (191)
91 3t6p_A Baculoviral IAP repeat- 54.3 9.9 0.00034 31.3 3.5 37 42-78 120-163 (345)
92 3mva_O Transcription terminati 50.5 8.3 0.00028 30.9 2.4 40 39-78 17-60 (343)
93 2w84_A Peroxisomal membrane pr 48.3 25 0.00086 23.4 4.1 31 38-68 32-62 (70)
94 3ff5_A PEX14P, peroxisomal bio 43.6 28 0.00096 22.0 3.6 28 38-65 27-54 (54)
95 1jkg_B TAP; NTF2-like domain, 43.5 4.9 0.00017 31.5 0.0 35 40-74 197-232 (250)
96 1ojl_A Transcriptional regulat 40.9 12 0.00042 29.1 1.9 24 53-76 268-291 (304)
97 1nri_A Hypothetical protein HI 38.7 12 0.00042 29.5 1.6 39 43-81 246-285 (306)
98 2ev1_A Hypothetical protein RV 33.8 28 0.00097 27.4 3.0 34 45-78 126-159 (222)
99 2kr0_A Proteasomal ubiquitin r 33.5 1.3E+02 0.0044 25.8 7.2 48 67-120 306-364 (411)
100 3h4j_B AMPK kdaid, SNF1-like p 28.3 25 0.00086 27.4 1.8 38 40-77 281-319 (336)
101 1v77_A PH1877P, hypothetical p 27.4 33 0.0011 25.6 2.3 26 40-65 177-202 (212)
102 3q8k_A Flap endonuclease 1; he 27.1 61 0.0021 26.3 4.0 31 35-65 295-327 (341)
103 3q8g_A CRAL-TRIO domain-contai 26.0 1.7E+02 0.0057 23.1 6.3 37 40-76 38-82 (320)
104 2f46_A Hypothetical protein; s 25.7 46 0.0016 23.2 2.7 26 51-76 126-151 (156)
105 3hgl_A Effector protein hopab2 24.3 19 0.00065 24.8 0.4 42 42-83 10-56 (85)
106 2vxg_A LD41624, GE-1, CG6181-P 24.0 67 0.0023 23.3 3.3 36 43-81 5-40 (139)
107 3tjy_A Effector protein hopab3 24.0 27 0.00092 24.5 1.1 41 42-82 8-53 (94)
108 3cz6_A DNA-binding protein RAP 23.8 92 0.0031 23.8 4.2 45 40-84 62-113 (168)
109 3kvh_A Protein syndesmos; NUDT 23.0 76 0.0026 25.1 3.7 43 35-77 160-203 (214)
110 1g2y_A Hepatocyte nuclear fact 21.6 1.2E+02 0.004 17.4 3.3 23 41-63 9-31 (32)
111 3m8j_A FOCB protein; all-alpha 21.5 90 0.0031 22.3 3.5 32 33-64 23-55 (111)
112 4fp9_B Mterf domain-containing 21.4 78 0.0027 25.8 3.6 39 40-78 77-122 (335)
113 1a5t_A Delta prime, HOLB; zinc 21.0 1.4E+02 0.0046 23.2 4.8 36 41-76 169-205 (334)
114 1owf_B IHF-beta, integration H 20.8 1.8E+02 0.0061 18.7 5.2 35 42-79 4-40 (94)
No 1
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.91 E-value=1.3e-25 Score=189.55 Aligned_cols=92 Identities=42% Similarity=0.641 Sum_probs=78.0
Q ss_pred CcccccCCCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCCCCcCCCCCC---------------ccCCC
Q psy4260 31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAP---------------VAANE 95 (129)
Q Consensus 31 ~~s~~~~g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP~~~~~~~~~---------------~a~~~ 95 (129)
+.|++++|+.+++.|++|++|||+|++|++|||+++||+|||+||||+|||+..+...+. .....
T Consensus 158 ~~s~l~~g~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn~~~A~e~L~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 237 (368)
T 1oqy_A 158 AASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPL 237 (368)
T ss_dssp CCTTTCCTTTHHHHHHHHHTTTCCSHHHHHHHHHSCSSTTHHHHTTTTSSTTCSSCCCCCCCCCCSSCCCCSSCCSCCTT
T ss_pred ccccccCCcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcccccccCCccccccccccCccccccchH
Confidence 468899999999999999999999999999999999999999999999999864421110 01233
Q ss_pred CCCCCCCCccchhhhh------hhhhhhcCCce
Q psy4260 96 PQGNNIKQFSSVKEIE------IPNLMQGDNKV 122 (129)
Q Consensus 96 ~~~~n~PqF~~~r~~~------lp~llq~~~~~ 122 (129)
.++||+|||++||++| |+.|||+.++-
T Consensus 238 ~~Lr~~pqf~~lR~~vq~nP~~l~~~lq~l~~~ 270 (368)
T 1oqy_A 238 EFLRDQPQFQNMRQVIQQNPALLPALLQQLGQE 270 (368)
T ss_dssp HHHHHSHHHHHHHHSTTTCTTHHHHHHTTTTTT
T ss_pred HHHhcChHHHHHHHHHHhChHHHHHHHHHHHhh
Confidence 4578999999999999 99999999863
No 2
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.78 E-value=1.5e-19 Score=114.12 Aligned_cols=49 Identities=63% Similarity=1.051 Sum_probs=46.4
Q ss_pred cccCCCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCCC
Q psy4260 34 TLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82 (129)
Q Consensus 34 ~~~~g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP~ 82 (129)
++++++.++++|++|++|||+|++|++||++++||+|+|+|||++|||+
T Consensus 1 ~~~~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~gip~ 49 (49)
T 1ify_A 1 TLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 49 (49)
T ss_dssp CCCCSHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHCCCC
T ss_pred CCCCCccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCCCC
Confidence 4678899999999999999999999999999999999999999999884
No 3
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.65 E-value=1.4e-16 Score=97.07 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
.+++.|++|++|||+|++|++||++++||+++|++|||+||
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~~ 43 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDSA 43 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999999885
No 4
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.64 E-value=6e-16 Score=105.96 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=44.5
Q ss_pred cccCCCchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcCCCCC
Q psy4260 34 TLLMGDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITGIPAA 83 (129)
Q Consensus 34 ~~~~g~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~giP~~ 83 (129)
+......++++|++|++||| +|+++++||++++||+++||||||+|+|..
T Consensus 22 ~~~pe~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 22 SLFTEGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPS 72 (74)
T ss_dssp GGGTTTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCC
T ss_pred CCCchHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCC
Confidence 34456778999999999999 689999999999999999999999997754
No 5
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.61 E-value=3e-15 Score=102.11 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=41.2
Q ss_pred CCCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 37 ~g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
....++++|++|++|||+|++|++||++++||+|+|+||||+|.
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~~ 68 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQS 68 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 45668999999999999999999999999999999999999984
No 6
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.60 E-value=1.5e-15 Score=100.52 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
..++++|++|++|||+|++|++||++++||+++|+||||++..
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 3578999999999999999999999999999999999999843
No 7
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.59 E-value=5e-16 Score=103.96 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
.+..++.|++|++|||+++||++|||+++||+|||+||||+|+
T Consensus 16 s~se~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 16 SPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHS 58 (63)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 3456778999999999999999999999999999999999993
No 8
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.59 E-value=2.6e-15 Score=95.75 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=40.5
Q ss_pred CCCchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 37 MGDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 37 ~g~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~g 79 (129)
....++++|++|++||| +|+.+++||++++||+++|+||||+|
T Consensus 8 p~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 8 PEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred chhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35678999999999999 99999999999999999999999987
No 9
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.1e-16 Score=100.72 Aligned_cols=44 Identities=34% Similarity=0.521 Sum_probs=41.0
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP~ 82 (129)
..++++|++|++|||+|++|++||++++||+|+|++|||+|+++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 45789999999999999999999999999999999999999654
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.56 E-value=4e-15 Score=95.09 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=40.4
Q ss_pred CCchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 38 GDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
...++++|++|++||| +|+.+++||++++||+++|+||||+|.+
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~~~ 52 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQL 52 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHCCC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3567889999999999 9999999999999999999999999853
No 11
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.55 E-value=6.4e-15 Score=99.84 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=39.9
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
...+++|++|++|||+|++|++||++++||+++|+||||+|.
T Consensus 27 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 27 DIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp SSCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 467899999999999999999999999999999999999993
No 12
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.55 E-value=6.2e-15 Score=102.94 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=38.9
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
..++++|++|++|||+|++|++||++++||+++|+||||+|
T Consensus 27 ~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 27 SPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 44789999999999999999999999999999999999996
No 13
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.55 E-value=8.7e-15 Score=96.89 Aligned_cols=42 Identities=19% Similarity=0.371 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHcCCC
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIP 81 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~-n~erAvE~L~~giP 81 (129)
..++.|++|++|||++++|++||++++| |+|+|+||||+|+.
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 5678899999999999999999999999 99999999999943
No 14
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.55 E-value=6.8e-15 Score=92.04 Aligned_cols=41 Identities=27% Similarity=0.472 Sum_probs=37.4
Q ss_pred CchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 39 DEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~g 79 (129)
..++++|++|++||| +|+.+++||++++||+++||||||+|
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 357889999999999 57788999999999999999999986
No 15
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1e-14 Score=99.01 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHcCCCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIPAA 83 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~-n~erAvE~L~~giP~~ 83 (129)
...++.|++|++|||+|++|++||++++| |+|+|+||||+|+++.
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 45789999999999999999999999997 8999999999996653
No 16
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.53 E-value=9.5e-15 Score=96.91 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=41.6
Q ss_pred CCCchHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHcCCCC
Q psy4260 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIPA 82 (129)
Q Consensus 37 ~g~~~ee~I~~L~eMGF~reqv~~ALras~~-n~erAvE~L~~giP~ 82 (129)
.+..+++.|++|++|||+|++|++||++++| |+++|++|||+|+++
T Consensus 5 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d 51 (64)
T 2crn_A 5 SSGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDHCND 51 (64)
T ss_dssp SCCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 3556788899999999999999999999988 999999999999654
No 17
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.53 E-value=7.4e-15 Score=97.12 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=40.0
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHh-CCCHHHHHHHHHcCCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRAS-FNNPDRAVEYLITGIPA 82 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras-~~n~erAvE~L~~giP~ 82 (129)
..+++.|++|++|||+|++|++||+++ +||+++|++|||+|+++
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 7 GAELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp CCCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 346778999999999999999999999 69999999999999654
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.52 E-value=1.4e-14 Score=85.94 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=36.2
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHH
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~ 77 (129)
+..++.|++|++|||++++|++||++++||+++|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 356889999999999999999999999999999999996
No 19
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.52 E-value=1e-14 Score=95.51 Aligned_cols=43 Identities=26% Similarity=0.426 Sum_probs=39.2
Q ss_pred CCCchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 37 MGDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 37 ~g~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~g 79 (129)
....++++|++|++||| +|+.+++||++++||+++||||||+|
T Consensus 13 pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 13 PEERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 34567889999999999 58888999999999999999999998
No 20
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-14 Score=88.52 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
..+++.|++|++|||++++|++||++++ |+|+|+||||+|
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4578999999999999999999999995 999999999987
No 21
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.3e-14 Score=98.68 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=40.2
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCCC
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP~ 82 (129)
.+++.|++|++|||++++|++||++++||+++|++|||+|+++
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~~~d 70 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEHAED 70 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 4789999999999999999999999999999999999999543
No 22
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.48 E-value=7.5e-15 Score=92.09 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
++.+++|++|++|||+|.+|++||.+++||+++|++|||+|+.
T Consensus 2 ~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~~~ 44 (47)
T 1dv0_A 2 SQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF 44 (47)
T ss_dssp -CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSCCC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcC
Confidence 4578899999999999999999999999999999999999954
No 23
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.44 E-value=1.2e-13 Score=95.91 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhC-CCHHHHHHHHHcCCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASF-NNPDRAVEYLITGIPA 82 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~-~n~erAvE~L~~giP~ 82 (129)
..+++.|++|++|||+|++|++||++++ ||+++|++|||+|+++
T Consensus 27 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d 71 (84)
T 1vek_A 27 VANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLSHMDD 71 (84)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4578999999999999999999999996 6999999999999654
No 24
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.44 E-value=1.1e-13 Score=93.35 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCchHHHHHHHHHcCCC-hHHHHHHHHHhCCCHHHHHHHHHcCCCC
Q psy4260 38 GDEYGRMVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITGIPA 82 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~-reqv~~ALras~~n~erAvE~L~~giP~ 82 (129)
...+++.|++|++|||. ++.+++||++++||+++||||||+++++
T Consensus 16 e~~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 16 EVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHHTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 44578899999999985 5555999999999999999999999665
No 25
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.44 E-value=1.3e-13 Score=88.85 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=37.5
Q ss_pred CchHHHHHHHHHcCCChH-HHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 39 DEYGRMVQNIVDMGYERS-AVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~re-qv~~ALras~~n~erAvE~L~~gi 80 (129)
..++++|++|++|||.++ .+++||++++||+++||||||++.
T Consensus 7 ~~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 7 GHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp CSSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 467899999999999655 579999999999999999999983
No 26
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.41 E-value=2.9e-13 Score=94.36 Aligned_cols=40 Identities=30% Similarity=0.532 Sum_probs=38.2
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 41 YGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 41 ~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
.+++|++|++|||+|++|++||+.++||+|+|++|||+|.
T Consensus 21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 21 MSRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 4889999999999999999999999999999999999993
No 27
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.36 E-value=8.7e-13 Score=95.70 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=40.3
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
..++.|++|++|||++++|++||++++||+++|++|||+|++
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 578999999999999999999999999999999999999966
No 28
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=99.30 E-value=3.1e-12 Score=92.96 Aligned_cols=43 Identities=26% Similarity=0.401 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 38 GDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
...++++|++|.+||| +|+++++||++++||+++||||||++.
T Consensus 63 e~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 63 GSQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp CCTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred ccchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 3467899999999999 578999999999999999999999983
No 29
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.21 E-value=1.8e-11 Score=79.28 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=35.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
..++.|++||+|||+|++|++||+.++||+|.|..+|++
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445899999999999999999999999999999999874
No 30
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=99.20 E-value=1.5e-11 Score=89.85 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=36.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 41 YGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 41 ~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
+.+.|.+|++|||++++|++||+.++||.|||+||||.+
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 456799999999999999999999999999999999975
No 31
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=4.3e-11 Score=77.69 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=37.1
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
+..+..|++||+|||+|++|++||+.++||+|.|.+.|++-
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34567799999999999999999999999999999999754
No 32
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=99.12 E-value=4.8e-11 Score=92.30 Aligned_cols=42 Identities=31% Similarity=0.545 Sum_probs=39.1
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
+..++++|++|++|||+|++|+.||++++||+++|+||||++
T Consensus 160 ~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~~ 201 (201)
T 3k9o_A 160 SPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLSN 201 (201)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHC
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 446799999999999999999999999999999999999974
No 33
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=99.06 E-value=1.4e-10 Score=75.91 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=38.5
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
....|+.|.+||+|||+|+.|++||..++||+|.|.+.|++-
T Consensus 4 ~~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 4 SPQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999864
No 34
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=83.87 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=38.9
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHcCCCC
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIPA 82 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~-n~erAvE~L~~giP~ 82 (129)
..++.+++|++|||++..|++||+.++| |++.|++||+.|.++
T Consensus 2 ~d~~~l~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 2 IDESSVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp CCTHHHHHHHTTSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 3567899999999999999999999977 999999999999554
No 35
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.01 E-value=4.5e-10 Score=81.36 Aligned_cols=42 Identities=24% Similarity=0.510 Sum_probs=39.7
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
..++.|++|++| ||++++|+.||..++||+++|+++||+|.+
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~ 80 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNP 80 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 458899999999 999999999999999999999999999965
No 36
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.97 E-value=1e-09 Score=69.44 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
|...|+.|..|++|||+++.|++||-.+.||+|.|.+.|++-
T Consensus 1 ~~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 1 GSQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp CCHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 456789999999999999999999999999999999998753
No 37
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.96 E-value=4.4e-10 Score=82.09 Aligned_cols=42 Identities=26% Similarity=0.464 Sum_probs=39.0
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
+++..+.|++|++|||+++.|++||+++++|+++|+||||.+
T Consensus 5 ~~~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 5 SPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 445677899999999999999999999999999999999987
No 38
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.92 E-value=1.9e-10 Score=97.11 Aligned_cols=42 Identities=19% Similarity=0.300 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
.+++++|++|++|||+|++|++||++|+||+++|++|||+|.
T Consensus 323 ~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 323 PQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQN 364 (368)
T ss_dssp TTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhhCc
Confidence 457889999999999999999999999999999999999984
No 39
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.86 E-value=1.7e-09 Score=83.77 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.++.+++|++|++|||+|+.|++||.+|++|++.|++|||++
T Consensus 127 tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 455678999999999999999999999999999999999987
No 40
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.85 E-value=3.3e-09 Score=68.89 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=39.9
Q ss_pred cCCCchHHHHHHHHHcCC-ChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 36 LMGDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 36 ~~g~~~ee~I~~L~eMGF-~reqv~~ALras~~n~erAvE~L~~g 79 (129)
++...+..++++|.|||| +++.-++||++.+||+++||+.|+..
T Consensus 4 ~~ee~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 4 GSSGQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp SSCTTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CHHHhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345667889999999999 89999999999999999999999976
No 41
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=98.73 E-value=1e-08 Score=82.76 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=38.6
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
...++++|++|++|||+|++|+.||+..+||.++|+|+||+
T Consensus 212 ~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 44678999999999999999999999999999999999996
No 42
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.59 E-value=7.3e-08 Score=62.71 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=36.0
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHc
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLIT 78 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~-n~erAvE~L~~ 78 (129)
......+++|++|||+++.|.+||++++| .++.|+|||..
T Consensus 7 ~vn~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45566799999999999999999999988 89999999974
No 43
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=98.12 E-value=1.7e-06 Score=78.99 Aligned_cols=43 Identities=35% Similarity=0.536 Sum_probs=39.3
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
+...++.|..|.+|||+++++++||++.+||++||+||||+++
T Consensus 717 ~~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs~~ 759 (854)
T 3ihp_A 717 DPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHI 759 (854)
T ss_dssp --CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhcCc
Confidence 4567899999999999999999999999999999999999983
No 44
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=98.06 E-value=5.3e-07 Score=71.15 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 41 YGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 41 ~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.+++|++|++|||+++++++||+..+||.++|+|.||+|
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 478999999999999999999999999999999999987
No 45
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.76 E-value=3e-05 Score=50.49 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=38.0
Q ss_pred CchHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 39 DEYGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 39 ~~~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
...|+.|++|.+| .++++.++.+|++++||+|+|++-|++.
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4578999999999 7889999999999999999999999976
No 46
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.62 E-value=8.8e-05 Score=46.90 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=36.3
Q ss_pred hHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 41 YGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 41 ~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.++.|+.|.|| .-++..++.+|++++||.|+|++-|+++
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 47889999999 7889999999999999999999999977
No 47
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.54 E-value=0.00013 Score=48.56 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=35.1
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
...+.|..|.++ |....+|++||..++||++.|++||-.
T Consensus 8 it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 8 SSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp CCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345779999998 999999999999999999999999963
No 48
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.38 E-value=0.00072 Score=45.06 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=39.5
Q ss_pred ccCCCchHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 35 LLMGDEYGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 35 ~~~g~~~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
-......++.+++|.+| -++++.++..|++++||+|+|++-|++-
T Consensus 12 ~~~~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 12 QVRRLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CCCCCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34567789999999999 5689999999999999999999999864
No 49
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=97.32 E-value=0.00018 Score=65.74 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=37.9
Q ss_pred CchHHHHHHHHHcCCChHHHHHHHHHhCC-CHHHHHHHHHcCCCC
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIPA 82 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~ALras~~-n~erAvE~L~~giP~ 82 (129)
...++.+++|++|||++..+++||.+.+| |.|.|++||++++.+
T Consensus 650 ~~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmdd 694 (854)
T 3ihp_A 650 MLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDD 694 (854)
T ss_dssp ---CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhhccCc
Confidence 35678899999999999999999999977 599999999999654
No 50
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=97.22 E-value=0.00029 Score=55.40 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=27.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCH
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNP 69 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~ 69 (129)
..+++|++|++|||++++|+.||+..+||.
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 357899999999999999999999999986
No 51
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.13 E-value=0.0016 Score=44.07 Aligned_cols=48 Identities=10% Similarity=0.308 Sum_probs=42.2
Q ss_pred ccCCCchHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC-CCC
Q psy4260 35 LLMGDEYGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG-IPA 82 (129)
Q Consensus 35 ~~~g~~~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g-iP~ 82 (129)
..++..-++.|+++.++ -+....++++|+..++|+|+.++.||.+ +|.
T Consensus 7 ~~~~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~LPp 57 (71)
T 2di0_A 7 GMCGVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERLAP 57 (71)
T ss_dssp CCSSHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCCCT
T ss_pred CCcHHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCCCH
Confidence 44677788999999999 6899999999999999999999999987 543
No 52
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=96.94 E-value=0.0017 Score=38.80 Aligned_cols=39 Identities=13% Similarity=0.070 Sum_probs=35.0
Q ss_pred hHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 41 YGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 41 ~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.++.|+++++. |-+++.|+.-|+.++||+++||.-.|.+
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~ 44 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYED 44 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 56789999987 8999999999999999999999877754
No 53
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=96.84 E-value=0.00081 Score=43.29 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHcCCChHHH--HHHHHHhCCCHHHHHHHHH
Q psy4260 39 DEYGRMVQNIVDMGYERSAV--TEALRASFNNPDRAVEYLI 77 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv--~~ALras~~n~erAvE~L~ 77 (129)
+.-.+.|.++++|||+.+-. .+.|+..+||+.+|+|-|-
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 34577899999999998877 4899999999999999764
No 54
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=96.68 E-value=0.00029 Score=47.82 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=25.3
Q ss_pred CCCCCCCCCCccchhhhh------hhhhhhcCCce
Q psy4260 94 NEPQGNNIKQFSSVKEIE------IPNLMQGDNKV 122 (129)
Q Consensus 94 ~~~~~~n~PqF~~~r~~~------lp~llq~~~~~ 122 (129)
...++|++|+|..||++| |+.|||+.++-
T Consensus 5 ~l~~Lr~~Pqf~qlR~~vqqNP~lL~~lLqqL~~~ 39 (72)
T 1pve_A 5 PLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRE 39 (72)
T ss_dssp TTGGGTTCTTTTTHHHHHTTCGGGHHHHHHHHHTT
T ss_pred hHHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhH
Confidence 356799999999999999 99999987763
No 55
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.60 E-value=0.0029 Score=40.89 Aligned_cols=41 Identities=24% Similarity=0.343 Sum_probs=36.3
Q ss_pred CchHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 39 DEYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 39 ~~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
...+++|++++++ |-+++.|+.-|++++||+++||...|.+
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4457789999987 8999999999999999999999977765
No 56
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.21 E-value=0.014 Score=38.34 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHHc-C-CChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDM-G-YERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eM-G-F~reqv~~ALras~~n~erAvE~L~~g 79 (129)
....+++|++++++ | -+.+.|+.-|+.++||++.||.-.|.+
T Consensus 15 s~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 15 TQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred ChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34467789999997 8 789999999999999999999988866
No 57
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=96.12 E-value=0.0003 Score=46.24 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=24.6
Q ss_pred CCCCCCCCCccchhhhh------hhhhhhcCCce
Q psy4260 95 EPQGNNIKQFSSVKEIE------IPNLMQGDNKV 122 (129)
Q Consensus 95 ~~~~~n~PqF~~~r~~~------lp~llq~~~~~ 122 (129)
..++|++|+|..||++| |+.|||+.++-
T Consensus 4 l~~Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~ 37 (61)
T 2f4m_B 4 LEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRE 37 (61)
T ss_dssp GGGGTTCHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHHCHHHHHHHHHHHHhH
Confidence 46789999999999999 99999987753
No 58
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.11 E-value=0.019 Score=37.63 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 43 RMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 43 e~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
+.|+++++. |=+++.|+.-|++++||.|+||+-.|..
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 789999988 8999999999999999999999988865
No 59
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=95.94 E-value=0.0068 Score=46.71 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.6
Q ss_pred HHHHHHHHHcC-CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 42 GRMVQNIVDMG-YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 42 ee~I~~L~eMG-F~reqv~~ALras~~n~erAvE~L 76 (129)
..++..|++.| |++++|.+||+.++||+++|+-.|
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 45889999999 789999999999999999999655
No 60
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=95.89 E-value=0.0096 Score=49.00 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=33.9
Q ss_pred HHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 42 GRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 42 ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
-..|++|-++ |..--+|++||..++||.|.|+|||-.
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3568899998 999999999999999999999999984
No 61
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=95.82 E-value=0.011 Score=42.09 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=32.4
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L 76 (129)
..++.|+.+++- |-+|++|++||+.++||+=.|+-+|
T Consensus 64 i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 64 IPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 456778888764 9999999999999999999999776
No 62
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=95.71 E-value=0.014 Score=46.00 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=33.0
Q ss_pred HHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHH
Q psy4260 42 GRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLI 77 (129)
Q Consensus 42 ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~ 77 (129)
-..|..|-++ |..--+|.+||..++||.|.|++||-
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR 40 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLR 40 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3568889888 99999999999999999999999996
No 63
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=95.18 E-value=0.032 Score=34.42 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=32.1
Q ss_pred chHHHHHHHHHc-CCCh-HHHHHHHHHhCCCHHHHHH
Q psy4260 40 EYGRMVQNIVDM-GYER-SAVTEALRASFNNPDRAVE 74 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~r-eqv~~ALras~~n~erAvE 74 (129)
..+++|.+++++ |-+. ++|+.=|.+++||.+.||.
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 468899999999 9886 9999999999999999985
No 64
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=94.85 E-value=0.0021 Score=49.59 Aligned_cols=30 Identities=7% Similarity=0.192 Sum_probs=22.2
Q ss_pred cCCCCCCC-CCCCccchhhhh------hhhhhhcCCc
Q psy4260 92 AANEPQGN-NIKQFSSVKEIE------IPNLMQGDNK 121 (129)
Q Consensus 92 a~~~~~~~-n~PqF~~~r~~~------lp~llq~~~~ 121 (129)
.....++| |+|+|.+||++| |+.|||+.++
T Consensus 22 ~~~l~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~ 58 (171)
T 2qsf_X 22 GGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISA 58 (171)
T ss_dssp ------CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred cCCHHHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 35568899 999999999999 9999997765
No 65
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=93.67 E-value=0.027 Score=36.20 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=30.4
Q ss_pred chHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 40 EYGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 40 ~~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
+.++.+++|.+| .++++-++..|++.+||.+.||+-|+.
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356789999999 799999999999999999999998874
No 66
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=92.65 E-value=0.31 Score=31.33 Aligned_cols=28 Identities=7% Similarity=0.224 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHh
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRAS 65 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras 65 (129)
+...++.++-|+.+||++.++.+|++..
T Consensus 14 ~~~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 14 SEAAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3456789999999999999999999876
No 67
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=92.00 E-value=0.4 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=33.9
Q ss_pred chHHHHHHHHH--cCCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 40 EYGRMVQNIVD--MGYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 40 ~~ee~I~~L~e--MGF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
..|+.|.+... -|-+|+-.++-|+.++-|++.||+-|++.
T Consensus 8 vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 8 IPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp SCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 45777876544 49999999999999999999999999987
No 68
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=90.64 E-value=0.58 Score=29.89 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=30.8
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHH
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEY 75 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~ 75 (129)
..++.|..+... |-..+-+.++|..++||.++|+.-
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~ 42 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQA 42 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 456677777766 999999999999999999999953
No 69
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=90.35 E-value=1.3 Score=30.42 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=33.0
Q ss_pred chHHHHHHHHHc-CCChHHHH-HHHHHhCCCHHHHHHHHHcC
Q psy4260 40 EYGRMVQNIVDM-GYERSAVT-EALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~-~ALras~~n~erAvE~L~~g 79 (129)
..+-.+++|.|. |...-++. .||++++||+..||.+|...
T Consensus 23 ~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 23 HQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp CHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 345578999998 88776665 49999999999999999865
No 70
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=88.55 E-value=0.69 Score=32.01 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.++.+.+.|.-+++.|+++|++++|+.
T Consensus 49 V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 49 VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 899999999999999999999999965
No 71
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=86.22 E-value=0.93 Score=36.69 Aligned_cols=40 Identities=8% Similarity=0.068 Sum_probs=35.8
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
..++.|++++++ |-++..|+.-|+.++||.+.|++-.|..
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 367789999998 9999999999999999999999977755
No 72
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=84.48 E-value=1.5 Score=27.08 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L 76 (129)
|+++-+++||+.++||..+|++.|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 688999999999999999999866
No 73
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=83.15 E-value=1.5 Score=27.87 Aligned_cols=35 Identities=9% Similarity=-0.114 Sum_probs=29.7
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHH
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVE 74 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE 74 (129)
..++.|.+|... |-..+-+.++|..++||.++|+.
T Consensus 5 ~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~ 40 (57)
T 2jp7_A 5 VQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIK 40 (57)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHH
Confidence 345667777666 99999999999999999999995
No 74
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=81.69 E-value=0.23 Score=48.12 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 44 MVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 44 ~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
.|++|-++ |..--+|++||..++||.|.|+|||-.
T Consensus 8 ~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 8 LVKELRERTGAGMMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp CTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47888888 888889999999999999999999974
No 75
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.29 E-value=5.7 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=36.6
Q ss_pred CCchHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.+..+..++++.+| -++++.++.-|+.++ +++..+|-++.|
T Consensus 10 ~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (61)
T 2ekf_A 10 DVQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEG 52 (61)
T ss_dssp CCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 45678889999999 699999999999886 999999999988
No 76
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.83 E-value=7 Score=25.10 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=36.7
Q ss_pred CCchHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 38 GDEYGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 38 g~~~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.+..+..|+++.+| -++++.++.-|+.++ ++|..+|-++.|
T Consensus 10 ~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 45678889999999 699999999999998 999999999987
No 77
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=79.19 E-value=5.4 Score=25.78 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=33.8
Q ss_pred hHHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 41 YGRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 41 ~ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.+..|+++.+| -+++++++.-|+.+ |++|..+|-+++|
T Consensus 17 l~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 17 LNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 46678888888 69999999999998 9999999999877
No 78
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=78.18 E-value=2.3 Score=32.60 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYLI 77 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L~ 77 (129)
++.+.|++||+.+.||.++||..+.
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~ci 99 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEECV 99 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHHH
Confidence 8889999999999999999997653
No 79
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=77.89 E-value=1.4 Score=29.62 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L 76 (129)
|+++.+++||+.++||..+|.+.|
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 567888999999999999999876
No 80
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=77.15 E-value=4.2 Score=31.25 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=23.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHh
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRAS 65 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras 65 (129)
..++.++-|+.+||++.++.+|+++.
T Consensus 159 ~~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 159 AEQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35789999999999999999999987
No 81
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=78.34 E-value=0.51 Score=35.08 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=30.3
Q ss_pred HHHHHHHHHc-CCC-hHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 42 GRMVQNIVDM-GYE-RSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 42 ee~I~~L~eM-GF~-reqv~~ALras~~n~erAvE~L~~g 79 (129)
+-.+++|-|. |.. ..--..||++++||+..||.+|-..
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 3357888888 777 4445669999999999999988765
No 82
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=74.79 E-value=5.7 Score=30.93 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.3
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHh
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRAS 65 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras 65 (129)
..++.++-|+.+||.+.++.+|+++.
T Consensus 163 ~~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 163 VRSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34789999999999999999999876
No 83
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=73.69 E-value=2.9 Score=29.16 Aligned_cols=36 Identities=19% Similarity=0.424 Sum_probs=26.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHh-------CCCHHHHHHHHHcC
Q psy4260 44 MVQNIVDMGYERSAVTEALRAS-------FNNPDRAVEYLITG 79 (129)
Q Consensus 44 ~I~~L~eMGF~reqv~~ALras-------~~n~erAvE~L~~g 79 (129)
.|+..++|||++..++++++.- |..++.-|.-|+..
T Consensus 30 vV~~alemGf~~~~V~~~v~~ki~~sG~~y~Tve~Lv~~ll~~ 72 (104)
T 2kna_A 30 MVQEAIRMGFSFKDIKKIMEEKIQISGSNYKSLEVLVADLVNA 72 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 5888999999999999988762 33455555555544
No 84
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=72.84 E-value=8.5 Score=27.81 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=28.7
Q ss_pred HHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCC
Q psy4260 48 IVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80 (129)
Q Consensus 48 L~eMGF~reqv~~ALras~~n~erAvE~L~~gi 80 (129)
+.+..-+--.|.+||-++.||.+.|..||+++.
T Consensus 21 Meef~~DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 21 MEKFNLDLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHhhhHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 445577888899999999999999999999884
No 85
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=72.40 E-value=6.7 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=33.6
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
.++..++.+..|||++++.+..|+.-.+|.-.|.=+|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ll~ 326 (328)
T 3fe3_A 288 SDQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLLG 326 (328)
T ss_dssp CCHHHHHHHHHTTCCHHHHHHHHHTTCCSHHHHHHHHHT
T ss_pred ccHHHHHHHHHCCCCHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 456678999999999999999999999999888866653
No 86
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=67.63 E-value=1.8 Score=28.64 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L 76 (129)
|+++-+++||+.++||..+|.+.|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 789999999999999999999865
No 87
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=66.34 E-value=3.6 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L 76 (129)
|+++-++.||+.++||..+|.+.|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 678889999999999999999876
No 88
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=66.18 E-value=7.7 Score=31.87 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=25.0
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCCCH
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFNNP 69 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~n~ 69 (129)
..+..|..|++|||+.+++.++|...-+=.
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P~il 74 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRRGAS 74 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCSSCC
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCcccc
Confidence 357788999999999999999998876643
No 89
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=65.77 E-value=2.9 Score=25.81 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L 76 (129)
|+++-+.+||+.+ ||..+|.+.|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 6788889999999 9999999865
No 90
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=55.04 E-value=2.5 Score=32.28 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=0.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHh
Q psy4260 41 YGRMVQNIVDMGYERSAVTEALRAS 65 (129)
Q Consensus 41 ~ee~I~~L~eMGF~reqv~~ALras 65 (129)
.++.++-|+.+||++.++.+|+++.
T Consensus 146 ~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 146 AEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4678999999999999999999886
No 91
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=54.26 E-value=9.9 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.501 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHH-------hCCCHHHHHHHHHc
Q psy4260 42 GRMVQNIVDMGYERSAVTEALRA-------SFNNPDRAVEYLIT 78 (129)
Q Consensus 42 ee~I~~L~eMGF~reqv~~ALra-------s~~n~erAvE~L~~ 78 (129)
...|+..++|||++..|+++++. .+..++.-|+-|+.
T Consensus 120 ~~~v~~~l~mGf~~~~v~~~~~~~~~~~g~~~~~~~~lv~~~l~ 163 (345)
T 3t6p_A 120 TPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSALLN 163 (345)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHH
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHh
Confidence 45689999999999999998863 23345555554543
No 92
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=50.54 E-value=8.3 Score=30.86 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHcCCChHHHHHH----HHHhCCCHHHHHHHHHc
Q psy4260 39 DEYGRMVQNIVDMGYERSAVTEA----LRASFNNPDRAVEYLIT 78 (129)
Q Consensus 39 ~~~ee~I~~L~eMGF~reqv~~A----Lras~~n~erAvE~L~~ 78 (129)
.+.+..|+.|.++|++.++++++ |..+-.|++.-++||.+
T Consensus 17 ~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~~~~~vl~fL~~ 60 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLS 60 (343)
T ss_dssp ---CCHHHHHHHHTCCHHHHHHHCGGGGGCSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHcCCCHHHHHHhCchhhccCcccHHHHHHHHHH
Confidence 34556677788888887777654 12233467777777764
No 93
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=48.32 E-value=25 Score=23.39 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=26.9
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHhCCC
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNN 68 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras~~n 68 (129)
....+.+|+-|..-|-+.+++..||+.++.+
T Consensus 32 ~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~ 62 (70)
T 2w84_A 32 QSPLATRRAFLKKKGLTDEEIDMAFQQSGTA 62 (70)
T ss_dssp GSCHHHHHHHHHHTTCCHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHHHcCCCHHHHHHHHHHccCC
Confidence 4456889999999999999999999998654
No 94
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=43.55 E-value=28 Score=21.96 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=24.4
Q ss_pred CCchHHHHHHHHHcCCChHHHHHHHHHh
Q psy4260 38 GDEYGRMVQNIVDMGYERSAVTEALRAS 65 (129)
Q Consensus 38 g~~~ee~I~~L~eMGF~reqv~~ALras 65 (129)
....+.+|+=|..-|.+.+++..||+++
T Consensus 27 ~sp~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 27 QSPLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp GSCHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4456889999999999999999999875
No 95
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=43.49 E-value=4.9 Score=31.49 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred chHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHH
Q psy4260 40 EYGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVE 74 (129)
Q Consensus 40 ~~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE 74 (129)
..++.|.++.+. |-..+-+.++|..++||.++|+.
T Consensus 197 ~q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~ 232 (250)
T 1jkg_B 197 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQ 232 (250)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH
Confidence 344567777666 89999999999999999999995
No 96
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=40.88 E-value=12 Score=29.12 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.8
Q ss_pred CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 53 YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 53 F~reqv~~ALras~~n~erAvE~L 76 (129)
|+++..++||+.++||..+|.+.|
T Consensus 268 ~e~~~i~~~l~~~~gn~~~aA~~L 291 (304)
T 1ojl_A 268 VEKEVILAALEKTGGNKTEAARQL 291 (304)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 678888999999999999999877
No 97
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=38.67 E-value=12 Score=29.50 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=8.1
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 43 RMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 43 e~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
+....+++. |-++++++++|+++++++-.|+-.++.|++
T Consensus 246 r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~ 285 (306)
T 1nri_A 246 RAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILSTLS 285 (306)
T ss_dssp HHHHHHHHHSCCCC--------------------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHhCCC
Confidence 344555554 899999999999999999999987777754
No 98
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=33.78 E-value=28 Score=27.40 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHc
Q psy4260 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78 (129)
Q Consensus 45 I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~ 78 (129)
+..|++-|++.+.++..+|+-+-..+|.++|...
T Consensus 126 l~~lv~~G~~~~~~v~l~RalGq~~aRLA~Wq~e 159 (222)
T 2ev1_A 126 AQRFVELGLNPDQVVLVVRVLAEGLSHAAEAMRY 159 (222)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999999643
No 99
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=33.49 E-value=1.3e+02 Score=25.75 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHcCCCCCcCCCCCCccCCCCCCC---CCCCccchh-hhh-------hhhhhhcCC
Q psy4260 67 NNPDRAVEYLITGIPAAVVGEEAPVAANEPQGN---NIKQFSSVK-EIE-------IPNLMQGDN 120 (129)
Q Consensus 67 ~n~erAvE~L~~giP~~~~~~~~~~a~~~~~~~---n~PqF~~~r-~~~-------lp~llq~~~ 120 (129)
.|++ .++-|+.++|+.....+ ....|+ .-|||.+=- -+. |+.||+|.|
T Consensus 306 ~d~e-~~erL~~~LP~~~~~~~-----t~e~L~e~l~SPQF~QaL~~fs~AL~sGqL~pll~qfg 364 (411)
T 2kr0_A 306 ANAD-VQERLLPYLPSGESLPQ-----TADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFG 364 (411)
T ss_dssp TSHH-HHHHHGGGCCSSCCCCC-----SHHHHTTSCCSHHHHHHHHHHHHHHHHTSSTHHHHHHT
T ss_pred cCHH-HHHHHHhhCCCCcCcCC-----CHHHHHHHhcCHHHHHHHHHHHHHHhcCCchHHHHHhC
Confidence 5666 48899999997532111 112233 668886421 111 777777643
No 100
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=28.28 E-value=25 Score=27.40 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=28.6
Q ss_pred chHHHHHHH-HHcCCChHHHHHHHHHhCCCHHHHHHHHH
Q psy4260 40 EYGRMVQNI-VDMGYERSAVTEALRASFNNPDRAVEYLI 77 (129)
Q Consensus 40 ~~ee~I~~L-~eMGF~reqv~~ALras~~n~erAvE~L~ 77 (129)
.+...+..+ ..|||+++.++++|+.-..|.-.|.=+|+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~y~ll 319 (336)
T 3h4j_B 281 ADSRIVSKLGEAMGFSEDYIVEALRSDENNEVKEAYNLL 319 (336)
T ss_dssp CCHHHHHHHHHTTCCCHHHHHHHTTSSSCCSSTTHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHhcCCCCHHHHHHHHH
Confidence 345566666 46999999999999988777777664554
No 101
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=27.38 E-value=33 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.048 Sum_probs=22.1
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHh
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRAS 65 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras 65 (129)
..++.++.+.++||++++++.||...
T Consensus 177 ~~~~~~~l~~~~G~~~e~~~~~l~~~ 202 (212)
T 1v77_A 177 YPRDLISLGVVIGMEIPQAKASISMY 202 (212)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHTTTHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45778899999999999999998753
No 102
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=27.14 E-value=61 Score=26.32 Aligned_cols=31 Identities=3% Similarity=0.116 Sum_probs=22.6
Q ss_pred ccCCCchHHHHHH-H-HHcCCChHHHHHHHHHh
Q psy4260 35 LLMGDEYGRMVQN-I-VDMGYERSAVTEALRAS 65 (129)
Q Consensus 35 ~~~g~~~ee~I~~-L-~eMGF~reqv~~ALras 65 (129)
+.-+..+.+.+.. | .++||.++.|+++|++-
T Consensus 295 l~~~~pd~~~l~~fl~~~~~f~~~rv~~~~~~l 327 (341)
T 3q8k_A 295 LKWSEPNEEELIKFMCGEKQFSEERIRSGVKRL 327 (341)
T ss_dssp CCCCCCCHHHHHHHHTTTTCCCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4445566566555 5 48999999999998864
No 103
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=25.99 E-value=1.7e+02 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.8
Q ss_pred chHHHHHHHHHc----C----CChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 40 EYGRMVQNIVDM----G----YERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 40 ~~ee~I~~L~eM----G----F~reqv~~ALras~~n~erAvE~L 76 (129)
..++.|++|.+. | .+..-..|=||+.++|+++|.+-|
T Consensus 38 ~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL 82 (320)
T 3q8g_A 38 EQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMF 82 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 345566665444 4 566788999999999999999766
No 104
>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}
Probab=25.72 E-value=46 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.093 Sum_probs=16.2
Q ss_pred cCCChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 51 MGYERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 51 MGF~reqv~~ALras~~n~erAvE~L 76 (129)
.|.+.+++++..++++.+.+...++|
T Consensus 126 ~g~~~~~a~~~~~~~g~~l~~~~~~l 151 (156)
T 2f46_A 126 EGMPVDEIIRRAQAAGVNLENFRERL 151 (156)
T ss_dssp TTCCHHHHHHHHHHTTCCCGGGHHHH
T ss_pred cCCCHHHHHHHHHHcCCCcHHHHHHH
Confidence 36666666666666666666555554
No 105
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=24.31 E-value=19 Score=24.85 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH-----HHHHcCCCCC
Q psy4260 42 GRMVQNIVDMGYERSAVTEALRASFNNPDRAV-----EYLITGIPAA 83 (129)
Q Consensus 42 ee~I~~L~eMGF~reqv~~ALras~~n~erAv-----E~L~~giP~~ 83 (129)
.+.|++|++-|-+-..++.-|+...++.+.|+ +.|+.|+|+.
T Consensus 10 n~IVqQLv~AGADLA~vrtmlrnvm~g~~valsr~e~~il~qHFPnm 56 (85)
T 3hgl_A 10 NSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNM 56 (85)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCchHhhhHHHHHHHHHHChhh
Confidence 56799999999999999988887655333332 3466666653
No 106
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=23.99 E-value=67 Score=23.29 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhCCCHHHHHHHHHcCCC
Q psy4260 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIP 81 (129)
Q Consensus 43 e~I~~L~eMGF~reqv~~ALras~~n~erAvE~L~~giP 81 (129)
+.|.+|+.-|==++.-.+||.++ |.+ -++|||+.++
T Consensus 5 ~~I~~Ll~~g~~eeAf~~aL~ss--d~~-lv~~lc~~~d 40 (139)
T 2vxg_A 5 DSIKQLLMAGQINKAFHQALLAN--DLG-LVEFTLRHTD 40 (139)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT--CHH-HHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhC--cHH-HHHHHHHcCC
Confidence 45899999997777888999888 777 8899998854
No 107
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=23.98 E-value=27 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.417 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCHHHHH-----HHHHcCCCC
Q psy4260 42 GRMVQNIVDMGYERSAVTEALRASFNNPDRAV-----EYLITGIPA 82 (129)
Q Consensus 42 ee~I~~L~eMGF~reqv~~ALras~~n~erAv-----E~L~~giP~ 82 (129)
+..|++|++-|-+-..++.-|+-..++.+.|+ +.|+.|+|+
T Consensus 8 n~IVqQlv~aGadLa~~rtmlrn~m~g~~valsr~eq~Il~qHFPn 53 (94)
T 3tjy_A 8 NRIVQQLVEAGADLANIRTMFRNMLRGEEMILSRAEQNVFLQHFPD 53 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHcCCchhhhHHHHHHHHHHCcc
Confidence 55799999999999999999998877665554 345566554
No 108
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=23.79 E-value=92 Score=23.83 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=28.9
Q ss_pred chHHHHHHH-HHcCCChHH---HHHHHHHhCCC-HHHHHHHHHcC--CCCCc
Q psy4260 40 EYGRMVQNI-VDMGYERSA---VTEALRASFNN-PDRAVEYLITG--IPAAV 84 (129)
Q Consensus 40 ~~ee~I~~L-~eMGF~req---v~~ALras~~n-~erAvE~L~~g--iP~~~ 84 (129)
.-+..|+.| .|-||.+.= ++.||+..-.+ +..-+++|..| ||++.
T Consensus 62 ~~~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~ 113 (168)
T 3cz6_A 62 QAEKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNV 113 (168)
T ss_dssp CHHHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTC
T ss_pred hHHHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCC
Confidence 346678888 788999754 44455555555 55566777766 66543
No 109
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}
Probab=23.04 E-value=76 Score=25.14 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=37.8
Q ss_pred ccCCCchHHHHHHHHHcC-CChHHHHHHHHHhCCCHHHHHHHHH
Q psy4260 35 LLMGDEYGRMVQNIVDMG-YERSAVTEALRASFNNPDRAVEYLI 77 (129)
Q Consensus 35 ~~~g~~~ee~I~~L~eMG-F~reqv~~ALras~~n~erAvE~L~ 77 (129)
-.-|...+..+..|.+.| .+++++..||+++..--..|+++|+
T Consensus 160 sFig~ar~qLl~aL~~l~ll~~~~~~~a~~~~~~~~~~~~~~~~ 203 (214)
T 3kvh_A 160 AFVSTAKCQLLFALKVLNMMPEEKLVEALAAATEKQKKALEKLL 203 (214)
T ss_dssp CBCTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCcchhHHHhhC
Confidence 334777888999999999 8999999999999999999999996
No 110
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=21.60 E-value=1.2e+02 Score=17.40 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHH
Q psy4260 41 YGRMVQNIVDMGYERSAVTEALR 63 (129)
Q Consensus 41 ~ee~I~~L~eMGF~reqv~~ALr 63 (129)
.++.+.-|.+-|.+++.-++||.
T Consensus 9 Q~eLL~aLL~SGlsKe~LiqaL~ 31 (32)
T 1g2y_A 9 QTEMLAALLESGLSKEALIQALG 31 (32)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcHHHHHHHhc
Confidence 46778889999999999999873
No 111
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=21.46 E-value=90 Score=22.27 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=28.0
Q ss_pred ccccCCCchHHHHHHHHHc-CCChHHHHHHHHH
Q psy4260 33 STLLMGDEYGRMVQNIVDM-GYERSAVTEALRA 64 (129)
Q Consensus 33 s~~~~g~~~ee~I~~L~eM-GF~reqv~~ALra 64 (129)
..+..|..+++....|+++ +..-++++.||+.
T Consensus 23 ~~LipG~vsee~F~LLlelS~IrSekII~ALrd 55 (111)
T 3m8j_A 23 SALSSGSMSEEQFFLLIGISSIHSDRVILAMKD 55 (111)
T ss_dssp HCCCTTCSCHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred CccCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 3467899999999999999 6999999999985
No 112
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=21.36 E-value=78 Score=25.81 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=29.8
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHhCC-------CHHHHHHHHHc
Q psy4260 40 EYGRMVQNIVDMGYERSAVTEALRASFN-------NPDRAVEYLIT 78 (129)
Q Consensus 40 ~~ee~I~~L~eMGF~reqv~~ALras~~-------n~erAvE~L~~ 78 (129)
.-...|..|..+||+.+.+.+.|+++-. ++..-++||.+
T Consensus 77 ~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~ 122 (335)
T 4fp9_B 77 QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQK 122 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHH
Confidence 3466899999999999999999998744 34445677753
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.99 E-value=1.4e+02 Score=23.17 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=27.1
Q ss_pred hHHHHHHHHHc-CCChHHHHHHHHHhCCCHHHHHHHH
Q psy4260 41 YGRMVQNIVDM-GYERSAVTEALRASFNNPDRAVEYL 76 (129)
Q Consensus 41 ~ee~I~~L~eM-GF~reqv~~ALras~~n~erAvE~L 76 (129)
.++..+.|... .++.+.+...++.++||+.+|+++|
T Consensus 169 ~~~~~~~L~~~~~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 169 EQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 34444555555 4888888889999999999998755
No 114
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=20.76 E-value=1.8e+02 Score=18.74 Aligned_cols=35 Identities=11% Similarity=0.269 Sum_probs=27.7
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHhCCCHHHHHHHHHcC
Q psy4260 42 GRMVQNIVDM--GYERSAVTEALRASFNNPDRAVEYLITG 79 (129)
Q Consensus 42 ee~I~~L~eM--GF~reqv~~ALras~~n~erAvE~L~~g 79 (129)
.+.|+.|.+. |+++.+|..+|.+. .+.-.+.|..|
T Consensus 4 ~eli~~ia~~~~~ls~~~~~~~l~~~---~~~i~~~L~~g 40 (94)
T 1owf_B 4 SELIERLATQQSHIPAKTVEDAVKEM---LEHMASTLAQG 40 (94)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHH---HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH---HHHHHHHHhCC
Confidence 4677888765 89999999999988 56666777766
Done!