AmiGO: BLAST Results


BLAST match view associations BLAST with Rad23 Rad23 Rad23	protein from Drosophila melanogaster	1.8e-11
BLAST match view associations BLAST with Rad23a Rad23a Rad23a RAD23 homolog A (S. cerevisiae)	gene from Rattus norvegicus	3.3e-11
BLAST match view associations BLAST with RAD23A RAD23A RAD23A UV excision repair protein RAD23 homolog A	protein from Bos taurus	3.6e-11
BLAST match view associations BLAST with RAD23A RAD23A RAD23A Uncharacterized protein	protein from Canis lupus familiaris	3.6e-11
BLAST match view associations BLAST with rad23aa rad23aa rad23aa RAD23 homolog Aa (S. cerevisiae)	gene_product from Danio rerio	3.6e-11
BLAST match view associations BLAST with RAD23A RAD23A RAD23A UV excision repair protein RAD23 homolog A	protein from Homo sapiens	3.6e-11
BLAST match view associations BLAST with Rad23a Rad23a Rad23a RAD23a homolog (S. cerevisiae)	protein from Mus musculus	3.6e-11
BLAST match view associations BLAST with LOC100524483 LOC100524483 LOC100524483 Uncharacterized protein	protein from Sus scrofa	5.1e-11
BLAST match view associations BLAST with rad23b rad23b rad23b RAD23 homolog B (S. cerevisiae)	gene_product from Danio rerio	5.2e-11
BLAST match view associations BLAST with zgc:123349 zgc:123349 zgc:123349 rad23ab	gene_product from Danio rerio	9.7e-11
BLAST match view associations BLAST with RAD23B RAD23B RAD23B Uncharacterized protein	protein from Canis lupus familiaris	9.9e-11
BLAST match view associations BLAST with RAD23B RAD23B RAD23B UV excision repair protein RAD23 homolog B	protein from Bos taurus	1.0e-10
BLAST match view associations BLAST with RAD23B RAD23B RAD23B Uncharacterized protein	protein from Sus scrofa	1.0e-10
BLAST match view associations BLAST with RAD23B RAD23B RAD23B UV excision repair protein RAD23 homolog B	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with Rad23b Rad23b Rad23b RAD23 homolog B (S. cerevisiae)	gene from Rattus norvegicus	1.0e-10
BLAST match view associations BLAST with Rad23b Rad23b Rad23b RAD23b homolog (S. cerevisiae)	protein from Mus musculus	1.0e-10
BLAST match view associations BLAST with RAD23B RAD23B RAD23B Uncharacterized protein	protein from Gallus gallus	3.9e-10
BLAST match view associations BLAST with RAD23A RAD23A RAD23A AT1G16190	protein from Arabidopsis thaliana	9.5e-09
BLAST match view associations BLAST with RAD23 RAD23 RAD23 Protein with ubiquitin-like N terminus	gene from Saccharomyces cerevisiae	1.4e-08
BLAST match view associations BLAST with RAD23A RAD23A RAD23A UV excision repair protein RAD23 homolog A	protein from Homo sapiens	2.0e-08
BLAST match view associations BLAST with RAD23D RAD23D RAD23D AT5G38470	protein from Arabidopsis thaliana	5.8e-08
BLAST match view associations BLAST with RAD23C RAD23C RAD23C RADIATION SENSITIVE23C	protein from Arabidopsis thaliana	7.0e-08
BLAST match view associations BLAST with PF10_0114 PF10_0114 PF10_0114 DNA repair protein RAD23, putative	gene from Plasmodium falciparum	3.5e-07
BLAST match view associations BLAST with PF10_0114 PF10_0114 PF10_0114 DNA repair protein RAD23, putative	protein from Plasmodium falciparum 3D7	3.5e-07
BLAST match view associations BLAST with rcbA rcbA rcbA repC-binding protein A	gene from Dictyostelium discoideum	2.1e-06
BLAST match view associations BLAST with CG10694 CG10694 CG10694	protein from Drosophila melanogaster	5.3e-06
BLAST match view associations BLAST with rad-23 rad-23 rad-23	gene from Caenorhabditis elegans	1.1e-05
BLAST match view associations BLAST with MGG_01656 MGG_01656 MGG_01656 UV excision repair protein Rad23	protein from Magnaporthe oryzae 70-15	1.6e-05

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy4260
        (129 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0026777 - symbol:Rad23 "Rad23" species:7227 "Droso...   164  1.8e-11   1
UNIPROTKB|K7ESE3 - symbol:RAD23A "UV excision repair prot...   160  2.2e-11   1
RGD|1309899 - symbol:Rad23a "RAD23 homolog A (S. cerevisi...   160  3.3e-11   1
UNIPROTKB|A3KMV2 - symbol:RAD23A "UV excision repair prot...   160  3.6e-11   1
UNIPROTKB|F1PTL1 - symbol:RAD23A "Uncharacterized protein...   160  3.6e-11   1
ZFIN|ZDB-GENE-040808-59 - symbol:rad23aa "RAD23 homolog A...   160  3.6e-11   1
UNIPROTKB|P54725 - symbol:RAD23A "UV excision repair prot...   160  3.6e-11   1
MGI|MGI:105126 - symbol:Rad23a "RAD23a homolog (S. cerevi...   160  3.6e-11   1
UNIPROTKB|D4AD39 - symbol:Rad23a "RAD23a homolog (S. cere...   160  3.6e-11   1
UNIPROTKB|F1SD96 - symbol:RAD23A "Uncharacterized protein...   159  5.1e-11   1
ZFIN|ZDB-GENE-040426-1487 - symbol:rad23b "RAD23 homolog ...   159  5.2e-11   1
ZFIN|ZDB-GENE-051113-160 - symbol:zgc:123349 "rad23ab" sp...   157  9.7e-11   1
UNIPROTKB|E2R4A5 - symbol:RAD23B "Uncharacterized protein...   157  9.9e-11   1
UNIPROTKB|Q29RK4 - symbol:RAD23B "UV excision repair prot...   157  1.0e-10   1
UNIPROTKB|F1SP32 - symbol:RAD23B "Uncharacterized protein...   157  1.0e-10   1
UNIPROTKB|P54727 - symbol:RAD23B "UV excision repair prot...   157  1.0e-10   1
POMBASE|SPBC2D10.12 - symbol:rhp23 "Rad23 homolog Rhp23" ...   156  1.0e-10   1
RGD|1562958 - symbol:Rad23b "RAD23 homolog B (S. cerevisi...   157  1.0e-10   1
MGI|MGI:105128 - symbol:Rad23b "RAD23b homolog (S. cerevi...   157  1.0e-10   1
UNIPROTKB|F1N9B7 - symbol:RAD23B "Uncharacterized protein...   151  3.9e-10   1
TAIR|locus:2200522 - symbol:RAD23A "RADIATION SENSITIVE23...   138  9.5e-09   1
SGD|S000000763 - symbol:RAD23 "Protein with ubiquitin-lik...   137  1.4e-08   1
UNIPROTKB|B4DDJ7 - symbol:RAD23A "cDNA FLJ51789, highly s...   128  2.0e-08   1
TAIR|locus:2177376 - symbol:RAD23D "RADIATION SENSITIVE23...   131  5.8e-08   1
TAIR|locus:2076944 - symbol:RAD23C "RADIATION SENSITIVE23...   131  7.0e-08   1
ASPGD|ASPL0000045893 - symbol:AN2304 species:162425 "Emer...   128  1.2e-07   1
GENEDB_PFALCIPARUM|PF10_0114 - symbol:PF10_0114 "DNA repa...   124  3.5e-07   1
UNIPROTKB|Q8IJS8 - symbol:PF10_0114 "DNA repair protein R...   124  3.5e-07   1
DICTYBASE|DDB_G0286357 - symbol:rcbA "repC-binding protei...   116  2.1e-06   1
FB|FBgn0039147 - symbol:CG10694 species:7227 "Drosophila ...   111  5.3e-06   1
WB|WBGene00013924 - symbol:rad-23 species:6239 "Caenorhab...   109  1.1e-05   1
UNIPROTKB|G4MUE8 - symbol:MGG_01656 "UV excision repair p...   109  1.6e-05   1


>FB|FBgn0026777 [details] [associations]
            symbol:Rad23 "Rad23" species:7227 "Drosophila melanogaster"
            [GO:0006289 "nucleotide-excision repair" evidence=ISS;NAS]
            [GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 GO:GO:0005634
            GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 EMBL:AE014135
            SUPFAM:SSF46934 GO:GO:0006289 KO:K10839 InterPro:IPR006636
            SMART:SM00727 HSSP:P54725 Gene3D:1.10.10.540 SUPFAM:SSF101238
            GeneTree:ENSGT00390000012078 TIGRFAMs:TIGR00601 OMA:NENEMES
            UniGene:Dm.1397 GeneID:43785 KEGG:dme:Dmel_CG1836 CTD:43785
            FlyBase:FBgn0026777 ChiTaRS:Rad23 GenomeRNAi:43785 NextBio:835805
            EMBL:AF132147 RefSeq:NP_651918.2 SMR:Q9V3W9 IntAct:Q9V3W9
            MINT:MINT-290357 STRING:Q9V3W9 EnsemblMetazoa:FBtr0089122
            EnsemblMetazoa:FBtr0333679 UCSC:CG1836-RA InParanoid:Q9V3W9
            Uniprot:Q9V3W9
        Length = 414

 Score = 164 (62.8 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query:    31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             AES LLMGDEY + V ++V+MGY R  V  A+ AS+NNP+RAVEYLI GI
Sbjct:   149 AESNLLMGDEYNQTVLSMVEMGYPREQVERAMAASYNNPERAVEYLINGI 198


>UNIPROTKB|K7ESE3 [details] [associations]
            symbol:RAD23A "UV excision repair protein RAD23 homolog A"
            species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 TIGRFAMs:TIGR00601 RefSeq:NP_001257292.1
            GeneID:5886 HGNC:HGNC:9812 EMBL:AC092069 Ensembl:ENST00000592268
            Uniprot:K7ESE3
        Length = 308

 Score = 160 (61.4 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>RGD|1309899 [details] [associations]
            symbol:Rad23a "RAD23 homolog A (S. cerevisiae)" species:10116
            "Rattus norvegicus" [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA;ISO] [GO:0006974
            "response to DNA damage stimulus" evidence=ISO] [GO:0031593
            "polyubiquitin binding" evidence=IEA;ISO] [GO:0032434 "regulation
            of proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA;ISO] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0045070 "positive
            regulation of viral genome replication" evidence=IEA;ISO]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 RGD:1309899 GO:GO:0005634
            GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
            GO:GO:0006289 eggNOG:COG5272 KO:K10839 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            GeneTree:ENSGT00390000012078 HOGENOM:HOG000172162
            TIGRFAMs:TIGR00601 CTD:5886 HOVERGEN:HBG055042 OrthoDB:EOG4M399F
            UniGene:Rn.105419 EMBL:BC084695 IPI:IPI00365167
            RefSeq:NP_001013208.1 SMR:Q5XFX7 STRING:Q5XFX7
            Ensembl:ENSRNOT00000004042 GeneID:361381 KEGG:rno:361381
            NextBio:676090 Genevestigator:Q5XFX7 Uniprot:Q5XFX7
        Length = 351

 Score = 160 (61.4 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>UNIPROTKB|A3KMV2 [details] [associations]
            symbol:RAD23A "UV excision repair protein RAD23 homolog A"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0045070 "positive regulation of viral genome replication"
            evidence=IEA] [GO:0032434 "regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0000502
            "proteasome complex" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003684
            "damaged DNA binding" evidence=IEA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 Prosite:PS00299 GO:GO:0005634
            GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 GO:GO:0000502 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 GO:GO:0045070
            GO:GO:0032434 KO:K10839 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 EMBL:BC133282
            IPI:IPI00714456 RefSeq:NP_001076083.1 UniGene:Bt.23124
            ProteinModelPortal:A3KMV2 SMR:A3KMV2 STRING:A3KMV2 PRIDE:A3KMV2
            Ensembl:ENSBTAT00000020113 GeneID:540564 KEGG:bta:540564 CTD:5886
            HOVERGEN:HBG055042 InParanoid:A3KMV2 OMA:TAREDKS OrthoDB:EOG4M399F
            NextBio:20878705 ArrayExpress:A3KMV2 Uniprot:A3KMV2
        Length = 362

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>UNIPROTKB|F1PTL1 [details] [associations]
            symbol:RAD23A "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0045070 "positive regulation of viral genome
            replication" evidence=IEA] [GO:0032434 "regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
            "damaged DNA binding" evidence=IEA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 GO:GO:0005634 GO:GO:0043161
            GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
            InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289
            GO:GO:0045070 GO:GO:0032434 KO:K10839 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            GeneTree:ENSGT00390000012078 TIGRFAMs:TIGR00601 CTD:5886
            OMA:TAREDKS EMBL:AAEX03012401 RefSeq:XP_542038.2
            ProteinModelPortal:F1PTL1 Ensembl:ENSCAFT00000027066 GeneID:484922
            KEGG:cfa:484922 Uniprot:F1PTL1
        Length = 362

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>ZFIN|ZDB-GENE-040808-59 [details] [associations]
            symbol:rad23aa "RAD23 homolog Aa (S. cerevisiae)"
            species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 ZFIN:ZDB-GENE-040808-59
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 KO:K10839
            InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
            HOVERGEN:HBG055042 OrthoDB:EOG4M399F EMBL:BC079526 IPI:IPI00483790
            RefSeq:NP_001003739.1 UniGene:Dr.79995 ProteinModelPortal:Q6AXI3
            SMR:Q6AXI3 STRING:Q6AXI3 PRIDE:Q6AXI3 GeneID:445284 KEGG:dre:445284
            CTD:445284 NextBio:20832031 ArrayExpress:Q6AXI3 Bgee:Q6AXI3
            Uniprot:Q6AXI3
        Length = 362

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 31/51 (60%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+ NI+ MGYER  V  AL+AS+NNP RAVEYL+ GI
Sbjct:   150 DASSTLVTGQEYDAMLTNIMSMGYERDKVVAALKASYNNPHRAVEYLLNGI 200


>UNIPROTKB|P54725 [details] [associations]
            symbol:RAD23A "UV excision repair protein RAD23 homolog A"
            species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032434 "regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IDA] [GO:0031593 "polyubiquitin binding" evidence=IDA]
            [GO:0045070 "positive regulation of viral genome replication"
            evidence=IMP] [GO:0006289 "nucleotide-excision repair"
            evidence=IDA] [GO:0003697 "single-stranded DNA binding"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 Prosite:PS00299
            GO:GO:0005634 GO:GO:0019048 GO:GO:0043161 GO:GO:0003684
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0003697
            GO:GO:0000502 GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 EMBL:AD000092
            GO:GO:0045070 GO:GO:0032434 KO:K10839 InterPro:IPR006636
            SMART:SM00727 PDB:1P9D PDBsum:1P9D Gene3D:1.10.10.540
            SUPFAM:SSF101238 TIGRFAMs:TIGR00601 CTD:5886 HOVERGEN:HBG055042
            OMA:TAREDKS OrthoDB:EOG4M399F EMBL:D21235 EMBL:AF549209
            EMBL:BC014026 IPI:IPI00008219 PIR:S44443 RefSeq:NP_001257291.1
            RefSeq:NP_001257292.1 RefSeq:NP_005044.1 UniGene:Hs.643267 PDB:1DV0
            PDB:1F4I PDB:1IFY PDB:1OQY PDB:1P98 PDB:1QZE PDB:1TP4 PDB:1ZO6
            PDB:2WYQ PDBsum:1DV0 PDBsum:1F4I PDBsum:1IFY PDBsum:1OQY
            PDBsum:1P98 PDBsum:1QZE PDBsum:1TP4 PDBsum:1ZO6 PDBsum:2WYQ
            DisProt:DP00156 ProteinModelPortal:P54725 SMR:P54725 IntAct:P54725
            MINT:MINT-105454 STRING:P54725 PhosphoSite:P54725 DMDM:1709983
            PaxDb:P54725 PeptideAtlas:P54725 PRIDE:P54725 DNASU:5886
            Ensembl:ENST00000316856 GeneID:5886 KEGG:hsa:5886 UCSC:uc002mvw.1
            GeneCards:GC19P013056 HGNC:HGNC:9812 MIM:600061 neXtProt:NX_P54725
            PharmGKB:PA34172 InParanoid:P54725 PhylomeDB:P54725 ChiTaRS:RAD23A
            EvolutionaryTrace:P54725 GenomeRNAi:5886 NextBio:22888
            PMAP-CutDB:P54725 ArrayExpress:P54725 Bgee:P54725 CleanEx:HS_RAD23A
            Genevestigator:P54725 GermOnline:ENSG00000179262 Uniprot:P54725
        Length = 363

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>MGI|MGI:105126 [details] [associations]
            symbol:Rad23a "RAD23a homolog (S. cerevisiae)" species:10090
            "Mus musculus" [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=ISO] [GO:0006974
            "response to DNA damage stimulus" evidence=IGI] [GO:0031593
            "polyubiquitin binding" evidence=ISO] [GO:0032434 "regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0045070 "positive regulation
            of viral genome replication" evidence=ISO] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 MGI:MGI:105126 Prosite:PS00299
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 GO:GO:0006974
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0000502
            EMBL:CH466525 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
            GO:GO:0006289 eggNOG:COG5272 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 HOVERGEN:HBG055042
            OMA:TAREDKS OrthoDB:EOG4M399F EMBL:X92410 EMBL:BC145372
            IPI:IPI00307988 UniGene:Mm.255539 ProteinModelPortal:P54726
            SMR:P54726 IntAct:P54726 STRING:P54726 PhosphoSite:P54726
            PaxDb:P54726 PRIDE:P54726 Ensembl:ENSMUST00000109761
            InParanoid:P54726 Bgee:P54726 CleanEx:MM_RAD23A
            Genevestigator:P54726 GermOnline:ENSMUSG00000003813 Uniprot:P54726
        Length = 363

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>UNIPROTKB|D4AD39 [details] [associations]
            symbol:Rad23a "RAD23a homolog (S. cerevisiae)"
            species:10116 "Rattus norvegicus" [GO:0003684 "damaged DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 RGD:1309899 GO:GO:0005634
            GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 EMBL:CH473972
            SUPFAM:SSF46934 GO:GO:0006289 GO:GO:0045070 GO:GO:0032434
            InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 TIGRFAMs:TIGR00601 OMA:TAREDKS IPI:IPI00561816
            UniGene:Rn.105419 Ensembl:ENSRNOT00000033495 Uniprot:D4AD39
        Length = 363

 Score = 160 (61.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 32/51 (62%), Positives = 38/51 (74%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   152 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 202


>UNIPROTKB|F1SD96 [details] [associations]
            symbol:RAD23A "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0045070 "positive regulation of viral genome
            replication" evidence=IEA] [GO:0032434 "regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
            "damaged DNA binding" evidence=IEA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 GO:GO:0005634 GO:GO:0043161
            GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
            InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289
            EMBL:CU463133 GO:GO:0045070 GO:GO:0032434 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            GeneTree:ENSGT00390000012078 TIGRFAMs:TIGR00601 OMA:TAREDKS
            Ensembl:ENSSSCT00000015021 Uniprot:F1SD96
        Length = 380

 Score = 159 (61.0 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 32/51 (62%), Positives = 37/51 (72%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A STL+ G EY  M+  I  MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:   169 DAASTLVTGSEYETMLTEITSMGYERERVVAALRASYNNPHRAVEYLLTGI 219


>ZFIN|ZDB-GENE-040426-1487 [details] [associations]
            symbol:rad23b "RAD23 homolog B (S. cerevisiae)"
            species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 ZFIN:ZDB-GENE-040426-1487
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 GO:GO:0006289 HSSP:Q862M4 eggNOG:COG5272 KO:K10839
            InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
            HOVERGEN:HBG055042 CTD:5887 EMBL:BC056578 IPI:IPI00482453
            RefSeq:NP_956858.1 UniGene:Dr.107756 ProteinModelPortal:Q6PHE9
            SMR:Q6PHE9 PRIDE:Q6PHE9 GeneID:393536 KEGG:dre:393536
            InParanoid:Q6PHE9 NextBio:20814557 ArrayExpress:Q6PHE9 Bgee:Q6PHE9
            Uniprot:Q6PHE9
        Length = 382

 Score = 159 (61.0 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 33/50 (66%), Positives = 36/50 (72%)

Query:    31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+TGI
Sbjct:   151 ATSALVTGQSYENMVTEIMLMGYERDRVVAALRASFNNPDRAVEYLLTGI 200


>ZFIN|ZDB-GENE-051113-160 [details] [associations]
            symbol:zgc:123349 "rad23ab" species:7955 "Danio
            rerio" [GO:0005634 "nucleus" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003684
            "damaged DNA binding" evidence=IEA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 ZFIN:ZDB-GENE-051113-160 GO:GO:0005634
            GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
            GO:GO:0006289 KO:K10839 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 TIGRFAMs:TIGR00601
            HOVERGEN:HBG055042 EMBL:BC108000 IPI:IPI00619183
            RefSeq:NP_001032776.1 UniGene:Dr.84850 ProteinModelPortal:Q32PS7
            SMR:Q32PS7 STRING:Q32PS7 PRIDE:Q32PS7 GeneID:562839 KEGG:dre:562839
            InParanoid:Q32PS7 NextBio:20884614 ArrayExpress:Q32PS7 Bgee:Q32PS7
            Uniprot:Q32PS7
        Length = 404

 Score = 157 (60.3 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 32/50 (64%), Positives = 36/50 (72%)

Query:    31 AESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             A S L+ G  Y  +V  I+ MGYER  V  ALRASFNNPDRAVEYL+TGI
Sbjct:   189 AASILVTGQAYENLVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLTGI 238


>UNIPROTKB|E2R4A5 [details] [associations]
            symbol:RAD23B "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071942 "XPC complex" evidence=IEA]
            [GO:0032434 "regulation of proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
            binding" evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000715
            "nucleotide-excision repair, DNA damage recognition" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0003684 "damaged DNA binding"
            evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            GO:GO:0005737 GO:GO:0043161 GO:GO:0003684 GO:GO:0007283
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
            PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0071942 GO:GO:0032434
            KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            TIGRFAMs:TIGR00601 CTD:5887 OMA:NDTIMAV EMBL:AAEX03008026
            EMBL:AAEX03008027 RefSeq:XP_538778.1 ProteinModelPortal:E2R4A5
            Ensembl:ENSCAFT00000004463 GeneID:481656 KEGG:cfa:481656
            Uniprot:E2R4A5
        Length = 406

 Score = 157 (60.3 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+ GI
Sbjct:   177 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGI 227


>UNIPROTKB|Q29RK4 [details] [associations]
            symbol:RAD23B "UV excision repair protein RAD23 homolog B"
            species:9913 "Bos taurus" [GO:0071942 "XPC complex" evidence=ISS]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032434 "regulation of
            proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0031593 "polyubiquitin binding" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0000715
            "nucleotide-excision repair, DNA damage recognition" evidence=IEA]
            [GO:0000502 "proteasome complex" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 Prosite:PS00299
            GO:GO:0005737 GO:GO:0043161 GO:GO:0003684 GO:GO:0007283
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0000502
            InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 eggNOG:COG5272
            GO:GO:0071942 GO:GO:0032434 KO:K10839 GO:GO:0000715
            InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 GeneTree:ENSGT00390000012078 HOGENOM:HOG000172162
            TIGRFAMs:TIGR00601 HOVERGEN:HBG055042 OrthoDB:EOG4M399F
            EMBL:BC114133 IPI:IPI00708797 RefSeq:NP_001039775.1
            UniGene:Bt.75268 ProteinModelPortal:Q29RK4 SMR:Q29RK4 STRING:Q29RK4
            PRIDE:Q29RK4 Ensembl:ENSBTAT00000002506 GeneID:530189
            KEGG:bta:530189 CTD:5887 InParanoid:Q29RK4 OMA:NDTIMAV
            NextBio:20875203 ArrayExpress:Q29RK4 Uniprot:Q29RK4
        Length = 408

 Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+ GI
Sbjct:   179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGI 229


>UNIPROTKB|F1SP32 [details] [associations]
            symbol:RAD23B "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071942 "XPC complex" evidence=IEA] [GO:0032434
            "regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0031593 "polyubiquitin binding"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000715
            "nucleotide-excision repair, DNA damage recognition" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0003684 "damaged DNA binding"
            evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            GO:GO:0005737 GO:GO:0043161 GO:GO:0003684 GO:GO:0007283
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
            PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0071942 GO:GO:0032434
            KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            TIGRFAMs:TIGR00601 CTD:5887 OMA:NDTIMAV EMBL:CU463059
            RefSeq:XP_001927901.1 ProteinModelPortal:F1SP32
            Ensembl:ENSSSCT00000005980 GeneID:100153668 KEGG:ssc:100153668
            Uniprot:F1SP32
        Length = 408

 Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+ GI
Sbjct:   179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGI 229


>UNIPROTKB|P54727 [details] [associations]
            symbol:RAD23B "UV excision repair protein RAD23 homolog B"
            species:9606 "Homo sapiens" [GO:0003684 "damaged DNA binding"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0000502 "proteasome complex"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0071942 "XPC
            complex" evidence=IDA] [GO:0006289 "nucleotide-excision repair"
            evidence=IDA;TAS] [GO:0000715 "nucleotide-excision repair, DNA
            damage recognition" evidence=IDA;TAS] [GO:0031593 "polyubiquitin
            binding" evidence=IDA] [GO:0032434 "regulation of proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IDA]
            [GO:0003697 "single-stranded DNA binding" evidence=TAS] [GO:0000718
            "nucleotide-excision repair, DNA damage removal" evidence=TAS]
            [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
            Reactome:REACT_216 InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            Prosite:PS00299 GO:GO:0005737 GO:GO:0005654 GO:GO:0043161
            GO:GO:0003684 GO:GO:0007283 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 EMBL:CH471105 GO:GO:0003697 GO:GO:0000502
            GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
            eggNOG:COG5272 GO:GO:0000718 GO:GO:0071942 GO:GO:0032434 KO:K10839
            GO:GO:0000715 InterPro:IPR006636 SMART:SM00727 PDB:1UEL PDBsum:1UEL
            Gene3D:1.10.10.540 SUPFAM:SSF101238 HOGENOM:HOG000172162
            TIGRFAMs:TIGR00601 HOVERGEN:HBG055042 OrthoDB:EOG4M399F CTD:5887
            OMA:NDTIMAV EMBL:D21090 EMBL:AY313777 EMBL:AY165178 EMBL:AK125226
            EMBL:AL137852 EMBL:BC020973 IPI:IPI00008223 PIR:S44346
            RefSeq:NP_002865.1 UniGene:Hs.521640 PDB:1P1A PDB:1PVE PDBsum:1P1A
            PDBsum:1PVE ProteinModelPortal:P54727 SMR:P54727 IntAct:P54727
            MINT:MINT-5006025 STRING:P54727 PhosphoSite:P54727 DMDM:1709985
            OGP:P54727 PaxDb:P54727 PeptideAtlas:P54727 PRIDE:P54727 DNASU:5887
            Ensembl:ENST00000358015 Ensembl:ENST00000416373 GeneID:5887
            KEGG:hsa:5887 UCSC:uc004bde.3 GeneCards:GC09P110045 HGNC:HGNC:9813
            HPA:CAB033868 HPA:HPA029718 HPA:HPA029720 MIM:600062
            neXtProt:NX_P54727 PharmGKB:PA34173 InParanoid:P54727
            PhylomeDB:P54727 ChiTaRS:RAD23B EvolutionaryTrace:P54727
            GenomeRNAi:5887 NextBio:22892 PMAP-CutDB:P54727 ArrayExpress:P54727
            Bgee:P54727 CleanEx:HS_RAD23B Genevestigator:P54727
            GermOnline:ENSG00000119318 Uniprot:P54727
        Length = 409

 Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+ GI
Sbjct:   179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGI 229


>POMBASE|SPBC2D10.12 [details] [associations]
            symbol:rhp23 "Rad23 homolog Rhp23" species:4896
            "Schizosaccharomyces pombe" [GO:0003684 "damaged DNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
            "nuclear envelope" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006289 "nucleotide-excision repair"
            evidence=IMP] [GO:0007346 "regulation of mitotic cell cycle"
            evidence=TAS] [GO:0016567 "protein ubiquitination" evidence=IMP]
            [GO:0030433 "ER-associated protein catabolic process" evidence=ISO]
            [GO:0031593 "polyubiquitin binding" evidence=TAS] [GO:0042177
            "negative regulation of protein catabolic process" evidence=IMP]
            [GO:0043130 "ubiquitin binding" evidence=IDA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 PomBase:SPBC2D10.12 GO:GO:0005829
            GO:GO:0007346 GO:GO:0005635 GO:GO:0003684 EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0016567 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 GO:GO:0030433 GO:GO:0042177
            GO:GO:0031593 InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934
            GO:GO:0006289 eggNOG:COG5272 KO:K10839 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            HOGENOM:HOG000172162 OrthoDB:EOG4MSH80 TIGRFAMs:TIGR00601
            EMBL:AF174293 PIR:T40115 RefSeq:NP_596231.1
            ProteinModelPortal:O74803 SMR:O74803 MINT:MINT-216365 STRING:O74803
            PRIDE:O74803 EnsemblFungi:SPBC2D10.12.1 GeneID:2540481
            KEGG:spo:SPBC2D10.12 OMA:YERSEVE NextBio:20801608 Uniprot:O74803
        Length = 368

 Score = 156 (60.0 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 30/48 (62%), Positives = 39/48 (81%)

Query:    33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +TL +G +    V+N+V+MGYERS V  A+RA+FNNPDRAVEYL+TGI
Sbjct:   139 NTLAVGAQRNVAVENMVEMGYERSEVERAMRAAFNNPDRAVEYLLTGI 186


>RGD|1562958 [details] [associations]
            symbol:Rad23b "RAD23 homolog B (S. cerevisiae)" species:10116
            "Rattus norvegicus" [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0000715 "nucleotide-excision repair, DNA damage recognition"
            evidence=IEA;ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
            evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
            evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
            evidence=ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
            [GO:0031593 "polyubiquitin binding" evidence=IEA;ISO] [GO:0032434
            "regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA;ISO] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0071942 "XPC complex" evidence=ISO;ISS] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            RGD:1562958 Prosite:PS00299 GO:GO:0005737 GO:GO:0043161
            GO:GO:0003684 GO:GO:0007283 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 GO:GO:0000502 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 eggNOG:COG5272 GO:GO:0071942 GO:GO:0032434
            KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 HOVERGEN:HBG055042
            OrthoDB:EOG4M399F CTD:5887 OMA:NDTIMAV EMBL:BC070960 EMBL:BC090351
            EMBL:BC098674 EMBL:BC111406 IPI:IPI00210495 RefSeq:NP_001020446.1
            UniGene:Rn.67042 HSSP:P54728 ProteinModelPortal:Q4KMA2 SMR:Q4KMA2
            IntAct:Q4KMA2 STRING:Q4KMA2 PhosphoSite:Q4KMA2 PRIDE:Q4KMA2
            Ensembl:ENSRNOT00000021629 GeneID:298012 KEGG:rno:298012
            UCSC:RGD:1562958 InParanoid:Q4KMA2 NextBio:642963
            Genevestigator:Q4KMA2 Uniprot:Q4KMA2
        Length = 415

 Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+ GI
Sbjct:   179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGI 229


>MGI|MGI:105128 [details] [associations]
            symbol:Rad23b "RAD23b homolog (S. cerevisiae)" species:10090
            "Mus musculus" [GO:0000502 "proteasome complex" evidence=IEA]
            [GO:0000715 "nucleotide-excision repair, DNA damage recognition"
            evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281
            "DNA repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
            evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
            [GO:0031593 "polyubiquitin binding" evidence=ISO] [GO:0032434
            "regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=ISO] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0071942 "XPC complex"
            evidence=ISO] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            MGI:MGI:105128 Prosite:PS00299 GO:GO:0005737 GO:GO:0043161
            GO:GO:0003684 GO:GO:0007283 GO:GO:0006974 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 GO:GO:0000502 InterPro:IPR019955
            PROSITE:PS50053 SUPFAM:SSF46934 eggNOG:COG5272 GO:GO:0071942
            GO:GO:0032434 KO:K10839 GO:GO:0000715 InterPro:IPR006636
            SMART:SM00727 PDB:2F4M PDB:2F4O PDBsum:2F4M PDBsum:2F4O
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 HOVERGEN:HBG055042
            OrthoDB:EOG4M399F CTD:5887 ChiTaRS:RAD23B EMBL:X92411 EMBL:AK150089
            EMBL:AK160880 EMBL:AK160890 EMBL:AK160973 EMBL:AL683890
            EMBL:BC027747 IPI:IPI00108774 RefSeq:NP_033037.2 UniGene:Mm.196846
            ProteinModelPortal:P54728 SMR:P54728 IntAct:P54728 STRING:P54728
            PhosphoSite:P54728 PaxDb:P54728 PRIDE:P54728
            Ensembl:ENSMUST00000030134 GeneID:19359 KEGG:mmu:19359
            InParanoid:Q3TUA4 OMA:EKGFIVC EvolutionaryTrace:P54728
            NextBio:296413 Bgee:P54728 CleanEx:MM_RAD23B Genevestigator:P54728
            GermOnline:ENSMUSG00000028426 Uniprot:P54728
        Length = 416

 Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 32/51 (62%), Positives = 36/51 (70%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDRAVEYL+ GI
Sbjct:   179 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGI 229


>UNIPROTKB|F1N9B7 [details] [associations]
            symbol:RAD23B "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003684 "damaged DNA binding" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0000715 "nucleotide-excision repair, DNA
            damage recognition" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
            [GO:0031593 "polyubiquitin binding" evidence=IEA] [GO:0032434
            "regulation of proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0071942 "XPC complex" evidence=IEA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 GO:GO:0005737 GO:GO:0043161
            GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
            InterPro:IPR019955 PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0071942
            GO:GO:0032434 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            TIGRFAMs:TIGR00601 EMBL:AADN02062165 EMBL:AADN02062166
            EMBL:AADN02062167 IPI:IPI00580312 Ensembl:ENSGALT00000025051
            OMA:GIPEQME Uniprot:F1N9B7
        Length = 381

 Score = 151 (58.2 bits), Expect = 3.9e-10, P = 3.9e-10
 Identities = 31/51 (60%), Positives = 35/51 (68%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             +A S L+ G  Y  MV  I+ MGYER  V  ALRASFNNPDR VEYL+ GI
Sbjct:   153 DAISALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRTVEYLLMGI 203


>TAIR|locus:2200522 [details] [associations]
            symbol:RAD23A "RADIATION SENSITIVE23A" species:3702
            "Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0006284 "base-excision repair" evidence=ISS] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0043161 "proteasomal
            ubiquitin-dependent protein catabolic process" evidence=IEA]
            [GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0070628
            "proteasome binding" evidence=IDA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 Prosite:PS00299 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0043161 GO:GO:0003684
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0070628
            EMBL:AC006341 InterPro:IPR019955 PROSITE:PS50053 EMBL:AC010924
            GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272
            KO:K10839 InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
            EMBL:AB109195 IPI:IPI00541487 IPI:IPI00651117 PIR:G86296 PIR:H86296
            RefSeq:NP_173070.1 UniGene:At.22124 ProteinModelPortal:Q84L32
            SMR:Q84L32 IntAct:Q84L32 PaxDb:Q84L32 PRIDE:Q84L32
            EnsemblPlants:AT1G16190.1 GeneID:838188 KEGG:ath:AT1G16190
            GeneFarm:4551 TAIR:At1g16190 InParanoid:Q84L32 OMA:HSADFED
            PhylomeDB:Q84L32 ProtClustDB:CLSN2682159 Genevestigator:Q84L32
            GermOnline:AT1G16190 Uniprot:Q84L32
        Length = 368

 Score = 138 (53.6 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 28/55 (50%), Positives = 40/55 (72%)

Query:    29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGI 80
             G A STL+ G    +MVQ I++MG   +++  VT ALRA++NNP+RAV+YL +GI
Sbjct:   134 GQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAYNNPERAVDYLYSGI 188


>SGD|S000000763 [details] [associations]
            symbol:RAD23 "Protein with ubiquitin-like N terminus"
            species:4932 "Saccharomyces cerevisiae" [GO:0003684 "damaged DNA
            binding" evidence=IEA;IDA] [GO:0006974 "response to DNA damage
            stimulus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000224
            "peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase
            activity" evidence=IDA] [GO:0006517 "protein deglycosylation"
            evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA;IMP] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0030674 "protein binding, bridging" evidence=IPI]
            [GO:0000502 "proteasome complex" evidence=IMP;IPI] [GO:0030433
            "ER-associated protein catabolic process" evidence=IMP] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0043130 "ubiquitin
            binding" evidence=IDA] [GO:0000111 "nucleotide-excision repair
            factor 2 complex" evidence=IDA] [GO:0000715 "nucleotide-excision
            repair, DNA damage recognition" evidence=TAS] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 SGD:S000000763 Prosite:PS00299
            GO:GO:0005739 GO:GO:0003684 EMBL:BK006939 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 GO:GO:0030433 GO:GO:0000502
            EMBL:U18779 InterPro:IPR019955 PROSITE:PS50053 EMBL:S65964
            EMBL:L22173 GO:GO:0043130 SUPFAM:SSF46934 GO:GO:0006517
            eggNOG:COG5272 RefSeq:NP_010877.3 GeneID:856674 KEGG:sce:YEL037C
            KO:K10839 GO:GO:0000715 InterPro:IPR006636 SMART:SM00727 KO:K03263
            RefSeq:NP_010880.3 GeneID:856677 KEGG:sce:YEL034W PDB:1X3W PDB:1X3Z
            PDB:3ESW PDBsum:1X3W PDBsum:1X3Z PDBsum:3ESW Gene3D:1.10.10.540
            SUPFAM:SSF101238 EMBL:L25428 EMBL:L22172 EMBL:S66117 EMBL:AY693018
            PIR:S50507 PDB:2QSF PDB:2QSG PDB:2QSH PDB:3M62 PDBsum:2QSF
            PDBsum:2QSG PDBsum:2QSH PDBsum:3M62 ProteinModelPortal:P32628
            SMR:P32628 DIP:DIP-1548N IntAct:P32628 MINT:MINT-404213
            STRING:P32628 PaxDb:P32628 PeptideAtlas:P32628 PRIDE:P32628
            EnsemblFungi:YEL037C CYGD:YEL037c GeneTree:ENSGT00390000012078
            HOGENOM:HOG000172162 OMA:MANPEVF OrthoDB:EOG4MSH80
            EvolutionaryTrace:P32628 NextBio:982693 Genevestigator:P32628
            GermOnline:YEL037C GO:GO:0000111 TIGRFAMs:TIGR00601 Uniprot:P32628
        Length = 398

 Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query:    36 LMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             ++G E    ++ I++MGY+R  V  ALRA+FNNPDRAVEYL+ GI
Sbjct:   143 VVGTERNETIERIMEMGYQREEVERALRAAFNNPDRAVEYLLMGI 187


>UNIPROTKB|B4DDJ7 [details] [associations]
            symbol:RAD23A "cDNA FLJ51789, highly similar to UV excision
            repair protein RAD23 homolog A" species:9606 "Homo sapiens"
            [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] InterPro:IPR000449
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 GO:GO:0005634
            GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940 SMART:SM00165
            PROSITE:PS50030 SUPFAM:SSF46934 GO:GO:0006289 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            TIGRFAMs:TIGR00601 HOVERGEN:HBG055042 UniGene:Hs.643267
            HGNC:HGNC:9812 ChiTaRS:RAD23A EMBL:AC092069 EMBL:AK293219
            IPI:IPI01011338 SMR:B4DDJ7 STRING:B4DDJ7 Ensembl:ENST00000541222
            Uniprot:B4DDJ7
        Length = 198

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query:    44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             M+  I+ MGYER  V  ALRAS+NNP RAVEYL+TGI
Sbjct:     1 MLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGI 37


>TAIR|locus:2177376 [details] [associations]
            symbol:RAD23D "RADIATION SENSITIVE23D" species:3702
            "Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0009409 "response to cold" evidence=IEP]
            [GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0070628
            "proteasome binding" evidence=IDA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0007067 "mitosis" evidence=RCA]
            InterPro:IPR000449 InterPro:IPR000626 InterPro:IPR004806
            InterPro:IPR009060 InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627
            Pfam:PF09280 PRINTS:PR01839 SMART:SM00213 Prosite:PS00299
            GO:GO:0005829 GO:GO:0005634 EMBL:AB005248 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0043161 GO:GO:0003684 GO:GO:0009409
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 GO:GO:0070628
            InterPro:IPR019955 PROSITE:PS50053 GO:GO:0043130 SUPFAM:SSF46934
            GO:GO:0006289 eggNOG:COG5272 KO:K10839 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            HOGENOM:HOG000172162 TIGRFAMs:TIGR00601 OMA:EKGFIVC EMBL:AB109198
            EMBL:AB109199 EMBL:AY037181 EMBL:AY058196 EMBL:AY081835
            EMBL:AY087564 IPI:IPI00539559 IPI:IPI00544733 RefSeq:NP_198663.1
            UniGene:At.25434 ProteinModelPortal:Q84L30 SMR:Q84L30 IntAct:Q84L30
            STRING:Q84L30 PaxDb:Q84L30 PRIDE:Q84L30 EnsemblPlants:AT5G38470.1
            GeneID:833835 KEGG:ath:AT5G38470 GeneFarm:4553 TAIR:At5g38470
            InParanoid:Q84L30 PhylomeDB:Q84L30 ProtClustDB:CLSN2916638
            Genevestigator:Q84L30 GermOnline:AT5G38470 Uniprot:Q84L30
        Length = 378

 Score = 131 (51.2 bits), Expect = 5.8e-08, P = 5.8e-08
 Identities = 29/55 (52%), Positives = 36/55 (65%)

Query:    29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGI 80
             G A S L+ G      VQ I+DMG   ++R  V  ALRA+FNNP+RAVEYL +GI
Sbjct:   136 GQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFNNPERAVEYLYSGI 190


>TAIR|locus:2076944 [details] [associations]
            symbol:RAD23C "RADIATION SENSITIVE23C" species:3702
            "Arabidopsis thaliana" [GO:0003684 "damaged DNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0043161
            "proteasomal ubiquitin-dependent protein catabolic process"
            evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IDA]
            [GO:0070628 "proteasome binding" evidence=IDA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 Prosite:PS00299 GO:GO:0005634
            EMBL:AC021640 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043161
            GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
            GO:GO:0070628 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0043130
            SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 KO:K10839
            InterPro:IPR006636 SMART:SM00727 Gene3D:1.10.10.540
            SUPFAM:SSF101238 HOGENOM:HOG000172162 TIGRFAMs:TIGR00601
            OMA:TAREDKS EMBL:AB109196 EMBL:AB109197 EMBL:AY039562 EMBL:AY113034
            IPI:IPI00547374 IPI:IPI00547984 RefSeq:NP_186903.1 UniGene:At.21477
            ProteinModelPortal:Q84L31 SMR:Q84L31 IntAct:Q84L31 PaxDb:Q84L31
            PRIDE:Q84L31 EnsemblPlants:AT3G02540.1 GeneID:821195
            KEGG:ath:AT3G02540 GeneFarm:4552 TAIR:At3g02540 InParanoid:Q84L31
            PhylomeDB:Q84L31 ProtClustDB:CLSN2915719 Genevestigator:Q84L31
            Uniprot:Q84L31
        Length = 419

 Score = 131 (51.2 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 29/55 (52%), Positives = 35/55 (63%)

Query:    29 GNAESTLLMGDEYGRMVQNIVDMG---YERSAVTEALRASFNNPDRAVEYLITGI 80
             G A S L  G      +Q I+DMG   ++R  V  ALRA+FNNP+RAVEYL TGI
Sbjct:   175 GQAASNLAAGSNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLYTGI 229


>ASPGD|ASPL0000045893 [details] [associations]
            symbol:AN2304 species:162425 "Emericella nidulans"
            [GO:0016567 "protein ubiquitination" evidence=IEA] [GO:0042177
            "negative regulation of protein catabolic process" evidence=IEA]
            [GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0005635
            "nuclear envelope" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
            [GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
            process" evidence=IEA] [GO:0003684 "damaged DNA binding"
            evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 EMBL:BN001307
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
            PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289 InterPro:IPR006636
            SMART:SM00727 Gene3D:1.10.10.540 SUPFAM:SSF101238
            TIGRFAMs:TIGR00601 OMA:EKGFIVC EnsemblFungi:CADANIAT00008997
            Uniprot:C8VN52
        Length = 369

 Score = 128 (50.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             N  S LL G +   ++  ++ MG+ER  +  A+RA+F NPDRA+EYL+ GI
Sbjct:   135 NDPSALLTGSQSEEVINQMMSMGFEREQINRAMRAAFFNPDRAIEYLLNGI 185


>GENEDB_PFALCIPARUM|PF10_0114 [details] [associations]
            symbol:PF10_0114 "DNA repair protein RAD23,
            putative" species:5833 "Plasmodium falciparum" [GO:0003684 "damaged
            DNA binding" evidence=ISS] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
            EMBL:AE014185 SUPFAM:SSF46934 GO:GO:0006289 KO:K10839 HSSP:P54725
            Gene3D:1.10.10.540 SUPFAM:SSF101238 HOGENOM:HOG000172162
            RefSeq:XP_001347399.1 ProteinModelPortal:Q8IJS8 IntAct:Q8IJS8
            MINT:MINT-1571420 EnsemblProtists:PF10_0114:mRNA GeneID:810272
            KEGG:pfa:PF10_0114 EuPathDB:PlasmoDB:PF3D7_1011700 OMA:NENEMES
            ProtClustDB:CLSZ2515023 Uniprot:Q8IJS8
        Length = 389

 Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
             NAES LL GD+    + NI  MG+E+  V +A+  ++NNP+RA++YL  G
Sbjct:   139 NAESMLLTGDKLKESIDNICAMGFEKEQVKKAMILAYNNPNRAIDYLTNG 188


>UNIPROTKB|Q8IJS8 [details] [associations]
            symbol:PF10_0114 "DNA repair protein RAD23, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003684 "damaged DNA
            binding" evidence=ISS] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 InterPro:IPR015940
            SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955 PROSITE:PS50053
            EMBL:AE014185 SUPFAM:SSF46934 GO:GO:0006289 KO:K10839 HSSP:P54725
            Gene3D:1.10.10.540 SUPFAM:SSF101238 HOGENOM:HOG000172162
            RefSeq:XP_001347399.1 ProteinModelPortal:Q8IJS8 IntAct:Q8IJS8
            MINT:MINT-1571420 EnsemblProtists:PF10_0114:mRNA GeneID:810272
            KEGG:pfa:PF10_0114 EuPathDB:PlasmoDB:PF3D7_1011700 OMA:NENEMES
            ProtClustDB:CLSZ2515023 Uniprot:Q8IJS8
        Length = 389

 Score = 124 (48.7 bits), Expect = 3.5e-07, P = 3.5e-07
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
             NAES LL GD+    + NI  MG+E+  V +A+  ++NNP+RA++YL  G
Sbjct:   139 NAESMLLTGDKLKESIDNICAMGFEKEQVKKAMILAYNNPNRAIDYLTNG 188


>DICTYBASE|DDB_G0286357 [details] [associations]
            symbol:rcbA "repC-binding protein A" species:44689
            "Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
            evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006974
            "response to DNA damage stimulus" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 dictyBase:DDB_G0286357 Prosite:PS00299
            GO:GO:0005634 GO:GO:0045335 GO:GO:0043161 GenomeReviews:CM000153_GR
            GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
            EMBL:AAFI02000085 InterPro:IPR019955 PROSITE:PS50053
            SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272 KO:K10839
            InterPro:IPR006636 SMART:SM00727 EMBL:AF103870 RefSeq:XP_637729.1
            HSSP:P54725 ProteinModelPortal:Q54LV1 SMR:Q54LV1 STRING:Q54LV1
            PRIDE:Q54LV1 EnsemblProtists:DDB0191177 GeneID:8625594
            KEGG:ddi:DDB_G0286357 OMA:MINEPLE Gene3D:1.10.10.540
            SUPFAM:SSF101238 Uniprot:Q54LV1
        Length = 342

 Score = 116 (45.9 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 22/47 (46%), Positives = 30/47 (63%)

Query:    33 STLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
             S    G E    ++NI DMG+ R  V  ALR +FNN +RA+EYL++G
Sbjct:   155 SDFATGTELEATIKNITDMGFARDQVLRALRLTFNNAERAIEYLVSG 201


>FB|FBgn0039147 [details] [associations]
            symbol:CG10694 species:7227 "Drosophila melanogaster"
            [GO:0006284 "base-excision repair" evidence=ISS] [GO:0003684
            "damaged DNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
            catabolic process" evidence=IEA] [GO:0006289 "nucleotide-excision
            repair" evidence=IEA] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            EMBL:AE014297 GO:GO:0005634 GO:GO:0043161 GO:GO:0003684
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
            PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272
            KO:K10839 HSSP:P54725 Gene3D:1.10.10.540 SUPFAM:SSF101238
            GeneTree:ENSGT00390000012078 EMBL:AY089339 RefSeq:NP_651212.1
            UniGene:Dm.5087 SMR:Q9VCD5 IntAct:Q9VCD5 MINT:MINT-325299
            STRING:Q9VCD5 EnsemblMetazoa:FBtr0084542 GeneID:42855
            KEGG:dme:Dmel_CG10694 UCSC:CG10694-RA FlyBase:FBgn0039147
            InParanoid:Q9VCD5 OMA:GRIMEDE OrthoDB:EOG4C5B1F GenomeRNAi:42855
            NextBio:830940 Uniprot:Q9VCD5
        Length = 290

 Score = 111 (44.1 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query:    45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             V +++ MGY    V  ALRASFN+P+RA+EYLI GI
Sbjct:   115 VSDLMSMGYGEEEVRSALRASFNHPERAIEYLINGI 150


>WB|WBGene00013924 [details] [associations]
            symbol:rad-23 species:6239 "Caenorhabditis elegans"
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
            "nucleotide-excision repair" evidence=IEA] [GO:0003684 "damaged DNA
            binding" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
            protein catabolic process" evidence=IEA] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000449 InterPro:IPR000626
            InterPro:IPR004806 InterPro:IPR009060 InterPro:IPR015360
            Pfam:PF00240 Pfam:PF00627 Pfam:PF09280 PRINTS:PR01839 SMART:SM00213
            GO:GO:0005634 GO:GO:0043161 GO:GO:0003684 GO:GO:0000003
            InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030 InterPro:IPR019955
            PROSITE:PS50053 SUPFAM:SSF46934 GO:GO:0006289 eggNOG:COG5272
            KO:K10839 InterPro:IPR006636 SMART:SM00727 EMBL:Z69904
            Gene3D:1.10.10.540 SUPFAM:SSF101238 GeneTree:ENSGT00390000012078
            HOGENOM:HOG000172162 RefSeq:NP_496488.2 ProteinModelPortal:Q23451
            SMR:Q23451 DIP:DIP-25917N IntAct:Q23451 MINT:MINT-226728
            STRING:Q23451 PaxDb:Q23451 EnsemblMetazoa:ZK20.3.1
            EnsemblMetazoa:ZK20.3.2 GeneID:174785 KEGG:cel:CELE_ZK20.3
            UCSC:ZK20.3 CTD:174785 WormBase:ZK20.3 InParanoid:Q23451
            OMA:YSGIPEA NextBio:885496 Uniprot:Q23451
        Length = 323

 Score = 109 (43.4 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query:    28 PGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             P  AE+   + DE    V  I  MGY+R     ALRA+F NPDRAVE+L+ G+
Sbjct:   119 PAEAEA---LTDEQEENVLAITGMGYDREQTIAALRAAFWNPDRAVEFLLNGL 168


>UNIPROTKB|G4MUE8 [details] [associations]
            symbol:MGG_01656 "UV excision repair protein Rad23"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
            "molecular_function" evidence=ND] InterPro:IPR000449
            InterPro:IPR000626 InterPro:IPR004806 InterPro:IPR009060
            InterPro:IPR015360 Pfam:PF00240 Pfam:PF00627 Pfam:PF09280
            PRINTS:PR01839 SMART:SM00213 GO:GO:0005634 GO:GO:0043161
            GO:GO:0003684 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
            InterPro:IPR019955 PROSITE:PS50053 EMBL:CM001232 SUPFAM:SSF46934
            GO:GO:0006289 KO:K10839 InterPro:IPR006636 SMART:SM00727
            Gene3D:1.10.10.540 SUPFAM:SSF101238 TIGRFAMs:TIGR00601
            RefSeq:XP_003714642.1 ProteinModelPortal:G4MUE8 SMR:G4MUE8
            EnsemblFungi:MGG_01656T0 GeneID:2679333 KEGG:mgr:MGG_01656
            Uniprot:G4MUE8
        Length = 401

 Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query:    30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGI 80
             N  + L  G      + N+  MG+ER+ +  A+RA++ NPDRAVEYL+ GI
Sbjct:   136 NDPNMLSTGAARDEAIANMEAMGFERTQIDAAMRAAYFNPDRAVEYLLNGI 186


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.132   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      129        89   0.00091  102 3  11 23  0.38    30
                                                     29  0.50    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  32
  No. of states in DFA:  432 (46 KB)
  Total size of DFA:  81 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.72u 0.11s 7.83t   Elapsed:  00:00:01
  Total cpu time:  7.72u 0.11s 7.83t   Elapsed:  00:00:01
  Start:  Thu Aug 15 11:01:25 2013   End:  Thu Aug 15 11:01:26 2013

the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with Rad23 Rad23 Rad23	protein from Drosophila melanogaster	1.8e-11
BLAST match view associations BLAST with Rad23a Rad23a Rad23a RAD23 homolog A (S. cerevisiae)	gene from Rattus norvegicus	3.3e-11
BLAST match view associations BLAST with RAD23A RAD23A RAD23A UV excision repair protein RAD23 homolog A	protein from Bos taurus	3.6e-11
BLAST match view associations BLAST with RAD23A RAD23A RAD23A Uncharacterized protein	protein from Canis lupus familiaris	3.6e-11
BLAST match view associations BLAST with rad23aa rad23aa rad23aa RAD23 homolog Aa (S. cerevisiae)	gene_product from Danio rerio	3.6e-11
BLAST match view associations BLAST with RAD23A RAD23A RAD23A UV excision repair protein RAD23 homolog A	protein from Homo sapiens	3.6e-11
BLAST match view associations BLAST with Rad23a Rad23a Rad23a RAD23a homolog (S. cerevisiae)	protein from Mus musculus	3.6e-11
BLAST match view associations BLAST with LOC100524483 LOC100524483 LOC100524483 Uncharacterized protein	protein from Sus scrofa	5.1e-11
BLAST match view associations BLAST with rad23b rad23b rad23b RAD23 homolog B (S. cerevisiae)	gene_product from Danio rerio	5.2e-11
BLAST match view associations BLAST with zgc:123349 zgc:123349 zgc:123349 rad23ab	gene_product from Danio rerio	9.7e-11
BLAST match view associations BLAST with RAD23B RAD23B RAD23B Uncharacterized protein	protein from Canis lupus familiaris	9.9e-11
BLAST match view associations BLAST with RAD23B RAD23B RAD23B UV excision repair protein RAD23 homolog B	protein from Bos taurus	1.0e-10
BLAST match view associations BLAST with RAD23B RAD23B RAD23B Uncharacterized protein	protein from Sus scrofa	1.0e-10
BLAST match view associations BLAST with RAD23B RAD23B RAD23B UV excision repair protein RAD23 homolog B	protein from Homo sapiens	1.0e-10
BLAST match view associations BLAST with Rad23b Rad23b Rad23b RAD23 homolog B (S. cerevisiae)	gene from Rattus norvegicus	1.0e-10
BLAST match view associations BLAST with Rad23b Rad23b Rad23b RAD23b homolog (S. cerevisiae)	protein from Mus musculus	1.0e-10
BLAST match view associations BLAST with RAD23B RAD23B RAD23B Uncharacterized protein	protein from Gallus gallus	3.9e-10
BLAST match view associations BLAST with RAD23A RAD23A RAD23A AT1G16190	protein from Arabidopsis thaliana	9.5e-09
BLAST match view associations BLAST with RAD23 RAD23 RAD23 Protein with ubiquitin-like N terminus	gene from Saccharomyces cerevisiae	1.4e-08
BLAST match view associations BLAST with RAD23A RAD23A RAD23A UV excision repair protein RAD23 homolog A	protein from Homo sapiens	2.0e-08
BLAST match view associations BLAST with RAD23D RAD23D RAD23D AT5G38470	protein from Arabidopsis thaliana	5.8e-08
BLAST match view associations BLAST with RAD23C RAD23C RAD23C RADIATION SENSITIVE23C	protein from Arabidopsis thaliana	7.0e-08
BLAST match view associations BLAST with PF10_0114 PF10_0114 PF10_0114 DNA repair protein RAD23, putative	gene from Plasmodium falciparum	3.5e-07
BLAST match view associations BLAST with PF10_0114 PF10_0114 PF10_0114 DNA repair protein RAD23, putative	protein from Plasmodium falciparum 3D7	3.5e-07
BLAST match view associations BLAST with rcbA rcbA rcbA repC-binding protein A	gene from Dictyostelium discoideum	2.1e-06
BLAST match view associations BLAST with CG10694 CG10694 CG10694	protein from Drosophila melanogaster	5.3e-06
BLAST match view associations BLAST with rad-23 rad-23 rad-23	gene from Caenorhabditis elegans	1.1e-05
BLAST match view associations BLAST with MGG_01656 MGG_01656 MGG_01656 UV excision repair protein Rad23	protein from Magnaporthe oryzae 70-15	1.6e-05