RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4260
(129 letters)
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin
associated domain, UBA domain, ubiquitin proteosome
pathway, DNA binding protein; NMR {Homo sapiens} SCOP:
a.5.2.1
Length = 49
Score = 79.0 bits (195), Expect = 3e-21
Identities = 31/49 (63%), Positives = 36/49 (73%)
Query: 34 TLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPA 82
TL+ G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+TGIP
Sbjct: 1 TLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPG 49
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 65.8 bits (159), Expect = 6e-14
Identities = 38/97 (39%), Positives = 55/97 (56%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
+A T++P + ++ ++ +A STL+ G EY M+ I+ MGYER V AL
Sbjct: 130 SEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAAL 189
Query: 63 RASFNNPDRAVEYLITGIPAAVVGEEAPVAANEPQGN 99
RAS+NNP RAVEYL+TGIP + E V ++
Sbjct: 190 RASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQ 226
Score = 28.0 bits (61), Expect = 0.85
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 1 MIGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTE 60
M+ P + S + GA N + + ++ + +G+ S V +
Sbjct: 288 MLNEPPGELADISDVEGEVGAIGEEAPQMNYIQ---VTPQEKEAIERLKALGFPESLVIQ 344
Query: 61 ALRASFNNPDRAVEYL 76
A A N + A +L
Sbjct: 345 AYFACEKNENLAANFL 360
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T,
ubiquitin specific protease 5, USP 5, UBA domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 43.5 bits (103), Expect = 3e-07
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
V IV MG+ R +ALRA+ N+ +RAV+++ +
Sbjct: 12 CVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR
{Homo sapiens}
Length = 126
Score = 42.6 bits (99), Expect = 3e-06
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
+V I MG++R+ +ALRA+ NN +RA++++ +
Sbjct: 74 DNQPPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFS 115
Score = 32.6 bits (73), Expect = 0.015
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIP 81
V + +MG+ A +A+ + N + A ++I +
Sbjct: 6 SVMQLAEMGFPLEACRKAVYFTGNMGAEVAFNWIIVHME 44
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal
sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE;
1.65A {Homo sapiens} PDB: 4ae4_B*
Length = 118
Score = 41.9 bits (98), Expect = 4e-06
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 40 EYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
E+ +++ +MG+E + E L N+ D A+E L+ A+
Sbjct: 75 EFLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMARAGAS 118
Score = 41.1 bits (96), Expect = 1e-05
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 37 MGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI-------TGIPAAVVGEEA 89
M + V+ +V+MGY V A++A+ N ++ ++YL G +V EEA
Sbjct: 4 MSPSERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFAHGQLCEKGFDPLLV-EEA 62
Query: 90 PVAANEPQGNNIKQFSSVKE 109
+ ++ + +
Sbjct: 63 LEMHQCSEEKMMEFLQLMSK 82
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated
domain, UBA domain, three helix bundle, structural
genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Length = 73
Score = 41.0 bits (96), Expect = 4e-06
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYL 76
V ++ G+ +AL+AS + ++A +++
Sbjct: 32 SVDTLLSFGFAEDVARKALKASGGDIEKATDWV 64
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 38.7 bits (89), Expect = 2e-04
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
++ PG+ + E V IV MG+ R +ALRA+ N+ +RAV+++
Sbjct: 703 LPGSSGPGSTSAAADPPPED--CVTTIVSMGFSRDQALKALRATNNSLERAVDWIF 756
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 35.6 bits (82), Expect = 6e-04
Identities = 9/34 (26%), Positives = 22/34 (64%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
++ + +MG+ + T+AL+ + + +A+E+LI
Sbjct: 32 ALRQLTEMGFPENRATKALQLNHMSVPQAMEWLI 65
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin
associated domain, compact three helix bundle,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 47
Score = 33.6 bits (76), Expect = 0.002
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
+Q ++DMG+ R EAL + + ++A EYL+T
Sbjct: 13 LQQLMDMGFTREHAMEALLNT-STMEQATEYLLT 45
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.5.2.1
Length = 73
Score = 33.7 bits (76), Expect = 0.002
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
G+ ++ S + + A + +E +Q +V MG++R+ V AL
Sbjct: 1 GSSGSSGSRQAPIANAAVLPQSQGRVAASEEQ----------IQKLVAMGFDRTQVEVAL 50
Query: 63 RASFNNPDRAVEYLIT 78
A+ ++ AVE L++
Sbjct: 51 AAADDDLTVAVEILMS 66
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein
1 (UBAP1), UBA domain, structural genomics; NMR {Homo
sapiens} SCOP: a.5.2.1
Length = 63
Score = 33.0 bits (74), Expect = 0.003
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 23 ATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
++ + G ++ + V+ +V+MGY V A++ N ++ ++YL
Sbjct: 1 GSSGSSGAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like
protein SB132; helical bundle, protein binding; NMR
{Streptococcus SP} PDB: 2den_A
Length = 108
Score = 32.8 bits (74), Expect = 0.010
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 2 IGAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMG-YERSAVTE 60
+ A A T+ G ++ +Q + DMG +
Sbjct: 27 VDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSQWQPQLQQLRDMGIQDDELSLR 86
Query: 61 ALRASFNNPDRAVEYLITG 79
AL+A+ + A+E + G
Sbjct: 87 ALQATGGDIQAALELIFAG 105
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 31.6 bits (72), Expect = 0.037
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
EY + ++N+ MG++R+AV AL + + + A E L++
Sbjct: 161 PEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 31.0 bits (70), Expect = 0.073
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 39 DEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
EY + ++N+ G++R+AV AL + + + A E L++
Sbjct: 213 PEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A
{Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Length = 46
Score = 28.8 bits (65), Expect = 0.074
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 41 YGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79
Y ++ + DMG+ + ALR S + A++ L+ G
Sbjct: 7 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 30.9 bits (70), Expect = 0.085
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
+++ I +MG+ AL + N A+ L+
Sbjct: 180 IIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain,
three helix bundle, ubiquitin associated domain,
structural genomics; NMR {Arabidopsis thaliana} SCOP:
a.5.2.1
Length = 84
Score = 29.0 bits (65), Expect = 0.13
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLI 77
+V +V MG+ + +A + N + A+ +L+
Sbjct: 32 IVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLL 66
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 30.2 bits (68), Expect = 0.14
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 9/66 (13%)
Query: 21 ATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALR---------ASFNNPDR 71
A+ T+ + ++ G+E+ + E LR N +R
Sbjct: 149 ASETSNGQKGNVEESDLYGIDHDLIDEFESQGFEKDKIVEVLRRLGVKSLDPNDNNTANR 208
Query: 72 AVEYLI 77
+E L+
Sbjct: 209 IIEELL 214
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex,
signaling protein; NMR {Saccharomyces cerevisiae} SCOP:
a.5.2.1
Length = 58
Score = 28.2 bits (63), Expect = 0.16
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 41 YGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79
Y ++ + DMG+ + ALR S + A++ L+ G
Sbjct: 17 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 56
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Mus musculus} SCOP:
a.5.2.1
Length = 64
Score = 28.6 bits (64), Expect = 0.17
Identities = 8/36 (22%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLIT 78
++++++MG+ R +AL + N + A+++L+
Sbjct: 12 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME 47
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain,
endocytosis/signaling protein complex; NMR
{Saccharomyces cerevisiae} SCOP: a.5.2.1
Length = 43
Score = 27.2 bits (60), Expect = 0.30
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
V+ + MG+ AL + + A +L+
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAATNFLL 40
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta
hairpin, transglutaminase fold, DNA-damage recognition,
DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae}
PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Length = 171
Score = 28.7 bits (63), Expect = 0.37
Identities = 14/74 (18%), Positives = 24/74 (32%)
Query: 3 GAPAAATSTPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEAL 62
GA +A A G + E + + + ++G+ER V +
Sbjct: 92 GADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVY 151
Query: 63 RASFNNPDRAVEYL 76
A N + A L
Sbjct: 152 FACDKNEEAAANIL 165
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Length = 64
Score = 27.5 bits (61), Expect = 0.42
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLIT 78
+++ ++ MG+ +AL A+ + A+ +L
Sbjct: 12 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 47
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus,
phosphoprotein, protein binding; NMR {Mus musculus}
Length = 53
Score = 27.0 bits (60), Expect = 0.43
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 41 YGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITGIPA 82
+ + ++ + MG+ R A +AL A+ + + A+E L+ +
Sbjct: 11 FQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGSQLS 53
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T,
ubiquitin specific protease 5 (USP 5), UBA domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 27.2 bits (60), Expect = 0.53
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLI 77
++ +V+MG+ A +A+ + N + A+ +++
Sbjct: 12 VIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVM 46
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus,
phosphoprotein, proteasome, signaling protein; NMR
{Homo sapiens} PDB: 2jy6_B
Length = 52
Score = 26.6 bits (59), Expect = 0.66
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 41 YGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79
+ + ++ + MG+ R A +AL A+ + + A+E L+
Sbjct: 12 FQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein;
HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Length = 47
Score = 25.9 bits (57), Expect = 1.1
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
G + ++ + +G+ S V +A A N + A +L++
Sbjct: 1 GSQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 41
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase;
NMR {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Length = 85
Score = 26.5 bits (59), Expect = 1.1
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 68 NPDRAVEYLITGIPAAVVGEE 88
+ ++A+EY + +PA +
Sbjct: 44 DREKAIEYGLMAVPAIAINGV 64
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin
associated domain, structural genomics; NMR {Mus
musculus} SCOP: a.5.2.1
Length = 74
Score = 26.4 bits (58), Expect = 1.1
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 14 TPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRA 72
+ S + ++ ++L Y + ++ + +G+ R A +AL A+ + A
Sbjct: 2 SSGSSGARACSQSSQTALPTSLFTEGRYQQELEELKALGFANRDANLQALVATDGDIHAA 61
Query: 73 VEYLITG 79
+E L+
Sbjct: 62 IEMLLGA 68
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: a.5.2.1
Length = 54
Score = 25.8 bits (57), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 41 YGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLITG 79
+ ++ + MG+ R A +AL A+ + D AVE L
Sbjct: 9 FQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQS 48
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 2.0
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 27/95 (28%)
Query: 22 TATATTPGNAESTLLMGDE----Y--GRMVQNIVDMGYERSAVTEALRASFNNPDRAVEY 75
A ++TL+ E Y R++ SA+ A+ A
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-----GNAQLV 157
Query: 76 LITGIPAAVVGEEAPVAANEPQGNNIKQFSSVKEI 110
I G G QGN F ++++
Sbjct: 158 AIFG------G----------QGNTDDYFEELRDL 176
Score = 26.2 bits (57), Expect = 3.9
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 49 VDMGYERSAVTEALRASFNNPDRAVEYLIT--GIPAAVVGEEAP----VAANEPQGNNIK 102
MG + ++A + + +RA + G + P + +G I+
Sbjct: 1629 QGMGMDLYKTSKAAQDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 103 Q 103
+
Sbjct: 1686 E 1686
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase,
glycosidase, disease mutat glycoprotein, hydrolase,
lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN
GUP; 1.70A {Homo sapiens} PDB: 1bhg_A*
Length = 613
Score = 26.6 bits (59), Expect = 2.8
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 3/67 (4%)
Query: 12 PSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDR 71
PS PV+ + A G ++ + Y + + + + + +
Sbjct: 455 PSRPVTFVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQK 514
Query: 72 AV---EY 75
+ EY
Sbjct: 515 PIIQSEY 521
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated
domain, UBA, compact three helix bundle, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Length = 64
Score = 24.5 bits (53), Expect = 4.1
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFNN-PDRAVEYLI 77
+ ++ MG+ R+ +AL ++ A ++L
Sbjct: 22 ALDVLLSMGFPRARAQKALASTGGRSVQTACDWLF 56
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 25.8 bits (57), Expect = 5.3
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVD----MGY-ERSAVTEA-LRASFNNPDRAVEY 75
T + L G +YG + +V+ M Y A +E A R +E+
Sbjct: 149 TIAVPAKTSDNIPWLRGYDYGGIGA-VVNYMFIMAYDWHHAGSEPGPVAPITEIRRTIEF 207
Query: 76 LITGIPA 82
I +P+
Sbjct: 208 TIAQVPS 214
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2
protein, proteasome, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.5.2.1
Length = 67
Score = 24.1 bits (52), Expect = 6.7
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 24 TATTPGNAESTLLMGDEYGRMVQNIVDMG-YERSAVTEALRASFNNPDRAVEYLITG 79
++ + G + S + + ++ + MG +A +AL A+ + + A+ L +
Sbjct: 2 SSGSSGPSHSLQAPEVRFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58
>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl
hydrolase, glycogen debraching; HET: GLC A16; 2.8A
{Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A
Length = 718
Score = 25.3 bits (56), Expect = 7.2
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 35 LLMGDEYGR 43
+L GDE R
Sbjct: 540 ILGGDELSR 548
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.124 0.338
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,858,664
Number of extensions: 105662
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 53
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.1 bits)