RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4260
(129 letters)
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human
(Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 61.9 bits (151), Expect = 5e-15
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 38 GDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
G EY M+ I+ MGYER V ALRAS+NNP RAVEYL+T
Sbjct: 1 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLT 41
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 50.2 bits (120), Expect = 4e-10
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAAVVGEEAPVAAN 94
+ +++I +MG+ + A +AL + NN + A+ L+T V ++
Sbjct: 11 KALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTSNKQKPVMGPPSGPSS 62
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 49.4 bits (118), Expect = 6e-10
Identities = 11/57 (19%), Positives = 25/57 (43%)
Query: 27 TPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+ G ++ + V+ +V+MGY V A++ N ++ ++YL +
Sbjct: 5 SSGAYSELQMLSPSERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFAHSGPS 61
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 49.8 bits (119), Expect = 6e-10
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 30 NAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLITGIPAA 83
+A + D V ++ G+ +AL+AS + ++A +++ +
Sbjct: 18 DAPISHQTSDIDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNNSGPS 71
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 73
Score = 44.5 bits (105), Expect = 7e-08
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 10 STPSTPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNP 69
S+ S+ QA A P + +Q +V MG++R+ V AL A+ ++
Sbjct: 2 SSGSSGSRQAPIANAAVLPQSQGRV----AASEEQIQKLVAMGFDRTQVEVALAAADDDL 57
Query: 70 DRAVEYLITG 79
AVE L++
Sbjct: 58 TVAVEILMSQ 67
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 64
Score = 37.1 bits (86), Expect = 3e-05
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLITGIPAAVVGEEAPVAAN 94
++++++MG+ R +AL + N + A+++L+ V E ++
Sbjct: 12 ALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLMEHEDDPDVDEPLSGPSS 63
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling
2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 34.3 bits (79), Expect = 3e-04
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLIT 78
+++ ++ MG+ +AL A+ + A+ +L
Sbjct: 5 LLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHD 40
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 32.8 bits (75), Expect = 0.001
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 45 VQNIVDMGYERSAVTEALRASFN-NPDRAVEYLIT 78
+ ++ MG+ R+ +AL ++ + A ++L +
Sbjct: 16 LDVLLSMGFPRARAQKALASTGGRSVQTACDWLFS 50
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 84
Score = 32.5 bits (74), Expect = 0.003
Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 44 MVQNIVDMGYERSAVTEALRASFN-NPDRAVEYLIT 78
+V +V MG+ + +A + N + A+ +L++
Sbjct: 32 IVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS 67
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 61
Score = 30.9 bits (70), Expect = 0.007
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 13 STPVSQAGATATATTPGNAESTLLMGDEYGRMVQNIVDMGYE-RSAVTEALRASFNNPDR 71
+ SQ+ TA T+ Y + ++ + +G+ R A +AL A+ +
Sbjct: 1 ARACSQSSQTALPTSLFTEGR-------YQQELEELKALGFANRDANLQALVATDGDIHA 53
Query: 72 AVEYLI 77
A+E L+
Sbjct: 54 AIEMLL 59
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 44
Score = 30.0 bits (68), Expect = 0.010
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 41 YGRMVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITG 79
Y ++ + DMG+ ALR S + A++ L+ G
Sbjct: 5 YEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 44
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 41
Score = 28.8 bits (65), Expect = 0.029
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 40 EYGRMVQNIVDMGY-ERSAVTEALRASFNNPDRAVEYLI 77
+ ++ + MG+ R A +AL A+ + D AVE L
Sbjct: 1 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLR 39
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 28.1 bits (63), Expect = 0.058
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 41 YGRMVQNIVDMGYE-RSAVTEALRASFNNPDRAVEYLITG 79
+ + ++ + MG+ +A +AL A+ + + A+ L +
Sbjct: 8 FSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 47
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C
{Saccharomyces cerevisiae [TaxId: 4932]}
Length = 43
Score = 25.6 bits (56), Expect = 0.38
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLITG 79
V+ + MG+ AL + + A +L+
Sbjct: 8 VEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 55
Score = 24.7 bits (54), Expect = 1.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 45 VQNIVDMGYERSAVTEALR 63
+ G+E+ + E LR
Sbjct: 13 IDEFESQGFEKDKIVEVLR 31
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 25.8 bits (55), Expect = 1.8
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGN 30
PA A+ P+TP + A P +
Sbjct: 5 LPAGASQVPTTPAGRPMPYAIRPMPED 31
>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase
{Thermotoga maritima [TaxId: 2336]}
Length = 376
Score = 25.4 bits (54), Expect = 2.5
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 51 MGYERSAVTEALRASFN--NPDRAVEYLITGIPAAV 84
MG +R A+R S N + V+Y + I +
Sbjct: 338 MGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEIL 373
>d2c1xa1 c.87.1.10 (A:7-456) UDP glucose:flavonoid
3-o-glucosyltransferase {Grape (Vitis vinifera) [TaxId:
29760]}
Length = 450
Score = 25.1 bits (53), Expect = 3.1
Identities = 6/56 (10%), Positives = 19/56 (33%)
Query: 22 TATATTPGNAESTLLMGDEYGRMVQNIVDMGYERSAVTEALRASFNNPDRAVEYLI 77
T + + +L ++ ++ +N+ + +S N V+ +
Sbjct: 390 VFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVS 445
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 24.7 bits (54), Expect = 3.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 4 APAAATSTPSTPVSQAGATATATTPGNA 31
+P A + +T + TA T +
Sbjct: 19 SPGGAQAPATTGAAGTAPTAPQPTAAPS 46
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human
(Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 23.1 bits (50), Expect = 3.2
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 45 VQNIVDMGYERSAVTEALRASFNNPDRAVEYLIT 78
++ + +G+ S V +A A N + A +L++
Sbjct: 8 IERLKALGFPESLVIQAYFACEKNENLAANFLLS 41
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 22.3 bits (47), Expect = 6.7
Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 43 RMVQNIVDMGYERSAVTEALRASFN-NPDRAVEYL 76
+M+Q +V+ G ++ AL+ + + + + A+EY+
Sbjct: 4 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYI 38
>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian
clock protein KaiA {Synechococcus elongatus [TaxId:
32046]}
Length = 135
Score = 23.6 bits (51), Expect = 7.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 80 IPAAVVGEEAPVAANEPQGN 99
+PA VVG+ +EP
Sbjct: 77 VPAIVVGDRDSEDPDEPAKE 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.124 0.338
Gapped
Lambda K H
0.267 0.0652 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 424,728
Number of extensions: 17140
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 26
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (22.4 bits)