BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4268
(86 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G K Y C +CD ++ SSL +H+ + P F C +C YA++ + L
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERP-FKCQICPYASRNSSQLTV 82
Query: 62 HYYRKHVGEDG 72
H R H G+ G
Sbjct: 83 H-LRSHTGDSG 92
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S+ S+L RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 80
Query: 62 H 62
H
Sbjct: 81 H 81
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG 72
++C+ C R ++ + LKRH + P +PC LC+ A R+ L H + H G G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S SL RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 80
Query: 62 H 62
H
Sbjct: 81 H 81
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 10 SGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+GEK Y CD C+R +S LKRH G P F C C R L +H R H
Sbjct: 32 TGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTH-TRTH 89
Query: 68 VGE 70
GE
Sbjct: 90 TGE 92
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHY 63
+G K + C +C R +S LK H G+ P F C C R L H+
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP-FSCRWPSCQKKFARSDELVRHH 116
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ + C C T+ R L+ HM G++P + C+ CS +K L SH + H G
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S + L RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 80
Query: 62 H 62
H
Sbjct: 81 H 81
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S + L RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 80
Query: 62 H 62
H
Sbjct: 81 H 81
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +GEK Y C C +++S++ L RH G+ P + C C + ++ +L +
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKP-YKCPECGKSFSQRANLRA 95
Query: 62 HYYRKHVGE 70
H R H GE
Sbjct: 96 H-QRTHTGE 103
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+GEK Y C C +++S R++L+ H G+ P + C C + + L +H R H G
Sbjct: 73 TGEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH-QRTHTG 130
Query: 70 E 70
E
Sbjct: 131 E 131
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+GEK Y C C +++S + L+ H G+ P + C C + R+ +L +H R H G
Sbjct: 101 TGEKPYACPECGKSFSQLAHLRAHQRTHTGEKP-YKCPECGKSFSREDNLHTH-QRTHTG 158
Query: 70 E 70
E
Sbjct: 159 E 159
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+GEK Y C C +++S +L H G+ P + C C + R+ +L H R H G
Sbjct: 129 TGEKPYKCPECGKSFSREDNLHTHQRTHTGEKP-YKCPECGKSFSRRDALNVH-QRTHTG 186
Query: 70 E 70
+
Sbjct: 187 K 187
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
GEK Y C C +++S L H G+ P + C C + K L H R H GE
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKP-YKCPECGKSFSDKKDLTRH-QRTHTGE 75
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S L RH+ G+ P F C +C R L +H R H G
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 58
Query: 70 E 70
E
Sbjct: 59 E 59
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 79
Query: 62 H 62
H
Sbjct: 80 H 80
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S L RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 80
Query: 62 H 62
H
Sbjct: 81 H 81
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 12 EKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C +SCDR +S L RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
L + +G+K + C C R +S L H+ G+ P F C +C R
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKR 80
Query: 62 H 62
H
Sbjct: 81 H 81
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+RY CD C +++S+ S L +H G+ P + C C A +++ L H +R H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKP-YKCDECGKAFIQRSHLIGH-HRVHTG 71
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPA 43
+GEK Y CD C + + RS L H G P+
Sbjct: 42 TGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 35.0 bits (79), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
G S+ + EK + CD+CD+++ RS+L H G+ P+ P +
Sbjct: 1 GSSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKPSGPSS 45
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + +S RSSL H GK P+ P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EKRY C+ C + +S S L +H G+ P+ P +
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 18 DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH 62
+SCDR +S L RH+ G+ P F C +C R L +H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH 68
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHMN-YECGKLPAFPCTL--CSYATKRKTSLASHYY 64
+GEK + CDS CD ++ ++++K+H N + K+ + C C A K+ L H +
Sbjct: 68 TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQF 127
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein
Bound To Dna
Length = 87
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
EK Y C C +++S S+L++H G+ P + C C + + + L H R H GE
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKP-YKCPECGKSFSQSSDLQKH-QRTHTGE 58
Score = 32.0 bits (71), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH 62
+GEK Y C C +++S S L++H G+ P + C C + R L+ H
Sbjct: 28 TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP-YKCPECGKSFSRSDHLSRH 79
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMN--YECGKLP-AFPCTLCSYATKRKTSLASH 62
+GEK Y C CD+T+ + L H ++ +P AF C+ C R+ ++A H
Sbjct: 11 TGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK + C CD +S SSL+ H N G+ P+ P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC 49
L + +G+K + C C R +S ++SL H+ G+ P F C +C
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP-FACDIC 68
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPA 43
S SGEK Y C C +++S R SL H G P+
Sbjct: 3 SGSSGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPS 39
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y+C+ C +++ +S L RH G+ P+ P +
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS 45
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
E+ Y+C C + +++RS+L +H G+ P+ P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C C + +S+R SL H GK P+ P +
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y CD C + +S+ +SL +H G+ P+ P +
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC 49
L + +G+K + C C R +S + L +H+ G+ P F C +C
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP-FACDIC 68
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRH 33
L + +GEK + CD C R ++ + RH
Sbjct: 50 LNQHIRTHTGEKPFACDICGRKFATLHTRDRH 81
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + +S S L RH G+ P+ P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide
Reveals An Extension To The Rules For Zinc-FingerDNA
RECOGNITION
Length = 66
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 8 APSGEKRYLCDSCDRTYSNRSSLKRH-MNYECGKLPAFPCTLCSYATKRKTSLASH 62
GE Y C C R Y++ S+ RH + + +PC C RK ++ +H
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
S SG+K +C+ C +T+ S L +H G+ P+ P
Sbjct: 3 SGSSGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKPSGP 41
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C +T+S +S L H G+ P+ P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
S SGEK Y C+ C + ++ +S L H G P+ P
Sbjct: 3 SGSSGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKPSGP 41
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
+K Y CD C ++ + +L H G+ P + C +C R +L +H R H GE
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH-TRIHSGE 71
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP 42
L + + +GEK Y C+ C ++ ++LK H G+ P
Sbjct: 33 LASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
S SGEK + C C +T+S S L H G+ P+ P +
Sbjct: 3 SGSSGEKLHECSECRKTFSFHSQLVIHQRIHTGENPSGPSS 43
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH-MNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
SGEK Y C C ++ ++K H + + F C C RK+ L H ++H
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 17 CDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
C C + + + L H+ G+ P + C C YA +KTSL H R H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKP-YKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + ++ S L RH G+ P+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
Y C C + + +S +K+H G+ P C +C A + ++L +H RKH G
Sbjct: 30 YPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH-SRKHTG 82
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + ++ S L RH G+ P+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPA 43
EK Y CD C + +S + SL H+ G P+
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPS 40
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH 62
EK Y C C + +S S L +H G+ P + C C A + + L +H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH 61
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
K Y C+ C + +S S L RH G+ P+ P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y+CD C + + + L RH G+ P+ P +
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPA--FPCTLCSYATKRKTSLASHYYRKH 67
SG C+ C T ++SL H + A FPC C ++ S+A+H + H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHMN 35
+GEK + CDS CD ++ ++++K+H N
Sbjct: 59 TGEKNFTCDSDGCDLRFTTKANMKKHFN 86
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y CD C + +S S L+ H G+ P+ P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 15 YLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGE 70
+ CD C +TY+ S LK H+ G+ P + C C + R L H YRKH G
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRH-YRKHTGH 64
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 44 FPCTLCSYATKRKTSLASHYYR 65
F C+LC YAT+ K++L +H R
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNR 31
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECG 39
S SGEK Y+C C + ++ +S L H G
Sbjct: 3 SGSSGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 15 YLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKHVGE 70
+ CD C +TY+ S LK H+ G+ P + C C + R L H YRKH G
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRH-YRKHTGH 63
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 1 MLGYYFSAPSGEKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRK 56
ML + +GEK + C + C ++YS +LK H+ G+ P + C CS A
Sbjct: 54 MLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNA 112
Query: 57 TSLASHYYRKHVGE 70
+ A H R H E
Sbjct: 113 SDRAKHQNRTHSNE 126
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 2 LGYYFSAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSL 59
L + + +GEK Y+C+ C + +SN S +H N + C L TKR T
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL-PGCTKRYTDP 143
Query: 60 ASHYYRKHV 68
+S RKHV
Sbjct: 144 SS--LRKHV 150
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C+ C + + RSSL H G+ P+ P +
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding
Protein In Complex With Methylated Cpg Site Dna
Length = 133
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC 49
G Y+C C R+Y +SL+RH N + +PC C
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWE-KKYPCRYC 56
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + ++ S L RH G P+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C C + +S++S L HM G+ P+ P +
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C C + +++RS+L H G+ P+ P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
S SG K Y C C + + ++S L HM G+ P+ P +
Sbjct: 3 SGSSGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C C + ++ +++L +H G+ P+ P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
+K + C+ C +T++ SSL H G+ P+ P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
K Y+C+ C + +S SSL H G+ P+ P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y+C C + ++ RS+L +H + P+ P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C+ C + + + S L RH G+ P+ P +
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
+K Y C+ C + ++ S L RH G+ P+ P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
S SGEK Y C+ C + +S++S L H G+ + P +
Sbjct: 3 SGSSGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSS 43
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C C ++++ +S L H G+ P+ P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double
Cys2His2 Zinc Finger From The Human Enhancer Binding
Protein Mbp-1
Length = 57
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH 62
+Y+C+ C S LK+H+ P + CT C+++ K K +L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKH 48
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + ++ S L H G+ P+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 9 PSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
P+ E+RY S D R ++++M + PC C +K SLA KH+
Sbjct: 397 PNVERRYRETSSDYI---REQMEKYMAEQ-------PCPTCQGYRLKKESLAVLVGGKHI 446
Query: 69 GEDGAL 74
GE A+
Sbjct: 447 GEVTAM 452
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK + CD C +++ RS L RH + P+ P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C+ C + + + S L+ H G+ P+ P +
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y CD C +++ SSL H G+ P+ P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C C + ++ ++ L +H G+ P+ P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 10 SGEKRYLCD--SCDRTYSNRSSLKRHMN 35
+GEK + C+ CDR ++N S K+HM+
Sbjct: 116 TGEKPFKCEFEGCDRRFANSSDRKKHMH 143
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYE 37
L + +GEK + CD C R ++ KRH + +
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
S SGEK + C C++ +S++S L H + P+ P
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
E+ Y C C + ++ +S+L H G+ P+ P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
S SGEK + C++C + +S +S L H G+
Sbjct: 3 SGSSGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
S SGEK Y+C C + ++ S L H G+
Sbjct: 3 SGSSGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C+ C + Y+++ +L H G+ P+ P +
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + ++ S L H G P+ P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain
Bound To The Adeno-Associated Virus P5 Initiator
Element
Length = 124
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL 48
G + ++C C + + S LKRH G+ P F CT
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKP-FQCTF 67
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 27 RSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+++L+ H C P F C CS+ TK+ ++L+ H + H
Sbjct: 22 KAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKHMKKFH 61
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPA 43
S SG++ Y C C +++ + SL H G P+
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPS 39
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
S SGEK Y C C T+S+ + L +H
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQ 30
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C C + +S + L +H G+ P+ P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
S SG+K Y+C+ C + + +S L H G+
Sbjct: 3 SGSSGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C C + + S L RH G+ P+ P +
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRH 33
S+ S K +LCD C + + ++ +LK H
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSH 28
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
E ++C C + ++++++L H G+ P+ P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
Length = 102
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 43 AFPCTLCSYATKRKTSLASHYYRKHVGEDG 72
++ C C++ TKR +L+ H + H GE+
Sbjct: 50 SYVCVECNFLTKRYDALSEHNLKYHPGEEN 79
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK + C+ C + ++ S L H G+ P+ P +
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK Y C C +++ +S L H G+ P+ P +
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS 45
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
EK + C+ C + ++ S L H G+ P+ P +
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C C + + + SS +H G+ P+ P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 25.8 bits (55), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGEDG 72
+ C+ C A RK L SH R H GE G
Sbjct: 11 YECSECGKAFNRKDQLISH-QRTHAGESG 38
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK + C C + ++ +S+L H G+ P+ P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
E+ Y C C + + +S+L H G+ P+ P +
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS 45
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFP 45
EK Y C+ C + + S+L H G+ P+ P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>pdb|4HF7|A Chain A, Crystal Structure Of A Gdsl-Like Lipase (Bt0569) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.77 A
Resolution
Length = 209
Score = 25.4 bits (54), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 40 KLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPPHEPDYIVP 85
K+ + + +YA K ++Y VGE+ AL P + D + P
Sbjct: 144 KIQSLNARIEAYAKANKIPFVNYYQPXVVGENKALNPQYTKDGVHP 189
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGK 40
K Y+C C R +++ +L+RH+ G+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
+ C CSYA+ K +L H RKH GE
Sbjct: 10 YKCPQCSYASAIKANLNVH-LRKHTGE 35
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 484
Length = 42
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
S SGEK Y+C C + + +S H G+
Sbjct: 3 SGSSGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH 62
E+ + C+ C +TY + S L RH G P C C + ++ + H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRH 51
>pdb|2YRM|A Chain A, Solution Structure Of The 1st Zf-C2h2 Domain From Human
B- Cell Lymphoma 6 Protein
Length = 43
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 15 YLCDSCDRTYSNRSSLKRH 33
+ C+ CD +S +SLKRH
Sbjct: 11 FFCNECDCRFSEEASLKRH 29
>pdb|2OZU|A Chain A, Crystal Structure Of Human Myst Histone
Acetyltransferase 3 In Complex With Acetylcoenzyme A
Length = 284
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECG 39
K YLC+ C + +R+ L++HM +CG
Sbjct: 40 KLYLCEFCLKYMKSRTILQQHMK-KCG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,052,912
Number of Sequences: 62578
Number of extensions: 103449
Number of successful extensions: 427
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 197
length of query: 86
length of database: 14,973,337
effective HSP length: 54
effective length of query: 32
effective length of database: 11,594,125
effective search space: 371012000
effective search space used: 371012000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)