RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4268
(86 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 51.6 bits (124), Expect = 1e-10
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM---NYECGKLPAFPCTLCSYATKRKTSLASHYYRK 66
SG C+ C T ++SL H L FPC C ++ S+A+H +
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKS 61
Query: 67 HVGEDGALPPPHEP 80
H L P E
Sbjct: 62 HPAL---LLAPQES 72
Score = 34.7 bits (80), Expect = 4e-04
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
+ R+ C+ C + + S+ H
Sbjct: 31 AETVAALRFPCEFCGKRFEKPDSVAAHR 58
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.2 bits (121), Expect = 2e-10
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
S C C + S++++L+ H C P F C CS+ TK+ ++L+ H +K G
Sbjct: 5 SSGHPEKCSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKH-MKKFHG 62
Query: 70 E 70
+
Sbjct: 63 D 63
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 46.0 bits (110), Expect = 2e-08
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECG-KLPAFPCTLCSYATKRKTSLASHYYRKHV 68
SGEK Y C C ++ ++K H+ + + F C C RK+ L H ++H
Sbjct: 11 SGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS 70
Query: 69 GE 70
Sbjct: 71 YS 72
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 46.3 bits (109), Expect = 2e-08
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYE---CGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
E Y C C + + H++ E ++ C C++ TKR +L+ H + H
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHP 75
Query: 69 GED 71
GE+
Sbjct: 76 GEE 78
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 42.9 bits (102), Expect = 3e-07
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH--YYRKHV 68
GEK + CD C R ++ KRH + + P + L + +K V
Sbjct: 28 GEKPFACDICGRKFARSDERKRHRDIQHIL-P-ILEDKVEELLSKNYHLENEVARLKKLV 85
Query: 69 GE 70
GE
Sbjct: 86 GE 87
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 43.3 bits (103), Expect = 5e-07
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
E+ + C C T+ R L+ HM G++P + C+ CS +K L SH + H G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMP-YKCSSCSQQFMQKKDLQSHMIKLHSGP 121
Score = 39.8 bits (94), Expect = 1e-05
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYEC---GKLPAFPCTLCSYATKRKTSLASHYYRKH 67
GEK + C C + Y + +L H C + F C++C +R+ L H H
Sbjct: 32 GEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLH-MVSH 89
Query: 68 VGE 70
GE
Sbjct: 90 TGE 92
Score = 36.7 bits (86), Expect = 1e-04
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH--YYRKH 67
SG C +C + + ++ LK H G+ P F C C RK +L H +
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKP-FECPKCGKCYFRKENLLEHEARNCMN 61
Query: 68 VGE 70
E
Sbjct: 62 RSE 64
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 41.4 bits (98), Expect = 8e-07
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM--NYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
GE Y C C R Y++ S+ RH +++ +PC C RK ++ +H H
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.5 bits (75), Expect = 0.002
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
K Y C C + ++ + ++ H+
Sbjct: 36 RNVKVYPCPFCFKEFTRKDNMTAHV 60
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 40.6 bits (96), Expect = 2e-06
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNY---ECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
GEK Y C CD+T+ + L H AF C+ C R+ ++A H
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNC 70
Query: 68 VGED 71
G D
Sbjct: 71 AGPD 74
Score = 28.3 bits (64), Expect = 0.13
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 9 PSGEKRYLCDSCDRTYSNRSSLKRHMN-------YEC 38
++C C +T++ R+++ RH + E
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEG 78
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 40.6 bits (96), Expect = 3e-06
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNY---ECGKLPAFPCTLCSYATKRKTSLASHYYRK 66
SGEK Y C C + + + H+ GK P + C C R L H +
Sbjct: 31 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK-P-YICQSCGKGFSRPDHLNGHIKQV 88
Query: 67 HVGE 70
H G
Sbjct: 89 HSGP 92
Score = 38.6 bits (91), Expect = 2e-05
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
SG C+ C + + + L RH G+ P + C +C KRK ++ H R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKP-YSCPVCGLRFKRKDRMSYH-VRSHDG 60
Query: 70 EDG 72
G
Sbjct: 61 SVG 63
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 39.8 bits (94), Expect = 5e-06
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
G+K + C C R +S L H+ G+ P F C +C R H + H+ +
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH-TKIHLRQ 88
Score = 37.1 bits (87), Expect = 6e-05
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 12 EKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
E+ Y C CDR +S SL RH+ G+ P F C +C R L +H R H G
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRTHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 39.3 bits (93), Expect = 7e-06
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+ C+ C + +S + LK HM G P + C C YA +SL H R H
Sbjct: 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH-LRIHSD 61
Query: 70 E 70
E
Sbjct: 62 E 62
Score = 33.9 bits (79), Expect = 0.001
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMN-------YECG 39
S E+ + C C N S L H+ G
Sbjct: 60 SDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSSG 96
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 38.8 bits (91), Expect = 1e-05
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 11 GEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+ Y C CD+ +S S LKRH G CS+ K T H H
Sbjct: 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 85
Score = 27.6 bits (62), Expect = 0.19
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 17 CDSCDRTYSNRSSLKRHMNYECGKLPAFPCT--LCSYATKRKTSLASHYYRKHVGE 70
++C + + + LK H +LP + C C + L H + H G
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLP-YECPHEGCDKRFSLPSRLKRH-EKVHAGY 59
Score = 24.9 bits (55), Expect = 2.1
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+G DSC + +H+
Sbjct: 57 AGYPCKKDDSCSFVGKTWTLYLKHV 81
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 38.2 bits (88), Expect = 1e-05
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
+Y+C+ C S LK+H+ P + CT C+++ K K +L H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKH-MKSKAHS 55
Score = 28.9 bits (64), Expect = 0.048
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECG 39
+ + Y C C+ ++ + +L +HM +
Sbjct: 25 TDVRPYHCTYCNFSFKTKGNLTKHMKSKAH 54
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 37.9 bits (89), Expect = 2e-05
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDG 72
+ ++C+ C R ++ + LKRH + P +PC LC+ A R+ L H + H G G
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKP-YPCGLCNRAFTRRDLLIRHAQKIHSGNLG 59
Score = 32.5 bits (75), Expect = 0.002
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM 34
EK Y C C+R ++ R L RH
Sbjct: 27 NEKPYPCGLCNRAFTRRDLLIRHA 50
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 39.2 bits (92), Expect = 2e-05
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP--------AFPCTLCSYATKRKTSLAS 61
+ SCDRT+S L H+ E P C + K K L +
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
Query: 62 HYYRKHVGE 70
H R H GE
Sbjct: 81 H-IRVHTGE 88
Score = 32.3 bits (74), Expect = 0.007
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 9/37 (24%)
Query: 11 GEKRYLCDS--CDRTYSNRSSLKRHMN-------YEC 38
GEK + C+ CDR ++N S K+HM+
Sbjct: 117 GEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPS 153
Score = 28.8 bits (65), Expect = 0.15
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYR 65
+GEK + C C + ++ +LK H G+ P F C C + H
Sbjct: 86 TGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKP-FKCEFEGCDRRFANSSDRKKH-MH 143
Query: 66 KHVGE 70
H +
Sbjct: 144 VHTSD 148
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 37.9 bits (89), Expect = 3e-05
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASHYYRKH 67
+ C +TY+ S LK H+ G+ P + C C + R L H YRKH
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRH-YRKH 60
Query: 68 VGE 70
G
Sbjct: 61 TGH 63
Score = 32.1 bits (74), Expect = 0.005
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+G + + C CDR +S L HM
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 30.2 bits (69), Expect = 0.027
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 10 SGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+GEK Y CD C ++ L RH G P F C C A R LA H ++H
Sbjct: 31 TGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRP-FQCQKCDRAFSRSDHLALH-MKRH 88
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 38.3 bits (90), Expect = 3e-05
Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 11 GEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
GEK Y CD C+R +S LKRH G P F C C R L +H R H
Sbjct: 33 GEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTH-TRTHT 90
Query: 69 GE 70
GE
Sbjct: 91 GE 92
Score = 35.2 bits (82), Expect = 4e-04
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 16/70 (22%)
Query: 10 SGEKRYLCD--SCDRTYSNRSSLKRHMN-------YECGKLPAFPCTLCSYATKRKTSLA 60
S ++ ++C C++ Y S L+ H Y+C C R L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKD------CERRFSRSDQLK 55
Query: 61 SHYYRKHVGE 70
H R+H G
Sbjct: 56 RH-QRRHTGV 64
Score = 34.4 bits (80), Expect = 0.001
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 12/42 (28%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM------------NYECGK 40
G K + C +C R +S LK H C K
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK 104
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 36.3 bits (85), Expect = 8e-05
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
+K Y CD C ++ + +L H G+ P + C +C R +L +H R H GE
Sbjct: 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKP-YRCNICGAQFNRPANLKTH-TRIHSGE 71
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 37.6 bits (88), Expect = 9e-05
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 20/72 (27%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMN-------------YECGKLPAFPCTLCSYATKRKTS 58
E D C + + ++ L H+N + G C+ K +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG------CSRELRPFKAQYM 54
Query: 59 LASHYYRKHVGE 70
L H R+H GE
Sbjct: 55 LVVH-MRRHTGE 65
Score = 34.9 bits (81), Expect = 8e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCT--LCSYATKRKTSLASHYYR 65
+GEK + C C ++YS +LK H+ G+ P + C CS A + A H R
Sbjct: 63 TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKP-YMCEHEGCSKAFSNASDRAKHQNR 121
Query: 66 KHVGE 70
H E
Sbjct: 122 THSNE 126
Score = 34.1 bits (79), Expect = 0.002
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 15/45 (33%)
Query: 11 GEKRYLC--DSCDRTYSNRSSLKRHMN-------------YECGK 40
GEK Y+C + C + +SN S +H N C K
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTK 138
Score = 33.0 bits (76), Expect = 0.004
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHM 34
S EK Y+C C + Y++ SSL++H+
Sbjct: 124 SNEKPYVCKLPGCTKRYTDPSSLRKHV 150
Score = 28.7 bits (65), Expect = 0.13
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 10 SGEKRYLCDSCD-----RTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASH 62
K ++C R + + L HM G+ P CT C + R +L +H
Sbjct: 30 GERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKP-HKCTFEGCRKSYSRLENLKTH 88
Query: 63 YYRKHVGE 70
R H GE
Sbjct: 89 -LRSHTGE 95
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 35.7 bits (81), Expect = 3e-04
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 4 YYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHY 63
Y A +++C C +S+ SLK+H+ Y C +C S H
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTEH---TKVCPVCKKEFTSTDSALDHV 120
Query: 64 YRKHVG 69
+KH
Sbjct: 121 CKKHNI 126
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 35.6 bits (83), Expect = 3e-04
Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 24/72 (33%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM------------NYECGKLPAFPCTLCSYATKRKTS 58
G + ++C C + + S LKRH CGK F +
Sbjct: 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGK--RF---------SLDFN 79
Query: 59 LASHYYRKHVGE 70
L +H R H G+
Sbjct: 80 LRTH-VRIHTGD 90
Score = 29.4 bits (67), Expect = 0.060
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 12 EKRYLCDS--CDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+ C C + + + S++++H++ G C C A + L H H G
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRV-HVCAECGKAFVESSKLKRH-QLVHTG 59
Query: 70 E 70
E
Sbjct: 60 E 60
Score = 27.1 bits (61), Expect = 0.44
Identities = 7/26 (26%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 11 GEKRYLCDS--CDRTYSNRSSLKRHM 34
G++ Y+C C++ ++ ++LK H+
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHI 114
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 34.4 bits (80), Expect = 4e-04
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
SGEK Y C C + +S S L +H G+ P + C C A + + L +H R H
Sbjct: 10 SGEKPYGCVECGKAFSRSSILVQHQRVHTGEKP-YKCLECGKAFSQNSGLINH-QRIHTS 67
Query: 70 E 70
Sbjct: 68 G 68
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 34.0 bits (79), Expect = 7e-04
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 22/70 (31%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------Y---ECGKLPAFPCTLCSYATKRKTSLA 60
+RY CD C +++S+ S L +H Y ECGK AF +++ L
Sbjct: 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGK--AF---------IQRSHLI 63
Query: 61 SHYYRKHVGE 70
H +R H G
Sbjct: 64 GH-HRVHTGS 72
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 34.3 bits (80), Expect = 7e-04
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
SG+K Y C C ++++++S RHM+ G P + C +C K K L H + H G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRP-YGCGVCGKKFKMKHHLVGH-MKIHTG 62
Query: 70 E 70
Sbjct: 63 I 63
Score = 30.1 bits (69), Expect = 0.027
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMN-------YEC 38
G + Y C C + + + L HM YEC
Sbjct: 33 LGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC 68
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 33.0 bits (76), Expect = 8e-04
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
GE YLC C ++++ R SL H
Sbjct: 7 GGETPYLCGQCGKSFTQRGSLAVHQ 31
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 34.1 bits (79), Expect = 8e-04
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+G K + C C+R++S L HM
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 33.0 bits (76), Expect = 0.002
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 7 SAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASH 62
+ + CD C + Y+ S LK H+ G+ P + CT C + R L H
Sbjct: 8 PDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKP-YKCTWEGCDWRFARSDELTRH 66
Query: 63 YYRKHVGE 70
YRKH G
Sbjct: 67 -YRKHTGA 73
Score = 33.0 bits (76), Expect = 0.002
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 10 SGEKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+GEK Y C + CD ++ L RH G P F C +C+ + R LA H ++H
Sbjct: 41 TGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALH-MKRH 98
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 34.7 bits (81), Expect = 0.001
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 22/70 (31%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------Y---ECGKLPAFPCTLCSYATKRKTSLA 60
GEK Y C C +++S +L H Y ECGK +F R+ +L
Sbjct: 130 GEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGK--SF---------SRRDALN 178
Query: 61 SHYYRKHVGE 70
H R H G+
Sbjct: 179 VH-QRTHTGK 187
Score = 34.7 bits (81), Expect = 0.001
Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 22/70 (31%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------Y---ECGKLPAFPCTLCSYATKRKTSLA 60
GEK Y C C +++S L H Y ECGK +F K L
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGK--SF---------SDKKDLT 66
Query: 61 SHYYRKHVGE 70
H R H GE
Sbjct: 67 RH-QRTHTGE 75
Score = 34.0 bits (79), Expect = 0.002
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
GEK Y C C +++S R++L+ H G+ P + C C + + L +H R H GE
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRTHTGEKP-YACPECGKSFSQLAHLRAH-QRTHTGE 131
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 33.9 bits (79), Expect = 0.001
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
E+ Y CD C + + + L+ H + P F C C + +LA H H+
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDHRYIHSKEKP-FKCQECGKGFCQSRTLAVH-KTLHMQT 99
Score = 33.2 bits (77), Expect = 0.002
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
+K ++C C R ++ +L H + P + C +C A +R+ L H H
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERTHTDERP-YTCDICHKAFRRQDHLRDH-RYIHSK 70
Query: 70 E 70
E
Sbjct: 71 E 71
Score = 28.6 bits (65), Expect = 0.12
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 7/36 (19%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMN-------YEC 38
S EK + C C + + +L H
Sbjct: 69 SKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 33.4 bits (77), Expect = 0.001
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 9 PSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRK 66
+ Y C SCDR +S L RH+ G+ P F C +C R L +H R
Sbjct: 14 VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH-IRT 71
Query: 67 H 67
H
Sbjct: 72 H 72
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 34.5 bits (80), Expect = 0.001
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 16/70 (22%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHMN-------YECGKLPAFPCTLCSYATKRKTSLA 60
KRY+C C Y+ L+ H+ + C + C L
Sbjct: 8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEG------CEKGFTSLHHLT 61
Query: 61 SHYYRKHVGE 70
H H GE
Sbjct: 62 RH-SLTHTGE 70
Score = 32.6 bits (75), Expect = 0.007
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 18/71 (25%)
Query: 11 GEKRYLCD--SCDRTYSNRSSLKRHMN---------YECGKLPAFPCTLCSYATKRKTSL 59
GEK + CD CD ++ ++++K+H N Y C C A K+ L
Sbjct: 69 GEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVC------HFENCGKAFKKHNQL 122
Query: 60 ASHYYRKHVGE 70
H H +
Sbjct: 123 KVH-QFSHTQQ 132
Score = 32.2 bits (74), Expect = 0.009
Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 11 GEKRYLC--DSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+ Y C + CD+ +S S LKRH G CS+ K T H H
Sbjct: 131 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC-KKDDSCSFVGKTWTLYLKHVAECH 188
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 33.1 bits (75), Expect = 0.001
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
G++ C C + RS+L R C K C + ++ +L G
Sbjct: 14 LGDRSQKCSKCGIIFIRRSTLSRRKTPMCEK--------CRKDSCQEAALNKD-EGNESG 64
Query: 70 E 70
+
Sbjct: 65 K 65
Score = 26.5 bits (58), Expect = 0.50
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
S S K +C+ C + ++L + E GK + P +
Sbjct: 32 STLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSS 72
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 32.5 bits (75), Expect = 0.001
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
GEK Y C+ C + + +LK H+
Sbjct: 7 GGEKPYPCEICGTRFRHLQTLKSHL 31
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 33.4 bits (76), Expect = 0.002
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM-----------NYECGKLPAFPCTLCSYATKRKTS 58
+ SCDRT+S L H+ N+ C C + K K
Sbjct: 21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW---EECPREGKSFKAKYK 77
Query: 59 LASHYYRKHVGE 70
L +H R H GE
Sbjct: 78 LVNH-IRVHTGE 88
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 32.8 bits (76), Expect = 0.002
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVG 69
S + Y C C + + +S +K+H G+ P C +C A + ++L +H RKH G
Sbjct: 25 SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKP-HKCQVCGKAFSQSSNLITH-SRKHTG 82
Score = 27.8 bits (63), Expect = 0.18
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 15 YLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
+ C C +++ S+L H+ P +PC C +K+ + H H GE
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRP-YPCQYCGKRFHQKSDMKKH-TFIHTGE 55
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 31.3 bits (72), Expect = 0.003
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
GEK Y C++C + + L+ H+
Sbjct: 7 GGEKPYKCETCGARFVQVAHLRAHV 31
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 31.4 bits (71), Expect = 0.003
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRH 33
G S+ +GE + C CDR ++ R+ L +H
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 32.1 bits (74), Expect = 0.004
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 10 SGEKRYLCDS--CDRTYSNRSSLKRHMNYE-CGKLPAFPCT--LCSYATKRKTSLASHYY 64
SG CD C R +SNR L H Y+ + F C C + K L H
Sbjct: 3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKS-FSCPEPACGKSFNFKKHLKEH-M 60
Query: 65 RKHVGE 70
+ H
Sbjct: 61 KLHSDT 66
Score = 31.4 bits (72), Expect = 0.007
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 11 GEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTLC 49
+K + C +C ++++ + LK HM + C
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRD-YICEFS 74
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.4 bits (71), Expect = 0.004
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCS 50
S+ K+ C+ C + + + L RH G+ P + S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSS 47
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 32.4 bits (73), Expect = 0.005
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 4/56 (7%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN----YECGKLPAFPCTLCSYATKRKTSLASH 62
G ++ C C Y L HMN Y ++ RK SL
Sbjct: 16 GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM 71
Score = 25.9 bits (56), Expect = 1.5
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
+K C C ++ + L HM
Sbjct: 73 GKEDAQKVLKCMYCGHSFESLQDLSVHM 100
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.007
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
+G Y C C++++S + L H
Sbjct: 8 AGVNPYKCSQCEKSFSGKLRLLVH 31
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.007
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
GEK + C CD +S SSL+ H
Sbjct: 8 MGEKTWKCRECDMCFSQASSLRLH 31
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 31.2 bits (71), Expect = 0.007
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 7 SAPSGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCTL--CSYATKRKTSLASH 62
S + ++C C +TY S LK H G+ P F C+ C R L+ H
Sbjct: 10 IDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRH 68
Query: 63 YYRKH 67
R H
Sbjct: 69 -RRTH 72
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 30.4 bits (69), Expect = 0.008
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+G K + C CDR++S L H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHR 31
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.5 bits (70), Expect = 0.009
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK + CD C +++ RS L RH
Sbjct: 9 GEKPFKCDICGKSFCGRSRLNRH 31
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.4 bits (69), Expect = 0.010
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK Y C C T+S+ + L +H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQH 29
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.011
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+GEK + C C +S SL +H+
Sbjct: 8 TGEKPFQCKECGMNFSWSCSLFKHL 32
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.012
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK Y+CD C + + + L RH
Sbjct: 8 SGEKPYVCDYCGKAFGLSAELVRH 31
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.012
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
S K + C C R ++ +S L +H
Sbjct: 8 SSTKSHQCHECGRGFTLKSHLNQH 31
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.013
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
+G+K + C+ C +T++ SSL H
Sbjct: 8 AGKKLFKCNECKKTFTQSSSLTVH 31
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.013
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y CD C +++ SSL H
Sbjct: 9 GEKPYKCDVCHKSFRYGSSLTVH 31
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 29.8 bits (68), Expect = 0.015
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECG 39
GEK Y C+ C + ++ +S+L H G
Sbjct: 9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 29.8 bits (68), Expect = 0.016
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
GEK Y CD C + +S + SL H+
Sbjct: 7 GGEKPYRCDQCGKAFSQKGSLIVHI 31
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.017
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + + + S L RH
Sbjct: 9 GEKPYKCNECGKVFRHNSYLSRH 31
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 29.8 bits (68), Expect = 0.017
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK + C C + +S RS+L H
Sbjct: 9 GEKPFKCVECGKGFSRRSALNVH 31
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 29.4 bits (67), Expect = 0.021
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRH 33
S SGEK + C C++ +S++S L H
Sbjct: 3 SGSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.022
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK Y CD C + +S+ +SL +H
Sbjct: 9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS 45
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.024
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y+C C + ++ RS+L +H
Sbjct: 9 GEKPYICAECGKAFTIRSNLIKH 31
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.025
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK Y C C + + S L RH
Sbjct: 9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 30.3 bits (67), Expect = 0.025
Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 10 SGEKRYLCDSCDR-TYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKHV 68
+C +C+ T LK+HM A C C K K L H +H
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH- 78
Query: 69 GEDGALPPPHEPD 81
A P E
Sbjct: 79 ---SAKPSDAEAS 88
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.026
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK + C C + +S+ L +H
Sbjct: 9 GEKPFDCIDCGKAFSDHIGLNQH 31
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 29.5 bits (67), Expect = 0.026
Identities = 9/42 (21%), Positives = 13/42 (30%), Gaps = 11/42 (26%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNY-----------ECGK 40
S K Y+C SC + +S L H+
Sbjct: 8 SVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.026
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK + C+ C + ++ S L H
Sbjct: 8 SGEKPFKCEECGKRFTQNSQLHSH 31
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.027
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y CD C + +S S L+ H
Sbjct: 9 GEKCYKCDVCGKEFSQSSHLQTH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.027
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK + C+ C + ++ S L H
Sbjct: 8 SGEKPFQCEECGKRFTQNSHLHSH 31
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.028
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + ++ S L RH
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARH 31
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.029
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK Y C C + Y R L H
Sbjct: 8 SGEKPYKCVECGKGYKRRLDLDFH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.029
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE+ Y+C C + +++RS+L +H
Sbjct: 9 GERPYICTVCGKAFTDRSNLIKH 31
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.030
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G K Y+C+ C + +S SSL H
Sbjct: 9 GVKPYMCNECGKAFSVYSSLTTH 31
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.1 bits (66), Expect = 0.031
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK Y C C + + + SS +H
Sbjct: 9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.034
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK Y C+ C + +S RSSL H
Sbjct: 9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS 45
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.034
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
S EK Y C+ C + Y+ R +L H
Sbjct: 8 SVEKPYKCEDCGKGYNRRLNLDMH 31
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.035
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK Y C+ C + ++ S L H
Sbjct: 8 SGEKPYKCNECGKVFTQNSHLTNH 31
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.035
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + ++ S L RH
Sbjct: 9 GEKPYKCNECGKVFTQNSHLVRH 31
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.035
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G+K Y C+ C + ++ S L RH
Sbjct: 9 GKKPYKCNECGKVFTQNSHLARH 31
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.0 bits (66), Expect = 0.036
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + +++RS+L H
Sbjct: 9 GEKPYRCAECGKAFTDRSNLFTH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.036
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + + + S L+ H
Sbjct: 9 GEKPYNCEECGKAFIHDSQLQEH 31
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.037
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK + CD C + + S+L+ H
Sbjct: 8 SGEKSHTCDECGKNFCYISALRIH 31
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.037
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + ++ +++L +H
Sbjct: 9 GEKPYRCGECGKAFAQKANLTQH 31
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 28.7 bits (65), Expect = 0.038
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRH 33
S SG++ Y C C +++ + SL H
Sbjct: 3 SGSSGQRVYECQECGKSFRQKGSLTLH 29
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.039
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + + S+L H
Sbjct: 9 GEKPYKCNECGKAFRAHSNLTTH 31
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.041
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y+C+ C +++ +S L RH
Sbjct: 9 GEKPYICNECGKSFIQKSHLNRH 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.042
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
SGE+ Y C+ C + + S L H+
Sbjct: 8 SGERPYGCNECGKNFGRHSHLIEHL 32
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.042
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + +S S L RH
Sbjct: 9 GEKPYKCNECGKAFSQTSKLARH 31
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.043
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + ++ S L RH
Sbjct: 9 GEKPYKCNECGKVFTQNSHLARH 31
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 28.7 bits (65), Expect = 0.043
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 8/36 (22%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN--------YEC 38
G+K Y C C + + +SL RH
Sbjct: 9 GKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.045
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK + C C + + L H
Sbjct: 8 SGEKPFKCKECGKAFRQNIHLASH 31
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.045
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + ++ S L H
Sbjct: 9 GEKPYKCNECGKVFTQNSHLANH 31
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.6 bits (65), Expect = 0.045
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + +S+R SL H
Sbjct: 9 GEKPYECSVCGKAFSHRQSLSVH 31
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.7 bits (65), Expect = 0.049
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 3 GYYFSAPSGEKRYLCDSCDRTYSNRSSLKRH 33
G S+ GEK Y C C +++S L +H
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.049
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
GEKR + ++ N L+ ++ +
Sbjct: 204 RGEKRLQREKSEQVLDNPEDLRGPIHLSVLR 234
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 28.7 bits (65), Expect = 0.049
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
GE+ + C C + + S+ +H
Sbjct: 8 HGERGHRCSDCGKFFLQASNFIQH 31
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 28.6 bits (65), Expect = 0.050
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + +S + L +H
Sbjct: 9 GEKPYECKECGKAFSQTTHLIQH 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 28.6 bits (65), Expect = 0.050
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECG 39
G K Y+C+ C + + ++S L H G
Sbjct: 9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.050
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGE+ + C+ C + + RS L H
Sbjct: 8 SGERPFKCNECGKGFGRRSHLAGH 31
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.052
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK Y C+ C + + RSSL H
Sbjct: 9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS 45
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.053
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + Y+++ +L H
Sbjct: 9 GEKPYKCEKCGKGYNSKFNLDMH 31
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.057
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C+ C + + R L H
Sbjct: 9 GEKPYKCEECGKGFICRRDLYTH 31
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.058
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE+ Y C C + + +S+L H
Sbjct: 9 GERHYECSECGKAFIQKSTLSMH 31
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.058
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YEC 38
GEK Y C+ C + + + L +H+
Sbjct: 9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.061
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C ++++ +S L+ H
Sbjct: 9 GEKPYKCSDCGKSFTWKSRLRIH 31
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.3 bits (64), Expect = 0.065
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK + C+ C + + S H
Sbjct: 8 SGEKPFKCEECGKGFYTNSQCYSH 31
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.2 bits (64), Expect = 0.066
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE ++C C + ++++++L H
Sbjct: 9 GENPFICSECGKVFTHKTNLIIH 31
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.066
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK Y C+ C +T+S +S L H
Sbjct: 8 SGEKPYGCNECGKTFSQKSILSAH 31
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 27.9 bits (63), Expect = 0.066
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
K Y C+ C + ++ L RH
Sbjct: 9 DSKSYNCNECGKAFTRIFHLTRH 31
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.067
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C +++S L +H
Sbjct: 9 GEKLYNCKECGKSFSRAPCLLKH 31
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 28.3 bits (64), Expect = 0.068
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK + C C ++Y+ R L +H
Sbjct: 9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSS 45
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 28.3 bits (64), Expect = 0.070
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEKRY C+ C + +S S L +H
Sbjct: 9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.071
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G K Y C+ C + +S S L RH
Sbjct: 9 GGKPYQCNECGKAFSQTSKLARH 31
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.072
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SG+K Y C C +T+ L +H
Sbjct: 8 SGKKPYECKECRKTFIQIGHLNQH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 27.9 bits (63), Expect = 0.077
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH-------MNYECG 39
SGE Y C C + ++ + L H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.078
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G K + C C + ++ +S+L H
Sbjct: 9 GGKHFECTECGKAFTRKSTLSMH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 27.9 bits (63), Expect = 0.080
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G+K + C C +++ + +L H
Sbjct: 9 GQKPFECTHCGKSFRAKGNLVTH 31
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 27.9 bits (63), Expect = 0.080
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
+GEK Y C C +++ S L +H
Sbjct: 8 TGEKPYNCKECGKSFRWASCLLKH 31
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.9 bits (63), Expect = 0.096
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G++ Y C C + + +SSL H
Sbjct: 9 GQRPYECIECGKAFKTKSSLICH 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.9 bits (63), Expect = 0.099
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C ++++ +S L H
Sbjct: 9 GEKPYECSICGKSFTKKSQLHVH 31
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.8 bits (63), Expect = 0.099
Identities = 9/38 (23%), Positives = 12/38 (31%), Gaps = 7/38 (18%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
SGEK Y C C + + + L H
Sbjct: 8 SGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.10
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK C C + + +S L H
Sbjct: 9 GEKPCKCTECGKAFCWKSQLIMH 31
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.11
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + + S L +H
Sbjct: 9 GEKPYKCQVCGKAFRVSSHLVQH 31
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.12
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + ++ ++ L +H
Sbjct: 9 GEKPYECKVCSKAFTQKAHLAQH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.12
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C + ++ +S L H
Sbjct: 9 GEKPYKCSDCGKAFTRKSGLHIH 31
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.5 bits (60), Expect = 0.12
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRH 33
S+ S K +LCD C + + ++ +LK H
Sbjct: 2 SSGSSGKTHLCDMCGKKFKSKGTLKSH 28
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 27.5 bits (62), Expect = 0.12
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK + C C +++S S L H
Sbjct: 9 GEKPFECAECGKSFSISSQLATH 31
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.5 bits (62), Expect = 0.13
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK Y C C +++ +S L H
Sbjct: 9 GEKPYECSDCGKSFIKKSQLHVH 31
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.4 bits (62), Expect = 0.14
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GEK + C C + ++ +S+L H
Sbjct: 9 GEKPFECSECQKAFNTKSNLIVH 31
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 27.1 bits (61), Expect = 0.15
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
SGEK Y C+ C + + +S L H
Sbjct: 8 SGEKPYECNECGKAFIWKSLLIVH 31
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.15
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN-------YECGK 40
GEK + C C +++S S L H
Sbjct: 9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 27.1 bits (61), Expect = 0.15
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
G K Y C C +T+S +S L H
Sbjct: 9 GVKPYGCSQCAKTFSLKSQLIVH 31
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.16
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRH 33
+GEK Y C C + +S++S L H
Sbjct: 8 AGEKPYGCSECGKAFSSKSYLIIH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.16
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE+ + C+ C +++ + L +H
Sbjct: 9 GERPHKCNECGKSFIQSAHLIQH 31
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 29.1 bits (64), Expect = 0.16
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
S Y C C + L H+
Sbjct: 173 PTASSGHGYQCHVCSAVLFSPLDLDAHV 200
Score = 24.0 bits (51), Expect = 9.0
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 39 GKLPAFPCTLCSYATKRKTSLASHYYRKHVGEDGALPPP 77
+ C +CS L +H + + L
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSS 214
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.18
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE+ Y C C + ++ +S+L H
Sbjct: 9 GERHYECSECGKAFARKSTLIMH 31
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 26.5 bits (59), Expect = 0.21
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 9 PSGEKRYLCD--SCDRTYSNRSSLKRHM 34
P +K+++C C + Y S L+ H+
Sbjct: 3 PGKKKQHICHIQGCGKVYGKTSHLRAHL 30
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.7 bits (60), Expect = 0.24
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE Y C C + +S + L H
Sbjct: 9 GENPYECCECGKVFSRKDQLVSH 31
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 0.28
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 9/64 (14%)
Query: 26 NRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH-----YYRKHVGEDG-ALPPPHE 79
S +++ +P+ K + A H +Y D L PP+
Sbjct: 413 KYSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 80 PDYI 83
Y
Sbjct: 470 DQYF 473
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.31
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE Y C C + +S + L H
Sbjct: 9 GENPYECHECGKAFSRKYQLISH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 26.5 bits (59), Expect = 0.34
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 10 SGEKRYLCD--SCDRTYSNRSSLKRHMNYECGKLPAFPCT 47
+GEK + C C +S L RH G P +
Sbjct: 8 TGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP-SGPS 46
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.9 bits (56), Expect = 0.44
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
+ C CSYA+ K +L H RKH GE
Sbjct: 10 YKCPQCSYASAIKANLNVH-LRKHTGE 35
Score = 22.5 bits (47), Expect = 8.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
S+ S K Y C C + +++L H+ G+
Sbjct: 2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE 35
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 26.6 bits (58), Expect = 0.46
Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 8/58 (13%)
Query: 18 DSCDRTYSNRSSLKRHMNYE------CGKLPAFPC--TLCSYATKRKTSLASHYYRKH 67
C + S+ L+RH+ + + C C + S+ +H +H
Sbjct: 7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH 64
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 25.7 bits (57), Expect = 0.47
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHM 34
+ ++C+ C R ++ + LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 26.0 bits (56), Expect = 0.55
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
S SG + C+ CD +S +SLKRH
Sbjct: 3 SGSSGNGAFFCNECDCRFSEEASLKRHT 30
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 25.6 bits (55), Expect = 0.69
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHM 34
S+ EK + C+ C++T+S L +H
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHE 32
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 26.6 bits (59), Expect = 1.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 64 YRKHVGEDGALPPPHEP 80
Y H D LP +P
Sbjct: 113 YPTHSDTDSPLPKMADP 129
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.8 bits (53), Expect = 1.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 44 FPCTLCSYATKRKTSLASHYYR 65
F C+LC YAT+ K++L +H R
Sbjct: 10 FKCSLCEYATRSKSNLKAHMNR 31
Score = 24.1 bits (51), Expect = 2.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMN 35
S+ S K + C C+ ++S+LK HMN
Sbjct: 2 SSGSSGKPFKCSLCEYATRSKSNLKAHMN 30
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 26.1 bits (57), Expect = 1.5
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 5 YFSAPSGE-----KRYLCDSCDRTYSNRSSLKRHMNYECGKLP 42
YFS E Y+ D + + ++ +R+ + P
Sbjct: 22 YFSPYPIELTDEDFIYIDDFTLQYFGSKKQYERYRKKCTLRHP 64
>1njq_A Superman protein; zinc-finger, peptide-zinc complex,
beta-BETA-ALFA motif, metal binding protein; NMR
{Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 24.3 bits (53), Expect = 2.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMN 35
+ Y C C R + + +L HMN
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMN 27
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 24.0 bits (52), Expect = 2.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 13 KRYLCDSCDRTYSNRSSLKRH 33
K Y C C+R ++ R L RH
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.4 bits (55), Expect = 2.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHM 34
G + C +C R + + ++LK H
Sbjct: 47 GGGLHRCLACARYFIDSTNLKTHF 70
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 25.6 bits (55), Expect = 2.6
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 9 PSGEKRYLCDSCDRTYSNRSSLKRHMN 35
S K C C R + S + H+
Sbjct: 287 RSEAKGIYCPFCSRWFKTSSVFESHLV 313
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.50A {Mycobacterium tuberculosis}
Length = 247
Score = 25.4 bits (55), Expect = 2.7
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 59 LASHYYRKHVGEDGALPPPHEPD 81
+ + +H+ D LP P
Sbjct: 186 VVAAAMVRHLLTDPMLPAELLPA 208
>3l09_A Putative transcriptional regulator; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
transcription regulator; 2.81A {Jannaschia SP}
Length = 266
Score = 25.0 bits (54), Expect = 3.5
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 59 LASHYYRKHVGEDGALPPPHEPD 81
L H +R+ +
Sbjct: 209 LVLHAWRRLILRSSPAAEAALGG 231
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.7 bits (50), Expect = 3.6
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
S+ S K + C+ C++ + + SL+ H+ +
Sbjct: 2 SSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 22.5 bits (47), Expect = 9.3
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 41 LPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
F C C+ K K SL +H R H E
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAH-LRIHTNE 35
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 24.5 bits (52), Expect = 3.7
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASH 62
S ++ Y C C+ S+ H A C CS H
Sbjct: 9 SPVENKEVYQCRLCNAKLSSLLEQGSHERLC---RNAAVCPYCSLRFFSPELKQEH 61
Score = 24.1 bits (51), Expect = 6.1
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+C C + + + H + K C C K S+ H H
Sbjct: 40 RNAAVCPYCSLRFFSPELKQEHESKCEYK--KLTCLECMRTFKSSFSIWRHQVEVH 93
>2eqn_A Hypothetical protein LOC92345; NAF1 domain, hypothetical protein
BC008207 [HOMO sapiens], structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 24.5 bits (53), Expect = 4.1
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 67 HVGEDGALPPPHEPDYIVPE 86
G G LP E I+PE
Sbjct: 2 SSGSSGELPSVEELTIILPE 21
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 23.2 bits (49), Expect = 4.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 15 YLCDSCDRTYSNRSSLKRH 33
Y C C+R++ +S+L RH
Sbjct: 2 YKCGLCERSFVEKSALSRH 20
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 23.6 bits (50), Expect = 4.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRH 33
+K Y CD C + Y NR L H
Sbjct: 5 DKPYACDICGKRYKNRPGLSYH 26
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 24.9 bits (55), Expect = 4.7
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 64 YRKHVGEDGAL 74
YRK++ +D AL
Sbjct: 303 YRKYIEKDAAL 313
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 23.2 bits (49), Expect = 5.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGK 40
K Y+C C R +++ +L+RH+ G+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGE 29
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 23.2 bits (49), Expect = 5.4
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
SG++ ++C C ++ +++ RH+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHL 27
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.2 bits (49), Expect = 5.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 15 YLCDSCDRTYSNRSSLKRHM 34
Y C C+R + N RHM
Sbjct: 10 YDCHICERKFKNELDRDRHM 29
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_m 1ysh_D 2zkr_z
Length = 92
Score = 23.6 bits (51), Expect = 6.7
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMNYECGK 40
+Y C+ C + R ++ +CGK
Sbjct: 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGK 62
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue;
Zn-binding domain, rossmann fold domain; HET: MYK NAD;
2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Length = 290
Score = 24.2 bits (53), Expect = 6.8
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 14 RYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLC 49
+C +C++ + + ++ +LP P C
Sbjct: 154 EAVCCTCNKIVKLNKIMLQKTSHFMHQLP--PECPC 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.444
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,346,487
Number of extensions: 60283
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 261
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)