RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4268
(86 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 37.0 bits (85), Expect = 1e-05
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLASHYYRKH 67
+K Y C C ++++++S RHM+ G + C +C K K L H + H
Sbjct: 1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGL-RPYGCGVCGKKFKMKHHLVGH-MKIH 53
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.0 bits (81), Expect = 5e-05
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
SGEK Y C C ++ ++K H+
Sbjct: 4 SGEKPYECYICHARFTQSGTMKMHI 28
Score = 26.5 bits (59), Expect = 0.084
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
+ C +C + ++ H +KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTEN 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 34.9 bits (81), Expect = 5e-05
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
SGEK Y C C + +S S L +H
Sbjct: 3 SGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 25.3 bits (56), Expect = 0.24
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
+ C C A R + L H R H GE
Sbjct: 8 YGCVECGKAFSRSSILVQH-QRVHTGE 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 33.5 bits (77), Expect = 2e-04
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+GEK Y C CD+T+ + L H
Sbjct: 4 TGEKPYACSHCDKTFRQKQLLDMHF 28
Score = 21.9 bits (47), Expect = 4.3
Identities = 5/28 (17%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGED 71
+ C+ C ++K L H ++++ +
Sbjct: 9 YACSHCDKTFRQKQLLDMH-FKRYHDPN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 32.0 bits (73), Expect = 6e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+G K + C CDR++S L H
Sbjct: 7 TGIKPFQCPDCDRSFSRSDHLALHR 31
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.9 bits (73), Expect = 9e-04
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
S K Y+C SC + +S L H+
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGHI 25
Score = 27.7 bits (62), Expect = 0.029
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
+ C C R L H + H E
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSE 32
>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein
1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 31.8 bits (72), Expect = 0.001
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 42 PAFPCTLCSYATKRKTSLASHYYRKHVGED 71
++ C C++ TKR +L+ H + H GE+
Sbjct: 5 SSYVCVECNFLTKRYDALSEHNLKYHPGEE 34
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 30.7 bits (70), Expect = 0.002
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHM 34
+K + C C R +S L H+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 21.8 bits (47), Expect = 5.3
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVG 69
F C +C R L +H R H G
Sbjct: 4 FQCRICMRNFSRSDHLTTH-IRTHTG 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 30.9 bits (70), Expect = 0.002
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
SG++ ++C C ++ +++ RH+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHL 27
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 30.5 bits (69), Expect = 0.003
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 SGEKRYLCDSCDRTYSNRSSLKRHM 34
+RY CD C +++S+ S L +H
Sbjct: 8 RERRRYKCDECGKSFSHSSDLSKHR 32
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 28.8 bits (65), Expect = 0.011
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHM 34
K++ C C + + L +H+
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
Score = 24.2 bits (53), Expect = 0.60
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
F C C R L+ H + H +
Sbjct: 3 FACPECPKRFMRSDHLSKH-IKTHQNK 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 28.0 bits (63), Expect = 0.020
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHM 34
+ ++C+ C R ++ + LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 24.9 bits (55), Expect = 0.35
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
F C +C+ A R+ L H YR H E
Sbjct: 3 FVCEVCTRAFARQEHLKRH-YRSHTNE 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 26.9 bits (60), Expect = 0.064
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 12 EKRYLCD--SCDRTYSNRSSLKRHM 34
++ Y CD CD+ + L RH
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK 25
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 26.2 bits (57), Expect = 0.12
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 13 KRYLCDS--CDRTYSNRSSLKRHMN 35
K + CDS CD ++ ++++K+H N
Sbjct: 1 KNFTCDSDGCDLRFTTKANMKKHFN 25
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.2 bits (55), Expect = 0.23
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHM 34
EK + CD C R ++ KRH
Sbjct: 1 EKPFACDICGRKFARSDERKRHT 23
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 25.3 bits (55), Expect = 0.24
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKH 67
F C CS+ TK+ ++L+ H + H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFH 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.0 bits (55), Expect = 0.30
Identities = 6/24 (25%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 13 KRYLCD--SCDRTYSNRSSLKRHM 34
+ Y+C C++ ++ ++LK H+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHI 24
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 24.6 bits (54), Expect = 0.39
Identities = 5/24 (20%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 13 KRYLCDS--CDRTYSNRSSLKRHM 34
+ ++C C + ++ L+RH
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 26.3 bits (58), Expect = 0.39
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 15 YLCDSCDRTYSNRSSLKRHMNYECGKLP 42
Y+ D + + ++ +R+ + P
Sbjct: 35 YIDDFTLQYFGSKKQYERYRKKCTLRHP 62
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 24.6 bits (54), Expect = 0.41
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 13 KRYLCD--SCDRTYSNRSSLKRHM 34
K + C C ++YS +LK H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHL 24
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 24.5 bits (54), Expect = 0.44
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHM 34
K Y C C + +S S L H
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 24.2 bits (53), Expect = 0.57
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 13 KRYLCD--SCDRTYSNRSSLKRHM 34
+ Y C SCDR +S + L RH+
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHI 24
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.0 bits (55), Expect = 0.63
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRHMN 35
G + C +C R + + ++LK H
Sbjct: 12 GGGLHRCLACARYFIDSTNLKTHFR 36
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.8 bits (51), Expect = 0.95
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
F C +C YA++ + L H R H G+
Sbjct: 4 FKCQICPYASRNSSQLTVH-LRSHTGD 29
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 25.2 bits (55), Expect = 1.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 15 YLCDSCDRTYSNRSSLKRHM 34
YLC+ C + +R+ L++HM
Sbjct: 32 YLCEFCLKYMKSRTILQQHM 51
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.2 bits (55), Expect = 1.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 15 YLCDSCDRTYSNRSSLKRHM 34
+LC+ C + S + H+
Sbjct: 32 WLCEYCLKYMKYEKSYRFHL 51
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 23.5 bits (50), Expect = 1.4
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 15 YLCDSCDRTYSNRSSLKRH 33
++C C +T++ R+++ RH
Sbjct: 5 FVCSKCGKTFTRRNTMARH 23
>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different
fingers {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 36
Score = 23.0 bits (49), Expect = 2.3
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 7 SAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLP 42
SA K+Y C +CD +++ + H + C P
Sbjct: 2 SAAEVMKKY-CSTCDISFNYVKTYLAHKQFYCKNKP 36
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 22.8 bits (48), Expect = 2.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 15 YLCDSCDRTYSNRSSLKRH 33
Y C C+R++ +S+L RH
Sbjct: 1 YKCGLCERSFVEKSALSRH 19
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor,
different fingers {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 36
Score = 22.7 bits (48), Expect = 2.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 14 RYLCDSCDRTYSNRSSLKRHMNYEC 38
R++C C +S+ S+L+ H Y C
Sbjct: 8 RFMCLPCGIAFSSPSTLEAHQAYYC 32
>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz
{Human (Homo sapiens) [TaxId: 9606]}
Length = 33
Score = 22.7 bits (49), Expect = 2.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHM 34
K YLC+ C + +R+ L++HM
Sbjct: 6 KLYLCEFCLKYMKSRTILQQHM 27
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.4 bits (47), Expect = 2.8
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 12 EKRYLCDSCDRTYSNRSSLKRHMNYECGK 40
E+ + C C T+ R L+ HM G+
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHTGE 30
Score = 22.4 bits (47), Expect = 3.2
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 44 FPCTLCSYATKRKTSLASHYYRKHVGE 70
F C++C +R+ L H H GE
Sbjct: 5 FTCSVCQETFRRRMELRLHMV-SHTGE 30
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 22.5 bits (48), Expect = 2.8
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 13 KRYLC--DSCDRTYSNRSSLKRHM 34
K Y+C C + Y++ SSL++H+
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHV 24
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 22.6 bits (48), Expect = 3.1
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 11 GEKRYLCDSCD--RTYSNRSSLKRHM 34
+K + C +T+ R +++ H+
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHI 40
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 22.3 bits (47), Expect = 3.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 18 DSCDRTYSNRSSLKRHMNYE 37
C R +SNR L H Y+
Sbjct: 6 PGCGRIFSNRQYLNHHKKYQ 25
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 22.3 bits (47), Expect = 3.2
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 17 CDSCDRTYSNRSSLKRHMNYECG 39
C+ C + +S + LK HM G
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCHTG 26
>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 37
Score = 22.3 bits (47), Expect = 4.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 11 GEKRYLCDSCDRTYSNRSSLKRH 33
GE Y C C R Y++ S+ RH
Sbjct: 5 GEHTYRCKVCSRVYTHISNFCRH 27
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays)
[TaxId: 4577]}
Length = 261
Score = 23.2 bits (49), Expect = 4.9
Identities = 11/68 (16%), Positives = 22/68 (32%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYATKRKTSLAS 61
LG S P + + S R ++ +++ + P C + + + S
Sbjct: 50 LGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRS 109
Query: 62 HYYRKHVG 69
K G
Sbjct: 110 LAKMKEAG 117
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 21.7 bits (46), Expect = 5.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 15 YLCDSCDRTYSNRSSLKRH 33
Y C C+R ++ R L RH
Sbjct: 2 YPCGLCNRAFTRRDLLIRH 20
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 21.6 bits (46), Expect = 5.4
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 13 KRYLCD--SCDRTYSNRSSLKRHM 34
K + C C + +S +L+ H+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHV 24
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 21.6 bits (46), Expect = 5.7
Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 7/36 (19%)
Query: 35 NYECGKLPAFPCTLCSYATKRKTSLASHYYRKHVGE 70
++ C P C + K L H + H
Sbjct: 1 SFSC------PEPACGKSFNFKKHLKEH-MKLHSDT 29
>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 22.0 bits (47), Expect = 6.3
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 14 RYLCDSCDR--TYSNRSSLKRHMN 35
++ CD CD T+ + S K H +
Sbjct: 3 KFYCDYCDTYLTHDSPSVRKTHCS 26
>d2nllb_ g.39.1.2 (B:) Thyroid hormone receptor (TR-beta)
DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 22.8 bits (48), Expect = 6.4
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 3 GYYFSAPS--GEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSY 51
GY++ + G K + + + S K K+ C C +
Sbjct: 13 GYHYRCITCEGCKGFFRRTIQKNLHPSYSCKYEGKCVIDKVTRNQCQECRF 63
>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus
thermophilus [TaxId: 274]}
Length = 271
Score = 22.8 bits (48), Expect = 7.1
Identities = 6/51 (11%), Positives = 15/51 (29%)
Query: 2 LGYYFSAPSGEKRYLCDSCDRTYSNRSSLKRHMNYECGKLPAFPCTLCSYA 52
+G +S P G+ + + + S++ + L
Sbjct: 48 IGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMT 98
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 21.2 bits (45), Expect = 8.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 13 KRYLCDSCDRTYSNRSSLKRHMN 35
+ Y C C R + + +L HMN
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMN 26
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 21.1 bits (44), Expect = 8.1
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 13 KRYLCDSCDRTYSNRSSLKRH 33
+ ++C C + + S LKRH
Sbjct: 1 RVHVCAECGKAFVESSKLKRH 21
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.444
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 346,743
Number of extensions: 13309
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 68
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)