BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4272
(575 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09080|HMB1_TRIGR Homeobox protein HB1 (Fragment) OS=Tripneustes gratilla PE=2 SV=3
Length = 307
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 280 ASDSLSSEKDIPSNLDLSQIPKPPPSSS-HTYSNQIHKNL-LQCNTGRFRQVYSSHQIVE 337
+ L S P+N SQ+ P S+S + + N+ L+ R RQ Y+ +Q +E
Sbjct: 144 GTGCLVSAAAEPNNNHCSQVMSPCKSTSGYPWMPVAGPNVGLEVGRKRCRQTYTRYQTLE 203
Query: 338 LEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
LEKEF YL RR LS LGLTERQIKIWFQNRRMK K+
Sbjct: 204 LEKEFHFNRYLTRRRRIELSHLLGLTERQIKIWFQNRRMKYKK 246
>sp|Q9PWD5|HXA9_MORSA Homeobox protein Hox-A9 OS=Morone saxatilis GN=hoxa9 PE=3 SV=1
Length = 269
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 266 LAHLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGR 325
+A V+KD G + +S E + LD S+ + P SN +H + T +
Sbjct: 154 VATASPVEKDTLSGQAGDVSGEAEEKPGLDPSKSLQNNP-----VSNWLHASA----TRK 204
Query: 326 FRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R Y+ HQI+ELEKEF YL DRR +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 205 KRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKFNKD 263
>sp|P13545|HMB1_STRPU Homeobox protein HB1 OS=Strongylocentrotus purpuratus PE=2 SV=2
Length = 308
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 280 ASDSLSSEKDIPSNLDLSQIPKPPPSSS-HTYSNQIHKNL-LQCNTGRFRQVYSSHQIVE 337
+ L S P+N SQ+ P S+S + + N+ L+ R RQ Y+ +Q +E
Sbjct: 145 GTGCLVSAAAEPNNNHCSQVMSPCKSTSGYPWMPVSGPNVGLEVGRKRCRQTYTRYQTLE 204
Query: 338 LEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
LEKEF YL RR LS LGLTERQIKIWFQNRRMK K+
Sbjct: 205 LEKEFHFNRYLTRRRRIELSHLLGLTERQIKIWFQNRRMKYKK 247
>sp|Q1KKZ3|HXA9B_TAKRU Homeobox protein Hox-A9b OS=Takifugu rubripes GN=hoxa9b PE=3 SV=1
Length = 249
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 311 SNQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKI 369
+N N L R ++ Y+ HQI+ELEKEF YLP DRR +++ L LTERQ+KI
Sbjct: 170 ANNPSSNWLHAKPTRKKRCPYTKHQILELEKEFLFNMYLPRDRRYEVARLLHLTERQVKI 229
Query: 370 WFQNRRMKLKRTHPD 384
WFQNRRMK+K+ + D
Sbjct: 230 WFQNRRMKMKKENKD 244
>sp|P51783|HXA9_CAVPO Homeobox protein Hox-A9 (Fragment) OS=Cavia porcellus GN=HOXA9 PE=2
SV=1
Length = 162
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
KPP ++ +N +H +T + R Y+ HQ +ELEKEF YL DRR +++ L
Sbjct: 78 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 133
Query: 361 GLTERQIKIWFQNRRMKLKRTHPD 384
LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 134 NLTERQVKIWFQNRRMKMKKINKD 157
>sp|P09631|HXA9_MOUSE Homeobox protein Hox-A9 OS=Mus musculus GN=Hoxa9 PE=1 SV=2
Length = 271
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
KPP ++ +N +H +T + R Y+ HQ +ELEKEF YL DRR +++ L
Sbjct: 187 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 242
Query: 361 GLTERQIKIWFQNRRMKLKRTHPD 384
LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 243 NLTERQVKIWFQNRRMKMKKINKD 266
>sp|O42506|HXA9A_TAKRU Homeobox protein Hox-A9a OS=Takifugu rubripes GN=hoxa9a PE=3 SV=1
Length = 283
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 309 TYS----NQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTE 364
TYS N + L T + R Y+ HQI+ELEKEF YL DRR +++ L LTE
Sbjct: 198 TYSGDRDNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLLNLTE 257
Query: 365 RQIKIWFQNRRMKLKRTHPD 384
RQ+KIWFQNRRMK+K+ + D
Sbjct: 258 RQVKIWFQNRRMKMKKFNKD 277
>sp|P31269|HXA9_HUMAN Homeobox protein Hox-A9 OS=Homo sapiens GN=HOXA9 PE=1 SV=4
Length = 272
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 4/84 (4%)
Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
KPP ++ +N +H +T + R Y+ HQ +ELEKEF YL DRR +++ L
Sbjct: 188 KPPIDPNNPAANWLHAR----STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL 243
Query: 361 GLTERQIKIWFQNRRMKLKRTHPD 384
LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 244 NLTERQVKIWFQNRRMKMKKINKD 267
>sp|Q9PWL6|HXA9A_DANRE Homeobox protein Hox-A9a OS=Danio rerio GN=hoxa9a PE=2 SV=2
Length = 250
Score = 75.9 bits (185), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
KP + SN +H + +T + R Y+ HQI+ELEKEF YL DRR +++ L
Sbjct: 166 KPGADPENPVSNWLHAS----STRKKRCPYTKHQILELEKEFLFNTYLTRDRRYEVARLL 221
Query: 361 GLTERQIKIWFQNRRMKLKR 380
LTERQ+KIWFQNRRMK+K+
Sbjct: 222 NLTERQVKIWFQNRRMKMKK 241
>sp|Q1KKT0|HXDAA_TAKRU Homeobox protein Hox-D10a OS=Takifugu rubripes GN=hoxd10a PE=3 SV=1
Length = 336
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 311 SNQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKI 369
S+Q N L +GR ++ Y+ HQ +ELEKEF YL +RR +S+ + LT+RQ+KI
Sbjct: 249 SDQPANNWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVNLTDRQVKI 308
Query: 370 WFQNRRMKLKR 380
WFQNRRMKLK+
Sbjct: 309 WFQNRRMKLKK 319
>sp|Q8AWZ0|HXB8A_DANRE Homeobox protein Hox-B8a OS=Danio rerio GN=hoxb8a PE=2 SV=1
Length = 245
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/92 (47%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH-- 382
R RQ YS +Q +ELEKEF YL RR +S LGLTERQ+KIWFQNRRMK K+ +
Sbjct: 147 RGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK 206
Query: 383 ---PDMVVEYVKESSEARSASQKTNHQSAPAD 411
P E + E R Q + QSA D
Sbjct: 207 DKFPSSKSEQEQIEKEKREKEQASGTQSAGED 238
>sp|P02830|HXA7_MOUSE Homeobox protein Hox-A7 OS=Mus musculus GN=Hoxa7 PE=2 SV=2
Length = 229
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 41/60 (68%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R RQ Y+ +Q +ELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+ H D
Sbjct: 131 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKD 190
>sp|O43365|HXA3_HUMAN Homeobox protein Hox-A3 OS=Homo sapiens GN=HOXA3 PE=2 SV=1
Length = 443
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
Q ++ R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247
Query: 380 R 380
+
Sbjct: 248 K 248
>sp|A2T7F3|HXA7_PANTR Homeobox protein Hox-A7 OS=Pan troglodytes GN=HOXA7 PE=3 SV=1
Length = 230
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 41/60 (68%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R RQ Y+ +Q +ELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+ H D
Sbjct: 132 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKD 191
>sp|P31268|HXA7_HUMAN Homeobox protein Hox-A7 OS=Homo sapiens GN=HOXA7 PE=2 SV=3
Length = 230
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 41/60 (68%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R RQ Y+ +Q +ELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+ H D
Sbjct: 132 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKD 191
>sp|Q08DG7|HXA3_BOVIN Homeobox protein Hox-A3 OS=Bos taurus GN=HOXA3 PE=2 SV=1
Length = 442
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
Q ++ R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K
Sbjct: 188 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 247
Query: 380 R 380
+
Sbjct: 248 K 248
>sp|P02831|HXA3_MOUSE Homeobox protein Hox-A3 OS=Mus musculus GN=Hoxa3 PE=1 SV=2
Length = 443
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
Q ++ R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K
Sbjct: 189 QASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 248
Query: 380 R 380
+
Sbjct: 249 K 249
>sp|Q9NYD6|HXC10_HUMAN Homeobox protein Hox-C10 OS=Homo sapiens GN=HOXC10 PE=1 SV=2
Length = 342
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
Query: 376 MKLKRTH 382
MKLK+ +
Sbjct: 321 MKLKKMN 327
>sp|P09016|HXD4_HUMAN Homeobox protein Hox-D4 OS=Homo sapiens GN=HOXD4 PE=2 SV=3
Length = 255
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 283 SLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCN-TG----RFRQVYSSHQIVE 337
S S K PS L Q P+ + + ++H N + N TG R R Y+ Q++E
Sbjct: 114 SQSDPKQPPSGTALKQ-----PAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLE 168
Query: 338 LEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
LEKEF YL RR ++ L L+ERQIKIWFQNRRMK K+ H
Sbjct: 169 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDH 213
>sp|P31257|HXC10_MOUSE Homeobox protein Hox-C10 OS=Mus musculus GN=Hoxc10 PE=2 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
Query: 376 MKLKRTH 382
MKLK+ +
Sbjct: 321 MKLKKMN 327
>sp|A2T6F8|HXC10_MACNE Homeobox protein Hox-C10 OS=Macaca nemestrina GN=HOXC10 PE=3 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
Query: 376 MKLKRTH 382
MKLK+ +
Sbjct: 321 MKLKKMN 327
>sp|A2D635|HXC10_MACMU Homeobox protein Hox-C10 OS=Macaca mulatta GN=HOXC10 PE=3 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
Query: 376 MKLKRTH 382
MKLK+ +
Sbjct: 321 MKLKKMN 327
>sp|Q9YGT5|HXA9B_DANRE Homeobox protein Hox-A9b OS=Danio rerio GN=hoxa9b PE=2 SV=3
Length = 253
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 14/128 (10%)
Query: 261 TSSILLA----HLQQVQKDLGLGASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHK 316
T ++L+A + Q ++ + A + S ++ IP+ L P P S N +H
Sbjct: 131 THTLLVAETDNNTTQTERKVPDDAVSNGSHDEKIPAETKLDLDPNNPSS------NWLHA 184
Query: 317 NLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRM 376
+T + R Y+ HQ +ELEKEF YL DRR +++ L LTERQ+KIWFQNRRM
Sbjct: 185 K----STRKKRCPYTKHQTLELEKEFLFNMYLSRDRRYEVARLLNLTERQVKIWFQNRRM 240
Query: 377 KLKRTHPD 384
K+K+ + D
Sbjct: 241 KMKKCNKD 248
>sp|A2T7H7|HXC10_PONPY Homeobox protein Hox-C10 OS=Pongo pygmaeus GN=HOXC10 PE=3 SV=1
Length = 342
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 261 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRR 320
Query: 376 MKLKRTH 382
MKLK+ +
Sbjct: 321 MKLKKMN 327
>sp|P50209|HXA9_AMBME Homeobox protein Hox-A9 (Fragment) OS=Ambystoma mexicanum GN=HOXA9
PE=2 SV=1
Length = 143
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 63/112 (56%), Gaps = 6/112 (5%)
Query: 275 DLGLGASDSLSSEKDIPSNLDLSQIP--KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSS 332
D G +D SSE P ++ KP ++ +N +H +T + R Y+
Sbjct: 32 DYGSSPADKQSSEGAFPEAPAETEASGDKPAIDPNNPAANWLHAR----STRKKRCPYTK 87
Query: 333 HQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
HQ +ELEKEF YL DRR +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 88 HQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 139
>sp|Q90469|HXDAA_DANRE Homeobox protein Hox-D10a OS=Danio rerio GN=hoxd10a PE=2 SV=4
Length = 332
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 251 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 310
Query: 376 MKLKR 380
MKLK+
Sbjct: 311 MKLKK 315
>sp|P31249|HXD3_HUMAN Homeobox protein Hox-D3 OS=Homo sapiens GN=HOXD3 PE=1 SV=3
Length = 432
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+
Sbjct: 196 RVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 251
>sp|P31272|HXB9_XENLA Homeobox protein Hox-B9 OS=Xenopus laevis GN=hoxb9 PE=2 SV=1
Length = 232
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 309 TYSNQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQI 367
T+ N N L + R ++ YS +Q +ELEKEF+ YL DRR +++ L L+ERQ+
Sbjct: 152 THQNNPSANWLHARSSRKKRCPYSKYQTLELEKEFKFNMYLTRDRRHEVARLLNLSERQV 211
Query: 368 KIWFQNRRMKLKRTHPD 384
KIWFQNRRMK+K+ + D
Sbjct: 212 KIWFQNRRMKMKKLNKD 228
>sp|O93353|HXA3_CHICK Homeobox protein Hox-A3 OS=Gallus gallus GN=HOXA3 PE=2 SV=2
Length = 413
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 42/61 (68%)
Query: 320 QCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
Q ++ R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K
Sbjct: 170 QTSSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 229
Query: 380 R 380
+
Sbjct: 230 K 230
>sp|P10178|HMB3_TRIGR Homeobox protein HB3 (Fragment) OS=Tripneustes gratilla PE=3 SV=1
Length = 108
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 42/58 (72%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R RQ Y+ Q +ELEKEF + Y+ RR +++ LGL+ERQIKIWFQNRRMK KR H
Sbjct: 29 RGRQTYTRQQTLELEKEFHFSRYVTRRRRFEIAQSLGLSERQIKIWFQNRRMKWKREH 86
>sp|P09027|HXD3_MOUSE Homeobox protein Hox-D3 OS=Mus musculus GN=Hoxd3 PE=2 SV=4
Length = 433
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+
Sbjct: 197 RVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 252
>sp|Q9PWD6|HXA10_MORSA Homeobox protein Hox-A10 OS=Morone saxatilis GN=hoxa10 PE=3 SV=1
Length = 289
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 208 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVHLTDRQVKIWFQNRR 267
Query: 376 MKLKR 380
MKLK+
Sbjct: 268 MKLKK 272
>sp|Q9PWL7|HXBAA_DANRE Homeobox protein Hox-B10a OS=Danio rerio GN=hoxb10a PE=2 SV=2
Length = 279
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/100 (45%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 286 SEKDI-PSNL--DLSQIPKPPPSSSHTYSNQIHKN-LLQCNTGRFRQV-YSSHQIVELEK 340
S+ DI P+NL D ++ K P + + + N L GR ++ YS HQI+ELEK
Sbjct: 164 SKDDIEPNNLQTDFTRGDKTPREKTQDVTLENAANGWLSAKAGRKKRCPYSKHQILELEK 223
Query: 341 EFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
EF YL +RR +S+ + LT+RQ+KIWFQNRRMKLK+
Sbjct: 224 EFLFNMYLTRERRLEISRSINLTDRQVKIWFQNRRMKLKK 263
>sp|O13074|HXB4A_TAKRU Homeobox protein Hox-B4a OS=Takifugu rubripes GN=hoxb4a PE=3 SV=2
Length = 288
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 12/102 (11%)
Query: 310 YSNQIHKNLLQCN-TG----RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTE 364
+ ++H N++ N TG R R Y+ Q++ELEKEF YL RR ++ L L+E
Sbjct: 142 WMKKVHVNIVSSNYTGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHTLCLSE 201
Query: 365 RQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQ 406
RQIKIWFQNRRMK K+ H +++ RS S TN Q
Sbjct: 202 RQIKIWFQNRRMKWKKDH-------KLPNTKVRSGSTNTNSQ 236
>sp|Q1KL16|HXAAA_TAKRU Homeobox protein Hox-A10a OS=Takifugu rubripes GN=hoxa10a PE=3 SV=1
Length = 287
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 206 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVHLTDRQVKIWFQNRR 265
Query: 376 MKLKR 380
MKLK+
Sbjct: 266 MKLKK 270
>sp|P09090|ZEN2_DROME Protein zerknuellt 2 OS=Drosophila melanogaster GN=zen2 PE=2 SV=2
Length = 252
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
R R +SS Q++ELE+EF L YL RR +S+ L LTERQ+KIWFQNRRMKLK++
Sbjct: 45 RSRTAFSSLQLIELEREFHLNKYLARTRRIEISQRLALTERQVKIWFQNRRMKLKKS 101
>sp|P28359|HXD10_MOUSE Homeobox protein Hox-D10 OS=Mus musculus GN=Hoxd10 PE=1 SV=2
Length = 340
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
Query: 376 MKLKR 380
MKLK+
Sbjct: 319 MKLKK 323
>sp|P09632|HXB8_MOUSE Homeobox protein Hox-B8 OS=Mus musculus GN=Hoxb8 PE=2 SV=2
Length = 243
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 40/56 (71%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R RQ YS +Q +ELEKEF YL RR +S LGLTERQ+KIWFQNRRMK K+
Sbjct: 148 RGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK 203
>sp|P17481|HXB8_HUMAN Homeobox protein Hox-B8 OS=Homo sapiens GN=HOXB8 PE=2 SV=2
Length = 243
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 40/56 (71%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R RQ YS +Q +ELEKEF YL RR +S LGLTERQ+KIWFQNRRMK K+
Sbjct: 148 RGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKK 203
>sp|A2D5V0|HXD10_LAGLA Homeobox protein Hox-D10 OS=Lagothrix lagotricha GN=HOXD10 PE=3
SV=1
Length = 340
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
Query: 376 MKLKR 380
MKLK+
Sbjct: 319 MKLKK 323
>sp|P28358|HXD10_HUMAN Homeobox protein Hox-D10 OS=Homo sapiens GN=HOXD10 PE=1 SV=2
Length = 340
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
Query: 376 MKLKR 380
MKLK+
Sbjct: 319 MKLKK 323
>sp|A1YFT7|HXD10_SAGLB Homeobox protein Hox-D10 OS=Saguinus labiatus GN=HOXD10 PE=3 SV=1
Length = 340
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
Query: 376 MKLKR 380
MKLK+
Sbjct: 319 MKLKK 323
>sp|P83950|UBX_DROSI Homeotic protein ultrabithorax OS=Drosophila simulans GN=Ubx PE=3
SV=1
Length = 389
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 295 DLSQIPKPPPSSSHTYSNQIHKNLLQCNTG------RFRQVYSSHQIVELEKEFRLTNYL 348
DL+Q YS + +LL G R RQ Y+ +Q +ELEKEF +YL
Sbjct: 261 DLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYL 320
Query: 349 PSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
RR ++ L LTERQIKIWFQNRRMKLK+
Sbjct: 321 TRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352
>sp|P83949|UBX_DROME Homeotic protein ultrabithorax OS=Drosophila melanogaster GN=Ubx
PE=1 SV=1
Length = 389
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 295 DLSQIPKPPPSSSHTYSNQIHKNLLQCNTG------RFRQVYSSHQIVELEKEFRLTNYL 348
DL+Q YS + +LL G R RQ Y+ +Q +ELEKEF +YL
Sbjct: 261 DLTQYGGISTDMGKRYSESLAGSLLPDWLGTNGLRRRGRQTYTRYQTLELEKEFHTNHYL 320
Query: 349 PSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
RR ++ L LTERQIKIWFQNRRMKLK+
Sbjct: 321 TRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 352
>sp|Q1KKZ4|HXAAB_TAKRU Homeobox protein Hox-A10b OS=Takifugu rubripes GN=hoxa10b PE=3 SV=1
Length = 331
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 312 NQIHKNLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIW 370
N+ N L +GR ++ Y+ HQ +ELEKEF YL +RR +S+ + LT+RQ+KIW
Sbjct: 245 NETAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIW 304
Query: 371 FQNRRMKLKR 380
FQNRRMKLK+
Sbjct: 305 FQNRRMKLKK 314
>sp|O42370|HXD3A_DANRE Homeobox protein Hox-D3a OS=Danio rerio GN=hoxd3a PE=2 SV=2
Length = 396
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+
Sbjct: 163 RVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 218
>sp|A2T7D1|HXD10_PANTR Homeobox protein Hox-D10 OS=Pan troglodytes GN=HOXD10 PE=3 SV=1
Length = 340
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 317 NLLQCNTGRFRQV-YSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
N L +GR ++ Y+ HQ +ELEKEF YL +RR +SK + LT+RQ+KIWFQNRR
Sbjct: 259 NWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRR 318
Query: 376 MKLKR 380
MKLK+
Sbjct: 319 MKLKK 323
>sp|A1L2P5|HXD3_XENLA Homeobox protein Hox-D3 OS=Xenopus laevis GN=hoxd3 PE=2 SV=1
Length = 413
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+
Sbjct: 180 RVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 235
>sp|Q8JH55|HXB8B_DANRE Homeobox protein Hox-B8b OS=Danio rerio GN=hoxb8b PE=2 SV=1
Length = 247
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 40/58 (68%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R RQ YS +Q +ELEKEF YL RR +S L LTERQ+KIWFQNRRMK K+ H
Sbjct: 147 RGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEH 204
>sp|Q3V5Z9|HXD3_ORYLA Homeobox protein Hox-D3 OS=Oryzias latipes GN=hoxd3a PE=3 SV=1
Length = 395
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 39/56 (69%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R Y+S Q+VELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+
Sbjct: 162 RVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,842,119
Number of Sequences: 539616
Number of extensions: 9799975
Number of successful extensions: 42825
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1170
Number of HSP's successfully gapped in prelim test: 669
Number of HSP's that attempted gapping in prelim test: 39511
Number of HSP's gapped (non-prelim): 3902
length of query: 575
length of database: 191,569,459
effective HSP length: 123
effective length of query: 452
effective length of database: 125,196,691
effective search space: 56588904332
effective search space used: 56588904332
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)