RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4272
(575 letters)
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 92.6 bits (230), Expect = 3e-23
Identities = 34/58 (58%), Positives = 41/58 (70%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R RQ Y+ +Q +ELEKEF +YL RR ++ L LTERQIKIWFQNRRMKLK+
Sbjct: 22 RGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 91.3 bits (227), Expect = 6e-23
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
+ +S+ Q +ELEK+F YL RK L+K L L+ERQ+K WFQNRR K +R+ P
Sbjct: 9 GGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 90.9 bits (226), Expect = 9e-23
Identities = 33/58 (56%), Positives = 40/58 (68%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R RQ Y+ +Q +ELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+ +
Sbjct: 4 RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 90.5 bits (225), Expect = 1e-22
Identities = 31/58 (53%), Positives = 37/58 (63%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R R Y+ Q++ELEKEF Y+ RR L+ L LTER IKIWFQNRRMK K+
Sbjct: 5 RTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 90.5 bits (225), Expect = 1e-22
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
R R +SS Q+ L++EF YL RR+ LS ELGL E QIKIWF+N+R K+K++
Sbjct: 5 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 90.1 bits (224), Expect = 2e-22
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R+R ++ Q+ LEKEF NY+ RR L+ +L L E IK+WFQNRRMK KR
Sbjct: 3 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 89.8 bits (223), Expect = 3e-22
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
R R V++ Q++ LEK F YL + R L++ LGL++ Q+K W+QNRRMK K++ P
Sbjct: 19 RSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 89.1 bits (221), Expect = 7e-22
Identities = 34/62 (54%), Positives = 40/62 (64%)
Query: 321 CNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
T R R Y+ +Q +ELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+
Sbjct: 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85
Query: 381 TH 382
H
Sbjct: 86 EH 87
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 88.2 bits (219), Expect = 8e-22
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R R ++S QI ELE+ F YL + R LS +L L Q+KIWF+NRR + K
Sbjct: 4 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 88.2 bits (219), Expect = 8e-22
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
+ R +YSS Q+ L++ F+ T YL R L+ LGLT+ Q+KIWFQN+R K+K++ P
Sbjct: 9 KPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 88.0 bits (218), Expect = 1e-21
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
+ R YS Q+ ELE+E+ ++ D+R+ +S L+ERQI IWFQNRR+K K++ P
Sbjct: 9 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 88.0 bits (218), Expect = 2e-21
Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R +++ Q+ ELEKEF YL RR ++ L L E Q+KIWFQNRRMK K+
Sbjct: 36 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 86.8 bits (215), Expect = 3e-21
Identities = 36/74 (48%), Positives = 48/74 (64%)
Query: 311 SNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIW 370
+N L +T + R Y+ HQ +ELEKEF YL DRR +++ L LTERQ+KIW
Sbjct: 1 NNPAANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60
Query: 371 FQNRRMKLKRTHPD 384
FQNRRMK+K+ + D
Sbjct: 61 FQNRRMKMKKINKD 74
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 86.1 bits (214), Expect = 3e-21
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R +++ Q++ LE++FR YL R S L LTE Q+KIWFQNRR K KR
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 86.1 bits (214), Expect = 4e-21
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
+ + S LE+ FR L S ++ ++K+ G+T Q+++WF N+RM+ K
Sbjct: 7 KGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 85.0 bits (211), Expect = 9e-21
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R V+S Q+ L+ F+ YL + + LS L L+ +Q+K WFQN+RMK KR
Sbjct: 5 KMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 84.7 bits (210), Expect = 1e-20
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
S Q++ELE++F YL + R L+K L LTE Q+KIWFQNRR K KR
Sbjct: 6 HHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 84.5 bits (209), Expect = 2e-20
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
+ R Y+ Q+ ELE+E+ ++ D+R+ +S L+ERQ+ IWFQNRR+K K+
Sbjct: 9 KKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 84.9 bits (210), Expect = 2e-20
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 315 HKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNR 374
++N + R ++ Q+ ELEK F YL S R L++ L +T+ Q+K WFQNR
Sbjct: 9 YQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNR 68
Query: 375 RMKLKRTHPD 384
R K +R +
Sbjct: 69 RTKWRRQTAE 78
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 84.5 bits (209), Expect = 3e-20
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 302 PPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG 361
P+S+ S ++ + + R V+SS Q+ L F+ YL + + LS L
Sbjct: 2 KQPTSAEN-SVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILN 60
Query: 362 LTERQIKIWFQNRRMKLKR 380
L+ +Q+K WFQN+RMK KR
Sbjct: 61 LSYKQVKTWFQNQRMKSKR 79
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 82.4 bits (204), Expect = 7e-20
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 329 VYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+S Q++ELE+ F YL S R L+K L +T+ Q+K WFQNRR K +R
Sbjct: 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 81.9 bits (203), Expect = 1e-19
Identities = 25/55 (45%), Positives = 34/55 (61%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
+ R ++S Q+ ELE+ F+ YL + R L+ L LT Q+KIWFQNRR K K
Sbjct: 4 KPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 81.3 bits (201), Expect = 3e-19
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R +++ Q ELE+ FR YL + R+ L+ + LT Q+KIWFQN R K KR
Sbjct: 11 KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKR 66
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 80.1 bits (198), Expect = 6e-19
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R ++S Q+ ELE+ F+ YL + R+ L+ + LT Q+KIWFQN R K+KR
Sbjct: 4 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 76.5 bits (188), Expect = 1e-16
Identities = 20/86 (23%), Positives = 34/86 (39%)
Query: 295 DLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRK 354
D S S + + R ++ V LEK F S+
Sbjct: 73 DAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDIT 132
Query: 355 VLSKELGLTERQIKIWFQNRRMKLKR 380
+++++L + + I++WF NRR K KR
Sbjct: 133 LIAEQLNMEKEVIRVWFSNRRQKEKR 158
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 70.5 bits (173), Expect = 1e-15
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R ++ +Q+ L+ F Y D + LS L L R I +WFQN R K +++ P
Sbjct: 9 SSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 73.5 bits (180), Expect = 2e-15
Identities = 20/79 (25%), Positives = 28/79 (35%)
Query: 306 SSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTER 365
SS + K Q + R LE F + L+ L L +
Sbjct: 82 SSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKE 141
Query: 366 QIKIWFQNRRMKLKRTHPD 384
+++WF NRR K KR P
Sbjct: 142 VVRVWFCNRRQKEKRMTPA 160
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 69.4 bits (170), Expect = 4e-15
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 324 GRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
++ S Q+ L+ F + + L+K GL+ R+++ WF +RR +
Sbjct: 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 65.8 bits (161), Expect = 6e-14
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R R + Q+ L + F + N ++ K ++ + GL ++ IK WF+N K +++ P
Sbjct: 9 RPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 67.4 bits (164), Expect = 2e-13
Identities = 17/99 (17%), Positives = 31/99 (31%)
Query: 283 SLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEF 342
+ S + + L+ + + + R ++ I L F
Sbjct: 53 TPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYF 112
Query: 343 RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
++KEL +++WF NRR LK T
Sbjct: 113 EKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKNT 151
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 64.4 bits (157), Expect = 2e-13
Identities = 15/60 (25%), Positives = 32/60 (53%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R R + Q+ L +++ L + ++ E+GL +R +++WFQN R + +++ P
Sbjct: 19 RLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPS 78
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 63.7 bits (155), Expect = 4e-13
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPS-DRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
R R S + L+ P + LS +L L + I +FQN+R +K + P
Sbjct: 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68
Query: 384 D 384
Sbjct: 69 S 69
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 66.2 bits (161), Expect = 4e-13
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R S LE+ F + S +++EL L + +++WF NRR + KR
Sbjct: 89 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 144
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 62.5 bits (152), Expect = 9e-13
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLP-SDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ + + Q+ LE F N P +++ E GLTE Q + WF+ R + +R
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 61.0 bits (148), Expect = 3e-12
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
+ + QI L+ F + + L + GL +IK WF + R + +R
Sbjct: 6 HHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 62.8 bits (152), Expect = 6e-12
Identities = 20/96 (20%), Positives = 36/96 (37%)
Query: 286 SEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLT 345
S K++ L + ++ L R R + LE F +
Sbjct: 59 SLKNMSKLRPLLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKS 118
Query: 346 NYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
+ ++ +LGL + +++WF NRR K KR+
Sbjct: 119 PKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 58.9 bits (143), Expect = 2e-11
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R R ++ +QI LE FR+ Y D + L+++L L +I+IWFQNRR KLKR+H
Sbjct: 3 RPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 58.2 bits (141), Expect = 4e-11
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R + HQ+ ++ F + + + K L+++ GLT+R +++WFQN R K +R
Sbjct: 9 RMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 57.4 bits (139), Expect = 6e-11
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R V + Q+ L + + ++ L + GL+ R I++WFQN+R K K+
Sbjct: 5 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 57.2 bits (138), Expect = 9e-11
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
+ Q+ LE F + L E +T R+I WF RR K+
Sbjct: 15 APEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 59.5 bits (143), Expect = 1e-10
Identities = 14/85 (16%), Positives = 29/85 (34%)
Query: 301 KPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL 360
++ Q H + R V++ Q L F+ + + +S++L
Sbjct: 75 SALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL 134
Query: 361 GLTERQIKIWFQNRRMKLKRTHPDM 385
GL + +F N R + +
Sbjct: 135 GLELSTVSNFFMNARRRSLDKWLEH 159
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.3 bits (153), Expect = 2e-10
Identities = 84/581 (14%), Positives = 173/581 (29%), Gaps = 192/581 (33%)
Query: 136 HIQYECGKAPQFPCLYCSYR---ARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELS 192
H+ +E G+ Q+ Y+ + + + K D +++ + E+ +
Sbjct: 6 HMDFETGEH-QY-----QYKDILSVFEDAFVDNFDCKDV--QDMPKSILSKEEI--DHII 55
Query: 193 PGPKAENRHRF-------------REFLNEHRNLERNVS--HEEIRTHKKHEQP-RKESS 236
A + ++F+ E L N I+T ++ QP
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE--VLRINYKFLMSPIKTEQR--QPSMMTRM 111
Query: 237 YKETENTQFNSETNDLSKL----EEPNKTSSILLAHLQQVQKD--------LGLG----A 280
Y E + +N +K +P L L +++ LG G A
Sbjct: 112 YIEQRDRLYND-NQVFAKYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 281 SDSLSSEK------------------------DIPSNLDLSQI-PKPPPSSSHTYSNQIH 315
D S K ++ L L QI P S H+ + ++
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLR 226
Query: 316 KNLLQCNTGRFRQVYSSHQ-----IV-------ELEKEF----------R---LTNYLPS 350
+ +Q R++ S +V + F R +T++L +
Sbjct: 227 IHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 351 DRRKVLSKE---LGLTERQIK----IWFQNRRMKLKR----THP---DMVVEYVKESSEA 396
+S + + LT ++K + R L R T+P ++ E +++
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD---G 340
Query: 397 RSASQKTNHQSAPADTSAPNTHMKSF------EEFIREHYERSAVPFPASQPGEHPLATG 450
+ H + T ++S E+ R+ ++R +V FP S P
Sbjct: 341 LATWDNWKHV----NCDKLTTIIESSLNVLEPAEY-RKMFDRLSV-FPPSAH--IPTILL 392
Query: 451 EL---HGSPLEMQTLMEENASKLLLEK--------------------LREQTLEKHLRE- 486
L ++ ++ + L+EK E L + + +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 487 ---------NHLPVPSVPPL-----------LAGALPPGQVEKLNDLYENERNMLIQELI 526
+ L P L L P ++ ++ + R +
Sbjct: 453 YNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR------FL 503
Query: 527 RKKLGLLIQNNQNGGHAEDAPTDLSRKLKSDMEEDEAVKEE 567
+K+ G + L + K + +++ E
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYER 543
Score = 46.8 bits (110), Expect = 2e-05
Identities = 43/312 (13%), Positives = 94/312 (30%), Gaps = 82/312 (26%)
Query: 12 VSSEDSKTSPQNRKISPSKGVPSLLP--MKD-IRTSDPDWPRPTASFAATIADVATKTL- 67
+ + +P S++ ++D + T D W TI + + L
Sbjct: 311 LDCRPQDLPREVLTTNPR--RLSIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLNVLE 367
Query: 68 -PVIQELLSQ----RDGKPVGKATLPSPLKAKL---SDYENKMKNVRESIRQKRLAQGLT 119
+++ + + P+ L + + + M V + + L +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEK-- 419
Query: 120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCL-------YCSYRARHKHDLKKHVT----F 168
Q S ++ +++ + K L Y + DL +
Sbjct: 420 --QPKESTISIPSI--YLELKV-KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 169 KHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFRE-FLNEHRNLERNVSHE------- 220
H + H + ++ E FR FL+ R LE+ + H+
Sbjct: 475 SHIGH--HLKNIE--------------HPERMTLFRMVFLD-FRFLEQKIRHDSTAWNAS 517
Query: 221 --------EIRTHKKH---EQPRKESSYKETENTQFNSETN-------DLSKLEEPNKTS 262
+++ +K + P+ E + E N DL ++ +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 263 SILLAHLQQVQK 274
+I +QVQ+
Sbjct: 578 AIFEEAHKQVQR 589
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 55.8 bits (134), Expect = 4e-10
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ Q+ LE F +++ L E L+ R+I WF RR
Sbjct: 21 TQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 55.1 bits (133), Expect = 5e-10
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R ++ Q+ LE F T Y R+ ++ ++ L E ++++WF+NRR K ++
Sbjct: 9 RERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 64
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 54.2 bits (131), Expect = 9e-10
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R ++S Q+ +LE F+ Y R+ ++ LTE ++++WF+NRR K ++
Sbjct: 5 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 54.6 bits (131), Expect = 9e-10
Identities = 14/70 (20%), Positives = 29/70 (41%)
Query: 331 SSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYV 390
++ Q+ L+ F ++ L + L + LT R+I WF ++ M ++
Sbjct: 19 TAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKMEIDES 78
Query: 391 KESSEARSAS 400
S + +S
Sbjct: 79 NAGSSSGPSS 88
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 53.9 bits (130), Expect = 1e-09
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
R R +++ Q+ LE F+ T Y R+ L++++ L E ++++WF+NRR K +R+
Sbjct: 9 RHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 53.4 bits (129), Expect = 1e-09
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
++S Q+ ELEK F T+Y R+ L+ ++GLTE +I++WFQNRR K ++
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 53.2 bits (128), Expect = 2e-09
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R ++ QI LEKEF T+Y R+ L+ ++ L E +I++WF NRR K +R
Sbjct: 9 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 52.4 bits (126), Expect = 4e-09
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 330 YSSHQIVELEKEFRLTNYLPSDR-RKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ Q+ LE F N P +++ E GLTE Q + WF+ R + +R
Sbjct: 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 52.1 bits (125), Expect = 5e-09
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSD-RRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
+ V LEK F P + R K LSK+L + R+I+ WF++RR + K + P
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 52.0 bits (125), Expect = 6e-09
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R +S+ Q+ ELE+ F T Y R+ L++ LTE +I++WFQNRR +L++
Sbjct: 20 RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRK 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 1e-07
Identities = 89/650 (13%), Positives = 172/650 (26%), Gaps = 265/650 (40%)
Query: 40 DIRTSDPDWPRPTASF--AATIADVATKTLPVIQELLSQRDGKPVGKATL---------- 87
+ PTASF A+ + + K LP E + D +P A L
Sbjct: 15 SLEHV---LLVPTASFFIASQLQEQFNKILPEPTEGFAA-DDEPTTPAELVGKFLGYVSS 70
Query: 88 ---PSP-------LKAKLSDYENKM---KNVRESIRQKRLAQGLTCLQCGRSYCRPYNLK 134
PS L L+++EN ++ ++ K L + T L + + Y
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNY--- 126
Query: 135 RHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAV---QEELEVTTKEL 191
+ P + + L + V +A A+ Q + +EL
Sbjct: 127 ----ITARIMAKRP-----FDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEEL 173
Query: 192 SPGPKAENRHRF-------REFLNEHRNLERNVSHEEIRTHKKHEQPRKESSYKETENTQ 244
R + + + + + K Q
Sbjct: 174 --------RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL------------ 213
Query: 245 FNSETNDLSK-LEEPNKT------SSIL----------LAHLQQVQKDLGLG---ASDSL 284
++ + LE P+ T SI LAH K LG L
Sbjct: 214 ------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYL 267
Query: 285 SS----EKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQ------ 334
+ + + + + + ++ + ++ + T F ++
Sbjct: 268 KGATGHSQGLVTAV--------AIAETDSWES-FFVSVRKAITVLFFIGVRCYEAYPNTS 318
Query: 335 ---------------------------IVELEKEFRLTN-YLPSDRR-----------KV 355
+++ TN +LP+ ++ V
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 356 LS---KEL-GLTER-----------QIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSAS 400
+S + L GL Q +I F R+ ++
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-------LKFSNRFL---------- 421
Query: 401 QKTNHQSAPADTSAP-NTH-MKSFEEFIREHYERSAVPFPASQ---PGEHPLATGELHGS 455
P ++P ++H + + I + ++ V F A P G
Sbjct: 422 --------P--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGS---- 466
Query: 456 PLEMQTLMEENASKLLLEKLREQTLEK--------HLRENHLPVPSVPPLLAGALPPGQV 507
+++ L S + E++ + + + H+ L G PG
Sbjct: 467 --DLRVL-----SGSISERIVDCIIRLPVKWETTTQFKATHI-------LDFG---PGGA 509
Query: 508 EKLNDLYENERNMLIQELIRKKLGLLIQNNQNG--------GHAEDAPTD 549
LG+L N++G G + P D
Sbjct: 510 --------------------SGLGVLTHRNKDGTGVRVIVAGTLDINPDD 539
Score = 40.0 bits (93), Expect = 0.002
Identities = 57/297 (19%), Positives = 93/297 (31%), Gaps = 110/297 (37%)
Query: 326 FRQVY--SSHQIV-----ELEKEF------RLT-NYL------PSDRRKVLSKEL-GLTE 364
F+ Y S IV L F R+ NY D + K + E
Sbjct: 1653 FKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINE 1712
Query: 365 RQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQSAPADTSAPNTHMKSFEE 424
F++ + L T Q T Q PA T +FE+
Sbjct: 1713 HSTSYTFRSEKGLLSAT-------------------QFT--Q--PALTL---MEKAAFED 1746
Query: 425 FIREHYERSAVPFPASQPGEHPLATGE---LH---GS-PLEMQTLMEENASKLLLEKLRE 477
++ + +P A+ G H L GE L + E+ +++ R
Sbjct: 1747 -LK---SKGLIPADATFAG-HSL--GEYAALASLADVMSI-------ESLVEVV--FYRG 1790
Query: 478 QTLEKHLRENHLPVPSVPPLLAG-------ALPPGQVEKLNDLYENERNMLIQELIRKKL 530
T++ +VP G A+ PG+V + E + E + K+
Sbjct: 1791 MTMQV----------AVPRDELGRSNYGMIAINPGRVAA---SFSQEALQYVVERVGKRT 1837
Query: 531 GLLIQ----NNQN-----GGHAE--DAPTDLSRKLKS---DMEE------DEAVKEE 567
G L++ N +N G D T++ +K D+ E E V+
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 32.3 bits (73), Expect = 0.50
Identities = 57/354 (16%), Positives = 107/354 (30%), Gaps = 109/354 (30%)
Query: 14 SEDSKTSPQNRKISPSKGVPSLLPMKDIRT--SDPDWPRPTASFAATIADVATKTLPVI- 70
SE +T+ K+ +G+ +I +P P + +I ++ P+I
Sbjct: 196 SELIRTTLDAEKVFT-QGL-------NILEWLENPS-NTPDKDYLLSIP-IS---CPLIG 242
Query: 71 --Q----------------ELLSQRDGK-PVGKATLPSPLKAKLSDYENKMKNVRESIRQ 111
Q EL S G + + + A+ +E+ +VR++I
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT- 301
Query: 112 KRLA--QGLTCLQC-GRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTF 168
+ G+ C + + P L+ ++ G P P L S +L +
Sbjct: 302 --VLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-VPS-PMLSIS-------NLTQ---- 346
Query: 169 KHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRN---------LERNVSH 219
+ VQ+ + T L + +N +N L
Sbjct: 347 ---------EQVQDYVNKTNSHL-----PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 220 -EEIRTHKKHEQPRKE-SSYKETENTQFNSETNDLSKLEEPNKT---SSILLAHLQQVQK 274
+ + +Q R S K + +F L P + S +L+ + K
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNRF---------L--PVASPFHSHLLVPASDLINK 441
Query: 275 DLGLGASDSLSSEKDIP-----SNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNT 323
DL + + IP DL S I + ++ C
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLR-----------VLSGSISERIVDCII 484
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 46.0 bits (109), Expect = 7e-07
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 338 LEKEFRLTNYLPS-DRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
LEK F P R + LSK+L R I+ WF+ RR + K + P
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGP 61
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 45.9 bits (108), Expect = 1e-06
Identities = 17/93 (18%), Positives = 28/93 (30%)
Query: 302 PPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG 361
S + + + Q+ L+ F T + + L+KE G
Sbjct: 4 HHHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESG 63
Query: 362 LTERQIKIWFQNRRMKLKRTHPDMVVEYVKESS 394
L I WF + R K + Y +S
Sbjct: 64 LARTDIVSWFGDTRYAWKNGNLKWYYYYQSANS 96
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 45.8 bits (108), Expect = 2e-06
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELG---------------LTERQIKI 369
R + + +E F Y +R+ ++ +T ++
Sbjct: 9 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68
Query: 370 WFQNRRMKLKRTH 382
WF NRR ++KR
Sbjct: 69 WFANRRKEIKRRA 81
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 43.9 bits (104), Expect = 4e-06
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 118 LTCLQCGRSYCRPYNLKRHIQ---YECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA 172
L C CG + + +L H + FPC +C R + H + H A
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALR-FPCEFCGKRFEKPDSVAAHRSKSHPA 64
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 42.3 bits (99), Expect = 2e-05
Identities = 14/74 (18%), Positives = 27/74 (36%)
Query: 322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
++G + + Q+ L+ F + + + L + GL +I WF + R LK
Sbjct: 2 SSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61
Query: 382 HPDMVVEYVKESSE 395
+ S
Sbjct: 62 QLKWFRDNASGPSS 75
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 39.3 bits (91), Expect = 1e-04
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHV 166
C +CG +P LK+HI+ P + C YC++ + K +L KH+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRP-YHCTYCNFSFKTKGNLTKHM 49
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 37.1 bits (87), Expect = 9e-04
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C +C S L+ H + C P F C YCS+ + +L KH
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRP-FKCNYCSFDTKQPSNLSKH 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 38.9 bits (90), Expect = 0.002
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C QC R + + +++ HI +C + C C+ + D + H
Sbjct: 112 DCPQCQRPFQK-FHINIHILKDCPRRQVS-CDNCAASMAFE-DKEIH 155
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 36.7 bits (86), Expect = 0.002
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECG-KAPQFPCLYCSYRARHKHDLKKHVTFKH 170
C C + + +K HI + +F C +C K DL H+ +H
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 36.8 bits (84), Expect = 0.004
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHA 171
C C + +LK+HI+Y C C HV KH
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYT---EHTKVCPVCKKEFTSTDSALDHVCKKHN 125
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 34.2 bits (78), Expect = 0.005
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 365 RQIKIWFQNRRMKLKR 380
RQIKIWFQNRRMK K+
Sbjct: 1 RQIKIWFQNRRMKWKK 16
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 35.5 bits (81), Expect = 0.006
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 102 MKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYE---CGKAPQFPCLYCSYRARH 158
+ + + K++ G C C H+ E + C+ C++ +
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKR 62
Query: 159 KHDLKKHVTFKHAA 172
L +H H
Sbjct: 63 YDALSEHNLKYHPG 76
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 34.6 bits (79), Expect = 0.007
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 333 HQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
+ + L+ + L ++ ++ + L +K WF+ +
Sbjct: 13 NLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 70
Score = 34.4 bits (78), Expect = 0.008
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 322 NTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMK 377
++G I LE+ + L LS+ L+ +Q+ WF +R +
Sbjct: 5 SSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQ 60
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 34.1 bits (79), Expect = 0.010
Identities = 14/54 (25%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYEC--GKAPQFPCLYCSYRARHKHDLKKHVTFKH 170
C C R Y N RH +PC +C K ++ HV H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKV-YPCPFCFKEFTRKDNMTAHVKIIH 64
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 33.8 bits (78), Expect = 0.010
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLK 379
+ L K L+ QIK W NRR K K
Sbjct: 26 LDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 57
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 34.8 bits (79), Expect = 0.011
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 21/79 (26%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL---------------------GLT 363
R R + L + + + R+ L +E +T
Sbjct: 11 RNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVT 70
Query: 364 ERQIKIWFQNRRMKLKRTH 382
E ++ WF NRR + H
Sbjct: 71 EVRVYNWFANRRKEEAFRH 89
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 36.9 bits (84), Expect = 0.011
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 21/122 (17%)
Query: 280 ASDSLSSEKDIPSNLDLSQIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELE 339
S ++K L S S+ R R + L
Sbjct: 99 QSSGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILY 158
Query: 340 KEFRLTNYLPSDRRKVLSKEL---------------------GLTERQIKIWFQNRRMKL 378
+ + + R+ L +E +TE ++ WF NRR +
Sbjct: 159 QAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218
Query: 379 KR 380
Sbjct: 219 AF 220
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 36.4 bits (83), Expect = 0.014
Identities = 21/188 (11%), Positives = 44/188 (23%), Gaps = 27/188 (14%)
Query: 220 EEIRTHKKHEQPRKESSYKETENTQFNSETNDLSKLEEPNKTSSILLAHLQQ--VQKDLG 277
E + + Q + + + + + + + L Q + + L
Sbjct: 6 ENLSPEEAAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLN 65
Query: 278 LGASDSLSSEKDIPSNLDLSQ----IPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSH 333
G + + Q L R R +
Sbjct: 66 KGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPA 125
Query: 334 QIVELEKEFRLTNYLPSDRRKVLSKEL---------------------GLTERQIKIWFQ 372
L + + + R+ L +E +TE ++ WF
Sbjct: 126 SQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFA 185
Query: 373 NRRMKLKR 380
NRR +
Sbjct: 186 NRRKEEAF 193
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 34.4 bits (79), Expect = 0.014
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTNHQS 407
PS+ K L+K+ G+T Q+ WF N+R R ++ + + A + + S
Sbjct: 29 PSEEAKEELAKKCGITVSQVSNWFGNKR---IRYKKNIGKFQEEANIYAAKTAVTATNVS 85
Query: 408 A 408
A
Sbjct: 86 A 86
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 33.4 bits (75), Expect = 0.027
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 325 RFRQVYSSHQIVELEKEF----RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R +S + L+K + + ++ + ++ EL + ++ W NRR K +
Sbjct: 10 QDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 32.9 bits (75), Expect = 0.036
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 347 YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSAS 400
YL + + L K L+ QIK W RR K K E ++ S
Sbjct: 29 YLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA------PELADLLSGE 76
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 31.8 bits (73), Expect = 0.040
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 11/37 (29%)
Query: 119 TCLQCGRSYCRPYNLKRHIQY-----------ECGKA 144
C CG+ + RP +L HI+
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 32.9 bits (75), Expect = 0.046
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLK 379
+ L K L+ QIK W NRR K K
Sbjct: 55 LDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 31.8 bits (72), Expect = 0.047
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 107 ESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCS 153
S R + + C CG+ + Y+L RH G+ P + S
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKP-YSSGPSS 47
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 32.1 bits (73), Expect = 0.073
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSASQKTN 404
PS++ K LS++ L+ Q+ WF N R +R PDM+ + K+ ++ + +
Sbjct: 33 PSEQEKALLSQQTHLSTLQVCNWFINAR---RRLLPDMLRKDGKDPNQFTISRRGAK 86
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 31.1 bits (71), Expect = 0.12
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 123 CGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHV 166
C R + R L RHI+ G+ P F C C L H+
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTHI 69
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 31.3 bits (72), Expect = 0.15
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C C R++ R +L HI+ G+ P F C C + + K+H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 50
Score = 31.3 bits (72), Expect = 0.15
Identities = 11/56 (19%), Positives = 15/56 (26%), Gaps = 13/56 (23%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ------Y---ECGKAPQFPCLYCSYRARHKHDLKKH 165
C CGR + R KRH + + + LKK
Sbjct: 33 ACDICGRKFARSDERKRHRDIQHILPILEDKVEE--LLSKN--YHLENEVARLKKL 84
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 30.4 bits (69), Expect = 0.18
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEA 396
PS+ +K L+++ GLT Q+ WF N R +R M + +S+ A
Sbjct: 26 PSEEQKKQLAQDTGLTILQVNNWFINAR---RRIVQPM----IDQSNRA 67
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 31.0 bits (71), Expect = 0.18
Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 24/60 (40%)
Query: 119 TCLQCGRSYCRPYNLKRHI-------------QYECGKAPQFPCLYCSYRARHKHDLKKH 165
CGR + L H + CGK+ F K LK+H
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKS--F---------NFKKHLKEH 59
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 30.9 bits (71), Expect = 0.21
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C C R++ R +L HI+ G+ P F C C + + K+H
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKP-FACDICGRKFARSDERKRH 81
Score = 29.0 bits (66), Expect = 0.94
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 119 TCL--QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C C R + + +L RHI+ G+ P F C C L H
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKP-FQCRICMRNFSRSDHLTTH 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 30.4 bits (69), Expect = 0.21
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRTHPDM 385
PS+ K L+K+ G+T Q+ WF N+R++ K+
Sbjct: 29 PSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 30.5 bits (69), Expect = 0.29
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRTHPDMVVEYVKESSEARSA 399
PS+ K LS++ L+ QI WF N R +R PDM+ + + S S
Sbjct: 35 PSEEEKQMLSEKTNLSLLQISNWFINAR---RRILPDMLQQRRNDPSGPSSG 83
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 73
Score = 30.1 bits (68), Expect = 0.31
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRTHPD 384
P++ K ++ + LT Q+ WF N R ++ ++ P
Sbjct: 35 PTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 31.4 bits (72), Expect = 0.32
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 9/56 (16%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYEC---GKAPQFPCLYCSYRARHKH-----DLKKHV 166
C + + L HI E + F C + + L H+
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKE-FVCHWGGCSRELRPFKAQYMLVVHM 59
Score = 29.5 bits (67), Expect = 1.5
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 16/51 (31%)
Query: 122 QCGRSYCRPYNLKRHI------------QYECGKAPQFPCLYCSYRARHKH 160
C +SY R NLK H+ C K F S RA+H++
Sbjct: 74 GCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSK--AFSNA--SDRAKHQN 120
Score = 27.2 bits (61), Expect = 9.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 119 TCLQCGRSYCRPYNLKRHI 137
C + Y P +L++H+
Sbjct: 132 KLPGCTKRYTDPSSLRKHV 150
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 29.9 bits (68), Expect = 0.39
Identities = 14/81 (17%), Positives = 20/81 (24%), Gaps = 29/81 (35%)
Query: 119 TCLQCGRSYCRPYNLKRHI------------QYECGKA-----------------PQFPC 149
CG+++ + LK H C K P
Sbjct: 5 HFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD 64
Query: 150 LYCSYRARHKHDLKKHVTFKH 170
CS+ + KHV H
Sbjct: 65 DSCSFVGKTWTLYLKHVAECH 85
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 29.6 bits (67), Expect = 0.41
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 349 PSDRRKV-LSKELGLTERQIKIWFQNRRMKLKRT 381
PS+ K L+K+ G+T Q+ WF N+R++ K+
Sbjct: 31 PSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 29.4 bits (65), Expect = 0.49
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 333 HQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMK 377
+ L+ + + SD +S +GL + +K WF+ R++
Sbjct: 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein,
C2H2 type zinc-finger, structural genomics; NMR {Mus
musculus} SCOP: g.37.1.2 g.37.1.2
Length = 79
Score = 29.4 bits (66), Expect = 0.56
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 14/65 (21%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAAYLDHFQ 178
TC CG S + +++H+ C C+ C F Y H +
Sbjct: 12 TCNACGESVKKI-QVEKHVS-NCRNCECLSCIDCG------------KDFWGDDYKSHVK 57
Query: 179 AVQEE 183
+ E
Sbjct: 58 CISEG 62
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 30.6 bits (70), Expect = 0.57
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 12/38 (31%)
Query: 119 TCLQCGRSYCRPYNLKRH------------IQYECGKA 144
C +CG+++ LKRH CGK
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR 73
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 29.5 bits (67), Expect = 0.69
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 122 QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHV 166
C + R L RH + G P F C C+ L H+
Sbjct: 52 GCDWRFARSDELTRHYRKHTGAKP-FQCGVCNRSFSRSDHLALHM 95
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 31.7 bits (72), Expect = 0.73
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 339 EKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
E+ FR L S ++ ++K+ G+T Q+++WF N+RM+ K
Sbjct: 381 EQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 29.8 bits (68), Expect = 0.94
Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 16/53 (30%)
Query: 119 TCLQCGRSYCRPYNLKRHI------------QYECGKAPQFPCLYCSYRARHK 159
C C R + R +LK H C K +F RH
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQK--KFARS--DELVRHH 116
Score = 27.5 bits (62), Expect = 4.6
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C R + R LKRH + G P F C C + LK H
Sbjct: 40 DFKDCERRFSRSDQLKRHQRRHTGVKP-FQCKTCQRKFSRSDHLKTH 85
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 30.3 bits (69), Expect = 0.95
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 120 CLQCGRSYCRPYNLKRHI------------QYECGKA 144
C + G+S+ Y L HI CGK
Sbjct: 65 CPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKI 101
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 16/54 (29%)
Query: 119 TCLQCGRSYCRPYNLKRHI------------QYECGKAPQFPCLYCSYRARHKH 160
CG+ + R NLK H C + F S R +H H
Sbjct: 94 PFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRR--FANS--SDRKKHMH 143
Score = 28.4 bits (64), Expect = 3.7
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRA--------RHKHDLKKH 165
C R++ + L H+ E P+ C + + K+ L H
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 31.3 bits (71), Expect = 0.97
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 17/88 (19%)
Query: 59 IADVATKTLPVIQELLSQRDGKPVGKATLPSPLKAKLSDYENKMKNVRESIRQKR----- 113
+A V +K + I+ +L+ A + K + + + +K
Sbjct: 1 MAPVLSKDVADIESILALNPRTQSHAALHSTLAKKLDKKHWKRNPDKNCFHCEKLENNFD 60
Query: 114 ------------LAQGLTCLQCGRSYCR 129
L + + CL+C + C+
Sbjct: 61 DIKHTTLGERGALREAMRCLKCADAPCQ 88
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein;
1.50A {Streptococcus pyogenes}
Length = 96
Score = 29.0 bits (66), Expect = 0.99
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
R V + L ++E+ L N L ++ +V+++E
Sbjct: 12 RSVNRGDDEISLTKREYDLLNILMTNMNRVMTRE 45
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 28.2 bits (64), Expect = 1.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 10/35 (28%)
Query: 120 CLQCGRSYCRPYNLKRHIQ-------Y---ECGKA 144
C C R++ R +LKRH + Y C +A
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRA 39
Score = 27.8 bits (63), Expect = 1.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 120 CLQCGRSYCRPYNLKRHIQ 138
C C R++ R L RH Q
Sbjct: 33 CGLCNRAFTRRDLLIRHAQ 51
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 1.2
Identities = 27/176 (15%), Positives = 58/176 (32%), Gaps = 15/176 (8%)
Query: 101 KMKNVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKH 160
+ VR + +Q + R + + H C Y A+ +
Sbjct: 850 RGYLVRNKYQMMLREHKSIIIQ---KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 161 DLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNLERNVSHE 220
K A ++ ++ + LE +L + + E E+++L +++
Sbjct: 907 KKLK----IEARSVERYKKLHIGLENKIMQL--------QRKIDEQNKEYKSLLEKMNNL 954
Query: 221 EIRTHKKHEQPRKESSYKETENTQFNSETNDLSKLEEPNKTSSILLAHLQQVQKDL 276
EI + E+ R + + + TN + L+E L Q +K +
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic
ribosome,homology modeling,de novo modeling,ribos
proteins,novel ribosomal proteins; NMR {Saccharomyces
cerevisiae} PDB: 3izs_t
Length = 106
Score = 28.9 bits (64), Expect = 1.4
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 519 NMLIQELIRKKLGLLIQNNQNGGHAEDAPTDLSRKLKSDMEEDEAVKEETEEEED 573
++ + L + L L+ N G A ++ E E +EE +EE D
Sbjct: 43 DIFAKALDGQNLKDLLVNFSAGAAAPAGVAGGVAGGEAGEAEAEKEEEEAKEESD 97
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 28.3 bits (64), Expect = 1.5
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 12/37 (32%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ--------YE---CGKA 144
C +CG+++ R + RH E G +
Sbjct: 49 VCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGPS 84
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 27.5 bits (61), Expect = 1.5
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 119 TCL--QCGRSYCRPYNLKRHIQ 138
CL C +++ R YN++ HIQ
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQ 41
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 28.6 bits (65), Expect = 1.6
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 10/36 (27%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ-------Y---ECGKA 144
C CG+ + Y+L RH Y CG
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLR 44
Score = 27.8 bits (63), Expect = 2.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ 138
C CG+ + RP +L HI+
Sbjct: 67 ICQSCGKGFSRPDHLNGHIK 86
Score = 26.7 bits (60), Expect = 8.3
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 12/38 (31%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ---------Y---ECGKA 144
+C CG + R + H++ Y CGK
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKG 74
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 27.2 bits (61), Expect = 1.9
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 120 CLQCGRSYCRPYNLKRH 136
C +CG ++ +L +H
Sbjct: 15 CKECGMNFSWSCSLFKH 31
>2hwv_A DNA-binding response regulator VICR; essential response regulator,
C-terminal domain, DNA-binding transcription; 1.90A
{Enterococcus faecalis}
Length = 121
Score = 28.4 bits (64), Expect = 2.6
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
V + +EL +EF L YL +V+++E
Sbjct: 33 YMVSKRGEKIELTHREFELLYYLAKHIGQVMTRE 66
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription
regulation; 1.78A {Mycobacterium tuberculosis}
Length = 110
Score = 28.3 bits (64), Expect = 2.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
+V+ + Q V L EF L Y + VLSK
Sbjct: 24 HEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKP 57
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 27.4 bits (61), Expect = 2.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 123 CGRSYCRPYNLKRHIQYECGKAPQFPCLY--CSYRARHKHDLKKH 165
CG++Y + +LK H + G+ P F C + C R +L +H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKP-FSCSWKGCERRFARSDELSRH 68
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 28.2 bits (62), Expect = 2.7
Identities = 13/83 (15%), Positives = 18/83 (21%), Gaps = 32/83 (38%)
Query: 115 AQGLTCLQCGRSYCRPYNLKRHIQ---------YECGKAPQ------------------- 146
A C C +Y L H+ +E
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 147 ----FPCLYCSYRARHKHDLKKH 165
C+YC + DL H
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVH 99
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein;
transcriptional activator, helix-winged-helix, sensory
transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB:
1gxp_A 1qqi_A 2z33_A 3t72_A
Length = 106
Score = 27.9 bits (63), Expect = 2.8
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVELE-KEFRLTNYLPSDRRKVLSKE 359
+V + + +E+ EF+L ++ + +V S+E
Sbjct: 21 HRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSRE 54
>2k4j_A Putative transcriptional regulator; response regulator, acid
resistance, DN binding, phosphoprotein, transcription
regul; NMR {Helicobacter pylori}
Length = 115
Score = 28.3 bits (64), Expect = 2.9
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 305 SSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKELGLT 363
S S N+ + + R+VY + ++L E+ + + L S + V S+E
Sbjct: 10 HGSEEVSEPGDANIFRVDKDS-REVYMHEKKLDLTRAEYEILSLLISKKGYVFSRE---- 64
Query: 364 ERQI--KIW 370
I +
Sbjct: 65 --SIAIESE 71
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 26.3 bits (59), Expect = 3.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 119 TCLQCGRSYCRPYNLKRHI 137
C CG + LK H+
Sbjct: 13 PCEICGTRFRHLQTLKSHL 31
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn-
helix motif, DNA-binding domain, phosphorylation,
transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A
2d1v_A
Length = 120
Score = 28.4 bits (64), Expect = 3.2
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
+ + +EL +EF L +YL +V+++E
Sbjct: 26 YSIKKRGEDIELTHREFELFHYLSKHMGQVMTRE 59
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc
finger, gene regulation; NMR {Agrobacterium tumefaciens}
Length = 87
Score = 27.5 bits (61), Expect = 3.4
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 13/55 (23%)
Query: 104 NVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARH 158
+VR+S++ + CL+CG S+ +LKRH+ P+ YR +
Sbjct: 12 SVRKSVQDDHI----VCLECGGSFK---SLKRHLTTHHSMTPE------EYREKW 53
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged
helix, osmoregulation; 1.95A {Escherichia coli} SCOP:
a.4.6.1 PDB: 1odd_A 2jpb_A
Length = 110
Score = 27.9 bits (63), Expect = 3.6
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
R+++ + + L EF + L S R+ LS++
Sbjct: 21 REMFREDEPMPLTSGEFAVLKALVSHPREPLSRD 54
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 26.0 bits (56), Expect = 4.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 147 FPCLYCSYRARHKHDLKKHVTFKHA 171
+ C YC +R+ +LK H+ KH+
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHS 27
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system
response regulator, effector domain, DNA-binding,
phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Length = 112
Score = 27.5 bits (62), Expect = 4.6
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKEL 360
R V S + + L KE+ L L +VL + L
Sbjct: 18 RTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSL 52
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A
{Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB:
3nns_A*
Length = 220
Score = 28.6 bits (65), Expect = 4.9
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKELGLTERQI--KIW 370
V+ + + L +KEF + +L + KV+++E ++ W
Sbjct: 135 FTVFLKGKRIHLPKKEFEILLFLAENAGKVVTRE------KLLETFW 175
>2hqn_A Putative transcriptional regulator; phosporylation-independent
response regulator, signaling Pro; NMR {Helicobacter
pylori}
Length = 109
Score = 27.5 bits (62), Expect = 5.1
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
++ + VE+ K F + +L R +++SKE
Sbjct: 19 EKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKE 52
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.1 bits (59), Expect = 5.3
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 133 LKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA 172
LK+H++ C + F C +C + R +K HV H +
Sbjct: 51 LKKHME-NCKQEM-FTCHHCGKQLRSLAGMKYHVMANHNS 88
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK,
transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB:
2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Length = 307
Score = 28.7 bits (65), Expect = 5.4
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 8/40 (20%)
Query: 182 EELEVTTKELSPGPKAENRHRFREFLNE--------HRNL 213
V K+L+ ++F E H NL
Sbjct: 53 NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENL 92
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA
binding domain, phosphorylation; 1.58A {Mycobacterium
tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Length = 233
Score = 28.2 bits (64), Expect = 5.5
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKEL 360
R+ + V+L ++EF L L + VLS+
Sbjct: 149 RRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQ 183
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 27.5 bits (62), Expect = 6.3
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ--------Y---ECGKA 144
C C + + Y LK H + +CGK
Sbjct: 9 ECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKC 44
Score = 27.1 bits (61), Expect = 7.9
Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 13/39 (33%)
Query: 119 TCLQCGRSYCRPYNLKRHIQY-------------ECGKA 144
C +CG+ Y R NL H C +
Sbjct: 37 ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET 75
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 28.4 bits (64), Expect = 6.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
PLA GEL +P E L+
Sbjct: 275 PLALGELFNNPAEWHDLIVNRR 296
>2hqr_A Putative transcriptional regulator; phosporylation-independent
response regulator, H. pylori, SY dimer, signaling
protein; NMR {Helicobacter pylori}
Length = 223
Score = 28.2 bits (64), Expect = 6.6
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQN 373
++ + VE+ K F + +L R +++SKE L + IW +
Sbjct: 133 EKIIYKGREVEVKGKPFEVLTHLARHRDQIVSKEQ-LLDA---IWEEP 176
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Length = 410
Score = 28.4 bits (64), Expect = 6.9
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P+ GE ++ +A
Sbjct: 267 PICGGENLAGTRRFHEMLCADA 288
>2gl5_A Putative dehydratase protein; structural genomics, protein
structure initiati nysgxrc; 1.60A {Salmonella
typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Length = 410
Score = 28.4 bits (64), Expect = 7.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P+ATGE + + L+E+ +
Sbjct: 271 PIATGERSYTRWGYRELLEKQS 292
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 28.4 bits (64), Expect = 7.3
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
PLA GE+ S + + L++
Sbjct: 279 PLAVGEVFNSIHDCRELIQNQW 300
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 27.9 bits (63), Expect = 7.3
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 540 GGHAEDAPTDLSRKLKSDMEEDEAVKE------ETEEEEDSA 575
G +E A + L M EA+K + EE+ +A
Sbjct: 171 GSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNA 212
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain
protein; aldolase, structural genomics, biology; 2.90A
{Labrenzia alexandrii}
Length = 404
Score = 28.4 bits (64), Expect = 7.6
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
Query: 436 PFPASQPGEH---------PLATGELHGSPLEMQTLMEENA 467
P P +P + P+ATGE + E ++E A
Sbjct: 242 PIPPEKPEDMAEVARYTSIPVATGERLCTKYEFSRVLETGA 282
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 28.4 bits (64), Expect = 7.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
PLA GE+ + + L+EE
Sbjct: 280 PLAVGEIFAHVWDAKQLIEEQL 301
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 26.8 bits (58), Expect = 7.7
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 132 NLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKHAA 172
LK+H++ C +C + + K L H +H+A
Sbjct: 40 GLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA 80
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A
{Deinococcus radiodurans}
Length = 249
Score = 27.9 bits (63), Expect = 7.8
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKEL 360
R V + + L KEF + L +V S++
Sbjct: 172 RLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQE 206
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 26.6 bits (60), Expect = 8.0
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 8/33 (24%)
Query: 120 CLQCGRSYCRPYNLKRHIQ-----YE---CGKA 144
C C + + + RH+ YE +
Sbjct: 68 CNICAKRFMWRDSFHRHVTSCTKSYEAAKAEQN 100
>2oqr_A Sensory transduction protein REGX3; response regulator,
winged-helix-turn-helix, DNA-binding, 3D swapping, two
component system; 2.03A {Mycobacterium tuberculosis
H37RV}
Length = 230
Score = 27.8 bits (63), Expect = 8.1
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
V + + L KEF L YL + +VL++
Sbjct: 146 HVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRG 179
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 26.2 bits (59), Expect = 8.2
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 12/36 (33%)
Query: 120 CLQCGRSYCRPYNLKRHIQY-----------ECGKA 144
C CG+ + + ++K+H + CGKA
Sbjct: 32 CQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKA 66
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural
genomics, protein structure initiative, PSI, nysgrc;
1.80A {Zymomonas mobilis}
Length = 403
Score = 28.4 bits (64), Expect = 8.2
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
PLA+GE S +E+ +
Sbjct: 262 PLASGERIYSRWGFLPFLEDRS 283
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 26.8 bits (58), Expect = 8.2
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHVTFKH 170
C C + P + H K + CL C + + +H H
Sbjct: 45 CPYCSLRFFSPELKQEHESKCEYK--KLTCLECMRTFKSSFSIWRHQVEVH 93
>2o56_A Putative mandelate racemase; dehydratase, structural genomics,
protein structure initiati 2; 2.00A {Salmonella
typhimurium}
Length = 407
Score = 28.0 bits (63), Expect = 8.3
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
PLA GE + +E +
Sbjct: 268 PLAAGERIYWRWGYRPFLENGS 289
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 27.8 bits (63), Expect = 8.3
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 12/37 (32%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ--------Y---ECGKA 144
C +CG+S+ R +L H Q Y ECGK+
Sbjct: 23 ACPECGKSFSRSDHLAEH-QRTHTGEKPYKCPECGKS 58
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET: EPE
D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A
3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 28.0 bits (63), Expect = 8.5
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
L GEL +P E ++L+
Sbjct: 254 SLGLGELFNNPEEWKSLIANRR 275
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 28.0 bits (63), Expect = 8.9
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
PLA GE+ + + + L++
Sbjct: 273 PLAVGEIFNTIWDAKDLIQNQL 294
>2poz_A Putative dehydratase; octamer, structural genomics, P protein
structure initiative, NEW YORK SGX research center
structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Length = 392
Score = 28.0 bits (63), Expect = 9.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P+A GE + + + E A
Sbjct: 252 PIAVGERVYTRFGFRKIFELQA 273
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger,
ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding
protein, USP; NMR {Homo sapiens}
Length = 126
Score = 27.0 bits (59), Expect = 9.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 120 CLQCGRSYCRPYNLKRHIQ 138
CL+CG C + ++H
Sbjct: 57 CLKCGHQGCGRNSQEQHAL 75
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 26.3 bits (59), Expect = 9.2
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPC--LYCSYRARHKHDLKKH 165
CG++Y + +LK H++ G+ P + C C ++ +L +H
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRTHTGEKP-YHCDWDGCGWKFARSDELTRH 56
>3q9v_A DNA-binding response regulator; response regulator protein, DNA
binding protein; 1.60A {Deinococcus radiodurans}
Length = 133
Score = 27.1 bits (61), Expect = 9.2
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
R V + + L KEF + L +V S++
Sbjct: 50 RLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQ 83
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase,
mandelate racemase subgroup, enzyme function initia EFI;
1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Length = 400
Score = 28.0 bits (63), Expect = 9.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P++ E GS + L+E A
Sbjct: 263 PISASETLGSRWAFRDLLETGA 284
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 28.0 bits (63), Expect = 9.6
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P+ATGE + E L++
Sbjct: 254 PIATGERLTTKYEFHKLLQAGG 275
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 28.0 bits (63), Expect = 9.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P+A GE S + + ++E
Sbjct: 231 PIAAGERMFSRFDFKRVLEAGG 252
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 26.2 bits (59), Expect = 9.7
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 120 CLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
C CG+ + R LK H++ G P + C C Y A L KH
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKP-YKCKTCDYAAADSSSLNKH 55
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics,
isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB:
2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Length = 409
Score = 28.0 bits (63), Expect = 9.8
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 446 PLATGELHGSPLEMQTLMEENA 467
P+++ E E + + NA
Sbjct: 264 PISSCETLFGIREFKPFFDANA 285
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory
system, transcription regulation, phosphorylation, OMPR
family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Length = 238
Score = 27.5 bits (62), Expect = 9.9
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 327 RQVYSSHQIVEL-EKEFRLTNYLPSDRRKVLSKE 359
+V + + + L EF L L R+V +++
Sbjct: 143 HKVTRNGEQISLTPLEFDLLVALARKPRQVFTRD 176
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.364
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,268,442
Number of extensions: 483712
Number of successful extensions: 1536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1481
Number of HSP's successfully gapped: 224
Length of query: 575
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 476
Effective length of database: 3,937,614
Effective search space: 1874304264
Effective search space used: 1874304264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (26.9 bits)