RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4272
(575 letters)
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 82.5 bits (204), Expect = 2e-20
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
RQ Y+ +Q +ELEKEF YL RR ++ L LTERQIKIWFQNRRMK K+ +
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 80.2 bits (198), Expect = 2e-19
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R R ++ QI LEKEF T+Y R+ L+ ++ L E +I++WF NRR K +R
Sbjct: 3 RNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 60
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 79.1 bits (195), Expect = 6e-19
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
+ R Y+ HQ +ELEKEF YL DRR +++ L LTERQ+KIWFQNRRMK+K+ + D
Sbjct: 15 KKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 76.4 bits (188), Expect = 3e-18
Identities = 29/53 (54%), Positives = 34/53 (64%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMK 377
R R +SS Q+ L++EF YL RR+ LS ELGL E QIKIWFQN R K
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 76.4 bits (188), Expect = 3e-18
Identities = 27/54 (50%), Positives = 36/54 (66%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ +S+ Q +ELEK+F YL RK L+K L L+ERQ+K WFQNRR K +R
Sbjct: 4 QVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 75.7 bits (186), Expect = 7e-18
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R YS Q+ ELE+E+ ++ D+R+ +S L+ERQI IWFQNRR+K K+
Sbjct: 3 KKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 73.4 bits (180), Expect = 3e-17
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R+R ++ Q+ LEKEF NY+ RR L+ +L L E IK+WFQNRRMK KR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 73.3 bits (180), Expect = 5e-17
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R V + Q+ L + + ++ L + GL+ R I++WFQN+R K K+
Sbjct: 5 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 72.7 bits (178), Expect = 8e-17
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
+ R ++S Q+ ELE+ F+ YL + R+ L+ + LT Q+KIWFQN R K+KR D
Sbjct: 4 KRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63
Query: 385 MVVE 388
+
Sbjct: 64 KAAQ 67
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 73.1 bits (179), Expect = 1e-16
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 298 QIPKPPPSSSHTYSNQIHKNLLQCNTGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLS 357
++ + PP ++ + R +++ Q+ ELEKEF YL RR ++
Sbjct: 8 KVKRNPPKTAKVSEPGLGSP------SGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIA 61
Query: 358 KELGLTERQIKIWFQNRRMKLKRTHPD 384
L L E Q+KIWFQNRRMK K+ +
Sbjct: 62 ATLELNETQVKIWFQNRRMKQKKRERE 88
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 71.9 bits (176), Expect = 1e-16
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R +++ Q++ LE++FR YL R S L LTE Q+KIWFQNRR K KR
Sbjct: 2 KPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 71.1 bits (174), Expect = 3e-16
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
R R +S+ Q+ ELE+ F T Y R+ L++ LTE +I++WFQNRR +L++ H
Sbjct: 4 RSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 63
Query: 385 M 385
+
Sbjct: 64 V 64
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 69.1 bits (169), Expect = 1e-15
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRR 375
R V++ Q L F+ + + +S++LGL + +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 68.4 bits (167), Expect = 3e-15
Identities = 25/56 (44%), Positives = 33/56 (58%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R ++S QI ELE+ F YL + R LS +L L Q+KIWF+NRR + K
Sbjct: 3 RTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 58
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 67.2 bits (164), Expect = 6e-15
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+ R S LE+ F + S +++EL L + +++WF NRR + KR
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 65.4 bits (159), Expect = 2e-14
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R R ++S Q+ +LE F+ Y R+ ++ LTE ++++WF+NRR K ++
Sbjct: 3 RQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 58
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 65.3 bits (159), Expect = 3e-14
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
+ S LE+ FR L S ++ ++K+ G+T Q+++WF N+RM+ K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 64.4 bits (157), Expect = 4e-14
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 331 SSHQIVELEKEFRLTN-YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
++ LEK F + R + LSK+L R I+ WF+ RR + K +
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 52
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 64.3 bits (156), Expect = 9e-14
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHPD 384
+ R +++ Q ELE+ FR YL + R+ L+ + LT Q+KIWFQN R K KR +
Sbjct: 11 KRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 63.4 bits (154), Expect = 2e-13
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 325 RFRQVYSSHQIVELEK---EFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
R R+ ++ L + Y + ++ L+K+ G+T Q+ WF N+R++ K+
Sbjct: 3 RKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 62
Query: 382 HPDM 385
Sbjct: 63 IGKF 66
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 63.1 bits (153), Expect = 3e-13
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 15/71 (21%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL---------------GLTERQIKI 369
R + + +E F Y +R+ ++ +T ++
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61
Query: 370 WFQNRRMKLKR 380
WF NRR ++KR
Sbjct: 62 WFANRRKEIKR 72
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 62.1 bits (151), Expect = 4e-13
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 330 YSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
++ + LE F YL + + L K L+ QIK W NRR K K
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 62.3 bits (151), Expect = 4e-13
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 325 RFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRT 381
R R + LE F + ++ +LGL + +++WF NRR K KR+
Sbjct: 10 RKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 61.9 bits (150), Expect = 5e-13
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 325 RFRQVYSSHQIVELEKEFRLT-NYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
+ Q+ LE F + +++ E GLTE Q + WF+ R + +R+
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 61.7 bits (150), Expect = 6e-13
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 325 RFRQVYSSHQIVELEKEF---RLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
R V H + Y D +K ++ + LT Q+ WF N R ++ +
Sbjct: 4 NKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 60.5 bits (147), Expect = 1e-12
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 325 RFRQVYSSHQIVELEKEFRLTN-YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLK 379
+ V LEK F Y R K LSK+L + R+I+ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 60.5 bits (146), Expect = 2e-12
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 325 RFRQVYSSHQIVELEKEFRLTN-YLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTHP 383
R R S + L+ Y + LS +L L + I +FQN+R +K + P
Sbjct: 9 RSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGP 68
Query: 384 D 384
Sbjct: 69 S 69
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 58.8 bits (142), Expect = 5e-12
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
R ++ V LEK F S+ +++++L + + I++WF NRR K KR +
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 57.3 bits (138), Expect = 3e-11
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 325 RFRQVYSSHQIVELEKEFR----LTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
RFR +++ Q ++ + E G+ + +KIW N +
Sbjct: 19 RFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 56.3 bits (135), Expect = 7e-11
Identities = 14/72 (19%), Positives = 29/72 (40%)
Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKRTH 382
T + + ++ Q+ L+ F ++ L + L + LT R+I WF ++
Sbjct: 4 TPQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 63
Query: 383 PDMVVEYVKESS 394
M ++ S
Sbjct: 64 EKMEIDESNAGS 75
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 54.4 bits (130), Expect = 3e-10
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 21/77 (27%)
Query: 327 RQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKEL---------------------GLTER 365
R + L + + + R+ L +E +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 366 QIKIWFQNRRMKLKRTH 382
++ WF NRR + H
Sbjct: 61 RVYNWFANRRKEEAFRH 77
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 48.6 bits (115), Expect = 3e-08
Identities = 13/58 (22%), Positives = 24/58 (41%)
Query: 323 TGRFRQVYSSHQIVELEKEFRLTNYLPSDRRKVLSKELGLTERQIKIWFQNRRMKLKR 380
+G + + Q+ L+ F + + + L + GL +I WF + R LK
Sbjct: 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 38.9 bits (90), Expect = 6e-05
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 122 QCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKH 165
QCG+S+ RH + C C + + KH L H
Sbjct: 7 QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
Score = 27.0 bits (59), Expect = 0.96
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 104 NVRESIRQKRLAQGLTCLQCGRSYCRPYNLKRH 136
+ + C CG+ + ++L H
Sbjct: 17 QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 49
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.0 bits (68), Expect = 0.059
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ--------YEC 141
C CG+ + RP +L HI+ ++C
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 26.1 bits (58), Expect = 1.4
Identities = 5/24 (20%), Positives = 7/24 (29%)
Query: 147 FPCLYCSYRARHKHDLKKHVTFKH 170
+ C C L H+ H
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVH 29
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.0 bits (63), Expect = 0.28
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 119 TCLQCGRSYCRPYNLKRHIQ 138
C C + + +K HI
Sbjct: 10 ECYICHARFTQSGTMKMHIL 29
Score = 25.7 bits (57), Expect = 1.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 147 FPCLYCSYRARHKHDLKKHVTFKH 170
+ C C R +K H+ KH
Sbjct: 9 YECYICHARFTQSGTMKMHILQKH 32
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 26.2 bits (58), Expect = 0.84
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 123 CGRSYCRPYNLKRHI 137
C + + + NLK HI
Sbjct: 10 CNKKFAQSTNLKSHI 24
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 26.4 bits (59), Expect = 0.91
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 119 TCLQCGRSYCRPYNLKRH 136
C++CG+++ R L +H
Sbjct: 9 GCVECGKAFSRSSILVQH 26
Score = 23.7 bits (52), Expect = 8.7
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 147 FPCLYCSYRARHKHDLKKH 165
+ C+ C L +H
Sbjct: 8 YGCVECGKAFSRSSILVQH 26
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 26.3 bits (57), Expect = 1.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 147 FPCLYCSYRARHKHDLKKHVTFKHAA 172
+ C YC +R+ +LK H+ KH+
Sbjct: 3 YQCQYCEFRSADSSNLKTHIKTKHSK 28
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 26.0 bits (58), Expect = 1.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 120 CLQCGRSYCRPYNLKRHI 137
C C R++ R +LKRH
Sbjct: 5 CEVCTRAFARQEHLKRHY 22
Score = 23.4 bits (51), Expect = 9.6
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 147 FPCLYCSYRARHKHDLKKH 165
F C C+ + LK+H
Sbjct: 3 FVCEVCTRAFARQEHLKRH 21
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.8 bits (57), Expect = 1.4
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 120 CLQCGRSYCRPYNLKRH 136
C C +++ + L H
Sbjct: 11 CSHCDKTFRQKQLLDMH 27
>d1aj8a_ a.103.1.1 (A:) Citrate synthase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 371
Score = 29.0 bits (64), Expect = 1.4
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 14/75 (18%)
Query: 154 YRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNL 213
YR +L + TF+ YL + +L P F++ L + R L
Sbjct: 27 YRGYSVEELAELSTFEEVVYL-----------LWWGKL---PSLSELENFKKELAKSRGL 72
Query: 214 ERNVSHEEIRTHKKH 228
+ V K
Sbjct: 73 PKEVIEIMEALPKNT 87
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 25.8 bits (57), Expect = 1.5
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 119 TCLQCGRSYCRPYNLKRH 136
C +C + + R +L +H
Sbjct: 4 ACPECPKRFMRSDHLSKH 21
Score = 25.0 bits (55), Expect = 2.4
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 147 FPCLYCSYRARHKHDLKKH 165
F C C R L KH
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 25.6 bits (57), Expect = 1.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 120 CLQCGRSYCRPYNLKRH 136
C C R++ R +L H
Sbjct: 6 CRICMRNFSRSDHLTTH 22
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 25.5 bits (56), Expect = 1.9
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLY 151
CG+S+ +LK H++ + C +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKLHSDTRD-YICEF 36
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 28.5 bits (62), Expect = 1.9
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 463 MEENASKLLLEKLREQTLEKHLRENHLPVP-SVPPLLAGALPPGQVEKLNDLYENERNML 521
E+ A L + LPV V P+L+ L P Q E + L++
Sbjct: 16 FEDGALVLYEPPAISAHDLIKADKEKLPVHVVVDPVLSKVLRPHQREGVKFLWDCVTGRR 75
Query: 522 IQE 524
I+
Sbjct: 76 IEN 78
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 27.4 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 353 RKVLSKELGLTERQI---KIWFQNRRMKLKRTH-PDMV 386
R++L +ELGL E I F+ + P+MV
Sbjct: 257 RELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMV 294
>d1o7xa_ a.103.1.1 (A:) Citrate synthase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 367
Score = 27.5 bits (60), Expect = 4.8
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 14/64 (21%)
Query: 154 YRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNL 213
YR + DL + +++ YL + +L P + + + LNE +
Sbjct: 28 YRGYNIEDLVNYGSYEETIYL-----------MLYGKL---PTKKELNDLKAKLNEEYEV 73
Query: 214 ERNV 217
+ V
Sbjct: 74 PQEV 77
>d1a59a_ a.103.1.1 (A:) Citrate synthase {Antarctic bacterium DS2-3R
[TaxId: 56673]}
Length = 377
Score = 27.5 bits (60), Expect = 5.0
Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 14/75 (18%)
Query: 154 YRARHKHDLKKHVTFKHAAYLDHFQAVQEELEVTTKELSPGPKAENRHRFREFLNEHRNL 213
YR +L +F+ AYL + EL P F F HR L
Sbjct: 30 YRGYPVQELAAKCSFEQVAYL-----------LWNSEL---PNDSELKAFVNFERSHRKL 75
Query: 214 ERNVSHEEIRTHKKH 228
+ NV
Sbjct: 76 DENVKGAIDLLSTAC 90
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 24.3 bits (53), Expect = 5.5
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 120 CLQCGRSYCRPYNLKRH 136
C C ++ N RH
Sbjct: 10 CRICLSAFTTKANCARH 26
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 24.0 bits (52), Expect = 6.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 123 CGRSYCRPYNLKRHIQ 138
C + Y P +L++H++
Sbjct: 10 CTKRYTDPSSLRKHVK 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 23.8 bits (52), Expect = 6.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 119 TCLQCGRSYCRPYNLKRH 136
T CG+ + R L+RH
Sbjct: 6 TWSYCGKRFTRSDELQRH 23
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 23.7 bits (52), Expect = 6.5
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 120 CLQCGRSYCRPYNLKRH 136
CL+CG+++ + L H
Sbjct: 5 CLECGKAFSQNSGLINH 21
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria
(Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Length = 123
Score = 26.1 bits (57), Expect = 6.9
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 6/91 (6%)
Query: 125 RSYCRPYNLKRHIQYECGKAPQF---PCLYCSYRARHKHDLKKHVTFKHAAYLDHFQAVQ 181
+ + ++ + ++ Y R H K + H +HF AV
Sbjct: 31 KHFFADVDMAKQRAHQKAFLTYAFGGTDKYDGRYMREAH---KELVENHGLNGEHFDAVA 87
Query: 182 EELEVTTKELSPGPKAENRHRFREFLNEHRN 212
E+L T KE+ H+
Sbjct: 88 EDLLATLKEMGVPEDLIAEVAAVAGAPAHKR 118
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (51), Expect = 7.5
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 120 CLQCGRSYCRPYNLKRH 136
C +CG+++ LKRH
Sbjct: 5 CAECGKAFVESSKLKRH 21
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.4 bits (50), Expect = 8.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 147 FPCLYCSYRARHKHDLKKHVTFKHA 171
F C YCS+ + +L KH+ H
Sbjct: 3 FKCNYCSFDTKQPSNLSKHMKKFHG 27
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 26.6 bits (58), Expect = 10.0
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 10/83 (12%)
Query: 119 TCLQCGRSYCRPYNLKRHIQYECGKAPQFPCLYCSYRARHKHDLKKHV-----TFKHAA- 172
C + Y L + + + H + + F H
Sbjct: 207 PCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLG 266
Query: 173 ----YLDHFQAVQEELEVTTKEL 191
Y +H +++ +L
Sbjct: 267 NAHVYNNHIDSLKIQLNRIPYPF 289
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.364
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,003,500
Number of extensions: 94608
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 68
Length of query: 575
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 485
Effective length of database: 1,171,896
Effective search space: 568369560
Effective search space used: 568369560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.1 bits)