BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4275
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 169 bits (428), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 84/160 (52%), Positives = 107/160 (66%)
Query: 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFA 61
E+ K+F DL + L C +G PT+IQ IP L D IG A+TGSGKT AFA
Sbjct: 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98
Query: 62 LPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL 121
LPIL E P +FALVLTPTRELA+QI +QF LG + ++ ++I GG+D + Q L
Sbjct: 99 LPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL 158
Query: 122 AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
AKKPHI+IATPGRL DHL+ F+L +K+LV+DEADR+
Sbjct: 159 AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 4/154 (2%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDE-DCIGCAKTGSGKTLAFALPIL 65
+F +L L+ ++ + G + PT+IQ +IP LNDE + + A+TGSGKT +FA+P++
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 66 QKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125
+ E+ GI A++LTPTRELA Q+ D+ L NL+++ I GG + Q K L K
Sbjct: 67 ELVNENN-GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNA 124
Query: 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
+IV+ TPGR+ DH++ T +L +K+ +LDEAD
Sbjct: 125 NIVVGTPGRILDHINRG-TLNLKNVKYFILDEAD 157
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 8/164 (4%)
Query: 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALP 63
PI+ FT L +I G K PT IQK IP + + D + CA+TGSGKT AF LP
Sbjct: 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLP 113
Query: 64 ILQKWCEDPYGIF-----ALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQG 118
IL K EDP+ + ++++PTRELA QI ++ L++ I+ GG Q
Sbjct: 114 ILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQN 173
Query: 119 KELAKKPHIVIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRL 161
+ + + H+VIATPGRL D +D TF + +F+VLDEADR+
Sbjct: 174 ECITRGCHVVIATPGRLLDFVD--RTFITFEDTRFVVLDEADRM 215
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 93/166 (56%), Gaps = 10/166 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
I++F +LKL+P + + PT IQK IP +L D + CA+TGSGKT AF +PI
Sbjct: 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 81
Query: 65 LQKW-CED----PYGIFA----LVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMV 115
+ C+D Y A L+L PTRELA QI + LR ++ GG D
Sbjct: 82 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 141
Query: 116 DQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
Q +E+ H+++ATPGRL D ++ N SL K++VLDEADR+
Sbjct: 142 SQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRM 186
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 93/164 (56%), Gaps = 7/164 (4%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
+ I F+D L+ ++ Q + TEIQK I L +D +G AKTGSGKTLAF +
Sbjct: 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLV 81
Query: 63 PILQ-----KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQ 117
P+L+ +W G+ L+++PTRELAYQ + +GK + +I GG D+ +
Sbjct: 82 PVLEALYRLQWTSTD-GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE 140
Query: 118 GKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+ + +I++ TPGRL H+D +F ++ LVLDEADR+
Sbjct: 141 AERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI 183
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQK 67
F D L P ++ G+ TPT IQ A +P L +D IG A+TG+GKTLAFALPI ++
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 68 WC---EDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
E ALVLTPTRELA Q+ + + +L+V + GG Q + L +
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRG 120
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
V+ATPGR D+L L+R++ VLDEAD +
Sbjct: 121 ADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEM 156
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 87/157 (55%), Gaps = 6/157 (3%)
Query: 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQK 67
F D L P ++ G+ TPT I+ A +P L +D IG A+TG+GKTLAFALPI ++
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 68 WC---EDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
E ALVLTPTRELA Q+ + + +L+V + GG Q + L +
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRG 120
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
V+ATPGR D+L L+R++ VLDEAD +
Sbjct: 121 ADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEM 156
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/175 (36%), Positives = 96/175 (54%), Gaps = 19/175 (10%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
I+SF+D+++ ++ + PT +QK IP + D + CA+TGSGKT AF LPI
Sbjct: 14 IESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPI 73
Query: 65 L-QKWCEDP------------YGI-----FALVLTPTRELAYQIGDQFLVLGKVMNLRVS 106
L Q + + P YG +LVL PTRELA QI ++ +R
Sbjct: 74 LSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPC 133
Query: 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
++ GG D+ Q ++L + H+++ATPGRL D ++ L+ K+LVLDEADR+
Sbjct: 134 VVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRM 187
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 4/159 (2%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQ-KAIIPHVLNDEDCIGCAKTGSGKTLAFALP 63
+ +F D+ L L+R G + P+ IQ +AIIP + D I A++G+GKT FA+
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIP-CIKGYDVIAQAQSGTGKTATFAIS 87
Query: 64 ILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL-A 122
ILQ+ + ALVL PTRELA QI L LG M GG ++ ++ ++L A
Sbjct: 88 ILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQA 147
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+ PHIV+ TPGR+ D L+ S IK VLDEAD +
Sbjct: 148 EAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADEM 185
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ SF D+ L+ L+R G + P+ IQ+ I + D I A++G+GKT FA+ I
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA-K 123
LQ+ D ALVL PTRELA QI + LG M GG ++ + ++L +
Sbjct: 99 LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 158
Query: 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
PHI++ TPGR+ D L+ S IK VLDEAD +
Sbjct: 159 APHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 195
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ SF D+ L+ L+R G + P+ IQ+ I + D I A++G+GKT FA+ I
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 72
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA-K 123
LQ+ D ALVL PTRELA QI + LG M GG ++ + ++L +
Sbjct: 73 LQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQME 132
Query: 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
PHI++ TPGR+ D L+ S IK VLDEAD +
Sbjct: 133 APHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 169
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
FT P++I +T+ PTEIQ+ IIP L E +G ++TG+GKT A+ LPI +
Sbjct: 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXE 64
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIIT----GGMDMVDQGKELA 122
K + + A++ PTRELA QI + L + K I+ GG D ++L
Sbjct: 65 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLN 124
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
+PHIVI TPGR+ D + ++ LV+DEAD
Sbjct: 125 VQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ F D L P L+R G + P+E+Q IP + D + AK+G GKT F L
Sbjct: 6 MSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT 65
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAK 123
LQ+ + LV+ TRELA+QI ++ K M N++V++ GG+ + + +E+ K
Sbjct: 66 LQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS-IKKDEEVLK 124
Query: 124 K--PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
K PHIV+ TPGR+ L + +L IK +LDEAD++
Sbjct: 125 KNCPHIVVGTPGRIL-ALARNKSLNLKHIKHFILDEADKM 163
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 5/157 (3%)
Query: 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQK 67
F D L P L+R G + P+E+Q IP + D + AK+G GKT F L LQ+
Sbjct: 16 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 75
Query: 68 WCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKK-- 124
+ LV+ TRELA+QI ++ K M N++V++ GG+ + + +E+ KK
Sbjct: 76 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS-IKKDEEVLKKNC 134
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
PHIV+ TPGR+ L + +L IK +LDE D++
Sbjct: 135 PHIVVGTPGRILA-LARNKSLNLKHIKHFILDECDKM 170
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 5/157 (3%)
Query: 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQK 67
F D L P L+R G + P+E+Q IP + D + AK+G GKT F L LQ+
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 68 WCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKK-- 124
+ LV+ TRELA+QI ++ K M N++V++ GG+ + + +E+ KK
Sbjct: 70 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS-IKKDEEVLKKNC 128
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
PHIV+ TPGR+ L + +L IK +LDE D++
Sbjct: 129 PHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKM 164
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 5/157 (3%)
Query: 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQK 67
F D L P L+R G + P+E+Q IP + D + AK+G GKT F L LQ+
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 69
Query: 68 WCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKK-- 124
+ LV+ TRELA+QI ++ K M N++V++ GG+ + + +E+ KK
Sbjct: 70 LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLS-IKKDEEVLKKNC 128
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
PHIV+ TPGR+ L + +L IK +LDE D++
Sbjct: 129 PHIVVGTPGRIL-ALARNKSLNLKHIKHFILDECDKM 164
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 10/156 (6%)
Query: 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP 72
+N ++ + +G TEIQ I +L D + AKTGSGKTLAF +P ++ +
Sbjct: 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLR 120
Query: 73 Y----GIFALVLTPTRELAYQIGDQFLVLGKVMNLRV---SIITGGMDMVDQGKELAKKP 125
+ G L+L+PTRELA Q F VL ++M V +I GG + + ++L
Sbjct: 121 FMPRNGTGVLILSPTRELAMQT---FGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGI 177
Query: 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+I++ATPGRL DH+ F ++ LV+DEADR+
Sbjct: 178 NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI 213
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ SF D+ L+ L+R G + P+ IQ+ I + D I A++G+G T FA+ I
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA-K 123
LQ+ D ALVL PTRELA QI + LG M GG ++ + + L +
Sbjct: 74 LQQIELDLXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQME 133
Query: 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
PHI++ TPGR+ D L+ S I VLDEAD +
Sbjct: 134 APHIIVGTPGRVFDMLNR-RYLSPXYIXMFVLDEADEM 170
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 8/147 (5%)
Query: 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP 72
+N + + + +G K TE+Q IP +L ++ + AKTGSGKT A+A+PIL+
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------ 54
Query: 73 YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATP 132
G+ +LV+TPTREL Q+ +G+ M+ +V+ + GGM Q + + IV+ATP
Sbjct: 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATP 113
Query: 133 GRLADHLDTCNTFSLNRIKFLVLDEAD 159
GRL D L + L+ + +++DEAD
Sbjct: 114 GRLLD-LWSKGVIDLSSFEIVIIDEAD 139
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY-----GIFALVLTPT 83
PT IQ P L+ D +G A+TGSGKTL++ LP + P+ G LVL PT
Sbjct: 52 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 111
Query: 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCN 143
RELA Q+ + L+ + I GG Q ++L + I IATPGRL D L+ C
Sbjct: 112 RELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE-CG 170
Query: 144 TFSLNRIKFLVLDEADRL 161
+L R +LVLDEADR+
Sbjct: 171 KTNLRRTTYLVLDEADRM 188
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
D +F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++
Sbjct: 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 93
Query: 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122
+LQ AL+L PTRELA QI L LG MN++ GG ++ + ++L
Sbjct: 94 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
H+V TPGR+ D + + IK LVLDEAD +
Sbjct: 154 YGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEM 191
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY-----GIFALVLTPT 83
PT IQ P L+ D +G A+TGSGKTL++ LP + P+ G LVL PT
Sbjct: 66 PTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 125
Query: 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCN 143
RELA Q+ + L+ + I GG Q ++L + I IATPGRL D L+ C
Sbjct: 126 RELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLE-CG 184
Query: 144 TFSLNRIKFLVLDEADRL 161
+L R +LVLDEADR+
Sbjct: 185 KTNLRRTTYLVLDEADRM 202
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
D +F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++
Sbjct: 35 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 94
Query: 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122
+LQ AL+L PTRELA QI L LG MN++ GG ++ + ++L
Sbjct: 95 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 154
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
H+V TPGR+ D + + IK LVLDEAD +
Sbjct: 155 YGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEM 192
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
D +F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++
Sbjct: 35 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 94
Query: 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122
+LQ AL+L PTRELA QI L LG MN++ GG ++ + ++L
Sbjct: 95 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 154
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
H+V TPGR+ D + + IK LVLDEAD +
Sbjct: 155 YGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEM 192
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62
D +F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++
Sbjct: 13 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSI 72
Query: 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122
+LQ AL+L PTRELA QI L LG MN++ GG ++ + ++L
Sbjct: 73 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 132
Query: 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
H+V TPGR+ D + + IK LVLDEAD +
Sbjct: 133 YGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEM 170
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ F D++L+ L+R G + P+ IQ+ I ++ D + A++G+GKT F++
Sbjct: 20 VYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 79
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
LQ+ AL+L PTRELA QI + L M+++V GG V+ + L +
Sbjct: 80 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RD 138
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
IV+ TPGR+ D++ F ++IK +LDEAD +
Sbjct: 139 AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 174
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ F D++L+ L+R G + P+ IQ+ I ++ D + A++G+GKT F++
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 72
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
LQ+ AL+L PTRELA QI + L M+++V GG V+ + L +
Sbjct: 73 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RD 131
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
IV+ TPGR+ D++ F ++IK +LDEAD +
Sbjct: 132 AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 167
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ F D++L+ L+R G + P+ IQ+ I ++ D + A++G+GKT F++
Sbjct: 21 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 80
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
LQ+ AL+L PTRELA QI + L M+++V GG V+ + L +
Sbjct: 81 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RD 139
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
IV+ TPGR+ D++ F ++IK +LDEAD +
Sbjct: 140 AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 175
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
+F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++ +LQ
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPH 126
AL+L PTRELA Q+ L LG MN++ GG ++ + ++L H
Sbjct: 62 CLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQH 121
Query: 127 IVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+V TPGR+ D + + IK LVLDEAD +
Sbjct: 122 VVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEM 155
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
+F + L L+R G + P+ IQ+ I ++ D I +++G+GKT F++ +LQ
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPH 126
AL+L PTRELA Q+ L LG MN++ GG ++ + ++L H
Sbjct: 62 CLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLDYGQH 121
Query: 127 IVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+V TPGR+ D + + IK LVLDEAD +
Sbjct: 122 VVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEM 155
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 79/155 (50%), Gaps = 1/155 (0%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
+F D L L+ G + P+ IQ+ IP + D + AK G+GKT AF +P L+
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPH 126
K I AL++ PTRELA Q LGK + + TGG ++ D L + H
Sbjct: 82 KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH 141
Query: 127 IVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
I++ TPGR+ D L + L+ ++DEAD++
Sbjct: 142 ILVGTPGRVLD-LASRKVADLSDCSLFIMDEADKM 175
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66
F D L L+ +G + P+ IQ+ IP L+ D + AK G+GK+ A+ +P+L+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 67 KWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKP 125
+ I A+V+ PTRELA Q+ + + K M +V TGG ++ D L
Sbjct: 64 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTV 123
Query: 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
H+VIATPGR+ D L ++ ++ +VLDEAD+L
Sbjct: 124 HVVIATPGRILD-LIKKGVAKVDHVQMIVLDEADKL 158
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 92/168 (54%), Gaps = 7/168 (4%)
Query: 1 MEDPIKSFTDL----KLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGK 56
+ DPI +F L K+N L++ G + PT IQ IP +L+ + + A TGSGK
Sbjct: 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGK 79
Query: 57 TLAFALPILQKWCEDPY-GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMV 115
TLAF++PIL + + G AL+++PTRELA QI + + + + R+ +I
Sbjct: 80 TLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA 139
Query: 116 DQ-GKELAKKPHIVIATPGRLADHLDT-CNTFSLNRIKFLVLDEADRL 161
+ G + +KK I++ TP RL L L +++LV+DE+D+L
Sbjct: 140 KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64
+ F D +L+ L+R G + P+ IQ+ I ++ D + A++G+GKT F++
Sbjct: 20 VYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAA 79
Query: 65 LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124
LQ+ AL L PTRELA QI L +++V GG V+ + L +
Sbjct: 80 LQRIDTSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGL-RD 138
Query: 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
IV+ TPGR+ D++ F ++IK +LDEAD
Sbjct: 139 AQIVVGTPGRVFDNIQR-RRFRTDKIKXFILDEAD 172
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 15 PWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY- 73
P L++ +G+ PT IQ P +L D I A+TG+GKTL++ +P P
Sbjct: 29 PDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS 88
Query: 74 -----GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIV 128
G LVLTPTRELA + + L+ I GG + Q ++++K I+
Sbjct: 89 REQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDII 147
Query: 129 IATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
IATPGRL D L N+ +L I +LV+DEAD++
Sbjct: 148 IATPGRLND-LQMNNSVNLRSITYLVIDEADKM 179
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 79.7 bits (195), Expect = 9e-16, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 17/146 (11%)
Query: 30 TEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWC----EDPYGIFALVLTPT 83
T +Q+ I +L+ D D I AKTG+GKT AF +PI Q + Y + A+++ PT
Sbjct: 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104
Query: 84 RELAYQIGDQFLVLGKVMNLRVSI-------ITGGMDMVDQGKELAK-KPHIVIATPGRL 135
R+LA QI + + K+ ++ + + GG D ++ K +P+IVIATPGRL
Sbjct: 105 RDLALQIEAE---VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 161
Query: 136 ADHLDTCNTFSLNRIKFLVLDEADRL 161
D L+ + + + VLDEADRL
Sbjct: 162 IDVLEKYSNKFFRFVDYKVLDEADRL 187
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 17/146 (11%)
Query: 30 TEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWC----EDPYGIFALVLTPT 83
T +Q+ I +L+ D D I AKTG+GKT AF +PI Q + Y + A+++ PT
Sbjct: 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 104
Query: 84 RELAYQIGDQFLVLGKVMNLRVSI-------ITGGMDMVDQGKELAK-KPHIVIATPGRL 135
R+LA QI + + K+ ++ + + GG D ++ K +P+IVIATPGRL
Sbjct: 105 RDLALQIEAE---VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 161
Query: 136 ADHLDTCNTFSLNRIKFLVLDEADRL 161
D L+ + + + VLDEADRL
Sbjct: 162 IDVLEKYSNKFFRFVDYKVLDEADRL 187
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 17/146 (11%)
Query: 30 TEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWC----EDPYGIFALVLTPT 83
T +Q+ I +L+ D D I AKTG+GKT AF +PI Q + Y + A+++ PT
Sbjct: 96 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155
Query: 84 RELAYQIGDQFLVLGKVMNLRVSI-------ITGGMDMVDQGKELAK-KPHIVIATPGRL 135
R+LA QI + + K+ ++ + + GG D ++ K +P+IVIATPGRL
Sbjct: 156 RDLALQIEAE---VKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 212
Query: 136 ADHLDTCNTFSLNRIKFLVLDEADRL 161
D L+ + + + VLDEADRL
Sbjct: 213 IDVLEKYSNKFFRFVDYKVLDEADRL 238
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFAL 62
+KSF +L+L P L++ +G P++IQ+ +P +L + ++ I +++G+GKT AF L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 63 PILQKWCEDPYGIFA--LVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGK 119
+L + +P + L L+PT ELA Q G +GK L+++ G + +++G+
Sbjct: 84 AMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ 140
Query: 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
++++ IVI TPG + D +IK VLDEAD
Sbjct: 141 KISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFAL 62
+KSF +L+L P L++ +G P++IQ+ +P +L + ++ I +++G+GKT AF L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 63 PILQKWCEDPYGIFA--LVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGK 119
+L + +P + L L+PT ELA Q G +GK L+++ G + +++G+
Sbjct: 151 AMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ 207
Query: 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
++++ IVI TPG + D +IK VLDEAD
Sbjct: 208 KISE--QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFAL 62
+KSF +L+L P L++ +G P++IQ+ +P +L + ++ I +++G+GKT AF L
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 63 PILQKWCEDPYGIF--ALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGK 119
+L + +P + L L+PT ELA Q G +GK L+++ G + +++G+
Sbjct: 121 AMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ 177
Query: 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
+++++ IVI TPG + D +IK VLDEAD
Sbjct: 178 KISEQ--IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 215
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFAL 62
+KSF +L+L P L++ +G P++IQ+ +P +L + ++ I +++G+GKT AF L
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 63 PILQKWCEDPYGIF--ALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGK 119
+L + +P + L L+PT ELA Q G +GK L+++ G + +++G+
Sbjct: 100 AMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ 156
Query: 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
+++++ IVI TPG + D +IK VLDEAD
Sbjct: 157 KISEQ--IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 194
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFAL 62
+KSF +L+L P L++ +G P++IQ+ +P +L + ++ I +++G+GKT AF L
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 63 PILQKWCEDPYGIF--ALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGK 119
+L + +P + L L+PT ELA Q G +GK L+++ G + +++G+
Sbjct: 84 AMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ 140
Query: 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
+++++ IVI TPG + D +IK VLDEAD
Sbjct: 141 KISEQ--IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 91/160 (56%), Gaps = 10/160 (6%)
Query: 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFAL 62
+KSF +L+L P L++ +G P++IQ+ +P +L + ++ I +++G+GKT AF L
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 63 PILQKWCEDPYGIF--ALVLTPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGK 119
+L + +P + L L+PT ELA Q G +GK L+++ G + +++G+
Sbjct: 151 AMLSQV--EPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRG-NKLERGQ 207
Query: 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159
+++++ IVI TPG + D +IK VLDEAD
Sbjct: 208 KISEQ--IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALP 63
KSF +L L P L++ + + P++IQ+ +P +L++ + I +++G+GKT AF+L
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 64 ILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAK 123
+L + + A+ L P+RELA Q + +GK + +I D ++ K++
Sbjct: 82 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKNKQI-- 137
Query: 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+++ TPG + D L L +IK VLDEAD +
Sbjct: 138 NAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNM 174
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALP 63
KSF +L L P L++ + + P++IQ+ +P +L++ + I +++G+GKT AF+L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 64 ILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAK 123
+L + + A+ L P+RELA Q + +GK + +I D ++ K++
Sbjct: 65 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKNKQI-- 120
Query: 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+++ TPG + D L L +IK VLDEAD +
Sbjct: 121 NAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNM 157
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALP 63
KSF +L L P L++ + + P++IQ+ +P +L++ + I +++G+GKT AF+L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 64 ILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAK 123
+L + + A+ L P+RELA Q + +GK + +I D ++ K++
Sbjct: 65 MLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKNKQI-- 120
Query: 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161
+++ TPG + D L L +IK VLDEAD +
Sbjct: 121 NAQVIVGTPGTVLD-LMRRKLMQLQKIKIFVLDEADNM 157
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQK 67
F L L+ ++ + G + P+ +Q IP D I AK+G+GKT F+ L
Sbjct: 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDS 85
Query: 68 WCEDPYGIFALVLTPTRELAYQIGDQFLVLG-KVMNLRVSIITGGMDMVDQGKELAKKPH 126
+ L+L PTRE+A QI +G K+ L + GG + Q K KK H
Sbjct: 86 LVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPL-SQDKTRLKKCH 144
Query: 127 IVIATPGRLAD--HLDTCNTFSLNRIKFLVLDEADRL 161
I + +PGR+ LD N S I+ +LDEAD+L
Sbjct: 145 IAVGSPGRIKQLIELDYLNPGS---IRLFILDEADKL 178
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 31 EIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88
+IQ+ +P +L++ + IG +++G+GKT AFAL +L + A+ L P+RELA
Sbjct: 144 KIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELAR 203
Query: 89 QIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLN 148
QI D +GK ++ + G D V +G ++ IVI TPG + D L
Sbjct: 204 QIMDVVTEMGKYTEVKTAF--GIKDSVPKGAKI--DAQIVIGTPGTVMD-LMKRRQLDAR 258
Query: 149 RIKFLVLDEADRL 161
IK VLDEAD +
Sbjct: 259 DIKVFVLDEADNM 271
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 32 IQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91
I + +I + +C+ TG GKTL + + ++ YG L+L PT+ L Q
Sbjct: 12 IYQEVIYAKCKETNCLIVLPTGLGKTLIAMM--IAEYRLTKYGGKVLMLAPTKPLVLQHA 69
Query: 92 DQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIK 151
+ F L + ++ +TG ++ K A + +++ATP + + L SL +
Sbjct: 70 ESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDL-LAGRISLEDVS 127
Query: 152 FLVLDEADR 160
+V DEA R
Sbjct: 128 LIVFDEAHR 136
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 32 IQKAIIPHVLNDEDCIGC-AKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90
IQ + V N +D + A TGSGKT+ IL+ + G + +TP LA Q+
Sbjct: 930 IQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQV 988
Query: 91 G-DQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGR 134
D + +N +V ++TG +L K +I+I+TP +
Sbjct: 989 YMDWYEKFQDRLNKKVVLLTGE---TSTDLKLLGKGNIIISTPEK 1030
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 25 GVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCE----------DPY 73
G KT IQ + L DE+ + CA TG+GKT + +L++ + D +
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPG 133
I + + P R L ++ F + V+ +TG + KE I++ TP
Sbjct: 136 KI--IYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLC---KEEISATQIIVCTPE 190
Query: 134 R 134
+
Sbjct: 191 K 191
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 32 IQKAIIPHVLNDEDCIGC-AKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90
IQ + V N +D + A TGSGKT+ IL+ + G + +TP LA Q+
Sbjct: 930 IQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQV 988
Query: 91 G-DQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGR 134
D + +N +V ++TG +L K +I+I+TP +
Sbjct: 989 YMDWYEKFQDRLNKKVVLLTGE---TSTDLKLLGKGNIIISTPEK 1030
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 25 GVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCE----------DPY 73
G KT IQ + L DE+ + CA TG+GKT + +L++ + D +
Sbjct: 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF 135
Query: 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPG 133
I + + P R L ++ F + V+ +TG + KE I++ TP
Sbjct: 136 KI--IYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLC---KEEISATQIIVCTPE 190
Query: 134 R 134
+
Sbjct: 191 K 191
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 22 QTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPIL 65
+T G + Q+ II VL+ DC+ TG GK+L + +P L
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPAL 62
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To
Atp-Gamma-S
Length = 523
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 22 QTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPIL 65
+T G + Q+ II VL+ DC+ TG GK+L + +P L
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 24/95 (25%)
Query: 52 TGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGG 111
TG GK+L + LP L C D F LV+ P L + DQ +VL K + + +++
Sbjct: 68 TGGGKSLCYQLPAL---CSDG---FTLVICPLISL---MEDQLMVL-KQLGISATMLNAS 117
Query: 112 ----------MDMVDQGKELAKKPHIVIATPGRLA 136
+MV++ EL ++ TP ++A
Sbjct: 118 SSKEHVKWVHAEMVNKNSELK----LIYVTPEKIA 148
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Query: 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYG-----IFALVLTPT 83
P Q + + ++ I CA TG GKT L + P G +F P
Sbjct: 13 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 72
Query: 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCN 143
E + ++ + RV+ I+G +++ + I+I TP L ++L
Sbjct: 73 YEQQKSVFSKYF---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 129
Query: 144 TFSLNRIKFLVLDEADRLS 162
SL+ ++ DE S
Sbjct: 130 IPSLSIFTLMIFDECHNTS 148
>pdb|4GNK|B Chain B, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|D Chain D, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 1235
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 12 KLNPWLIRQCQTIGVKTPTEIQKAII---PHVLNDEDCIGCAKTG 53
KL L ++CQ + P EI+++++ P L D + CA G
Sbjct: 1168 KLLAQLAQECQEQRARLPQEIRRSLLGEMPEGLGDGPLVACASNG 1212
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Query: 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYG-----IFALVLTPT 83
P Q + + ++ I CA TG GKT L + P G +F P
Sbjct: 14 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 73
Query: 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCN 143
E + ++ + RV+ I+G +++ + I+I TP L ++L
Sbjct: 74 YEQNKSVFSKYF---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 130
Query: 144 TFSLNRIKFLVLDEADRLS 162
SL+ ++ DE S
Sbjct: 131 IPSLSIFTLMIFDECHNTS 149
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 8/139 (5%)
Query: 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYG-----IFALVLTPT 83
P Q + + ++ I CA TG GKT L + P G +F P
Sbjct: 5 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 64
Query: 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCN 143
E + ++ + RV+ I+G +++ + I+I TP L ++L
Sbjct: 65 YEQNKSVFSKYF---ERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 121
Query: 144 TFSLNRIKFLVLDEADRLS 162
SL+ ++ DE S
Sbjct: 122 IPSLSIFTLMIFDECHNTS 140
>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
pdb|1QCN|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Length = 421
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 PYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103
PYG+F+ P + IGDQ L L + +L
Sbjct: 20 PYGVFSTQSNPKPRIGVAIGDQILDLSVIKHL 51
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
pdb|1QQJ|B Chain B, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase
Refined At 1.55 Angstrom Resolution
Length = 419
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 PYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103
PYG+F+ P + IGDQ L L + +L
Sbjct: 18 PYGVFSTQSNPKPRIGVAIGDQILDLSVIKHL 49
>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|1HYO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With
4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid
pdb|2HZY|A Chain A, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
pdb|2HZY|B Chain B, Mouse Fumarylacetoacetate Hydrolase Complexes With A
Transition-State Mimic Of The Complete Substrate
Length = 421
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 PYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103
PYG+F+ P + IGDQ L L + +L
Sbjct: 20 PYGVFSTQSNPKPRIGVAIGDQILDLSVIKHL 51
>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
pdb|1QCO|B Chain B, Crystal Structure Of Fumarylacetoacetate Hydrolase
Complexed With Fumarate And Acetoacetate
Length = 423
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 72 PYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103
PYG+F+ P + IGDQ L L + +L
Sbjct: 20 PYGVFSTQSNPKPRIGVAIGDQILDLSVIKHL 51
>pdb|3L31|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
pdb|3L31|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With The Inhibitor, Amp
Length = 252
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 91 GDQFLVLGKVMNLRVS--IITGGMDMVDQGKELAKKPHI-VIATP 132
GD+ + +++ L+VS I+TGG + ELAKK +I VI TP
Sbjct: 124 GDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTP 168
>pdb|3L2B|A Chain A, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
pdb|3L2B|B Chain B, Crystal Structure Of The Cbs And Drtgg Domains Of The
Regulatory Region Of Clostridium Perfringens
Pyrophosphatase Complexed With Activator, Diadenosine
Tetraphosphate
Length = 245
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 91 GDQFLVLGKVMNLRVS--IITGGMDMVDQGKELAKKPHI-VIATP 132
GD+ + +++ L+VS I+TGG + ELAKK +I VI TP
Sbjct: 127 GDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKKNNITVITTP 171
>pdb|1ESJ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESJ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s)
pdb|1ESQ|A Chain A, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|B Chain B, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate.
pdb|1ESQ|C Chain C, Crystal Structure Of Thiazole Kinase Mutant (C198s) With
Atp And Thiazole Phosphate
Length = 284
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 110 GGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167
GG D++ ++ A+K + VIA G + DT + ++L+ L+ SL+TS+
Sbjct: 158 GGGDIIRLAQQAAQKLNTVIAITGEVDVIADTSHVYTLHNGHKLLTKVTGAGSLLTSV 215
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 26.6 bits (57), Expect = 7.2, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 1 MEDPIKSFTDLKLNPW----LIRQC--QTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGS 54
+++ + SF D + + L+R+ +T+G++ P ++Q ++ + E + KTG
Sbjct: 43 LKEKVNSFEDADEHLFEAFALVREAARRTLGMR-PFDVQ--VMGGIALHEGKVAEMKTGE 99
Query: 55 GKTLAFALPI-LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG--- 110
GKTLA +PI L + + R A +G +L LG LRV +I
Sbjct: 100 GKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLG----LRVGVINSLGK 155
Query: 111 GMDMVDQGKELAKK 124
++V + +LA+K
Sbjct: 156 SYEVVWKNPDLARK 169
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 26.6 bits (57), Expect = 7.2, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 17/134 (12%)
Query: 1 MEDPIKSFTDLKLNPW----LIRQC--QTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGS 54
+++ + SF D + + L+R+ +T+G++ P ++Q ++ + E + KTG
Sbjct: 43 LKEKVNSFEDADEHLFEAFALVREAARRTLGMR-PFDVQ--VMGGIALHEGKVAEMKTGE 99
Query: 55 GKTLAFALPI-LQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG--- 110
GKTLA +PI L + + R A +G +L LG LRV +I
Sbjct: 100 GKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLG----LRVGVINSLGK 155
Query: 111 GMDMVDQGKELAKK 124
++V + +LA+K
Sbjct: 156 SYEVVWKNPDLARK 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,177,440
Number of Sequences: 62578
Number of extensions: 201844
Number of successful extensions: 563
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 71
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)