Query psy4275
Match_columns 182
No_of_seqs 103 out of 1146
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 21:24:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330|consensus 100.0 1.7E-33 3.6E-38 213.6 13.9 173 3-175 58-230 (476)
2 PRK04837 ATP-dependent RNA hel 100.0 2.2E-32 4.7E-37 219.2 19.8 167 6-173 8-181 (423)
3 PTZ00110 helicase; Provisional 100.0 4.6E-32 1E-36 222.5 19.0 169 1-170 125-298 (545)
4 PLN00206 DEAD-box ATP-dependen 100.0 6.9E-32 1.5E-36 220.6 18.9 168 1-169 116-290 (518)
5 PRK11634 ATP-dependent RNA hel 100.0 1.3E-31 2.9E-36 222.1 19.7 172 1-173 1-173 (629)
6 PRK11776 ATP-dependent RNA hel 100.0 2.8E-31 6E-36 214.8 19.6 167 5-172 3-170 (460)
7 PRK04537 ATP-dependent RNA hel 100.0 2.7E-31 5.8E-36 218.8 19.3 166 7-172 10-182 (572)
8 PRK11192 ATP-dependent RNA hel 100.0 5E-31 1.1E-35 212.0 20.4 168 6-174 1-172 (434)
9 PRK10590 ATP-dependent RNA hel 100.0 3.6E-31 7.9E-36 213.7 19.5 163 7-170 2-170 (456)
10 KOG0331|consensus 100.0 3.7E-31 8E-36 210.5 16.3 162 7-169 92-259 (519)
11 COG0513 SrmB Superfamily II DN 100.0 2.3E-30 4.9E-35 211.0 19.0 170 6-176 29-201 (513)
12 cd00268 DEADc DEAD-box helicas 100.0 7.9E-30 1.7E-34 185.7 19.7 165 8-173 1-167 (203)
13 KOG0338|consensus 100.0 3.8E-31 8.3E-36 206.7 11.9 174 5-181 180-356 (691)
14 PRK01297 ATP-dependent RNA hel 100.0 1.2E-29 2.5E-34 206.0 19.6 164 4-168 85-256 (475)
15 KOG0340|consensus 100.0 1.2E-30 2.7E-35 196.1 12.4 172 3-174 4-178 (442)
16 KOG0348|consensus 100.0 3.6E-30 7.8E-35 202.2 15.3 172 6-177 136-315 (708)
17 PTZ00424 helicase 45; Provisio 100.0 1.9E-29 4.2E-34 200.9 19.6 164 4-168 26-189 (401)
18 PRK02362 ski2-like helicase; P 100.0 1.1E-27 2.5E-32 203.0 18.3 165 6-178 1-167 (737)
19 KOG0345|consensus 100.0 1.3E-27 2.8E-32 185.3 16.6 173 6-181 4-186 (567)
20 KOG0339|consensus 100.0 3E-28 6.6E-33 190.6 13.0 166 1-167 218-388 (731)
21 KOG0328|consensus 100.0 2.9E-28 6.3E-33 178.8 10.8 175 3-181 24-198 (400)
22 KOG0343|consensus 100.0 5.8E-28 1.3E-32 190.5 12.1 174 4-181 67-244 (758)
23 KOG0342|consensus 100.0 1.5E-27 3.2E-32 185.8 14.1 172 5-176 81-257 (543)
24 KOG0346|consensus 100.0 8.8E-28 1.9E-32 185.1 12.4 173 6-181 19-199 (569)
25 TIGR03817 DECH_helic helicase/ 99.9 2E-26 4.3E-31 194.6 19.3 174 2-178 8-186 (742)
26 KOG0335|consensus 99.9 1.3E-27 2.7E-32 187.8 10.9 172 2-174 70-252 (482)
27 PRK00254 ski2-like helicase; P 99.9 2.2E-26 4.7E-31 194.8 17.9 160 7-173 2-162 (720)
28 PF00270 DEAD: DEAD/DEAH box h 99.9 3.3E-26 7.1E-31 161.8 15.9 142 30-173 1-143 (169)
29 KOG0333|consensus 99.9 7E-27 1.5E-31 183.5 13.1 178 1-182 240-426 (673)
30 KOG0347|consensus 99.9 4.3E-27 9.4E-32 185.5 12.0 173 4-176 179-367 (731)
31 PRK01172 ski2-like helicase; P 99.9 6.4E-26 1.4E-30 191.0 17.6 161 6-175 1-161 (674)
32 KOG0350|consensus 99.9 2.2E-26 4.8E-31 179.7 12.2 173 5-177 126-323 (620)
33 KOG0326|consensus 99.9 4.5E-27 9.8E-32 175.1 7.1 167 7-174 86-252 (459)
34 KOG0334|consensus 99.9 1E-25 2.2E-30 188.4 13.3 167 2-168 361-534 (997)
35 COG1201 Lhr Lhr-like helicases 99.9 4.5E-25 9.8E-30 184.3 15.0 167 13-180 8-181 (814)
36 PRK13767 ATP-dependent helicas 99.9 2.6E-24 5.7E-29 184.8 15.9 166 13-179 18-203 (876)
37 KOG0341|consensus 99.9 1E-25 2.3E-30 171.8 4.5 174 1-175 165-352 (610)
38 COG1205 Distinct helicase fami 99.9 2.8E-23 6E-28 176.8 16.7 167 13-180 55-226 (851)
39 COG1204 Superfamily II helicas 99.9 2.8E-23 6.1E-28 174.8 14.8 163 10-179 13-177 (766)
40 KOG0336|consensus 99.9 9.5E-24 2.1E-28 162.1 10.3 166 1-168 214-386 (629)
41 TIGR00614 recQ_fam ATP-depende 99.9 6.8E-23 1.5E-27 166.2 14.2 150 22-181 5-161 (470)
42 KOG0329|consensus 99.9 3.4E-23 7.3E-28 150.5 9.8 156 8-164 44-200 (387)
43 KOG0327|consensus 99.9 4.5E-23 9.8E-28 156.8 9.9 172 4-176 24-196 (397)
44 KOG0332|consensus 99.9 3.9E-23 8.4E-28 156.8 8.7 172 5-181 89-262 (477)
45 PLN03137 ATP-dependent DNA hel 99.9 5.4E-22 1.2E-26 169.7 16.6 165 7-181 436-615 (1195)
46 KOG4284|consensus 99.9 4.2E-23 9.2E-28 165.9 9.3 176 2-181 21-197 (980)
47 KOG0337|consensus 99.9 5.5E-23 1.2E-27 158.0 9.1 164 6-170 21-185 (529)
48 TIGR01389 recQ ATP-dependent D 99.9 1.2E-21 2.5E-26 163.1 15.7 151 20-181 4-161 (591)
49 PRK11057 ATP-dependent DNA hel 99.9 1.6E-21 3.5E-26 162.3 16.2 160 11-181 7-173 (607)
50 PRK09401 reverse gyrase; Revie 99.9 5.4E-21 1.2E-25 167.3 18.3 141 17-164 69-216 (1176)
51 KOG0952|consensus 99.9 4.3E-22 9.4E-27 166.7 10.7 153 24-179 106-268 (1230)
52 PRK12899 secA preprotein trans 99.9 3.9E-21 8.4E-26 161.7 15.1 150 10-165 66-231 (970)
53 PRK10917 ATP-dependent DNA hel 99.9 3.8E-21 8.3E-26 161.8 14.8 139 15-163 248-397 (681)
54 TIGR00643 recG ATP-dependent D 99.9 4.9E-21 1.1E-25 160.0 14.6 140 15-164 223-372 (630)
55 COG1202 Superfamily II helicas 99.9 4.4E-21 9.6E-26 152.8 12.9 171 7-181 195-371 (830)
56 PRK14701 reverse gyrase; Provi 99.9 1E-20 2.2E-25 169.0 16.0 143 15-164 66-215 (1638)
57 TIGR00580 mfd transcription-re 99.9 1.3E-20 2.9E-25 161.6 15.7 142 11-162 434-586 (926)
58 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.1E-20 4.5E-25 157.3 16.0 150 18-175 5-195 (844)
59 TIGR01054 rgy reverse gyrase. 99.8 4.1E-20 8.8E-25 162.0 16.2 142 16-164 66-214 (1171)
60 PHA02558 uvsW UvsW helicase; P 99.8 2.8E-20 6.1E-25 151.9 13.0 131 27-170 113-243 (501)
61 PRK10689 transcription-repair 99.8 2.1E-19 4.6E-24 157.1 17.4 138 15-162 588-735 (1147)
62 smart00487 DEXDc DEAD-like hel 99.8 6.5E-19 1.4E-23 126.5 16.8 142 24-168 4-148 (201)
63 PRK09751 putative ATP-dependen 99.8 7.7E-20 1.7E-24 161.5 13.8 134 48-181 1-157 (1490)
64 PRK13766 Hef nuclease; Provisi 99.8 6E-19 1.3E-23 151.0 17.0 139 25-168 12-150 (773)
65 KOG0344|consensus 99.8 7.9E-20 1.7E-24 145.6 9.9 170 1-170 127-310 (593)
66 COG1111 MPH1 ERCC4-like helica 99.8 3.1E-19 6.7E-24 140.5 12.3 142 24-170 11-152 (542)
67 TIGR03714 secA2 accessory Sec 99.8 2.1E-18 4.6E-23 144.0 12.9 135 28-165 68-211 (762)
68 KOG0354|consensus 99.8 3.7E-18 7.9E-23 140.8 13.4 151 14-168 48-198 (746)
69 TIGR03158 cas3_cyano CRISPR-as 99.8 1E-17 2.2E-22 131.6 14.4 130 32-167 1-163 (357)
70 TIGR00963 secA preprotein tran 99.8 4.9E-18 1.1E-22 141.2 13.0 131 28-165 56-192 (745)
71 cd00046 DEXDc DEAD-like helica 99.7 9.7E-17 2.1E-21 109.1 13.8 122 44-168 1-122 (144)
72 PRK09200 preprotein translocas 99.7 4.1E-17 9E-22 137.3 13.9 133 25-165 76-215 (790)
73 COG1061 SSL2 DNA or RNA helica 99.7 2.3E-17 4.9E-22 132.8 11.5 135 27-176 35-173 (442)
74 PRK12898 secA preprotein trans 99.7 7.8E-17 1.7E-21 133.2 14.3 131 28-165 103-258 (656)
75 TIGR00603 rad25 DNA repair hel 99.7 3.5E-17 7.6E-22 136.6 11.6 131 28-169 255-395 (732)
76 PRK05580 primosome assembly pr 99.7 9.9E-17 2.1E-21 135.0 14.3 122 28-163 144-272 (679)
77 PRK13104 secA preprotein trans 99.7 6.6E-17 1.4E-21 136.4 12.4 131 28-165 82-218 (896)
78 COG0514 RecQ Superfamily II DN 99.7 3.8E-17 8.3E-22 132.9 9.3 152 19-181 7-165 (590)
79 PF04851 ResIII: Type III rest 99.7 1.1E-16 2.4E-21 114.2 9.6 132 28-165 3-162 (184)
80 COG4581 Superfamily II RNA hel 99.7 2.6E-16 5.7E-21 134.3 12.5 139 23-173 115-253 (1041)
81 PRK11664 ATP-dependent RNA hel 99.7 2.1E-15 4.5E-20 128.7 14.1 121 30-161 7-128 (812)
82 TIGR01970 DEAH_box_HrpB ATP-de 99.7 5.1E-15 1.1E-19 126.3 16.1 124 31-165 5-130 (819)
83 PHA02653 RNA helicase NPH-II; 99.7 2.1E-15 4.6E-20 126.0 13.3 127 30-165 166-307 (675)
84 COG1200 RecG RecG-like helicas 99.7 1.7E-15 3.7E-20 123.7 12.1 147 11-167 245-402 (677)
85 KOG0951|consensus 99.6 9.9E-16 2.1E-20 130.9 10.2 154 13-171 296-459 (1674)
86 TIGR01407 dinG_rel DnaQ family 99.6 9.5E-15 2.1E-19 126.1 16.3 94 14-111 232-332 (850)
87 TIGR01587 cas3_core CRISPR-ass 99.6 1.5E-15 3.3E-20 119.5 10.0 128 45-176 1-151 (358)
88 PRK12904 preprotein translocas 99.6 4.3E-15 9.4E-20 125.2 12.2 131 28-165 81-217 (830)
89 PRK11448 hsdR type I restricti 99.6 1.3E-14 2.9E-19 127.0 12.7 132 28-162 413-553 (1123)
90 KOG0353|consensus 99.6 1.2E-14 2.5E-19 111.7 10.0 163 9-181 74-249 (695)
91 KOG0352|consensus 99.6 7.3E-15 1.6E-19 114.1 9.0 154 16-181 6-175 (641)
92 COG1197 Mfd Transcription-repa 99.6 1.3E-13 2.8E-18 118.5 16.4 157 11-180 577-743 (1139)
93 COG1110 Reverse gyrase [DNA re 99.6 9.1E-14 2E-18 117.5 15.2 143 17-165 71-219 (1187)
94 PRK13107 preprotein translocas 99.6 1.6E-14 3.4E-19 122.1 9.7 132 28-166 82-219 (908)
95 TIGR00595 priA primosomal prot 99.6 5E-14 1.1E-18 115.1 11.6 103 47-163 1-107 (505)
96 PRK07246 bifunctional ATP-depe 99.6 1.2E-13 2.6E-18 118.4 14.3 130 28-163 245-450 (820)
97 KOG0949|consensus 99.5 2.8E-14 6E-19 119.9 8.7 146 28-176 511-659 (1330)
98 PRK09694 helicase Cas3; Provis 99.5 2.7E-13 5.9E-18 116.2 13.2 137 26-163 284-453 (878)
99 KOG0947|consensus 99.5 1.5E-13 3.3E-18 115.3 11.0 129 28-171 297-425 (1248)
100 TIGR03117 cas_csf4 CRISPR-asso 99.5 6E-13 1.3E-17 110.4 14.1 73 37-110 10-85 (636)
101 KOG0351|consensus 99.5 1E-13 2.2E-18 118.8 8.3 156 16-181 251-419 (941)
102 PRK08074 bifunctional ATP-depe 99.5 1.2E-12 2.6E-17 114.0 14.1 83 27-111 256-345 (928)
103 TIGR00348 hsdR type I site-spe 99.5 6.5E-13 1.4E-17 112.0 11.6 130 29-165 239-381 (667)
104 COG4096 HsdR Type I site-speci 99.5 6.9E-13 1.5E-17 110.3 11.0 130 28-167 165-303 (875)
105 KOG0349|consensus 99.4 2.2E-13 4.7E-18 106.3 7.3 99 75-174 287-388 (725)
106 PF00176 SNF2_N: SNF2 family N 99.4 9.5E-13 2.1E-17 100.9 10.8 124 43-170 25-155 (299)
107 PRK13103 secA preprotein trans 99.4 1.4E-12 3.1E-17 110.5 12.1 131 28-165 82-218 (913)
108 smart00488 DEXDc2 DEAD-like he 99.4 4.7E-12 1E-16 96.9 12.7 70 28-97 8-84 (289)
109 smart00489 DEXDc3 DEAD-like he 99.4 4.7E-12 1E-16 96.9 12.7 70 28-97 8-84 (289)
110 KOG0948|consensus 99.4 6.6E-13 1.4E-17 109.3 8.0 124 28-166 129-252 (1041)
111 PLN03142 Probable chromatin-re 99.4 5.6E-12 1.2E-16 109.4 13.4 134 28-167 169-309 (1033)
112 PF07517 SecA_DEAD: SecA DEAD- 99.4 2.6E-11 5.6E-16 91.0 14.5 131 28-165 77-213 (266)
113 COG1198 PriA Primosomal protei 99.4 1.7E-12 3.6E-17 108.8 8.4 120 28-161 198-325 (730)
114 PRK12906 secA preprotein trans 99.4 8.2E-12 1.8E-16 105.3 11.1 131 28-165 80-216 (796)
115 KOG0951|consensus 99.4 1.3E-12 2.7E-17 112.4 6.3 128 28-168 1143-1272(1674)
116 KOG0385|consensus 99.3 1E-11 2.3E-16 102.5 11.0 134 28-167 167-307 (971)
117 PRK12326 preprotein translocas 99.3 1.8E-11 3.9E-16 101.8 11.9 131 28-165 78-214 (764)
118 PRK11131 ATP-dependent RNA hel 99.3 4.2E-11 9.1E-16 105.5 14.0 123 30-166 76-204 (1294)
119 PRK11747 dinG ATP-dependent DN 99.3 3.8E-11 8.2E-16 101.8 13.0 73 27-101 24-106 (697)
120 KOG0950|consensus 99.3 1.1E-11 2.4E-16 104.4 9.4 153 17-175 212-367 (1008)
121 PRK04914 ATP-dependent helicas 99.3 1.5E-11 3.2E-16 106.4 9.8 131 28-163 152-286 (956)
122 PF07652 Flavi_DEAD: Flaviviru 99.3 4.2E-11 9.1E-16 81.1 8.2 109 41-164 2-110 (148)
123 KOG0389|consensus 99.2 1.1E-11 2.4E-16 102.6 6.0 142 28-173 399-548 (941)
124 KOG0391|consensus 99.2 2.2E-11 4.8E-16 104.4 7.6 141 28-174 615-762 (1958)
125 TIGR01967 DEAH_box_HrpA ATP-de 99.2 2.4E-10 5.3E-15 101.0 13.0 127 30-166 69-197 (1283)
126 PRK12902 secA preprotein trans 99.2 3.4E-10 7.3E-15 96.0 12.6 131 28-165 85-221 (939)
127 TIGR00604 rad3 DNA repair heli 99.2 2E-10 4.3E-15 97.9 11.1 74 24-97 6-83 (705)
128 COG1643 HrpA HrpA-like helicas 99.2 7.4E-10 1.6E-14 94.5 13.5 139 28-180 50-189 (845)
129 KOG0387|consensus 99.1 6.1E-10 1.3E-14 92.5 11.6 137 28-170 205-358 (923)
130 CHL00122 secA preprotein trans 99.1 2.9E-10 6.2E-15 96.4 8.9 131 28-165 76-212 (870)
131 KOG1123|consensus 99.1 8.7E-11 1.9E-15 93.4 5.3 135 28-173 302-446 (776)
132 COG1199 DinG Rad3-related DNA 99.1 5.4E-10 1.2E-14 94.6 9.6 73 22-96 9-85 (654)
133 KOG0920|consensus 99.1 2.7E-09 5.9E-14 91.2 13.6 142 27-180 172-314 (924)
134 PF13086 AAA_11: AAA domain; P 99.1 1.6E-09 3.4E-14 80.0 10.8 68 29-96 2-75 (236)
135 COG4098 comFA Superfamily II D 99.1 1.5E-09 3.3E-14 82.8 10.4 115 28-162 97-215 (441)
136 KOG0952|consensus 99.1 7.1E-11 1.5E-15 100.4 3.2 133 28-164 927-1061(1230)
137 KOG0922|consensus 99.0 4.5E-09 9.8E-14 86.1 12.2 139 28-180 51-190 (674)
138 KOG1802|consensus 99.0 2.1E-09 4.5E-14 88.1 8.6 86 19-110 401-486 (935)
139 KOG0390|consensus 99.0 1.3E-08 2.8E-13 85.8 12.5 135 28-166 238-393 (776)
140 PRK12903 secA preprotein trans 99.0 8.7E-09 1.9E-13 87.4 11.3 131 28-165 78-214 (925)
141 KOG4439|consensus 98.9 1.5E-09 3.2E-14 89.3 6.2 144 28-173 325-487 (901)
142 COG1203 CRISPR-associated heli 98.9 6E-09 1.3E-13 89.1 9.6 148 28-175 195-364 (733)
143 COG4889 Predicted helicase [Ge 98.9 9.3E-09 2E-13 86.9 9.2 141 16-163 149-318 (1518)
144 PRK14873 primosome assembly pr 98.9 8.1E-09 1.7E-13 86.9 8.9 102 47-161 164-269 (665)
145 KOG0384|consensus 98.9 5.9E-09 1.3E-13 90.2 7.9 135 27-168 369-516 (1373)
146 KOG0388|consensus 98.9 7E-09 1.5E-13 85.8 7.9 142 28-178 567-724 (1185)
147 KOG1000|consensus 98.9 4.3E-08 9.3E-13 78.2 11.8 136 26-173 196-332 (689)
148 COG0610 Type I site-specific r 98.9 1.6E-08 3.5E-13 88.5 10.1 118 43-165 273-392 (962)
149 KOG1002|consensus 98.9 4.5E-08 9.8E-13 78.2 11.5 131 28-166 184-333 (791)
150 PRK15483 type III restriction- 98.8 3.6E-08 7.8E-13 85.1 11.2 119 44-163 60-215 (986)
151 KOG0392|consensus 98.8 1.7E-08 3.6E-13 87.6 8.5 133 28-166 975-1117(1549)
152 KOG0925|consensus 98.8 2.9E-08 6.3E-13 79.1 7.7 162 4-178 23-184 (699)
153 PF13604 AAA_30: AAA domain; P 98.8 1.8E-08 3.9E-13 73.0 6.0 63 28-93 1-65 (196)
154 PRK12900 secA preprotein trans 98.7 2E-08 4.2E-13 86.4 6.3 128 29-163 139-272 (1025)
155 KOG0923|consensus 98.7 7.4E-08 1.6E-12 79.3 9.2 141 26-179 263-404 (902)
156 KOG0386|consensus 98.7 9.3E-09 2E-13 87.5 4.1 134 27-166 393-532 (1157)
157 KOG0926|consensus 98.7 1.6E-07 3.4E-12 78.9 10.6 120 34-161 262-384 (1172)
158 PF02562 PhoH: PhoH-like prote 98.7 4E-08 8.7E-13 71.2 5.5 59 26-85 2-60 (205)
159 TIGR00376 DNA helicase, putati 98.7 4.4E-07 9.4E-12 76.6 12.2 67 27-96 156-223 (637)
160 PRK12901 secA preprotein trans 98.6 7.6E-08 1.7E-12 83.0 6.3 130 29-163 168-304 (1112)
161 PF09848 DUF2075: Uncharacteri 98.6 3.2E-07 6.9E-12 72.3 8.6 96 45-164 3-98 (352)
162 KOG0924|consensus 98.5 1.2E-06 2.6E-11 72.6 10.8 137 28-178 356-493 (1042)
163 KOG1803|consensus 98.5 4.4E-07 9.5E-12 74.1 7.1 64 27-93 184-248 (649)
164 TIGR01447 recD exodeoxyribonuc 98.5 1.1E-06 2.4E-11 73.3 9.0 68 30-97 147-216 (586)
165 PF13245 AAA_19: Part of AAA d 98.4 1.6E-06 3.6E-11 52.9 7.3 51 43-94 10-62 (76)
166 PRK10536 hypothetical protein; 98.4 3.7E-06 8E-11 62.9 10.4 60 25-85 56-115 (262)
167 COG0553 HepA Superfamily II DN 98.4 1.8E-06 4E-11 75.2 9.2 145 27-173 337-496 (866)
168 PRK10875 recD exonuclease V su 98.4 7.6E-06 1.7E-10 68.7 12.2 71 29-99 153-224 (615)
169 TIGR01448 recD_rel helicase, p 98.4 3.8E-06 8.2E-11 72.0 10.6 64 27-91 322-385 (720)
170 PF00580 UvrD-helicase: UvrD/R 98.3 2.9E-06 6.3E-11 65.3 7.5 70 29-100 1-71 (315)
171 KOG1805|consensus 98.3 5.2E-06 1.1E-10 71.2 9.4 127 27-165 668-812 (1100)
172 PF05970 PIF1: PIF1-like helic 98.2 2.5E-06 5.5E-11 67.5 5.9 122 29-178 2-131 (364)
173 PF12340 DUF3638: Protein of u 98.2 4.7E-05 1E-09 56.0 11.8 153 7-164 4-187 (229)
174 PF13872 AAA_34: P-loop contai 98.2 4E-05 8.7E-10 58.4 11.6 147 28-181 37-209 (303)
175 COG3587 Restriction endonuclea 98.2 8.1E-06 1.8E-10 69.3 8.3 117 43-164 74-220 (985)
176 KOG1132|consensus 98.2 1.8E-05 4E-10 67.3 10.2 39 28-66 21-63 (945)
177 KOG1131|consensus 98.2 2.4E-05 5.3E-10 63.3 10.3 73 24-96 12-89 (755)
178 PF02399 Herpes_ori_bp: Origin 98.1 1.2E-05 2.7E-10 68.3 8.5 111 43-167 49-160 (824)
179 COG0653 SecA Preprotein transl 98.1 1.3E-05 2.7E-10 68.5 8.3 131 29-164 79-215 (822)
180 TIGR02768 TraA_Ti Ti-type conj 98.1 6.8E-05 1.5E-09 64.6 12.6 62 27-91 351-413 (744)
181 KOG0989|consensus 98.0 1E-05 2.2E-10 61.4 5.6 27 43-69 57-83 (346)
182 PRK13889 conjugal transfer rel 97.9 0.00015 3.2E-09 64.0 11.1 61 27-90 345-406 (988)
183 KOG1001|consensus 97.9 9.4E-05 2E-09 62.7 8.9 116 44-169 153-274 (674)
184 PRK13826 Dtr system oriT relax 97.9 0.00033 7.2E-09 62.3 12.3 75 13-91 367-442 (1102)
185 TIGR02562 cas3_yersinia CRISPR 97.8 0.0002 4.3E-09 62.9 10.5 77 18-95 398-482 (1110)
186 cd00009 AAA The AAA+ (ATPases 97.8 0.00019 4.2E-09 48.4 8.6 21 43-63 19-39 (151)
187 PF13401 AAA_22: AAA domain; P 97.8 3.2E-05 6.9E-10 51.9 4.4 26 42-67 3-28 (131)
188 PRK11054 helD DNA helicase IV; 97.8 0.00014 3.1E-09 62.0 9.2 83 25-109 193-276 (684)
189 COG1875 NYN ribonuclease and A 97.8 4.1E-05 8.9E-10 59.6 5.1 64 24-87 224-289 (436)
190 COG2805 PilT Tfp pilus assembl 97.8 0.00016 3.4E-09 55.1 7.8 52 1-71 101-152 (353)
191 PRK10919 ATP-dependent DNA hel 97.7 9.6E-05 2.1E-09 63.1 7.1 69 28-98 2-71 (672)
192 COG0556 UvrB Helicase subunit 97.7 0.00012 2.5E-09 59.7 6.8 71 28-104 12-87 (663)
193 PHA02533 17 large terminase pr 97.7 0.0004 8.7E-09 57.7 9.8 123 28-163 59-183 (534)
194 smart00382 AAA ATPases associa 97.7 7.8E-05 1.7E-09 49.9 4.7 41 43-86 2-42 (148)
195 PRK04296 thymidine kinase; Pro 97.7 0.00016 3.4E-09 52.2 6.4 36 44-82 3-38 (190)
196 KOG0953|consensus 97.6 8.3E-05 1.8E-09 60.7 4.5 98 46-165 194-291 (700)
197 TIGR01075 uvrD DNA helicase II 97.6 0.00023 5E-09 61.3 7.3 71 27-99 3-74 (715)
198 PRK06526 transposase; Provisio 97.6 0.0004 8.6E-09 52.4 7.7 40 38-80 93-132 (254)
199 KOG1015|consensus 97.6 0.00052 1.1E-08 59.5 9.0 138 29-167 680-839 (1567)
200 PRK12723 flagellar biosynthesi 97.6 0.00064 1.4E-08 54.2 9.1 61 44-107 175-238 (388)
201 cd01120 RecA-like_NTPases RecA 97.6 0.0019 4E-08 44.6 10.4 40 46-88 2-41 (165)
202 PRK14722 flhF flagellar biosyn 97.6 0.00092 2E-08 53.0 9.7 91 43-135 137-227 (374)
203 PF05621 TniB: Bacterial TniB 97.5 0.0007 1.5E-08 51.8 8.5 110 44-179 62-175 (302)
204 PRK11773 uvrD DNA-dependent he 97.5 0.00035 7.6E-09 60.3 7.4 71 27-99 8-79 (721)
205 TIGR01074 rep ATP-dependent DN 97.4 0.00052 1.1E-08 58.7 7.5 69 28-98 1-70 (664)
206 cd01122 GP4d_helicase GP4d_hel 97.4 0.0011 2.5E-08 50.2 8.6 66 15-82 2-67 (271)
207 PRK08181 transposase; Validate 97.4 0.003 6.5E-08 48.0 10.4 57 29-89 88-148 (269)
208 COG1419 FlhF Flagellar GTP-bin 97.4 0.00094 2E-08 53.0 7.8 89 43-134 203-292 (407)
209 PRK14956 DNA polymerase III su 97.4 0.00053 1.2E-08 55.9 6.1 24 46-69 43-66 (484)
210 PRK11331 5-methylcytosine-spec 97.3 0.0018 3.9E-08 52.5 8.4 34 29-62 180-213 (459)
211 TIGR01073 pcrA ATP-dependent D 97.3 0.00097 2.1E-08 57.7 7.2 71 27-99 3-74 (726)
212 PF14617 CMS1: U3-containing 9 97.3 0.0011 2.4E-08 49.7 6.6 85 73-159 125-211 (252)
213 KOG0298|consensus 97.2 0.0015 3.3E-08 58.1 7.8 94 43-138 374-482 (1394)
214 KOG0991|consensus 97.2 0.00053 1.2E-08 50.6 4.4 24 44-67 49-72 (333)
215 PRK14712 conjugal transfer nic 97.2 0.0022 4.8E-08 59.2 8.5 63 28-91 835-901 (1623)
216 TIGR02760 TraI_TIGR conjugativ 97.1 0.0043 9.3E-08 58.9 10.3 63 28-93 429-493 (1960)
217 PHA03333 putative ATPase subun 97.1 0.0078 1.7E-07 51.1 10.8 57 42-100 186-242 (752)
218 TIGR02785 addA_Gpos recombinat 97.1 0.0018 3.9E-08 59.0 7.7 123 29-160 2-126 (1232)
219 TIGR01547 phage_term_2 phage t 97.1 0.0019 4.1E-08 51.8 7.0 111 45-164 3-116 (396)
220 PF05127 Helicase_RecD: Helica 97.1 0.00012 2.6E-09 51.9 0.0 102 47-161 1-102 (177)
221 PRK00411 cdc6 cell division co 97.1 0.0051 1.1E-07 49.2 9.3 36 44-80 56-91 (394)
222 PRK14723 flhF flagellar biosyn 97.1 0.0028 6E-08 54.6 8.0 90 43-134 185-274 (767)
223 PF03354 Terminase_1: Phage Te 97.1 0.0033 7.1E-08 51.8 8.3 70 31-100 1-80 (477)
224 TIGR00631 uvrb excinuclease AB 97.1 0.003 6.5E-08 53.9 8.2 67 28-100 9-80 (655)
225 COG3973 Superfamily I DNA and 97.1 0.0018 4E-08 53.7 6.6 71 28-99 212-285 (747)
226 PRK13833 conjugal transfer pro 97.1 0.0017 3.7E-08 50.6 6.2 63 21-86 123-186 (323)
227 PRK05298 excinuclease ABC subu 97.1 0.0041 8.9E-08 53.1 8.8 67 28-100 12-83 (652)
228 PRK14964 DNA polymerase III su 97.1 0.0031 6.7E-08 51.9 7.8 24 44-67 36-59 (491)
229 PRK06921 hypothetical protein; 97.1 0.018 3.8E-07 43.8 11.4 38 43-82 117-154 (266)
230 PRK13709 conjugal transfer nic 97.0 0.0043 9.3E-08 57.9 9.3 64 27-91 966-1033(1747)
231 TIGR02524 dot_icm_DotB Dot/Icm 97.0 0.0022 4.7E-08 50.8 6.5 26 42-68 133-158 (358)
232 TIGR02525 plasmid_TraJ plasmid 97.0 0.0026 5.7E-08 50.5 6.9 27 42-69 148-174 (372)
233 TIGR02782 TrbB_P P-type conjug 97.0 0.0048 1E-07 47.7 8.1 57 29-86 117-174 (299)
234 KOG4150|consensus 97.0 0.00038 8.3E-09 57.3 1.9 161 17-179 275-442 (1034)
235 PRK14087 dnaA chromosomal repl 97.0 0.0082 1.8E-07 49.1 9.5 45 44-90 142-186 (450)
236 PRK07952 DNA replication prote 97.0 0.015 3.3E-07 43.6 10.1 34 44-80 100-133 (244)
237 KOG0333|consensus 97.0 0.019 4.1E-07 47.2 11.1 70 74-154 517-590 (673)
238 PRK06995 flhF flagellar biosyn 96.9 0.013 2.7E-07 48.2 10.2 91 43-135 256-346 (484)
239 PRK05707 DNA polymerase III su 96.9 0.0026 5.7E-08 49.8 6.0 44 28-71 3-50 (328)
240 PF05876 Terminase_GpA: Phage 96.9 0.0023 4.9E-08 53.7 5.7 127 28-163 16-148 (557)
241 TIGR03499 FlhF flagellar biosy 96.9 0.0028 6.1E-08 48.6 5.7 38 43-81 194-231 (282)
242 TIGR02881 spore_V_K stage V sp 96.8 0.011 2.3E-07 44.8 8.6 21 43-63 42-62 (261)
243 PF05496 RuvB_N: Holliday junc 96.8 0.0079 1.7E-07 44.3 7.4 23 44-66 51-73 (233)
244 PRK12727 flagellar biosynthesi 96.8 0.0064 1.4E-07 50.3 7.6 124 7-134 300-439 (559)
245 PRK14960 DNA polymerase III su 96.8 0.0048 1E-07 52.3 7.0 25 45-69 39-63 (702)
246 CHL00181 cbbX CbbX; Provisiona 96.8 0.014 3.1E-07 44.8 9.2 23 43-65 59-81 (287)
247 KOG2340|consensus 96.8 0.012 2.6E-07 48.3 8.8 142 27-168 215-434 (698)
248 PRK14949 DNA polymerase III su 96.8 0.0078 1.7E-07 52.7 8.3 23 46-68 41-63 (944)
249 PRK05703 flhF flagellar biosyn 96.8 0.0057 1.2E-07 49.6 7.2 38 43-82 221-259 (424)
250 PLN03025 replication factor C 96.8 0.017 3.7E-07 45.1 9.6 23 44-66 35-57 (319)
251 PRK13894 conjugal transfer ATP 96.8 0.0061 1.3E-07 47.6 7.0 64 20-86 126-190 (319)
252 COG1444 Predicted P-loop ATPas 96.8 0.014 3E-07 50.1 9.4 129 18-161 204-335 (758)
253 PRK14962 DNA polymerase III su 96.7 0.0057 1.2E-07 50.2 6.8 23 45-67 38-60 (472)
254 PRK14958 DNA polymerase III su 96.7 0.0082 1.8E-07 49.8 7.7 25 45-69 40-64 (509)
255 KOG0921|consensus 96.7 0.0076 1.6E-07 52.3 7.5 124 33-165 383-509 (1282)
256 COG3421 Uncharacterized protei 96.7 0.0019 4.1E-08 53.6 3.8 119 48-168 2-131 (812)
257 PRK14961 DNA polymerase III su 96.7 0.0092 2E-07 47.4 7.7 22 46-67 41-62 (363)
258 PRK08903 DnaA regulatory inact 96.7 0.01 2.3E-07 43.8 7.5 23 43-65 42-64 (227)
259 COG4962 CpaF Flp pilus assembl 96.7 0.0046 1E-07 48.2 5.7 59 25-87 154-213 (355)
260 PRK00149 dnaA chromosomal repl 96.7 0.017 3.7E-07 47.3 9.4 38 44-82 149-186 (450)
261 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.013 2.8E-07 43.1 8.0 24 43-66 38-61 (226)
262 PRK07764 DNA polymerase III su 96.7 0.0072 1.6E-07 52.9 7.4 25 46-70 40-64 (824)
263 TIGR00362 DnaA chromosomal rep 96.7 0.02 4.4E-07 46.1 9.5 38 44-82 137-174 (405)
264 PRK06645 DNA polymerase III su 96.6 0.012 2.6E-07 48.8 7.9 26 44-69 44-69 (507)
265 TIGR02760 TraI_TIGR conjugativ 96.6 0.0089 1.9E-07 56.9 7.8 63 27-91 1018-1085(1960)
266 PRK07003 DNA polymerase III su 96.6 0.01 2.2E-07 51.1 7.4 25 45-69 40-64 (830)
267 PRK04195 replication factor C 96.6 0.038 8.2E-07 45.7 10.7 23 43-65 39-61 (482)
268 PRK05563 DNA polymerase III su 96.6 0.013 2.7E-07 49.3 7.9 26 44-69 39-64 (559)
269 TIGR02928 orc1/cdc6 family rep 96.6 0.017 3.7E-07 45.7 8.4 24 44-68 41-64 (365)
270 PRK12726 flagellar biosynthesi 96.6 0.017 3.6E-07 46.1 8.1 86 43-135 206-297 (407)
271 COG1474 CDC6 Cdc6-related prot 96.6 0.03 6.4E-07 44.6 9.6 26 44-70 43-68 (366)
272 TIGR01425 SRP54_euk signal rec 96.5 0.031 6.7E-07 45.3 9.7 87 45-135 102-194 (429)
273 TIGR03881 KaiC_arch_4 KaiC dom 96.5 0.032 7E-07 41.2 9.3 39 41-82 18-56 (229)
274 PRK12323 DNA polymerase III su 96.5 0.0095 2.1E-07 50.5 6.9 25 45-69 40-64 (700)
275 PRK11823 DNA repair protein Ra 96.5 0.026 5.6E-07 46.2 9.1 51 43-97 80-130 (446)
276 PRK08691 DNA polymerase III su 96.5 0.014 3E-07 49.9 7.7 25 45-69 40-64 (709)
277 cd00984 DnaB_C DnaB helicase C 96.5 0.034 7.4E-07 41.3 9.1 42 40-83 10-51 (242)
278 PF00308 Bac_DnaA: Bacterial d 96.5 0.021 4.5E-07 42.1 7.7 37 45-82 36-72 (219)
279 PF00448 SRP54: SRP54-type pro 96.5 0.011 2.3E-07 42.9 6.0 57 46-108 4-62 (196)
280 PF03237 Terminase_6: Terminas 96.4 0.063 1.4E-06 42.1 10.8 106 47-165 1-113 (384)
281 PHA03368 DNA packaging termina 96.4 0.033 7.2E-07 47.3 9.4 116 43-170 254-373 (738)
282 PRK14721 flhF flagellar biosyn 96.4 0.015 3.4E-07 46.9 7.3 91 43-135 191-281 (420)
283 TIGR01420 pilT_fam pilus retra 96.4 0.017 3.6E-07 45.6 7.4 39 43-83 122-160 (343)
284 PRK14951 DNA polymerase III su 96.4 0.01 2.2E-07 50.3 6.4 24 46-69 41-64 (618)
285 PRK11889 flhF flagellar biosyn 96.4 0.016 3.5E-07 46.4 7.2 85 44-135 242-332 (436)
286 PTZ00112 origin recognition co 96.4 0.043 9.3E-07 48.3 10.0 21 47-68 785-805 (1164)
287 PRK08727 hypothetical protein; 96.4 0.012 2.6E-07 43.8 6.1 35 44-81 42-76 (233)
288 COG4626 Phage terminase-like p 96.4 0.019 4.1E-07 47.5 7.5 73 28-100 61-144 (546)
289 PF03796 DnaB_C: DnaB-like hel 96.3 0.022 4.8E-07 43.0 7.5 117 40-164 16-145 (259)
290 PRK14088 dnaA chromosomal repl 96.3 0.045 9.7E-07 44.7 9.7 38 44-82 131-168 (440)
291 COG2804 PulE Type II secretory 96.3 0.0097 2.1E-07 48.6 5.7 42 29-71 242-285 (500)
292 KOG1016|consensus 96.3 0.022 4.8E-07 49.0 7.8 124 13-138 247-388 (1387)
293 PF01695 IstB_IS21: IstB-like 96.3 0.0064 1.4E-07 43.4 4.2 47 40-90 44-90 (178)
294 PRK14952 DNA polymerase III su 96.3 0.015 3.3E-07 49.0 6.9 24 46-69 38-61 (584)
295 cd01121 Sms Sms (bacterial rad 96.3 0.042 9E-07 43.9 9.1 50 43-96 82-131 (372)
296 COG1435 Tdk Thymidine kinase [ 96.3 0.073 1.6E-06 38.3 9.3 104 43-178 4-107 (201)
297 PRK05973 replicative DNA helic 96.3 0.014 3E-07 43.6 5.9 83 10-97 22-114 (237)
298 COG1197 Mfd Transcription-repa 96.3 0.063 1.4E-06 48.1 10.7 123 32-163 731-887 (1139)
299 TIGR00959 ffh signal recogniti 96.3 0.048 1.1E-06 44.3 9.4 86 45-135 101-194 (428)
300 PRK08116 hypothetical protein; 96.3 0.033 7.1E-07 42.4 8.0 41 44-88 115-155 (268)
301 PRK14963 DNA polymerase III su 96.2 0.029 6.2E-07 46.6 8.1 22 46-67 39-60 (504)
302 PRK07994 DNA polymerase III su 96.2 0.015 3.2E-07 49.5 6.5 24 46-69 41-64 (647)
303 PF13177 DNA_pol3_delta2: DNA 96.2 0.039 8.3E-07 38.7 7.7 28 45-72 21-48 (162)
304 PRK13851 type IV secretion sys 96.2 0.011 2.4E-07 46.6 5.3 31 39-70 158-188 (344)
305 PRK00771 signal recognition pa 96.2 0.033 7.1E-07 45.4 8.0 87 45-135 97-187 (437)
306 TIGR02237 recomb_radB DNA repa 96.2 0.062 1.4E-06 39.0 9.0 40 42-84 11-50 (209)
307 PRK14965 DNA polymerase III su 96.2 0.015 3.3E-07 49.0 6.3 24 45-68 40-63 (576)
308 PRK08451 DNA polymerase III su 96.2 0.029 6.4E-07 46.7 7.8 25 46-70 39-63 (535)
309 PRK14974 cell division protein 96.2 0.067 1.5E-06 42.1 9.4 55 45-106 142-199 (336)
310 KOG0331|consensus 96.2 0.038 8.2E-07 45.6 8.2 72 73-155 340-415 (519)
311 COG0470 HolB ATPase involved i 96.2 0.04 8.6E-07 42.7 8.2 29 43-71 23-52 (325)
312 PRK14957 DNA polymerase III su 96.1 0.019 4.1E-07 48.0 6.6 23 46-68 41-63 (546)
313 PF02456 Adeno_IVa2: Adenoviru 96.1 0.012 2.6E-07 45.3 4.9 41 46-87 90-130 (369)
314 PRK14959 DNA polymerase III su 96.1 0.013 2.9E-07 49.5 5.7 26 44-69 39-64 (624)
315 TIGR00678 holB DNA polymerase 96.1 0.033 7.2E-07 39.9 7.1 26 44-69 15-40 (188)
316 PRK14955 DNA polymerase III su 96.1 0.025 5.4E-07 45.5 7.1 25 45-69 40-64 (397)
317 PF12846 AAA_10: AAA-like doma 96.1 0.012 2.5E-07 45.0 5.0 25 43-67 1-25 (304)
318 KOG1133|consensus 96.1 0.0053 1.1E-07 51.7 3.2 43 28-70 15-61 (821)
319 PRK06647 DNA polymerase III su 96.1 0.021 4.5E-07 48.0 6.7 25 45-69 40-64 (563)
320 PRK08769 DNA polymerase III su 96.1 0.032 7E-07 43.5 7.4 45 27-71 3-54 (319)
321 COG1484 DnaC DNA replication p 96.1 0.023 4.9E-07 43.0 6.3 50 42-95 104-153 (254)
322 cd01124 KaiC KaiC is a circadi 96.1 0.017 3.8E-07 41.0 5.5 48 46-97 2-49 (187)
323 PRK09111 DNA polymerase III su 96.0 0.024 5.1E-07 48.0 6.8 27 44-70 47-73 (598)
324 PRK10689 transcription-repair 96.0 0.04 8.6E-07 50.1 8.5 80 74-162 809-892 (1147)
325 PRK14086 dnaA chromosomal repl 96.0 0.084 1.8E-06 44.7 9.8 38 44-82 315-352 (617)
326 TIGR00580 mfd transcription-re 96.0 0.039 8.4E-07 49.1 8.1 79 74-161 660-742 (926)
327 TIGR03877 thermo_KaiC_1 KaiC d 96.0 0.015 3.3E-07 43.3 4.9 52 41-96 19-70 (237)
328 PRK00080 ruvB Holliday junctio 96.0 0.034 7.3E-07 43.6 7.1 20 44-63 52-71 (328)
329 PRK14969 DNA polymerase III su 96.0 0.029 6.3E-07 46.8 7.0 24 46-69 41-64 (527)
330 PF06733 DEAD_2: DEAD_2; Inte 96.0 0.004 8.6E-08 44.2 1.6 45 119-164 114-160 (174)
331 PHA02544 44 clamp loader, smal 95.9 0.076 1.7E-06 41.2 8.8 19 45-63 44-63 (316)
332 PRK05896 DNA polymerase III su 95.9 0.024 5.3E-07 47.7 6.2 25 45-69 40-64 (605)
333 PRK14954 DNA polymerase III su 95.9 0.028 6.2E-07 47.7 6.5 25 45-69 40-64 (620)
334 PRK14950 DNA polymerase III su 95.9 0.041 8.9E-07 46.6 7.5 23 45-67 40-62 (585)
335 TIGR00064 ftsY signal recognit 95.8 0.1 2.2E-06 39.8 9.0 36 44-82 73-108 (272)
336 PTZ00293 thymidine kinase; Pro 95.8 0.045 9.8E-07 40.0 6.7 38 43-83 4-41 (211)
337 PRK13900 type IV secretion sys 95.8 0.025 5.4E-07 44.4 5.6 30 40-70 157-186 (332)
338 COG5008 PilU Tfp pilus assembl 95.8 0.019 4.1E-07 43.5 4.6 45 3-66 105-149 (375)
339 KOG2373|consensus 95.8 0.0033 7.1E-08 49.1 0.7 29 42-70 272-300 (514)
340 cd00544 CobU Adenosylcobinamid 95.8 0.091 2E-06 37.2 7.9 46 46-97 2-47 (169)
341 PRK10436 hypothetical protein; 95.7 0.026 5.6E-07 46.3 5.7 39 30-69 203-243 (462)
342 PRK08939 primosomal protein Dn 95.7 0.055 1.2E-06 42.0 7.3 35 43-80 156-190 (306)
343 PRK10867 signal recognition pa 95.7 0.19 4E-06 41.0 10.5 86 45-135 102-195 (433)
344 PRK06964 DNA polymerase III su 95.7 0.041 8.8E-07 43.4 6.6 43 29-71 2-49 (342)
345 PRK13764 ATPase; Provisional 95.7 0.029 6.3E-07 47.4 6.0 27 43-70 257-283 (602)
346 cd01129 PulE-GspE PulE/GspE Th 95.7 0.035 7.5E-07 42.2 6.0 39 30-69 65-105 (264)
347 TIGR02688 conserved hypothetic 95.7 0.077 1.7E-06 42.9 8.0 53 14-66 173-232 (449)
348 PRK07993 DNA polymerase III su 95.7 0.024 5.2E-07 44.6 5.2 44 28-71 2-52 (334)
349 cd01394 radB RadB. The archaea 95.7 0.057 1.2E-06 39.5 7.0 38 42-82 18-55 (218)
350 COG0210 UvrD Superfamily I DNA 95.7 0.04 8.7E-07 47.2 7.0 70 28-99 2-72 (655)
351 COG1702 PhoH Phosphate starvat 95.7 0.061 1.3E-06 42.0 7.2 56 26-82 126-181 (348)
352 cd01393 recA_like RecA is a b 95.7 0.036 7.7E-07 40.8 5.8 45 41-85 17-64 (226)
353 TIGR02397 dnaX_nterm DNA polym 95.6 0.073 1.6E-06 41.9 7.8 22 45-66 38-59 (355)
354 PRK06835 DNA replication prote 95.6 0.032 6.9E-07 43.8 5.4 44 43-90 183-226 (329)
355 TIGR03600 phage_DnaB phage rep 95.5 0.16 3.5E-06 41.2 9.6 124 33-163 184-319 (421)
356 PF00437 T2SE: Type II/IV secr 95.5 0.029 6.3E-07 42.6 5.0 44 40-86 124-167 (270)
357 PRK14948 DNA polymerase III su 95.5 0.091 2E-06 44.8 8.4 26 44-69 39-64 (620)
358 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.028 6E-07 42.6 4.9 40 41-83 34-73 (259)
359 cd03115 SRP The signal recogni 95.5 0.27 5.9E-06 34.5 9.7 84 46-135 3-94 (173)
360 PRK00440 rfc replication facto 95.5 0.17 3.6E-06 39.2 9.3 21 44-64 39-59 (319)
361 PRK05800 cobU adenosylcobinami 95.5 0.085 1.8E-06 37.3 7.0 45 45-95 3-47 (170)
362 PRK07471 DNA polymerase III su 95.5 0.038 8.2E-07 44.0 5.6 27 45-71 43-69 (365)
363 KOG0341|consensus 95.4 0.18 3.8E-06 40.3 8.9 138 3-154 333-494 (610)
364 TIGR00763 lon ATP-dependent pr 95.4 0.11 2.3E-06 45.6 8.6 20 43-62 347-366 (775)
365 KOG0739|consensus 95.4 0.15 3.2E-06 39.5 8.1 39 45-90 168-206 (439)
366 PHA00012 I assembly protein 95.4 0.21 4.6E-06 39.0 9.1 25 46-70 4-28 (361)
367 TIGR02538 type_IV_pilB type IV 95.3 0.043 9.3E-07 46.3 5.8 38 30-68 301-340 (564)
368 cd01130 VirB11-like_ATPase Typ 95.3 0.034 7.3E-07 39.8 4.5 39 28-67 9-48 (186)
369 PRK13700 conjugal transfer pro 95.3 0.022 4.9E-07 48.7 4.0 70 14-88 156-227 (732)
370 PF02572 CobA_CobO_BtuR: ATP:c 95.3 0.23 5.1E-06 35.2 8.5 119 46-177 6-124 (172)
371 PRK13341 recombination factor 95.3 0.053 1.1E-06 47.0 6.2 21 44-64 53-73 (725)
372 PRK14953 DNA polymerase III su 95.2 0.096 2.1E-06 43.3 7.4 22 46-67 41-62 (486)
373 PF05729 NACHT: NACHT domain 95.2 0.12 2.5E-06 35.6 7.0 26 45-70 2-27 (166)
374 PHA00350 putative assembly pro 95.2 0.13 2.9E-06 41.3 7.9 25 46-70 4-28 (399)
375 TIGR00767 rho transcription te 95.2 0.16 3.5E-06 40.9 8.3 28 42-70 167-194 (415)
376 PRK12422 chromosomal replicati 95.2 0.11 2.3E-06 42.6 7.6 36 44-82 142-177 (445)
377 PRK08533 flagellar accessory p 95.2 0.051 1.1E-06 40.4 5.3 42 40-84 21-62 (230)
378 COG0513 SrmB Superfamily II DN 95.2 0.18 3.8E-06 42.1 8.9 81 63-154 262-346 (513)
379 PF06745 KaiC: KaiC; InterPro 95.2 0.047 1E-06 40.2 5.1 54 41-97 17-70 (226)
380 TIGR02640 gas_vesic_GvpN gas v 95.2 0.048 1E-06 41.3 5.2 30 35-64 13-42 (262)
381 TIGR02533 type_II_gspE general 95.2 0.056 1.2E-06 44.7 5.8 40 29-69 226-267 (486)
382 PRK09183 transposase/IS protei 95.2 0.042 9E-07 41.6 4.8 46 40-89 99-144 (259)
383 PRK04328 hypothetical protein; 95.2 0.045 9.7E-07 41.2 4.9 52 41-96 21-72 (249)
384 PRK04537 ATP-dependent RNA hel 95.1 0.2 4.3E-06 42.4 9.2 73 74-157 257-333 (572)
385 PF01443 Viral_helicase1: Vira 95.1 0.016 3.5E-07 42.7 2.5 17 46-62 1-17 (234)
386 PF13481 AAA_25: AAA domain; P 95.1 0.082 1.8E-06 37.8 6.1 57 42-99 31-94 (193)
387 PRK12724 flagellar biosynthesi 95.1 0.076 1.7E-06 43.0 6.2 35 45-81 225-259 (432)
388 TIGR00416 sms DNA repair prote 95.1 0.27 5.9E-06 40.4 9.5 50 43-96 94-143 (454)
389 PF03266 NTPase_1: NTPase; In 95.1 0.035 7.6E-07 39.2 3.9 25 45-70 1-25 (168)
390 PF06862 DUF1253: Protein of u 95.1 0.15 3.3E-06 41.4 7.9 50 124-173 131-185 (442)
391 COG1221 PspF Transcriptional r 95.1 0.11 2.4E-06 41.8 7.0 60 42-110 100-160 (403)
392 cd01126 TraG_VirD4 The TraG/Tr 95.1 0.024 5.3E-07 45.3 3.4 56 45-109 1-56 (384)
393 PRK05748 replicative DNA helic 95.0 0.38 8.3E-06 39.4 10.3 121 36-163 196-328 (448)
394 PRK08699 DNA polymerase III su 95.0 0.23 4.9E-06 39.0 8.6 39 30-68 3-46 (325)
395 PF10412 TrwB_AAD_bind: Type I 95.0 0.041 8.8E-07 44.2 4.5 43 41-86 13-55 (386)
396 cd01123 Rad51_DMC1_radA Rad51_ 95.0 0.065 1.4E-06 39.6 5.4 44 41-84 17-63 (235)
397 PRK09376 rho transcription ter 95.0 0.14 3.1E-06 41.1 7.4 27 43-70 169-195 (416)
398 cd01128 rho_factor Transcripti 94.9 0.13 2.7E-06 38.8 6.8 30 40-70 13-42 (249)
399 COG0468 RecA RecA/RadA recombi 94.9 0.065 1.4E-06 41.0 5.2 43 44-89 61-103 (279)
400 COG0467 RAD55 RecA-superfamily 94.9 0.043 9.3E-07 41.5 4.2 54 40-97 20-73 (260)
401 PF08423 Rad51: Rad51; InterP 94.9 0.054 1.2E-06 41.0 4.6 44 43-86 38-84 (256)
402 PF02534 T4SS-DNA_transf: Type 94.9 0.042 9.2E-07 45.1 4.4 57 44-109 45-101 (469)
403 TIGR03743 SXT_TraD conjugative 94.9 0.12 2.6E-06 44.2 7.1 53 43-98 176-230 (634)
404 PRK12377 putative replication 94.8 0.12 2.6E-06 38.9 6.4 45 43-91 101-145 (248)
405 COG0552 FtsY Signal recognitio 94.8 0.22 4.7E-06 38.9 7.8 87 45-135 141-233 (340)
406 TIGR00665 DnaB replicative DNA 94.8 0.35 7.6E-06 39.4 9.5 117 39-163 191-319 (434)
407 TIGR00596 rad1 DNA repair prot 94.8 0.045 9.8E-07 47.9 4.4 55 120-175 3-57 (814)
408 PRK06731 flhF flagellar biosyn 94.7 0.26 5.7E-06 37.6 8.0 23 44-66 76-98 (270)
409 TIGR03880 KaiC_arch_3 KaiC dom 94.7 0.098 2.1E-06 38.5 5.5 52 42-97 15-66 (224)
410 COG1074 RecB ATP-dependent exo 94.6 0.075 1.6E-06 48.5 5.6 54 43-96 16-71 (1139)
411 PRK11192 ATP-dependent RNA hel 94.6 0.29 6.3E-06 39.8 8.6 76 68-154 239-318 (434)
412 KOG0058|consensus 94.6 0.054 1.2E-06 46.2 4.3 29 41-71 492-520 (716)
413 PRK10590 ATP-dependent RNA hel 94.6 0.28 6.1E-06 40.3 8.5 70 74-154 245-318 (456)
414 PF01580 FtsK_SpoIIIE: FtsK/Sp 94.5 0.084 1.8E-06 38.3 4.9 43 40-82 35-78 (205)
415 TIGR02784 addA_alphas double-s 94.5 0.13 2.8E-06 47.0 7.0 56 43-98 10-65 (1141)
416 COG1132 MdlB ABC-type multidru 94.5 0.098 2.1E-06 44.1 5.8 36 41-79 353-388 (567)
417 PRK09112 DNA polymerase III su 94.5 0.29 6.4E-06 38.8 8.1 25 45-69 47-71 (351)
418 TIGR03819 heli_sec_ATPase heli 94.5 0.14 3.1E-06 40.3 6.4 47 19-68 155-202 (340)
419 KOG2228|consensus 94.5 0.53 1.1E-05 37.1 9.1 24 43-66 49-72 (408)
420 PRK08006 replicative DNA helic 94.5 0.86 1.9E-05 37.7 11.0 121 37-163 218-350 (471)
421 PRK06904 replicative DNA helic 94.5 0.66 1.4E-05 38.4 10.3 121 38-164 216-349 (472)
422 PF03969 AFG1_ATPase: AFG1-lik 94.4 0.56 1.2E-05 37.4 9.6 49 43-97 62-110 (362)
423 PRK10263 DNA translocase FtsK; 94.4 0.14 3E-06 46.7 6.7 41 43-83 1010-1051(1355)
424 TIGR02012 tigrfam_recA protein 94.4 0.11 2.4E-06 40.6 5.4 47 40-89 52-98 (321)
425 PRK13897 type IV secretion sys 94.4 0.072 1.6E-06 45.2 4.7 59 43-110 158-216 (606)
426 PRK08506 replicative DNA helic 94.4 0.51 1.1E-05 39.0 9.6 119 38-164 187-317 (472)
427 PF14516 AAA_35: AAA-like doma 94.4 0.29 6.3E-06 38.4 7.9 49 30-81 17-66 (331)
428 TIGR02880 cbbX_cfxQ probable R 94.4 0.11 2.4E-06 39.9 5.4 20 43-62 58-77 (284)
429 TIGR02788 VirB11 P-type DNA tr 94.3 0.1 2.2E-06 40.5 5.2 28 40-68 141-168 (308)
430 PF01935 DUF87: Domain of unkn 94.3 0.084 1.8E-06 38.9 4.6 40 43-84 23-62 (229)
431 PF01637 Arch_ATPase: Archaeal 94.3 0.014 3E-07 42.7 0.3 25 43-68 20-44 (234)
432 TIGR02655 circ_KaiC circadian 94.3 0.085 1.9E-06 43.6 4.9 54 41-97 19-72 (484)
433 TIGR03754 conj_TOL_TraD conjug 94.3 0.21 4.6E-06 42.6 7.2 54 43-99 180-235 (643)
434 PRK04837 ATP-dependent RNA hel 94.2 0.46 9.9E-06 38.6 9.0 72 74-156 255-330 (423)
435 COG1219 ClpX ATP-dependent pro 94.2 0.043 9.3E-07 42.6 2.8 56 6-61 44-115 (408)
436 PRK07004 replicative DNA helic 94.2 0.47 1E-05 39.1 9.0 122 36-164 206-339 (460)
437 KOG1807|consensus 94.2 0.094 2E-06 45.2 5.0 67 28-94 378-447 (1025)
438 PF00004 AAA: ATPase family as 94.2 0.2 4.4E-06 33.1 5.9 21 46-66 1-21 (132)
439 PRK14971 DNA polymerase III su 94.2 0.33 7.1E-06 41.5 8.2 24 45-68 41-64 (614)
440 PRK06305 DNA polymerase III su 94.2 0.23 5E-06 40.7 7.1 26 44-69 40-65 (451)
441 COG1618 Predicted nucleotide k 94.1 0.19 4.2E-06 35.2 5.6 54 44-109 6-59 (179)
442 cd01131 PilT Pilus retraction 94.1 0.11 2.5E-06 37.5 4.8 24 45-69 3-26 (198)
443 cd00983 recA RecA is a bacter 94.1 0.13 2.8E-06 40.3 5.3 46 41-89 53-98 (325)
444 PF12775 AAA_7: P-loop contain 94.1 0.055 1.2E-06 41.3 3.1 24 40-63 30-53 (272)
445 PF02283 CobU: Cobinamide kina 94.0 1 2.3E-05 31.7 9.3 84 46-135 1-84 (167)
446 TIGR02868 CydC thiol reductant 94.0 0.069 1.5E-06 44.6 3.9 28 41-70 359-386 (529)
447 PRK06871 DNA polymerase III su 94.0 0.66 1.4E-05 36.4 9.0 84 29-112 3-117 (325)
448 COG0630 VirB11 Type IV secreto 93.9 0.11 2.4E-06 40.5 4.7 42 28-70 127-169 (312)
449 PRK10416 signal recognition pa 93.9 0.59 1.3E-05 36.6 8.6 37 43-82 114-150 (318)
450 TIGR02655 circ_KaiC circadian 93.9 0.11 2.5E-06 42.9 4.9 52 42-97 262-313 (484)
451 PRK13695 putative NTPase; Prov 93.9 1.2 2.5E-05 31.4 9.5 18 45-62 2-19 (174)
452 COG2812 DnaX DNA polymerase II 93.9 0.088 1.9E-06 43.6 4.2 24 44-67 39-62 (515)
453 PRK06090 DNA polymerase III su 93.9 0.77 1.7E-05 35.9 9.2 86 28-113 3-119 (319)
454 PRK08058 DNA polymerase III su 93.9 0.3 6.5E-06 38.3 7.0 26 45-70 30-55 (329)
455 CHL00176 ftsH cell division pr 93.9 0.49 1.1E-05 40.6 8.7 20 44-63 217-236 (638)
456 PRK06067 flagellar accessory p 93.9 0.18 3.8E-06 37.4 5.5 52 41-96 23-74 (234)
457 COG3972 Superfamily I DNA and 93.7 0.075 1.6E-06 43.6 3.4 72 25-98 159-230 (660)
458 PF05894 Podovirus_Gp16: Podov 93.7 0.95 2.1E-05 35.1 9.1 101 47-159 21-122 (333)
459 COG1222 RPT1 ATP-dependent 26S 93.7 0.13 2.8E-06 40.6 4.6 55 3-60 145-202 (406)
460 PRK09354 recA recombinase A; P 93.7 0.17 3.6E-06 40.0 5.3 43 43-88 60-102 (349)
461 PRK08840 replicative DNA helic 93.7 1.4 3.1E-05 36.4 10.8 124 33-163 207-343 (464)
462 PRK09361 radB DNA repair and r 93.6 0.13 2.8E-06 37.9 4.4 40 41-83 21-60 (225)
463 cd01127 TrwB Bacterial conjuga 93.6 0.09 1.9E-06 42.6 3.8 23 38-60 37-59 (410)
464 PTZ00110 helicase; Provisional 93.6 0.8 1.7E-05 38.6 9.5 71 74-155 377-451 (545)
465 PRK05595 replicative DNA helic 93.6 0.43 9.4E-06 39.1 7.7 124 34-164 192-326 (444)
466 COG3598 RepA RecA-family ATPas 93.6 0.38 8.3E-06 37.6 6.8 135 33-180 78-231 (402)
467 PF00158 Sigma54_activat: Sigm 93.5 0.35 7.6E-06 34.1 6.3 40 42-83 21-60 (168)
468 COG1200 RecG RecG-like helicas 93.5 0.31 6.7E-06 41.5 6.8 80 74-162 473-564 (677)
469 PRK11776 ATP-dependent RNA hel 93.5 0.61 1.3E-05 38.3 8.5 73 74-157 242-318 (460)
470 PRK09165 replicative DNA helic 93.5 1.6 3.4E-05 36.4 10.9 120 40-164 214-356 (497)
471 PF13555 AAA_29: P-loop contai 93.5 0.077 1.7E-06 30.9 2.4 18 43-60 23-40 (62)
472 KOG1806|consensus 93.5 0.15 3.2E-06 45.3 5.0 68 29-97 739-806 (1320)
473 TIGR00609 recB exodeoxyribonuc 93.4 0.23 4.9E-06 45.3 6.3 53 44-96 10-64 (1087)
474 KOG0344|consensus 93.4 1.5 3.2E-05 36.8 10.2 98 51-159 365-466 (593)
475 PRK13850 type IV secretion sys 93.3 0.15 3.2E-06 43.9 4.7 57 44-109 140-196 (670)
476 PRK12608 transcription termina 93.3 1.3 2.8E-05 35.5 9.6 36 34-70 121-159 (380)
477 PF07728 AAA_5: AAA domain (dy 93.2 0.077 1.7E-06 35.8 2.5 19 45-63 1-19 (139)
478 PHA00149 DNA encapsidation pro 93.0 1.9 4.1E-05 33.2 9.7 103 46-160 20-122 (331)
479 PRK08760 replicative DNA helic 93.0 0.98 2.1E-05 37.4 9.0 118 39-163 225-353 (476)
480 TIGR00643 recG ATP-dependent D 93.0 0.61 1.3E-05 40.0 8.0 78 74-160 448-537 (630)
481 PRK13822 conjugal transfer cou 93.0 0.19 4.2E-06 43.0 4.9 59 43-110 224-282 (641)
482 KOG0328|consensus 93.0 0.33 7.2E-06 37.2 5.6 68 75-154 267-339 (400)
483 TIGR00602 rad24 checkpoint pro 92.9 0.63 1.4E-05 39.9 7.9 20 44-63 111-130 (637)
484 PRK11634 ATP-dependent RNA hel 92.9 0.65 1.4E-05 39.8 8.0 71 74-155 245-319 (629)
485 TIGR00614 recQ_fam ATP-depende 92.9 0.86 1.9E-05 37.6 8.5 72 74-156 226-301 (470)
486 PRK01297 ATP-dependent RNA hel 92.9 0.94 2E-05 37.4 8.7 71 74-155 335-409 (475)
487 COG2256 MGS1 ATPase related to 92.9 0.76 1.7E-05 36.9 7.7 22 44-65 49-70 (436)
488 PF13207 AAA_17: AAA domain; P 92.9 0.11 2.3E-06 34.1 2.7 20 46-65 2-21 (121)
489 PF06309 Torsin: Torsin; Inte 92.8 0.63 1.4E-05 31.2 6.2 54 44-97 52-112 (127)
490 PHA03372 DNA packaging termina 92.8 1.9 4.2E-05 36.6 10.2 59 43-102 202-261 (668)
491 COG0466 Lon ATP-dependent Lon 92.8 0.67 1.5E-05 39.9 7.7 53 120-176 391-444 (782)
492 PLN03186 DNA repair protein RA 92.7 0.42 9E-06 37.8 6.2 43 43-85 123-168 (342)
493 PRK10917 ATP-dependent DNA hel 92.7 0.77 1.7E-05 39.8 8.2 78 74-160 471-560 (681)
494 COG2109 BtuR ATP:corrinoid ade 92.7 1.6 3.5E-05 31.4 8.5 29 149-177 122-150 (198)
495 TIGR00631 uvrb excinuclease AB 92.7 1.2 2.7E-05 38.4 9.3 79 74-163 442-524 (655)
496 TIGR02759 TraD_Ftype type IV c 92.7 0.2 4.3E-06 42.3 4.6 28 42-70 175-202 (566)
497 KOG0744|consensus 92.7 0.5 1.1E-05 37.0 6.3 67 43-110 177-257 (423)
498 PRK05636 replicative DNA helic 92.7 0.62 1.4E-05 38.8 7.4 39 40-80 262-300 (505)
499 PF04665 Pox_A32: Poxvirus A32 92.6 0.24 5.2E-06 37.1 4.5 35 45-82 15-49 (241)
500 PF13238 AAA_18: AAA domain; P 92.4 0.095 2.1E-06 34.5 2.0 19 46-64 1-19 (129)
No 1
>KOG0330|consensus
Probab=100.00 E-value=1.7e-33 Score=213.61 Aligned_cols=173 Identities=54% Similarity=0.820 Sum_probs=163.1
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+...+|.+|++.+++.+++...++..|+++|.+++|.++.|++++..+.||||||.+|++|+++.+++++..++++|++|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
+++|+.|+++.++.++...|++++.+.|+.....+...+..+++|+|+||+.+.+++...+.++++.++++|+||||.++
T Consensus 138 tRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred cHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 99999999999999999999999999999999888888899999999999999999998799999999999999999999
Q ss_pred ccCChhHHHHHHH
Q psy4275 163 LMTSLKFFFFFFF 175 (182)
Q Consensus 163 ~~~~~~~~~~~~~ 175 (182)
++.+-..++.+.+
T Consensus 218 d~dF~~~ld~ILk 230 (476)
T KOG0330|consen 218 DMDFEEELDYILK 230 (476)
T ss_pred hhhhHHHHHHHHH
Confidence 9988766555443
No 2
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-32 Score=219.18 Aligned_cols=167 Identities=34% Similarity=0.458 Sum_probs=150.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-------CCeeEE
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-------YGIFAL 78 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-------~~~~~l 78 (182)
.+|+++++++++.+.+...|+..|+|+|.++++.+++|+++++++|||+|||.+|++++++.+...+ .+++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 5899999999999999999999999999999999999999999999999999999999998775432 246899
Q ss_pred EEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecc
Q psy4275 79 VLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEA 158 (182)
Q Consensus 79 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~ 158 (182)
|++|+++|+.|+++.+..+.+..++++..+.|+.........+.++++|+|+||+.+.+++.+ +.+.+++++++|+|||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDEa 166 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDEA 166 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEecH
Confidence 999999999999999999999999999999998877776667777899999999999999987 6678899999999999
Q ss_pred ccccccCChhHHHHH
Q psy4275 159 DRLSLMTSLKFFFFF 173 (182)
Q Consensus 159 h~~~~~~~~~~~~~~ 173 (182)
|++.++++......+
T Consensus 167 d~l~~~~f~~~i~~i 181 (423)
T PRK04837 167 DRMFDLGFIKDIRWL 181 (423)
T ss_pred HHHhhcccHHHHHHH
Confidence 999998876554433
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.6e-32 Score=222.52 Aligned_cols=169 Identities=38% Similarity=0.536 Sum_probs=152.3
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-----CCCe
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-----PYGI 75 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-----~~~~ 75 (182)
.|+++.+|+++++++.+.+.+.+.|+..|+|+|.++|+.+++|+++++++|||+|||++|+++++..+... ..++
T Consensus 125 ~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp 204 (545)
T PTZ00110 125 VPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGP 204 (545)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCc
Confidence 37889999999999999999999999999999999999999999999999999999999999988776542 2367
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
.+||++|+++|+.|+.+.++.+....++++.+++|+.....+...+.++++|+|+||+++.+++.. ....+++++++|+
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lVi 283 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVL 283 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEe
Confidence 899999999999999999999999889999999998887777777788999999999999999987 5667889999999
Q ss_pred eccccccccCChhHH
Q psy4275 156 DEADRLSLMTSLKFF 170 (182)
Q Consensus 156 DE~h~~~~~~~~~~~ 170 (182)
||||+|.++++...+
T Consensus 284 DEAd~mld~gf~~~i 298 (545)
T PTZ00110 284 DEADRMLDMGFEPQI 298 (545)
T ss_pred ehHHhhhhcchHHHH
Confidence 999999998865433
No 4
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=6.9e-32 Score=220.64 Aligned_cols=168 Identities=36% Similarity=0.549 Sum_probs=151.2
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhcc-------CCC
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCE-------DPY 73 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~-------~~~ 73 (182)
.|+++.+|+++++++.+.+.+.+.|+..|+|+|.++++.+..|+++++++|||+|||.+|+++++..+.. ...
T Consensus 116 ~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~ 195 (518)
T PLN00206 116 VPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQR 195 (518)
T ss_pred CCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccC
Confidence 3789999999999999999999999999999999999999999999999999999999999999887642 124
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
+++++|++|+++|+.|+.+.++.+.+..++++..+.|+.....+...+.++++|+|+||+++.+++.. +...+++++++
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~l 274 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVL 274 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEE
Confidence 67999999999999999999999998888999888888877776677778899999999999999987 56788999999
Q ss_pred EEeccccccccCChhH
Q psy4275 154 VLDEADRLSLMTSLKF 169 (182)
Q Consensus 154 I~DE~h~~~~~~~~~~ 169 (182)
|+||||+|.++++...
T Consensus 275 ViDEad~ml~~gf~~~ 290 (518)
T PLN00206 275 VLDEVDCMLERGFRDQ 290 (518)
T ss_pred EeecHHHHhhcchHHH
Confidence 9999999999886554
No 5
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.3e-31 Score=222.11 Aligned_cols=172 Identities=38% Similarity=0.559 Sum_probs=154.1
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
|.+...+|+++++++.+.+++.+.|+.+|+|+|.++++.+.+++++++++|||+|||.++.+++++.+.....++++||+
T Consensus 1 ~~~~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL 80 (629)
T PRK11634 1 MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVL 80 (629)
T ss_pred CCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 34667789999999999999999999999999999999999999999999999999999999999887665556799999
Q ss_pred cCCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
+|+++|+.|+++.++.+.+.. ++++..++|+.+...+...+..+++|+|+||+.+.+++.. +.+.+++++++|+||||
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEAD 159 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHH
Confidence 999999999999999887765 7889999999887777777778899999999999999987 66788999999999999
Q ss_pred cccccCChhHHHHH
Q psy4275 160 RLSLMTSLKFFFFF 173 (182)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (182)
+|+++++.+.+..+
T Consensus 160 ~ml~~gf~~di~~I 173 (629)
T PRK11634 160 EMLRMGFIEDVETI 173 (629)
T ss_pred HHhhcccHHHHHHH
Confidence 99999887665544
No 6
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.8e-31 Score=214.82 Aligned_cols=167 Identities=40% Similarity=0.565 Sum_probs=150.3
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
+.+|+++++++.+.+.+.+.|+..|+|+|.++++.+.+|+++++++|||+|||.+|.++++..+.....+.+++|++|++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999886655566899999999
Q ss_pred HHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 85 ELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 85 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
+|+.|+.+.++.+.+.. ++++..++|+.+...+...+..+++|+|+||+.+.+++++ +.+.+++++++|+||||+|.+
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~l~ 161 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRMLD 161 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHHhC
Confidence 99999999999987755 6899999999988777777778899999999999999987 666788999999999999999
Q ss_pred cCChhHHHH
Q psy4275 164 MTSLKFFFF 172 (182)
Q Consensus 164 ~~~~~~~~~ 172 (182)
.++...+..
T Consensus 162 ~g~~~~l~~ 170 (460)
T PRK11776 162 MGFQDAIDA 170 (460)
T ss_pred cCcHHHHHH
Confidence 887655443
No 7
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.7e-31 Score=218.84 Aligned_cols=166 Identities=36% Similarity=0.535 Sum_probs=148.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-------CCeeEEE
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-------YGIFALV 79 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-------~~~~~li 79 (182)
+|++|++++.+.+.|.+.|+..++|+|.++++.+++|+++++++|||+|||.+|++++++.+...+ ..+++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 599999999999999999999999999999999999999999999999999999999998875421 2468999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 80 LTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 80 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
++|+++|+.|+++.++.+....++++..++|+.....+...+.++++|+|+||+.+.+++...+.+.++.++++|+||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 99999999999999999999999999999999888777777777899999999999999987556678889999999999
Q ss_pred cccccCChhHHHH
Q psy4275 160 RLSLMTSLKFFFF 172 (182)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (182)
+|.++++...+..
T Consensus 170 ~lld~gf~~~i~~ 182 (572)
T PRK04537 170 RMFDLGFIKDIRF 182 (572)
T ss_pred HHhhcchHHHHHH
Confidence 9999886654433
No 8
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.98 E-value=5e-31 Score=211.96 Aligned_cols=168 Identities=38% Similarity=0.534 Sum_probs=150.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC----CCCeeEEEEc
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED----PYGIFALVLT 81 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~----~~~~~~lil~ 81 (182)
.+|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||.+|+++++..+... ....+++|++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 369999999999999999999999999999999999999999999999999999999999877542 2246899999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
|+++|+.|+++.+..+.+..++++..++|+.........+.++++|+|+||+.+.+++.. +.+.+++++++|+||||+|
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHH
Confidence 999999999999999999999999999999887777777777899999999999999987 6677889999999999999
Q ss_pred cccCChhHHHHHH
Q psy4275 162 SLMTSLKFFFFFF 174 (182)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (182)
.++++......+.
T Consensus 160 l~~~~~~~~~~i~ 172 (434)
T PRK11192 160 LDMGFAQDIETIA 172 (434)
T ss_pred hCCCcHHHHHHHH
Confidence 9998766655443
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.98 E-value=3.6e-31 Score=213.73 Aligned_cols=163 Identities=40% Similarity=0.595 Sum_probs=146.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC------CCeeEEEE
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP------YGIFALVL 80 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~------~~~~~lil 80 (182)
+|++|++++++.+.+.+.|+..|+|+|.++++.+.+++++++++|||+|||.+|++++++.+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 799999999999999999999999999999999999999999999999999999999998875432 13479999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
+|+++|+.|+.+.++.+.+..++++..+.|+.+...+...+.++++|+|+||+.+++++.. +.+.+++++++|+||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHHH
Confidence 9999999999999999999989999999999887777667778899999999999999877 566789999999999999
Q ss_pred ccccCChhHH
Q psy4275 161 LSLMTSLKFF 170 (182)
Q Consensus 161 ~~~~~~~~~~ 170 (182)
|.++++...+
T Consensus 161 ll~~~~~~~i 170 (456)
T PRK10590 161 MLDMGFIHDI 170 (456)
T ss_pred HhccccHHHH
Confidence 9998875443
No 10
>KOG0331|consensus
Probab=99.97 E-value=3.7e-31 Score=210.46 Aligned_cols=162 Identities=40% Similarity=0.570 Sum_probs=153.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhcc------CCCCeeEEEE
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCE------DPYGIFALVL 80 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~------~~~~~~~lil 80 (182)
.|+.++++++..+++...|+..|+|+|.+.|+.++.|++++..+.||+|||++|+++++.++.+ +++++++|++
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 6889999999999999999999999999999999999999999999999999999999998876 3457899999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
+||++||.|+...+..+.+.+++++.+++|+.....+.+.+.++.+|+|+||+.+.++++. +...+++++++|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 788999999999999999
Q ss_pred ccccCChhH
Q psy4275 161 LSLMTSLKF 169 (182)
Q Consensus 161 ~~~~~~~~~ 169 (182)
|++.++..-
T Consensus 251 MldmGFe~q 259 (519)
T KOG0331|consen 251 MLDMGFEPQ 259 (519)
T ss_pred hhccccHHH
Confidence 999996543
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.3e-30 Score=210.97 Aligned_cols=170 Identities=41% Similarity=0.593 Sum_probs=153.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhcc-CCCCee-EEEEcCC
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCE-DPYGIF-ALVLTPT 83 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~-~~~~~~-~lil~p~ 83 (182)
.+|+++++++++.+++.+.||..|+|+|.+++|.++.|++++.+++||+|||.+|.+++++.+.. ...... ++|++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 57999999999999999999999999999999999999999999999999999999999999763 222222 9999999
Q ss_pred HHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 84 RELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
++||.|+++.+..+.+.. ++++..++|+.+...+...+..+++|+|+||+++++++.. +.++++++.++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhh
Confidence 999999999999999998 7999999999998888888877899999999999999998 58899999999999999999
Q ss_pred ccCChhHHHHHHHH
Q psy4275 163 LMTSLKFFFFFFFL 176 (182)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (182)
+.++.+....+...
T Consensus 188 d~Gf~~~i~~I~~~ 201 (513)
T COG0513 188 DMGFIDDIEKILKA 201 (513)
T ss_pred cCCCHHHHHHHHHh
Confidence 99887766655443
No 12
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=7.9e-30 Score=185.66 Aligned_cols=165 Identities=46% Similarity=0.664 Sum_probs=146.4
Q ss_pred ccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC--CCCeeEEEEcCCHH
Q psy4275 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED--PYGIFALVLTPTRE 85 (182)
Q Consensus 8 ~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~ 85 (182)
|+++++++.+.+.+...|+..++++|.++++.+.+++++++++|||+|||.+++++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 7899999999999999999999999999999999999999999999999999999999888776 45779999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 86 LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
|+.|+.+.++.+....++++..++|+.........+.++++|+|+||+.+..++.+ ....+++++++|+||+|++.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccC
Confidence 99999999999988888999999998887666666666899999999999999887 44778899999999999998776
Q ss_pred ChhHHHHH
Q psy4275 166 SLKFFFFF 173 (182)
Q Consensus 166 ~~~~~~~~ 173 (182)
+......+
T Consensus 160 ~~~~~~~~ 167 (203)
T cd00268 160 FEDQIREI 167 (203)
T ss_pred hHHHHHHH
Confidence 55544443
No 13
>KOG0338|consensus
Probab=99.97 E-value=3.8e-31 Score=206.74 Aligned_cols=174 Identities=43% Similarity=0.615 Sum_probs=160.7
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCC---eeEEEEc
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYG---IFALVLT 81 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~---~~~lil~ 81 (182)
..+|.+++|+-.+.+++...||..|+|+|..++|-.+-|++++.|+.||+|||.+|++|++++++-++.+ -++||++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 5688999999999999999999999999999999999999999999999999999999999999877643 5899999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
||++|+.|++...+++..++++.++++.|+.+...+.+.+.+.++|+|+||++|.++++....++++++..+|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred cccCChhHHHHHHHHhhcCC
Q psy4275 162 SLMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~ 181 (182)
++.++..- +.++.++.|
T Consensus 340 LeegFade---mnEii~lcp 356 (691)
T KOG0338|consen 340 LEEGFADE---MNEIIRLCP 356 (691)
T ss_pred HHHHHHHH---HHHHHHhcc
Confidence 99987654 444444443
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=1.2e-29 Score=206.02 Aligned_cols=164 Identities=37% Similarity=0.514 Sum_probs=144.8
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC-------Cee
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY-------GIF 76 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~-------~~~ 76 (182)
....|.++++++.+.+++.+.|+..++++|.++++.+.+|+|+++++|||+|||++|+++++..+.+.+. ..+
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 4567899999999999999999999999999999999999999999999999999999999998866431 468
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 77 ALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 77 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
++|++|+++|+.|+.+.++.+.+..++++..++|+.........+. +.++|+|+||++++++... ....+++++++|+
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEe
Confidence 9999999999999999999999999999999999877665555543 4689999999999998877 4567889999999
Q ss_pred eccccccccCChh
Q psy4275 156 DEADRLSLMTSLK 168 (182)
Q Consensus 156 DE~h~~~~~~~~~ 168 (182)
||+|++.+.++..
T Consensus 244 DEah~l~~~~~~~ 256 (475)
T PRK01297 244 DEADRMLDMGFIP 256 (475)
T ss_pred chHHHHHhcccHH
Confidence 9999999887644
No 15
>KOG0340|consensus
Probab=99.97 E-value=1.2e-30 Score=196.05 Aligned_cols=172 Identities=57% Similarity=0.937 Sum_probs=161.5
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
....+|+.||+++|+.+.++..|+..|+|.|..|+|.++.|++++-++.||+|||.++.+++++++...+.+.++++++|
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC---CCCCCCCccEEEEeccc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC---NTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~---~~~~~~~~~~iI~DE~h 159 (182)
|++|+-|+++.+..+++..+.+++++.|+++...+...+..+++++|+||+.+.+++... ..+.++++.++|+|||+
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 999999999999999999999999999999999999999999999999999999999885 34578889999999999
Q ss_pred cccccCChhHHHHHH
Q psy4275 160 RLSLMTSLKFFFFFF 174 (182)
Q Consensus 160 ~~~~~~~~~~~~~~~ 174 (182)
.|++..+...+.-+.
T Consensus 164 rvL~~~f~d~L~~i~ 178 (442)
T KOG0340|consen 164 RVLAGCFPDILEGIE 178 (442)
T ss_pred hhhccchhhHHhhhh
Confidence 999998877766554
No 16
>KOG0348|consensus
Probab=99.97 E-value=3.6e-30 Score=202.21 Aligned_cols=172 Identities=39% Similarity=0.558 Sum_probs=156.8
Q ss_pred CCccCCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC------CCCeeEE
Q psy4275 6 KSFTDLKLNPWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED------PYGIFAL 78 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~------~~~~~~l 78 (182)
..|..+|+++.+...+.. .++..|+..|++++|.+++|+++++.++||+|||++|++++.+.+.+. .+|+.++
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 468899999999999975 699999999999999999999999999999999999999999987653 4588999
Q ss_pred EEcCCHHHHHHHHHHHHHhhccCCceE-EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEec
Q psy4275 79 VLTPTRELAYQIGDQFLVLGKVMNLRV-SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 79 il~p~~~l~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE 157 (182)
|++||++|+.|+++.+.++.+.+.+-| +.+.|+.....+.+.+.++++|+|+||+++++++++...+.+++++++|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 999999999999999999999877655 6778888888888899999999999999999999998999999999999999
Q ss_pred cccccccCChhHHHHHHHHh
Q psy4275 158 ADRLSLMTSLKFFFFFFFLK 177 (182)
Q Consensus 158 ~h~~~~~~~~~~~~~~~~~~ 177 (182)
+|.+++.++-+.+..+....
T Consensus 296 aDrlleLGfekdit~Il~~v 315 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAV 315 (708)
T ss_pred hhHHHhccchhhHHHHHHHH
Confidence 99999999988887776655
No 17
>PTZ00424 helicase 45; Provisional
Probab=99.97 E-value=1.9e-29 Score=200.90 Aligned_cols=164 Identities=36% Similarity=0.511 Sum_probs=145.8
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
...+|+++++++.+.+.+.++|+..|+|+|.++++.+.++++.++++|||+|||.+++++++..+.....+.+++|++|+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 45789999999999999999999999999999999999999999999999999999999999887654456789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++|+.|+.+.+..+....+..+..+.|+.........+.++++|+|+||+.+.+.+.. +...+++++++|+||+|++.+
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~~ 184 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEMLS 184 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHHh
Confidence 9999999999999988888888888888776666666667889999999999998876 556788999999999999998
Q ss_pred cCChh
Q psy4275 164 MTSLK 168 (182)
Q Consensus 164 ~~~~~ 168 (182)
+++..
T Consensus 185 ~~~~~ 189 (401)
T PTZ00424 185 RGFKG 189 (401)
T ss_pred cchHH
Confidence 77654
No 18
>PRK02362 ski2-like helicase; Provisional
Probab=99.96 E-value=1.1e-27 Score=203.04 Aligned_cols=165 Identities=24% Similarity=0.294 Sum_probs=138.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
++|+++++++++.+.+.+.|+.+++|+|.++++. +..|+|+++++|||+|||.++.++++..+.. +.+++|++|++
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~r 77 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLR 77 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChH
Confidence 4689999999999999999999999999999988 6779999999999999999999999988754 56899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 85 ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 85 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+|+.|.++.++++.. .++++..++|+..... .....++|+|+||+++..++++ ....+++++++|+||+|.+.+.
T Consensus 78 aLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d~ 152 (737)
T PRK02362 78 ALASEKFEEFERFEE-LGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDSA 152 (737)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCCC
Confidence 999999999987653 5899999999875433 2235689999999999999886 3345788999999999999987
Q ss_pred CChhHHHH-HHHHhh
Q psy4275 165 TSLKFFFF-FFFLKY 178 (182)
Q Consensus 165 ~~~~~~~~-~~~~~~ 178 (182)
+....++. +.++++
T Consensus 153 ~rg~~le~il~rl~~ 167 (737)
T PRK02362 153 NRGPTLEVTLAKLRR 167 (737)
T ss_pred cchHHHHHHHHHHHh
Confidence 65554444 455544
No 19
>KOG0345|consensus
Probab=99.96 E-value=1.3e-27 Score=185.34 Aligned_cols=173 Identities=38% Similarity=0.554 Sum_probs=145.8
Q ss_pred CCccCCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-----CCeeEE
Q psy4275 6 KSFTDLK--LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-----YGIFAL 78 (182)
Q Consensus 6 ~~~~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-----~~~~~l 78 (182)
..|++++ |++++.+++...|+...+|.|..++|.+.+++++++.++||||||++|++|+++.+.++. ...-++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677775 559999999999999999999999999999999999999999999999999999985532 123689
Q ss_pred EEcCCHHHHHHHHHHHHHhhcc-CCceEEEEEcCCchhhhhHHh-cCCCcEEEEChHHHHHHHhc-CCCCCCCCccEEEE
Q psy4275 79 VLTPTRELAYQIGDQFLVLGKV-MNLRVSIITGGMDMVDQGKEL-AKKPHIVIATPGRLADHLDT-CNTFSLNRIKFLVL 155 (182)
Q Consensus 79 il~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~-~~~~~~~~~~~iI~ 155 (182)
||+||++|+.|+.+.+..+... .++++.++.|+.+.......+ .++++|+||||+++.+++++ ...++++++.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988777 578889999997765544444 45789999999999999987 34567889999999
Q ss_pred eccccccccCChhHHHHHHHHhhcCC
Q psy4275 156 DEADRLSLMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 156 DE~h~~~~~~~~~~~~~~~~~~~~~~ 181 (182)
||||.+++.++.+.. ..+...||
T Consensus 164 DEADrLldmgFe~~~---n~ILs~LP 186 (567)
T KOG0345|consen 164 DEADRLLDMGFEASV---NTILSFLP 186 (567)
T ss_pred cchHhHhcccHHHHH---HHHHHhcc
Confidence 999999999987654 44555555
No 20
>KOG0339|consensus
Probab=99.96 E-value=3e-28 Score=190.60 Aligned_cols=166 Identities=39% Similarity=0.557 Sum_probs=156.7
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-----CCCe
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-----PYGI 75 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-----~~~~ 75 (182)
.|+++..|+.+++++.+..+.++..+..++|+|.++++..+.|++++-.+-||+|||.+++.+++..+... ++++
T Consensus 218 ~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gP 297 (731)
T KOG0339|consen 218 PPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGP 297 (731)
T ss_pred CCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999998877653 4588
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
..+|++||++|+.|++.+++++.+..++++++++|+.+.+++...+..++.|+|+||+++.++++. +..++.+++++|+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~ 376 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVL 376 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999988 7788999999999
Q ss_pred eccccccccCCh
Q psy4275 156 DEADRLSLMTSL 167 (182)
Q Consensus 156 DE~h~~~~~~~~ 167 (182)
||+++|.+.++-
T Consensus 377 DEadrmfdmGfe 388 (731)
T KOG0339|consen 377 DEADRMFDMGFE 388 (731)
T ss_pred echhhhhccccH
Confidence 999999999874
No 21
>KOG0328|consensus
Probab=99.95 E-value=2.9e-28 Score=178.77 Aligned_cols=175 Identities=34% Similarity=0.517 Sum_probs=159.7
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+++++|+++|+++++.+..-..|++.|..+|+.+++.+++|++++.++.+|+|||..+.+.++..+.-+...-+++++.|
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsP 103 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSP 103 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecC
Confidence 56889999999999999999999999999999999999999999999999999999998888887766655679999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
+++|+.|+.+.+..++...++.+..+.|+++.-+....+.-+.+++.+||++++++++. +.++-+.+.++|+||+|.|+
T Consensus 104 TRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDEaDemL 182 (400)
T KOG0328|consen 104 TRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDEADEML 182 (400)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEeccHHHHH
Confidence 99999999999999999999999999999998777777777899999999999999998 67788899999999999999
Q ss_pred ccCChhHHHHHHHHhhcCC
Q psy4275 163 LMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (182)
+.++ ...+..+-+|+|
T Consensus 183 ~kgf---k~Qiydiyr~lp 198 (400)
T KOG0328|consen 183 NKGF---KEQIYDIYRYLP 198 (400)
T ss_pred HhhH---HHHHHHHHHhCC
Confidence 9954 467777777777
No 22
>KOG0343|consensus
Probab=99.95 E-value=5.8e-28 Score=190.54 Aligned_cols=174 Identities=37% Similarity=0.539 Sum_probs=156.7
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC----CCCeeEEE
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED----PYGIFALV 79 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~----~~~~~~li 79 (182)
.+..|++||++....+.|+..++..++..|+++++..+.|++++-.+.||+|||++++.++++.+++. .+|--+||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 45689999999999999999999999999999999999999999999999999999999999998764 35667999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 80 LTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 80 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
|.||++||.|..+.+.++++..++..+++.|+.....+...+ ++.+|+||||+++++++.+...++.+++.++|+||||
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 999999999999999999999999999999999866555443 6789999999999999999888899999999999999
Q ss_pred cccccCChhHHHHHHHHhhcCC
Q psy4275 160 RLSLMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~ 181 (182)
+|+++++...++. +..+||
T Consensus 226 R~LDMGFk~tL~~---Ii~~lP 244 (758)
T KOG0343|consen 226 RMLDMGFKKTLNA---IIENLP 244 (758)
T ss_pred HHHHHhHHHHHHH---HHHhCC
Confidence 9999998876554 445554
No 23
>KOG0342|consensus
Probab=99.95 E-value=1.5e-27 Score=185.77 Aligned_cols=172 Identities=37% Similarity=0.496 Sum_probs=157.9
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC----CCCeeEEEE
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED----PYGIFALVL 80 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~----~~~~~~lil 80 (182)
...|+.+.+++...+++...|+...++.|...++-++.|++++..+-||+|||+++++++++.+... ..+..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 3457888999999999999999999999999999999999999999999999999999999988764 245689999
Q ss_pred cCCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
+||++|+.|.+.+++.+.+.. ++.+..+.|+.+.......+.++++|+|+||+.+++++++.+.+..++++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999988 8999999999998888888888999999999999999999888888899999999999
Q ss_pred cccccCChhHHHHHHHH
Q psy4275 160 RLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 160 ~~~~~~~~~~~~~~~~~ 176 (182)
++++.++.+.+..+..+
T Consensus 241 rlLd~GF~~di~~Ii~~ 257 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKI 257 (543)
T ss_pred hhhhcccHHHHHHHHHh
Confidence 99999999887776543
No 24
>KOG0346|consensus
Probab=99.95 E-value=8.8e-28 Score=185.11 Aligned_cols=173 Identities=34% Similarity=0.467 Sum_probs=149.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC------CCCeeEEE
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED------PYGIFALV 79 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~------~~~~~~li 79 (182)
.+|++|++++.+.+++.+.|+..|+-+|..++|..+.|++++..+-||+|||.+|+++++..+.+. +.++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 589999999999999999999999999999999999999999999999999999999999988753 45788999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCC--ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEec
Q psy4275 80 LTPTRELAYQIGDQFLVLGKVMN--LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 80 l~p~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE 157 (182)
++||++|+.|+++.+.++...++ +++.-+.++.+.......+...++|+|+||++++.++........+.++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999988775 4455555455555555667778999999999999999885446888999999999
Q ss_pred cccccccCChhHHHHHHHHhhcCC
Q psy4275 158 ADRLSLMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 158 ~h~~~~~~~~~~~~~~~~~~~~~~ 181 (182)
||.+++.+|-+ -+.++.+.||
T Consensus 179 ADLllsfGYee---dlk~l~~~LP 199 (569)
T KOG0346|consen 179 ADLLLSFGYEE---DLKKLRSHLP 199 (569)
T ss_pred hhhhhhcccHH---HHHHHHHhCC
Confidence 99999998855 4566666666
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.95 E-value=2e-26 Score=194.57 Aligned_cols=174 Identities=20% Similarity=0.257 Sum_probs=138.4
Q ss_pred CCccCCccCCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEE
Q psy4275 2 EDPIKSFTDLK--LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALV 79 (182)
Q Consensus 2 ~~~~~~~~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~li 79 (182)
|.....+.+++ +++++.+++.+.|+..|+++|.++++.+.+|+|+++++|||||||.+|.+++++.+.+++ +.++||
T Consensus 8 p~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~-~~~aL~ 86 (742)
T TIGR03817 8 PARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDP-RATALY 86 (742)
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCC-CcEEEE
Confidence 34445566654 899999999999999999999999999999999999999999999999999999887644 569999
Q ss_pred EcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhc-CCC--CCCCCccEEEEe
Q psy4275 80 LTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDT-CNT--FSLNRIKFLVLD 156 (182)
Q Consensus 80 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~--~~~~~~~~iI~D 156 (182)
++|+++|+.|+.+.++.+. ..++++..+.|+....++ ..+.++++|+|+||+.+...+-. ... ..+++++++|+|
T Consensus 87 l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViD 164 (742)
T TIGR03817 87 LAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVID 164 (742)
T ss_pred EcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEe
Confidence 9999999999999999886 447888889998875443 44556789999999998753321 111 137789999999
Q ss_pred ccccccccCChhHHHHHHHHhh
Q psy4275 157 EADRLSLMTSLKFFFFFFFLKY 178 (182)
Q Consensus 157 E~h~~~~~~~~~~~~~~~~~~~ 178 (182)
|+|.|.+.........+.++++
T Consensus 165 Eah~~~g~fg~~~~~il~rL~r 186 (742)
T TIGR03817 165 ECHSYRGVFGSHVALVLRRLRR 186 (742)
T ss_pred ChhhccCccHHHHHHHHHHHHH
Confidence 9999976433344444444443
No 26
>KOG0335|consensus
Probab=99.95 E-value=1.3e-27 Score=187.79 Aligned_cols=172 Identities=34% Similarity=0.467 Sum_probs=155.3
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---------
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP--------- 72 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~--------- 72 (182)
|.++..|++-.+.+.+....+..++..++|+|+.+++.+..|++.++||+||+|||.+++++++..+....
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 56777888888999999999999999999999999999999999999999999999999999999887642
Q ss_pred -CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCcc
Q psy4275 73 -YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIK 151 (182)
Q Consensus 73 -~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~ 151 (182)
..++++|++||++|++|++++.+++.-..+.+.+..+|+.+.-.+.+.+..+|+|+|+||+++.+++.. +.+.+.+++
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k 228 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCK 228 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCc
Confidence 148999999999999999999999999999999999999888888888889999999999999999988 888899999
Q ss_pred EEEEeccccccc-cCChhHHHHHH
Q psy4275 152 FLVLDEADRLSL-MTSLKFFFFFF 174 (182)
Q Consensus 152 ~iI~DE~h~~~~-~~~~~~~~~~~ 174 (182)
++|+||||.|+| .++-..+..+.
T Consensus 229 ~~vLDEADrMlD~mgF~p~Ir~iv 252 (482)
T KOG0335|consen 229 FLVLDEADRMLDEMGFEPQIRKIV 252 (482)
T ss_pred EEEecchHHhhhhccccccHHHHh
Confidence 999999999999 66665555443
No 27
>PRK00254 ski2-like helicase; Provisional
Probab=99.95 E-value=2.2e-26 Score=194.84 Aligned_cols=160 Identities=24% Similarity=0.297 Sum_probs=136.2
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
+|+++++++.+.+.+.+.|+..++|+|.++++. +..|+|+++++|||+|||.++.++++..+..+ +.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 688999999999999999999999999999986 78899999999999999999999998887654 568999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 86 LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
|+.|.++.++.+. ..++++..++|+..... ...++++|+|+||+++..+++. +...+++++++|+||+|.+.+.+
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~---~~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTD---EWLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCch---hhhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCCcc
Confidence 9999999988764 46899999999876432 2335789999999999998876 44467899999999999998876
Q ss_pred ChhHHHHH
Q psy4275 166 SLKFFFFF 173 (182)
Q Consensus 166 ~~~~~~~~ 173 (182)
....++.+
T Consensus 155 rg~~le~i 162 (720)
T PRK00254 155 RGATLEMI 162 (720)
T ss_pred chHHHHHH
Confidence 55544433
No 28
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=3.3e-26 Score=161.80 Aligned_cols=142 Identities=31% Similarity=0.455 Sum_probs=120.4
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIIT 109 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 109 (182)
+|+|.++++.+.+++++++.+|||+|||.++..+++..+.+. ...++++++|++++++|..+.+..+....++++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999888776 4459999999999999999999999888888999998
Q ss_pred cCCchh-hhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 110 GGMDMV-DQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 110 ~~~~~~-~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
|+.... .....+.++++|+|+||+++.+.++.... ++.+++++|+||+|++.++.+......+
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i 143 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI-NISRLSLIVIDEAHHLSDETFRAMLKSI 143 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS-TGTTESEEEEETHHHHHHTTHHHHHHHH
T ss_pred ccccccccccccccccccccccCcchhhcccccccc-ccccceeeccCcccccccccHHHHHHHH
Confidence 888755 33344456899999999999999988433 6777999999999999998655544333
No 29
>KOG0333|consensus
Probab=99.95 E-value=7e-27 Score=183.45 Aligned_cols=178 Identities=38% Similarity=0.556 Sum_probs=159.5
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC--------
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-------- 72 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-------- 72 (182)
+|.|+.+|++.+++.++.+.+.+.|+..|+|+|.+++|..+.+++.|..+.||||||.+|+++++..+...+
T Consensus 240 lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 240 LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 589999999999999999999999999999999999999999999999999999999999999987765532
Q ss_pred -CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCcc
Q psy4275 73 -YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIK 151 (182)
Q Consensus 73 -~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~ 151 (182)
.++.+++++|++.|+.|+.++-.++++.+++++..+.|+.+.+++-..+..+|+|+|+||+.+.+-+.+ ..+-+++..
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qct 398 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCT 398 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCc
Confidence 378999999999999999999999999999999999999998888778888999999999999999987 666788899
Q ss_pred EEEEeccccccccCChhHHHHHHHHhhcCCC
Q psy4275 152 FLVLDEADRLSLMTSLKFFFFFFFLKYYIPS 182 (182)
Q Consensus 152 ~iI~DE~h~~~~~~~~~~~~~~~~~~~~~~~ 182 (182)
++|+|||+.|.+.++-. -...++.++||
T Consensus 399 yvvldeadrmiDmgfE~---dv~~iL~~mPs 426 (673)
T KOG0333|consen 399 YVVLDEADRMIDMGFEP---DVQKILEQMPS 426 (673)
T ss_pred eEeccchhhhhcccccH---HHHHHHHhCCc
Confidence 99999999999998743 34444555553
No 30
>KOG0347|consensus
Probab=99.95 E-value=4.3e-27 Score=185.53 Aligned_cols=173 Identities=37% Similarity=0.587 Sum_probs=152.8
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC-CcEEEECCCCChHHHHHHHHHHHhhccCC----------
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDP---------- 72 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~---------- 72 (182)
.+.-|..|+++.++.+++...||.+|+++|...+|....| .+++-.+.||||||++|-+++++.+....
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 4667999999999999999999999999999999998887 68888999999999999999999655432
Q ss_pred -CCee--EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCC--CC
Q psy4275 73 -YGIF--ALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTF--SL 147 (182)
Q Consensus 73 -~~~~--~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~--~~ 147 (182)
.+++ .+|++||++|+.|+.++++.+.+..++++..+.|+.....+.+.+...++|+|+||++|..++.+.+.. .+
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~ 338 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNF 338 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhh
Confidence 1344 899999999999999999999999999999999999998888998889999999999999999885542 78
Q ss_pred CCccEEEEeccccccccCChhHHHHHHHH
Q psy4275 148 NRIKFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 148 ~~~~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
++++++|+||+|+|...++-+-+..+..+
T Consensus 339 k~vkcLVlDEaDRmvekghF~Els~lL~~ 367 (731)
T KOG0347|consen 339 KKVKCLVLDEADRMVEKGHFEELSKLLKH 367 (731)
T ss_pred hhceEEEEccHHHHhhhccHHHHHHHHHH
Confidence 89999999999999999876655554443
No 31
>PRK01172 ski2-like helicase; Provisional
Probab=99.94 E-value=6.4e-26 Score=190.98 Aligned_cols=161 Identities=19% Similarity=0.243 Sum_probs=134.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
++|+++++++.+.+.+...++. ++++|.++++.+.+++++++++|||+|||.++.++++..+.+ +.+++|++|+++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~ra 76 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRS 76 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHH
Confidence 4688999999999999988875 999999999999999999999999999999999998887765 458999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 86 LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
|+.|.++.++++. ..+.++....|+..... ...+.++|+|+||+++..+++++ ...+++++++|+||+|++.+.+
T Consensus 77 La~q~~~~~~~l~-~~g~~v~~~~G~~~~~~---~~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 77 LAMEKYEELSRLR-SLGMRVKISIGDYDDPP---DFIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHh-hcCCeEEEEeCCCCCCh---hhhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccCCC
Confidence 9999999998764 46888888888775432 22356899999999999988774 3457889999999999998876
Q ss_pred ChhHHHHHHH
Q psy4275 166 SLKFFFFFFF 175 (182)
Q Consensus 166 ~~~~~~~~~~ 175 (182)
....++.+..
T Consensus 152 rg~~le~ll~ 161 (674)
T PRK01172 152 RGPTLETVLS 161 (674)
T ss_pred ccHHHHHHHH
Confidence 6555554433
No 32
>KOG0350|consensus
Probab=99.94 E-value=2.2e-26 Score=179.70 Aligned_cols=173 Identities=35% Similarity=0.510 Sum_probs=150.4
Q ss_pred cCCccCCCCCHHHHHH----------HHHCCCCCChHHHHhhhhhhhC---------CCcEEEECCCCChHHHHHHHHHH
Q psy4275 5 IKSFTDLKLNPWLIRQ----------CQTIGVKTPTEIQKAIIPHVLN---------DEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~----------l~~~~~~~~~~~Q~~~~~~~~~---------~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
.+-|+.++.++.+... +.+.++.+..|.|...+++++. .+++.+.+|||+|||++|.+++.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3446666666555544 8888999999999999988843 57899999999999999999999
Q ss_pred HhhccCCC-CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCC-----CcEEEEChHHHHHHH
Q psy4275 66 QKWCEDPY-GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK-----PHIVIATPGRLADHL 139 (182)
Q Consensus 66 ~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~Ilv~T~~~l~~~~ 139 (182)
..+..++. --|++||+|++.|+.|+++.++.+....|+.|+...|..+...+.+++.+. .+|+|+||+++.+++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 99988753 359999999999999999999999999999999999999988887777663 389999999999999
Q ss_pred hcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHh
Q psy4275 140 DTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLK 177 (182)
Q Consensus 140 ~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~ 177 (182)
...+.+.+++++++|+||||+|++..+..+...+....
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~ 323 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLC 323 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 98899999999999999999999999988888776554
No 33
>KOG0326|consensus
Probab=99.94 E-value=4.5e-27 Score=175.14 Aligned_cols=167 Identities=33% Similarity=0.465 Sum_probs=156.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
.|+++.+..++...+.+.|+..|.|+|++.+|..+.|++++..+.+|+|||.++.+++++.+....+..++++++|+++|
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTREL 165 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchh
Confidence 57889999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 87 AYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 87 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
|-|....++++.+..+++++..+|+++.....-.+.+..+++|+||++++++.++ +...+++..++|+||||.+++..+
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhhhhchhh
Confidence 9999999999999999999999999998888888888999999999999999988 777899999999999999999988
Q ss_pred hhHHHHHH
Q psy4275 167 LKFFFFFF 174 (182)
Q Consensus 167 ~~~~~~~~ 174 (182)
....+.+.
T Consensus 245 ~~~~e~li 252 (459)
T KOG0326|consen 245 QPIVEKLI 252 (459)
T ss_pred hhHHHHHH
Confidence 87766554
No 34
>KOG0334|consensus
Probab=99.93 E-value=1e-25 Score=188.40 Aligned_cols=167 Identities=40% Similarity=0.598 Sum_probs=152.5
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-----CCCee
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-----PYGIF 76 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-----~~~~~ 76 (182)
|+|+.+|+.-|++..+...++++|+..++|+|.++||++..|+++|.++.||+|||++|+++++.+.... ++|+-
T Consensus 361 pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 361 PKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred CcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 7899999999999999999999999999999999999999999999999999999999999998665432 45889
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC--CCCCCCCccEEE
Q psy4275 77 ALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC--NTFSLNRIKFLV 154 (182)
Q Consensus 77 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~~~~~~~~iI 154 (182)
++|++||++|+.|+.++++++.+.+++++++++|+....++...+..++.|+||||+.+.+.+-.. +..++.++.++|
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv 520 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLV 520 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999987542 344777888999
Q ss_pred EeccccccccCChh
Q psy4275 155 LDEADRLSLMTSLK 168 (182)
Q Consensus 155 ~DE~h~~~~~~~~~ 168 (182)
+||||.|.+.++-.
T Consensus 521 ~deaDrmfdmgfeP 534 (997)
T KOG0334|consen 521 LDEADRMFDMGFEP 534 (997)
T ss_pred echhhhhheeccCc
Confidence 99999999877644
No 35
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.93 E-value=4.5e-25 Score=184.31 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-----CCCeeEEEEcCCHHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-----PYGIFALVLTPTRELA 87 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-----~~~~~~lil~p~~~l~ 87 (182)
+++.+.+.+... +..|+|.|.++++.+.+|+|+++.+|||+|||.++.++++..+... ..+..++||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788999999877 8899999999999999999999999999999999999999998776 3467999999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC-CCCCCccEEEEeccccccccC-
Q psy4275 88 YQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT-FSLNRIKFLVLDEADRLSLMT- 165 (182)
Q Consensus 88 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~~iI~DE~h~~~~~~- 165 (182)
+.+...++...+..|+.+.+.+|++...++.+...+-++|+|+||+.+.-++...+. -.+++++++|+||+|.+.+..
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999877755211 268899999999999999554
Q ss_pred ChhHHHHHHHHhhcC
Q psy4275 166 SLKFFFFFFFLKYYI 180 (182)
Q Consensus 166 ~~~~~~~~~~~~~~~ 180 (182)
.......+-+++++.
T Consensus 167 G~~Lsl~LeRL~~l~ 181 (814)
T COG1201 167 GVQLALSLERLRELA 181 (814)
T ss_pred chhhhhhHHHHHhhC
Confidence 555555666665543
No 36
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.92 E-value=2.6e-24 Score=184.78 Aligned_cols=166 Identities=27% Similarity=0.349 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC------CCCeeEEEEcCCHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED------PYGIFALVLTPTREL 86 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~l 86 (182)
+++.+.+.+.. ++..|+|+|.++++.+.+|+|+++++|||+|||.++.+++++.+... ..+.+++|++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67777777765 67899999999999999999999999999999999999999877542 235689999999999
Q ss_pred HHHHHHHHHH-------hh----ccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC-CCCCCccEE
Q psy4275 87 AYQIGDQFLV-------LG----KVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT-FSLNRIKFL 153 (182)
Q Consensus 87 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~~i 153 (182)
++|+++.+.. +. ... ++++...+|+.........+.+.++|+|+||+.+..++...+. ..++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9998765542 22 233 6788999999988777777777899999999999887765321 147889999
Q ss_pred EEeccccccccCChh-HHHHHHHHhhc
Q psy4275 154 VLDEADRLSLMTSLK-FFFFFFFLKYY 179 (182)
Q Consensus 154 I~DE~h~~~~~~~~~-~~~~~~~~~~~ 179 (182)
|+||+|.+.+..... +...+.+++++
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHh
Confidence 999999999765433 33344445443
No 37
>KOG0341|consensus
Probab=99.92 E-value=1e-25 Score=171.78 Aligned_cols=174 Identities=39% Similarity=0.530 Sum_probs=153.5
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhcc--------CC
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCE--------DP 72 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~--------~~ 72 (182)
+|-|+++|.++.++..+.+.+++.|+..|+|+|.+.+|.+++|++.+-.+-||||||++|.++++...++ ..
T Consensus 165 ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~ 244 (610)
T KOG0341|consen 165 IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARG 244 (610)
T ss_pred CCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccC
Confidence 4789999999999999999999999999999999999999999999999999999999999998876654 24
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHhhccC------CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCC
Q psy4275 73 YGIFALVLTPTRELAYQIGDQFLVLGKVM------NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFS 146 (182)
Q Consensus 73 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~ 146 (182)
.++..+|+||+++|+.|.++.+..+...+ .++..++.|+....++...+..+.+|+|+||+++.+++.+ +...
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~s 323 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMS 323 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhcc
Confidence 58899999999999999998888765543 2567888899998888888888999999999999999998 7778
Q ss_pred CCCccEEEEeccccccccCChhHHHHHHH
Q psy4275 147 LNRIKFLVLDEADRLSLMTSLKFFFFFFF 175 (182)
Q Consensus 147 ~~~~~~iI~DE~h~~~~~~~~~~~~~~~~ 175 (182)
+.-.+++++||||+|.+.++-..+-.++.
T Consensus 324 Ld~CRyL~lDEADRmiDmGFEddir~iF~ 352 (610)
T KOG0341|consen 324 LDACRYLTLDEADRMIDMGFEDDIRTIFS 352 (610)
T ss_pred HHHHHHhhhhhHHHHhhccchhhHHHHHH
Confidence 88889999999999999998665554443
No 38
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.91 E-value=2.8e-23 Score=176.77 Aligned_cols=167 Identities=23% Similarity=0.276 Sum_probs=147.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGD 92 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 92 (182)
.++.+...+.+.|..+++.+|.+++..+.+|+|++++.|||||||.+|++++++.+.+.+.+ ++|++-|+++|++...+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 45556888889999999999999999999999999999999999999999999999988755 89999999999999999
Q ss_pred HHHHhhccCC--ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC---CCCCCccEEEEeccccccccCCh
Q psy4275 93 QFLVLGKVMN--LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT---FSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 93 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~---~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
.+.++....+ ++...++|++........+.+.++|+++||+++...+..+.. +.++++++||+||+|-.-.....
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS 213 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGS 213 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchh
Confidence 9999988887 888999999988777777889999999999999885433222 35777999999999999998888
Q ss_pred hHHHHHHHHhhcC
Q psy4275 168 KFFFFFFFLKYYI 180 (182)
Q Consensus 168 ~~~~~~~~~~~~~ 180 (182)
+...+++++++.+
T Consensus 214 ~vA~llRRL~~~~ 226 (851)
T COG1205 214 EVALLLRRLLRRL 226 (851)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 39
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.91 E-value=2.8e-23 Score=174.76 Aligned_cols=163 Identities=24% Similarity=0.310 Sum_probs=133.8
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 10 DLKLNPWLIRQCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 10 ~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
...+++.+.+.++..++.++.+.|+.++.. +.+++|+++++|||+|||.+++++++..+.+. +.+++|+||+++|++
T Consensus 13 ~~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~ 90 (766)
T COG1204 13 KVKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAE 90 (766)
T ss_pred cccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHH
Confidence 344888999999988987777777776655 45579999999999999999999999988875 568999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc-CCh
Q psy4275 89 QIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM-TSL 167 (182)
Q Consensus 89 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~-~~~ 167 (182)
+.+++++ ....+|++|...+|+..... ....+++|+|+||+++....+++.. ....++++|+||+|.+.+. ...
T Consensus 91 Ek~~~~~-~~~~~GirV~~~TgD~~~~~---~~l~~~~ViVtT~EK~Dsl~R~~~~-~~~~V~lvViDEiH~l~d~~RG~ 165 (766)
T COG1204 91 EKYEEFS-RLEELGIRVGISTGDYDLDD---ERLARYDVIVTTPEKLDSLTRKRPS-WIEEVDLVVIDEIHLLGDRTRGP 165 (766)
T ss_pred HHHHHhh-hHHhcCCEEEEecCCcccch---hhhccCCEEEEchHHhhHhhhcCcc-hhhcccEEEEeeeeecCCcccCc
Confidence 9999998 55777999999999987544 3346899999999999999998544 7788999999999999998 444
Q ss_pred hHHHHHHHHhhc
Q psy4275 168 KFFFFFFFLKYY 179 (182)
Q Consensus 168 ~~~~~~~~~~~~ 179 (182)
-......++++.
T Consensus 166 ~lE~iv~r~~~~ 177 (766)
T COG1204 166 VLESIVARMRRL 177 (766)
T ss_pred eehhHHHHHHhh
Confidence 444455555443
No 40
>KOG0336|consensus
Probab=99.90 E-value=9.5e-24 Score=162.07 Aligned_cols=166 Identities=39% Similarity=0.524 Sum_probs=144.7
Q ss_pred CCCccCCccC-CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC------CC
Q psy4275 1 MEDPIKSFTD-LKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED------PY 73 (182)
Q Consensus 1 ~~~~~~~~~~-~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~------~~ 73 (182)
+|.|.-+|++ |...+++.+.+.+.||..|+|+|.++||-+++|.+++.++.||+|||++++++.+..+... ..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 4677777765 4778999999999999999999999999999999999999999999999999887766543 24
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
++.+++++|+++|+.|+.-+.++. ..-+.+..+++|+.+..++...+..+.+|+++||+.|.++... +.++++.+.++
T Consensus 294 ~p~~lvl~ptreLalqie~e~~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYl 371 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYL 371 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEE
Confidence 678999999999999997666654 3337788888888888888889999999999999999999888 88899999999
Q ss_pred EEeccccccccCChh
Q psy4275 154 VLDEADRLSLMTSLK 168 (182)
Q Consensus 154 I~DE~h~~~~~~~~~ 168 (182)
|+||||.|++.++-.
T Consensus 372 VlDEADrMLDMgFEp 386 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEP 386 (629)
T ss_pred EecchhhhhcccccH
Confidence 999999999998744
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=6.8e-23 Score=166.22 Aligned_cols=150 Identities=22% Similarity=0.254 Sum_probs=113.7
Q ss_pred HHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccC
Q psy4275 22 QTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM 101 (182)
Q Consensus 22 ~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 101 (182)
..+|+..++|+|.++++.+.+|+++++++|||+|||++|+++++.. ++.++|++|+++|+.|+.+.++..
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~---- 74 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS---- 74 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----
Confidence 3579999999999999999999999999999999999999998753 457999999999999887777643
Q ss_pred CceEEEEEcCCchhhhhH----HhcCCCcEEEEChHHHHHHHhcCCCC-CCCCccEEEEeccccccccC--ChhHHHHHH
Q psy4275 102 NLRVSIITGGMDMVDQGK----ELAKKPHIVIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLSLMT--SLKFFFFFF 174 (182)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~-~~~~~~~iI~DE~h~~~~~~--~~~~~~~~~ 174 (182)
++.+..+.++....+... ...+..+|+++||+.+....+....+ ...+++++|+||||++.+|+ +......+.
T Consensus 75 gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~ 154 (470)
T TIGR00614 75 GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALG 154 (470)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHH
Confidence 677888877765443221 12346899999999975322111111 45778999999999999887 445555555
Q ss_pred HHhhcCC
Q psy4275 175 FLKYYIP 181 (182)
Q Consensus 175 ~~~~~~~ 181 (182)
.++..+|
T Consensus 155 ~l~~~~~ 161 (470)
T TIGR00614 155 SLKQKFP 161 (470)
T ss_pred HHHHHcC
Confidence 6666554
No 42
>KOG0329|consensus
Probab=99.89 E-value=3.4e-23 Score=150.47 Aligned_cols=156 Identities=35% Similarity=0.549 Sum_probs=143.8
Q ss_pred ccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 8 FTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 8 ~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
|.++=+.+++.+++...|+..|.+.|.+++|...-|-+++.++.+|-|||.++.++.+..+........++++|++++|+
T Consensus 44 frdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrela 123 (387)
T KOG0329|consen 44 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELA 123 (387)
T ss_pred hhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHH
Confidence 56777899999999999999999999999999999999999999999999999999999987766667899999999999
Q ss_pred HHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 88 YQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 88 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
-|+.++..++.+.. ++++.+..|+.+.......+.+.++|+|+||+.++.+.++ +.++++++..+|+|||+.|+.+
T Consensus 124 fqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 124 FQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHHHHHH
Confidence 99999999998887 4899999999998888888888999999999999999998 8889999999999999988754
No 43
>KOG0327|consensus
Probab=99.89 E-value=4.5e-23 Score=156.76 Aligned_cols=172 Identities=36% Similarity=0.519 Sum_probs=152.0
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
...+|++++|++++.+.+...||..|+.+|+.++.-+.+|.|+.+++++|+|||.++..+++..+.-.....++++++|+
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 46789999999999999999999999999999999999999999999999999999999999887655556689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh-cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL-AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
++|+.|..+..+.+....++++..+.|+...-.....+ ...++|+++||+++.+.++. ..+..+.+.++|+||+++|+
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~-~~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNR-GSLSTDGIKMFVLDEADEML 182 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcc-ccccccceeEEeecchHhhh
Confidence 99999999999999999999999999888765444333 44689999999999999988 46778889999999999999
Q ss_pred ccCChhHHHHHHHH
Q psy4275 163 LMTSLKFFFFFFFL 176 (182)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (182)
..++...+..++..
T Consensus 183 s~gfkdqI~~if~~ 196 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQE 196 (397)
T ss_pred ccchHHHHHHHHHH
Confidence 99998877766553
No 44
>KOG0332|consensus
Probab=99.89 E-value=3.9e-23 Score=156.81 Aligned_cols=172 Identities=31% Similarity=0.457 Sum_probs=146.2
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+++|++|+|.+++.+.+...+|..|+.+|+.++|.++.. +|.+.++.+|+|||.+|.+.++.+.......++++.++|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaP 168 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAP 168 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCc
Confidence 578999999999999999999999999999999999884 689999999999999999999999888777889999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
+++|+.|+-+.+.+.+++.+++..+...+...... +.+ ..+|+|+||+.+.+++...+.+.++.++.+|+|||+.|.
T Consensus 169 trELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi 245 (477)
T KOG0332|consen 169 TRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMI 245 (477)
T ss_pred hHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhh
Confidence 99999999999999999998888777655521111 111 358999999999999998888899999999999999999
Q ss_pred ccCChhHHHHHHHHhhcCC
Q psy4275 163 LMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (182)
+..... ..-.++++.+|
T Consensus 246 ~tqG~~--D~S~rI~~~lP 262 (477)
T KOG0332|consen 246 DTQGFQ--DQSIRIMRSLP 262 (477)
T ss_pred hccccc--ccchhhhhhcC
Confidence 866433 44455555555
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=5.4e-22 Score=169.74 Aligned_cols=165 Identities=23% Similarity=0.262 Sum_probs=123.3
Q ss_pred Ccc--CCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 7 SFT--DLKLNPWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 7 ~~~--~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+|+ .++.++.+...+++ +|+..++|.|.++++.++.|+++++.+|||+|||++|.++++.. ++.+|||+|+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPL 509 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 509 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCH
Confidence 454 57788888888865 79999999999999999999999999999999999999999864 4579999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc------CCCcEEEEChHHHHH---HHhcCCCC-CCCCccEE
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA------KKPHIVIATPGRLAD---HLDTCNTF-SLNRIKFL 153 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~T~~~l~~---~~~~~~~~-~~~~~~~i 153 (182)
++|+.+....+.. .+++...+.++.........+. ...+|+++||+++.. +++....+ ....+++|
T Consensus 510 iSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 510 VSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9998754333333 3788888888876544433222 468999999999852 22211111 23458899
Q ss_pred EEeccccccccC--ChhHHHHHHHHhhcCC
Q psy4275 154 VLDEADRLSLMT--SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 154 I~DE~h~~~~~~--~~~~~~~~~~~~~~~~ 181 (182)
||||||++.+|+ +......+..++..+|
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp 615 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFP 615 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCC
Confidence 999999999987 4454455555665554
No 46
>KOG4284|consensus
Probab=99.89 E-value=4.2e-23 Score=165.86 Aligned_cols=176 Identities=29% Similarity=0.403 Sum_probs=151.2
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+.+...|+.+-+...+...|+..++..|+++|..++|....+-+.|+++..|+|||.+|...+++.+..+...++.+|++
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~ 100 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVT 100 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEe
Confidence 44567889999999999999999999999999999999999999999999999999999999999887777778999999
Q ss_pred CCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
||++++.|+.+.+.+++..+ |.++.++.|++......-. .+.++|+||||+++.+++.. +.++.++++++|+||||.
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~r-lk~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIR-LKQTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADK 178 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhh-hhhceEEecCchHHHHHHHh-cCCCccceeEEEeccHHh
Confidence 99999999999999988754 8999999999986554444 35788999999999999988 888999999999999999
Q ss_pred ccccCChhHHHHHHHHhhcCC
Q psy4275 161 LSLMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ 181 (182)
+++.+.-. ..+..+...+|
T Consensus 179 L~~t~sfq--~~In~ii~slP 197 (980)
T KOG4284|consen 179 LMDTESFQ--DDINIIINSLP 197 (980)
T ss_pred hhchhhHH--HHHHHHHHhcc
Confidence 99854322 34444444444
No 47
>KOG0337|consensus
Probab=99.89 E-value=5.5e-23 Score=158.03 Aligned_cols=164 Identities=39% Similarity=0.574 Sum_probs=149.5
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTR 84 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~ 84 (182)
..|..+||+..+.+++.+.|+..|+|+|+..+|.++.+++.+..+-||+|||.++++++++.+.... .+.+++++.|++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptr 100 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTR 100 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcH
Confidence 5789999999999999999999999999999999999999999999999999999999999987654 467999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 85 ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 85 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+|+.|..+..+++++..+.+..++.|+-+..++...+..+++|+++||+.+.+...+ -.+.++.+.++||||++.+...
T Consensus 101 eLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve-m~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 101 ELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE-MTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh-eeccccceeeeeehhhhHHHhh
Confidence 999999999999999999999999988888887778888999999999999988776 4467889999999999999998
Q ss_pred CChhHH
Q psy4275 165 TSLKFF 170 (182)
Q Consensus 165 ~~~~~~ 170 (182)
++.+-+
T Consensus 180 gfqeql 185 (529)
T KOG0337|consen 180 GFQEQL 185 (529)
T ss_pred hhHHHH
Confidence 876543
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.88 E-value=1.2e-21 Score=163.06 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=115.8
Q ss_pred HHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 20 QCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 20 ~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
.|++ +|+.+++|.|.++++.+..|+++++++|||+|||++|.++++.. ++.++|++|+.+|+.|..+.++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 4543 79999999999999999999999999999999999999888753 457899999999998887777664
Q ss_pred ccCCceEEEEEcCCchhhhhH----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC--ChhHHHH
Q psy4275 99 KVMNLRVSIITGGMDMVDQGK----ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT--SLKFFFF 172 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~--~~~~~~~ 172 (182)
++.+..++++.+..+... ...+..+|+++||+.+...... ......+++++|+||||++..|+ +......
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~ 152 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQR 152 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHH
Confidence 678888888776544332 2235789999999998642221 12245678999999999999876 4455555
Q ss_pred HHHHhhcCC
Q psy4275 173 FFFLKYYIP 181 (182)
Q Consensus 173 ~~~~~~~~~ 181 (182)
+..++..+|
T Consensus 153 l~~l~~~~~ 161 (591)
T TIGR01389 153 LGSLAERFP 161 (591)
T ss_pred HHHHHHhCC
Confidence 656655554
No 49
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=1.6e-21 Score=162.33 Aligned_cols=160 Identities=23% Similarity=0.238 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 11 LKLNPWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 11 ~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
++.++...+.+++ +|+..++|.|.++++.+.+|+++++++|||+|||++|+++++.. .+.++|++|+++|+.|
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~d 80 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKD 80 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHH
Confidence 3455666666754 79999999999999999999999999999999999999988754 4479999999999999
Q ss_pred HHHHHHHhhccCCceEEEEEcCCchhhhhHH----hcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 90 IGDQFLVLGKVMNLRVSIITGGMDMVDQGKE----LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.+.++.. ++.+..+.+.......... ..+..+++++||+.+...... ..+...+++++|+||||++.+|+
T Consensus 81 qv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 81 QVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCcccccccc
Confidence 88777654 6777777766554332221 224578999999998632111 11234468999999999999876
Q ss_pred --ChhHHHHHHHHhhcCC
Q psy4275 166 --SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 166 --~~~~~~~~~~~~~~~~ 181 (182)
+......+..+++.+|
T Consensus 156 ~~fr~~y~~L~~l~~~~p 173 (607)
T PRK11057 156 HDFRPEYAALGQLRQRFP 173 (607)
T ss_pred CcccHHHHHHHHHHHhCC
Confidence 4444455666666554
No 50
>PRK09401 reverse gyrase; Reviewed
Probab=99.87 E-value=5.4e-21 Score=167.29 Aligned_cols=141 Identities=20% Similarity=0.239 Sum_probs=109.1
Q ss_pred HHHHHHHC-CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 17 LIRQCQTI-GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 17 i~~~l~~~-~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
+.+.+.+. |+ +|+++|..+++.+..|+++++++|||+|||..++. +...+.. .+.+++|++||++|+.|+++.++
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSLYLAK--KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEEeccHHHHHHHHHHHH
Confidence 33445443 55 89999999999999999999999999999975443 3333322 26799999999999999999999
Q ss_pred HhhccCCceEEEEEcCCch--h---hhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 96 VLGKVMNLRVSIITGGMDM--V---DQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~--~---~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
.+....++.+..+.|+... . .....+. ++++|+|+||+.+.+.++. +...+++++|+||||+|+++
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE---LPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh---ccccccCEEEEEChHHhhhc
Confidence 9999888888777765432 1 1122223 4689999999999988763 34566999999999999973
No 51
>KOG0952|consensus
Probab=99.87 E-value=4.3e-22 Score=166.66 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=129.6
Q ss_pred CCCCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccC-------CCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 24 IGVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCED-------PYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~-------~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
+++.+++..|.+++|...+ +.|.++|+|||+|||..|++.+++.+.++ .++.+++||+|+++||.++.+.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 5677899999999999876 78999999999999999999999877652 236789999999999999999998
Q ss_pred HhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCC--CCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 96 VLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCN--TFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
+.+..+|++|..++|++...... ..+++|+|+||+++.-.-+++. ...++.++++|+||+|.+-++.+.-.....
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHH
Confidence 88888899999999998765543 3479999999999966555543 235778999999999999999988888888
Q ss_pred HHHhhc
Q psy4275 174 FFLKYY 179 (182)
Q Consensus 174 ~~~~~~ 179 (182)
.|..+.
T Consensus 263 aRtlr~ 268 (1230)
T KOG0952|consen 263 ARTLRL 268 (1230)
T ss_pred HHHHHH
Confidence 887754
No 52
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.9e-21 Score=161.70 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=125.1
Q ss_pred CCCCCHHHHHHHH-----HCCCCCC---hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 10 DLKLNPWLIRQCQ-----TIGVKTP---TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 10 ~~~l~~~i~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
.|.+..++.+.+. ..|+..| +|+|.++++.+..+++.+.+++||+|||+++.++++..+... ..++||+
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IVT 142 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLVT 142 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEEe
Confidence 3455556655554 4566666 999999999999999999999999999999999999877653 2489999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCCCCCC-------CccEE
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNTFSLN-------RIKFL 153 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~~~~~-------~~~~i 153 (182)
|++.||.|.++++..+.+.++++++++.|+.+...+...+ +++|+|+||+.+ .++++. +.+..+ .+.++
T Consensus 143 pTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 143 VNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGFYFA 219 (970)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccccEE
Confidence 9999999999999999999999999999998877665554 589999999999 999987 444333 55899
Q ss_pred EEeccccccccC
Q psy4275 154 VLDEADRLSLMT 165 (182)
Q Consensus 154 I~DE~h~~~~~~ 165 (182)
|+||||.|+-+.
T Consensus 220 IIDEADsmLiDE 231 (970)
T PRK12899 220 IIDEVDSILIDE 231 (970)
T ss_pred EEechhhhhhhc
Confidence 999999998644
No 53
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.87 E-value=3.8e-21 Score=161.77 Aligned_cols=139 Identities=25% Similarity=0.380 Sum_probs=113.3
Q ss_pred HHHHHHH-HHCCCCCChHHHHhhhhhhhCC------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 15 PWLIRQC-QTIGVKTPTEIQKAIIPHVLND------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 15 ~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
..+.+.+ ..+++ +|++.|+++++.+.++ .+.+++++||+|||.+++++++..+.+ +.++++++||++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 3444444 55666 7999999999999885 378999999999999999999887654 67999999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCchhhhhH---Hhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 88 YQIGDQFLVLGKVMNLRVSIITGGMDMVDQGK---ELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 88 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
.|+++.++++.+..++++..++|+.+..+... .+. ++++|+|+||+.+.+ ...+++++++|+||+|++..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrfg~ 397 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRFGV 397 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhhhH
Confidence 99999999999999999999999987544332 222 369999999987632 23577899999999999754
No 54
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.86 E-value=4.9e-21 Score=160.04 Aligned_cols=140 Identities=23% Similarity=0.349 Sum_probs=113.6
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhCC------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 15 PWLIRQCQTIGVKTPTEIQKAIIPHVLND------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 15 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
..+.+.+..+++ ++++.|+++++.+.++ .+.+++++||+|||.+++++++..+.+ +.+++|++||++|+.
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~ 298 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAE 298 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHH
Confidence 334455667777 8999999999998874 258999999999999999888887655 668999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCchhhhhHH---h-cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 89 QIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE---L-AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 89 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
|+++.+++++...++++..++|+......... + .++++|+|+||+.+.+ ...+++++++|+||+|++...
T Consensus 299 Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg~~ 372 (630)
T TIGR00643 299 QHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFGVE 372 (630)
T ss_pred HHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhccHH
Confidence 99999999999889999999998875543222 2 2367999999987642 235678999999999996543
No 55
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.86 E-value=4.4e-21 Score=152.76 Aligned_cols=171 Identities=22% Similarity=0.230 Sum_probs=149.0
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
+.+++.+++.+.+.+...|+.++.|.|..+++. ++.|.|.+++.+|++|||++..++-+..+... +.+.++++|..+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPLVA 272 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLVA 272 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehhHH
Confidence 567889999999999999999999999999977 78899999999999999999999999888876 568999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchhhhh----HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 86 LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQG----KELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
|++|-++.++.-...+++++..-.|........ ..-..+++|+|+|.+-+.++++.. ..+.+++.+|+||+|.+
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg--~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG--KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC--CcccccceEEeeeeeec
Confidence 999999999998899999998888765543322 122236799999999999999884 46889999999999999
Q ss_pred cc-cCChhHHHHHHHHhhcCC
Q psy4275 162 SL-MTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 162 ~~-~~~~~~~~~~~~~~~~~~ 181 (182)
.+ ....+..-++.++++++|
T Consensus 351 ~deERG~RLdGLI~RLr~l~~ 371 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFP 371 (830)
T ss_pred cchhcccchhhHHHHHHHhCC
Confidence 98 457888899999999988
No 56
>PRK14701 reverse gyrase; Provisional
Probab=99.86 E-value=1e-20 Score=169.04 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=112.8
Q ss_pred HHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 15 PWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 15 ~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
+++.+.+.+ .|+ +|++.|.++++.++.|+++++++|||+|||.+++.+.+.... .+.+++|++||++|+.|+.+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~ 141 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEK 141 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHH
Confidence 344555655 688 799999999999999999999999999999976655544322 256899999999999999999
Q ss_pred HHHhhccC--CceEEEEEcCCchhhhhH---Hhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 94 FLVLGKVM--NLRVSIITGGMDMVDQGK---ELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 94 ~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
++.+.... ++++..++|+.+..+... .+. ++++|+|+||+.+.+.+... ...+++++|+||||+|+.+
T Consensus 142 l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l---~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 142 IESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM---KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH---hhCCCCEEEEECceecccc
Confidence 99988775 456778888877654432 233 35899999999998876542 1267899999999999874
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.86 E-value=1.3e-20 Score=161.57 Aligned_cols=142 Identities=22% Similarity=0.229 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHhhhhhhhCC------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 11 LKLNPWLIRQCQ-TIGVKTPTEIQKAIIPHVLND------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 11 ~~l~~~i~~~l~-~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
++.+....+.+. .+++ .++|.|.++++.+.++ .+.+++++||+|||.+++.+++..+.+ +.+++|++||
T Consensus 434 ~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT 509 (926)
T TIGR00580 434 FPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPT 509 (926)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCc
Confidence 345555555554 4677 6999999999999874 689999999999999999998887765 5699999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH---hc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE---LA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
++|+.|.++.+++++..+++++..++|..+..+.... +. ++++|+|+||..+ . +.+.+++++++|+||+|
T Consensus 510 ~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEah 583 (926)
T TIGR00580 510 TLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQ 583 (926)
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeeccc
Confidence 9999999999999988889999999887664433322 22 3689999999533 2 33568899999999999
Q ss_pred ccc
Q psy4275 160 RLS 162 (182)
Q Consensus 160 ~~~ 162 (182)
++.
T Consensus 584 rfg 586 (926)
T TIGR00580 584 RFG 586 (926)
T ss_pred ccc
Confidence 964
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=2.1e-20 Score=157.31 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=113.1
Q ss_pred HHHHHH-CCCCCChHHHHhhhhhhhCCC-cEEEECCCCChHHHHHHHHHHHhhccCCCCe-eEEEEcCCHHHHHHHHHHH
Q psy4275 18 IRQCQT-IGVKTPTEIQKAIIPHVLNDE-DCIGCAKTGSGKTLAFALPILQKWCEDPYGI-FALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 18 ~~~l~~-~~~~~~~~~Q~~~~~~~~~~~-~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~-~~lil~p~~~l~~q~~~~~ 94 (182)
.+.+.. .|+. |+|+|.++++.++.|+ ..++++|||+|||.++.++++.. ..+...+ +.++++|+++|++|+++.+
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHH
Confidence 334443 3775 9999999999999988 57778999999999765555533 2222233 5556889999999999999
Q ss_pred HHhhccC-----------------------CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC-------
Q psy4275 95 LVLGKVM-----------------------NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT------- 144 (182)
Q Consensus 95 ~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~------- 144 (182)
+++.+.+ ++++..+.|+.+...+...+..+++|+|+|++.+ .+...
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~ 158 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCG 158 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccccc
Confidence 9988765 4888999999998888888888999999996544 33211
Q ss_pred -----C---CCCCccEEEEeccccccccCChhHHHHHHH
Q psy4275 145 -----F---SLNRIKFLVLDEADRLSLMTSLKFFFFFFF 175 (182)
Q Consensus 145 -----~---~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~ 175 (182)
+ .+++++++|+|||| ++.++......+..
T Consensus 159 ~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~ 195 (844)
T TIGR02621 159 FKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMN 195 (844)
T ss_pred cccccchhhhhccceEEEEehhh--hccccHHHHHHHHH
Confidence 1 26789999999999 56677666555555
No 59
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.85 E-value=4.1e-20 Score=161.95 Aligned_cols=142 Identities=20% Similarity=0.204 Sum_probs=109.2
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 16 WLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 16 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
++.+.+.+.....|+++|..+++.+..|+++++++|||+|||..+ +++...+... +++++|++||++|+.|+++.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAKK--GKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHH
Confidence 344445544445899999999999999999999999999999844 4444433322 6799999999999999999999
Q ss_pred HhhccCCceEE---EEEcCCchhhhhH---Hhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 96 VLGKVMNLRVS---IITGGMDMVDQGK---ELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 96 ~~~~~~~~~~~---~~~~~~~~~~~~~---~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
.+....+++.. .++|+.+..++.. .+. ++++|+|+||+.+.+.+.... . +++++|+||||+|+++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---P-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---C-CCCEEEEeChHhhhhc
Confidence 99887776543 4678776554322 222 358999999999988876522 2 7899999999999983
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.84 E-value=2.8e-20 Score=151.94 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=98.7
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVS 106 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 106 (182)
..|+++|.++++.+..+++.++++|||+|||.++...+ ....++. ..+++|++|+++|++|+.+.++++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~~-~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLENY-EGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhcC-CCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 48999999999999998899999999999999865432 2223322 348999999999999999999987654344454
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHH
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFF 170 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~ 170 (182)
.+.++.... .+.+|+|+|++.+.+.... .+++++++|+||||++.+..+...+
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~~~~~~~~~il 243 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHLFTGKSLTSII 243 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhcccchhHHHHH
Confidence 454444321 3578999999998764432 3678999999999999876554433
No 61
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.83 E-value=2.1e-19 Score=157.07 Aligned_cols=138 Identities=25% Similarity=0.235 Sum_probs=110.7
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhCC------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 15 PWLIRQCQTIGVKTPTEIQKAIIPHVLND------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 15 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
.+..+....+++ .+++.|.++++.+..+ .+.+++++||+|||.+++.++...+.. +.+++|++||++|+.
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~ 663 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQ 663 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 344455566777 7999999999999886 789999999999999988776665443 679999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 89 QIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 89 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
|+++.+++.+...++++..++|..+..++...+. +.++|+|+||+.+ . +.+.+++++++|+||+|++.
T Consensus 664 Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrfG 735 (1147)
T PRK10689 664 QHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRFG 735 (1147)
T ss_pred HHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhcc
Confidence 9999999888878889988888777655443332 4689999999743 2 23457789999999999983
No 62
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.83 E-value=6.5e-19 Score=126.54 Aligned_cols=142 Identities=36% Similarity=0.456 Sum_probs=110.9
Q ss_pred CCCCCChHHHHhhhhhhhCC-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 24 IGVKTPTEIQKAIIPHVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.++..++++|.+++..+... ++.++.++||+|||.++..+++..+...+ ..++++++|+.+++.|+.+.+........
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 45678999999999999988 99999999999999998888888777654 35899999999999999988888776655
Q ss_pred -ceEEEEEcCCchhhhhHHhcCCC-cEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 103 -LRVSIITGGMDMVDQGKELAKKP-HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 103 -~~~~~~~~~~~~~~~~~~~~~~~-~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
.....+.+..... ......++. +++++|++.+.+.... ......+++++|+||+|++.......
T Consensus 83 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~t~~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 83 LKVVGLYGGDSKRE-QLRKLESGKTDILVTTPGRLLDLLEN-DLLELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred eEEEEEeCCcchHH-HHHHHhcCCCCEEEeChHHHHHHHHc-CCcCHhHCCEEEEECHHHHhcCCcHH
Confidence 3444444433333 333334444 9999999999999887 33556778899999999999754333
No 63
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.83 E-value=7.7e-20 Score=161.46 Aligned_cols=134 Identities=25% Similarity=0.273 Sum_probs=107.2
Q ss_pred EECCCCChHHHHHHHHHHHhhccC----------CCCeeEEEEcCCHHHHHHHHHHHHHhh------------ccCCceE
Q psy4275 48 GCAKTGSGKTLAFALPILQKWCED----------PYGIFALVLTPTRELAYQIGDQFLVLG------------KVMNLRV 105 (182)
Q Consensus 48 i~~~tg~GKT~~~~~~~~~~~~~~----------~~~~~~lil~p~~~l~~q~~~~~~~~~------------~~~~~~~ 105 (182)
+++|||||||.++.++++..+..+ ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 478999999999999999888643 135799999999999999988876421 1247899
Q ss_pred EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC-ChhHHHHHHHHhhcCC
Q psy4275 106 SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT-SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~-~~~~~~~~~~~~~~~~ 181 (182)
...+|+++..++...+.+.++|+|+||+++..++.+.....++++++||+||+|.+.+.. ...+...+.+++.+++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~ 157 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH 157 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC
Confidence 999999998877777777899999999999998865333468999999999999999764 4455566667766553
No 64
>PRK13766 Hef nuclease; Provisional
Probab=99.82 E-value=6e-19 Score=151.03 Aligned_cols=139 Identities=24% Similarity=0.311 Sum_probs=112.5
Q ss_pred CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
+..++++||.+++...+.+ +.++++|||+|||.++++.+...+. .+ +.+++|++|+++|++|+.+.++.+....+.+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~~-~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-KK-GGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-hC-CCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 4457999999999888776 8999999999999998888877663 22 5689999999999999999998876654567
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
+..++|+.....+ ...+.+++|+|+||+.+...+.. +.+.+.+++++||||||++.......
T Consensus 89 v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~ 150 (773)
T PRK13766 89 IVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYV 150 (773)
T ss_pred EEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHH
Confidence 8888888766543 34456789999999999877755 55678889999999999987655443
No 65
>KOG0344|consensus
Probab=99.82 E-value=7.9e-20 Score=145.56 Aligned_cols=170 Identities=36% Similarity=0.500 Sum_probs=135.3
Q ss_pred CCCccCCccC----CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-----
Q psy4275 1 MEDPIKSFTD----LKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED----- 71 (182)
Q Consensus 1 ~~~~~~~~~~----~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~----- 71 (182)
+|+++..|++ +..+..+.+.+...+|..|+|.|.++++.+..+++++.|+|||+|||+++.++++..+...
T Consensus 127 ~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~ 206 (593)
T KOG0344|consen 127 LPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKH 206 (593)
T ss_pred CCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccC
Confidence 4788889987 5789999999999999999999999999999999999999999999999999999887553
Q ss_pred CCCeeEEEEcCCHHHHHHHHHHHHHhh--ccCCceEEEEEcCCchhh-hhHHhcCCCcEEEEChHHHHHHHhcCC-CCCC
Q psy4275 72 PYGIFALVLTPTRELAYQIGDQFLVLG--KVMNLRVSIITGGMDMVD-QGKELAKKPHIVIATPGRLADHLDTCN-TFSL 147 (182)
Q Consensus 72 ~~~~~~lil~p~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Ilv~T~~~l~~~~~~~~-~~~~ 147 (182)
..+.+++|+.|+++|+.|++.+..++. +..+.+...........+ ........++++++||-.+...+.... .+.+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 346899999999999999999999887 444444443333211111 111222367899999999999887632 3588
Q ss_pred CCccEEEEecccccccc-CChhHH
Q psy4275 148 NRIKFLVLDEADRLSLM-TSLKFF 170 (182)
Q Consensus 148 ~~~~~iI~DE~h~~~~~-~~~~~~ 170 (182)
+.+.++|+||+|.+.+. .+.+-.
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Ql 310 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQL 310 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHH
Confidence 89999999999999998 444433
No 66
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.1e-19 Score=140.45 Aligned_cols=142 Identities=24% Similarity=0.289 Sum_probs=119.6
Q ss_pred CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 24 IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+..+++.||.......+.+ |++++.|||.|||++++..+..++...+ + ++|+++||+-|+.|.++.+.++..--..
T Consensus 11 p~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~ 87 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPED 87 (542)
T ss_pred cccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChh
Confidence 34558999999998887765 8999999999999999988888877764 3 8999999999999999999998877667
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHH
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFF 170 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~ 170 (182)
.++.++|......+. ..|++.+|+|+||+.+.+=+.. +.+++.++.++||||||+--.+..+-+.
T Consensus 88 ~i~~ltGev~p~~R~-~~w~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~V 152 (542)
T COG1111 88 EIAALTGEVRPEERE-ELWAKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFV 152 (542)
T ss_pred heeeecCCCChHHHH-HHHhhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHH
Confidence 888999988765544 4467889999999999888877 7889999999999999997766654443
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.78 E-value=2.1e-18 Score=144.02 Aligned_cols=135 Identities=21% Similarity=0.195 Sum_probs=104.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.++|+|.+++..+.-.+..+++++||+|||+++.++++..... +..++|++|++.|+.|+++++..+.+.+|+++..
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~ 144 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSL 144 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 4566777666665555557999999999999999998766555 4579999999999999999999999999999988
Q ss_pred EEcCCc---hhhhhHHhcCCCcEEEEChHHH-HHHHhcC-----CCCCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMD---MVDQGKELAKKPHIVIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~---~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-----~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
..++.. .....+....+++|+++||+.+ .++++.. ....++.+.++|+||||.|+-+.
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe 211 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS 211 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc
Confidence 776522 2222333345799999999999 5666432 22346788999999999997544
No 68
>KOG0354|consensus
Probab=99.78 E-value=3.7e-18 Score=140.77 Aligned_cols=151 Identities=21% Similarity=0.170 Sum_probs=116.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 14 NPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 14 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
++.....+.-.....+++||.+.....+ ++|+++++|||+|||.++...+.+++...+. .++++++|++-|+.|....
T Consensus 48 ~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~ 125 (746)
T KOG0354|consen 48 DESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIAC 125 (746)
T ss_pred ChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHH
Confidence 3333333333334479999999998878 9999999999999999999999998877664 5899999999999998866
Q ss_pred HHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 94 FLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
+...+.. ..+....|+.........+++..+|++.||+.+.+-+++...-.++.+.++||||||+-.....+.
T Consensus 126 ~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~ 198 (746)
T KOG0354|consen 126 FSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYN 198 (746)
T ss_pred HhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHH
Confidence 6666554 556566666444444457778899999999999988877332236889999999999988766444
No 69
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.77 E-value=1e-17 Score=131.63 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=95.7
Q ss_pred HHHhhhhhhhCCCc--EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccC----CceE
Q psy4275 32 IQKAIIPHVLNDED--CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM----NLRV 105 (182)
Q Consensus 32 ~Q~~~~~~~~~~~~--~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~----~~~~ 105 (182)
+|.++++.+.++++ +++++|||+|||.+++++++.. +.++++++|+++|++++++.++.+...+ +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 58999999998764 7889999999999998888752 3478999999999999999888876433 4566
Q ss_pred EEEEcCCchh--h------------------hhHHhcCCCcEEEEChHHHHHHHhcCC---C----CCCCCccEEEEecc
Q psy4275 106 SIITGGMDMV--D------------------QGKELAKKPHIVIATPGRLADHLDTCN---T----FSLNRIKFLVLDEA 158 (182)
Q Consensus 106 ~~~~~~~~~~--~------------------~~~~~~~~~~Ilv~T~~~l~~~~~~~~---~----~~~~~~~~iI~DE~ 158 (182)
..++|....+ . +.....+.+.|+++||+.+..+++.+. . ..+.+++++|+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666653221 0 011113467899999999987665421 1 12478999999999
Q ss_pred ccccccCCh
Q psy4275 159 DRLSLMTSL 167 (182)
Q Consensus 159 h~~~~~~~~ 167 (182)
|.+..+...
T Consensus 155 H~~~~~~~~ 163 (357)
T TIGR03158 155 HLYDAKQLV 163 (357)
T ss_pred cccCcccch
Confidence 998865543
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=4.9e-18 Score=141.18 Aligned_cols=131 Identities=24% Similarity=0.228 Sum_probs=108.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.|++.|..+...+..|+ +.+++||+|||+++.++++-.... +..+.+++|+..||.|.++++..+.+.+|+++++
T Consensus 56 ~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 56 RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 67888888877776665 999999999999999998644444 4479999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.|+.+...+...+ .++|+++||..+ .++++..- ...++.+.++|+||+|.|+-+.
T Consensus 131 i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDe 192 (745)
T TIGR00963 131 ILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDE 192 (745)
T ss_pred EeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHh
Confidence 99988765443333 589999999999 88987731 2467889999999999998744
No 71
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.74 E-value=9.7e-17 Score=109.07 Aligned_cols=122 Identities=42% Similarity=0.536 Sum_probs=96.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAK 123 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (182)
++.++.+|||+|||..++..+........ ..++++++|+.+++.++.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~-~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK-GGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc-CCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 46899999999999998888777665532 458999999999999998888887765 6777777777665555445567
Q ss_pred CCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 124 KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 124 ~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
..+|+++|++.+........ ......+++|+||+|.+.......
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred CCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchHH
Confidence 88999999999988876632 345568899999999998877544
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=4.1e-17 Score=137.30 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=109.1
Q ss_pred CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
|. .|++.|..+...+..|+ +.++.||+|||+++.++++..... +..+.+++|+..||.|.++++..+.+.+|++
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~ 149 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGLT 149 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 44 78888988888777665 999999999999999998866665 6689999999999999999999999999999
Q ss_pred EEEEEcCCc-hhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEeccccccccC
Q psy4275 105 VSIITGGMD-MVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 105 ~~~~~~~~~-~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
++++.|+.+ ..+.. . ..+++|+++||+.+ .++++..- ....+.+.++|+||+|.|+=+.
T Consensus 150 v~~i~g~~~~~~~r~-~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 150 VGLNFSDIDDASEKK-A-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred EEEEeCCCCcHHHHH-H-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 999999887 33332 2 34689999999999 56665421 1355778999999999998554
No 73
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=2.3e-17 Score=132.83 Aligned_cols=135 Identities=21% Similarity=0.233 Sum_probs=99.0
Q ss_pred CCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 27 KTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
..++++|++++..+.+ ++..+++.|||+|||.+++..+... +.+++||+|+.+|+.||++.+.......
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 3699999999999988 8899999999999999987766665 3359999999999999986666554431
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHH
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
..++.+.|+..... ...|.|+|.+.+...- ....+..+.+++||+|||||+.+..+..+...+...
T Consensus 108 ~~~g~~~~~~~~~~-------~~~i~vat~qtl~~~~-~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~ 173 (442)
T COG1061 108 DEIGIYGGGEKELE-------PAKVTVATVQTLARRQ-LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA 173 (442)
T ss_pred cccceecCceeccC-------CCcEEEEEhHHHhhhh-hhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcc
Confidence 23344444332111 1469999999997642 112223447899999999999998887777665543
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=7.8e-17 Score=133.16 Aligned_cols=131 Identities=23% Similarity=0.208 Sum_probs=109.8
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.|+|.|..+++.+..|+ +.++.||+|||+++.++++..... +..++|++|++.||.|.++++..+.+.+|+++++
T Consensus 103 ~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 79999999999999988 999999999999999999987665 6689999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCC------------------------CCCCCccEEEEecccccc
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNT------------------------FSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~------------------------~~~~~~~~iI~DE~h~~~ 162 (182)
+.|+.+.. .+....+++|+++|+..+ .++++..-. .-.+.+.+.|+||+|.++
T Consensus 178 i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 178 VVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 99987643 334445789999999998 566655311 123557899999999987
Q ss_pred ccC
Q psy4275 163 LMT 165 (182)
Q Consensus 163 ~~~ 165 (182)
=+.
T Consensus 256 iDe 258 (656)
T PRK12898 256 IDE 258 (656)
T ss_pred ecc
Confidence 544
No 75
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=3.5e-17 Score=136.63 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=95.5
Q ss_pred CChHHHHhhhhhhhC-C--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 28 TPTEIQKAIIPHVLN-D--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
.++|||++++..+.. + ++.++++|||+|||++++..+... +.++||+||+..|++||.+.++++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 589999999988764 3 478999999999999987665543 3479999999999999999999886544456
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC-------CCCCCCCccEEEEeccccccccCChhH
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC-------NTFSLNRIKFLVLDEADRLSLMTSLKF 169 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-------~~~~~~~~~~iI~DE~h~~~~~~~~~~ 169 (182)
+..+.|+... .......|+|+|++++.....+. ..+....++++|+||||++.+..+.+.
T Consensus 329 I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~i 395 (732)
T TIGR00603 329 ICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRV 395 (732)
T ss_pred EEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHH
Confidence 6666665322 11235789999999875432211 112335688999999999876555443
No 76
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.73 E-value=9.9e-17 Score=134.99 Aligned_cols=122 Identities=23% Similarity=0.288 Sum_probs=97.7
Q ss_pred CChHHHHhhhhhhhCC---CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 28 TPTEIQKAIIPHVLND---EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~---~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
.+++.|.++++.+.++ ++.++.++||+|||.+++.++...+.. +.++++++|+++|+.|+.+.+++. ++.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~---fg~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRAR---FGAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHH---hCCC
Confidence 5899999999999873 789999999999999998776665544 568999999999999998888764 3578
Q ss_pred EEEEEcCCchhhhhHH----hcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 105 VSIITGGMDMVDQGKE----LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
+..++|+.+..+.... ..++.+|+|+|+..+. ..++++++||+||+|...-
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCcccc
Confidence 8889988765443322 2356899999987652 3477899999999998654
No 77
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=6.6e-17 Score=136.41 Aligned_cols=131 Identities=24% Similarity=0.245 Sum_probs=105.7
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+.+.|....-.+.. .-+.+++||+|||+++.++++..+.. +..+.|++|++.||.|.++++..+.+.+|+++++
T Consensus 82 ~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 455555554444433 45889999999999999999977765 4469999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCCCCC-----CCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNTFSL-----NRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~~~~-----~~~~~iI~DE~h~~~~~~ 165 (182)
+.|+.+.......+ .++|+++||+.+ .++++....+.+ +.+.++|+||+|.|+-+.
T Consensus 157 i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDe 218 (896)
T PRK13104 157 IYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDE 218 (896)
T ss_pred EeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhc
Confidence 99987765554443 689999999999 999987433433 588999999999998544
No 78
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.8e-17 Score=132.92 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=116.8
Q ss_pred HHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 19 RQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 19 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
..|++ +|+..+++-|.+++..+.++++.++..|||+||++||.++.+-. .+-+|||.|..+|.....+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHc
Confidence 44544 68999999999999999999999999999999999999998876 347999999999955444444333
Q ss_pred hccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC--ChhHHH
Q psy4275 98 GKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT--SLKFFF 171 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~--~~~~~~ 171 (182)
|+.+..+++..+..++...+ ....+++..+|+.+..--.. +.+.--+++++++|||||+..|+ ++....
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~ 155 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDYR 155 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhHH
Confidence 78888888876655444332 23578999999998542111 11123457899999999999997 888888
Q ss_pred HHHHHhhcCC
Q psy4275 172 FFFFLKYYIP 181 (182)
Q Consensus 172 ~~~~~~~~~~ 181 (182)
.+..++..+|
T Consensus 156 ~lg~l~~~~~ 165 (590)
T COG0514 156 RLGRLRAGLP 165 (590)
T ss_pred HHHHHHhhCC
Confidence 8888887765
No 79
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.70 E-value=1.1e-16 Score=114.21 Aligned_cols=132 Identities=22% Similarity=0.247 Sum_probs=89.9
Q ss_pred CChHHHHhhhhhhhC-------CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 28 TPTEIQKAIIPHVLN-------DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-------~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
+++++|.+++..+.+ .++.++.+|||+|||.+++..+..... ++++++|+.++++|+.+.++.+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 589999999988874 589999999999999998755555433 7999999999999999888665443
Q ss_pred CCceEE-----------EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC----------CCCCCccEEEEeccc
Q psy4275 101 MNLRVS-----------IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT----------FSLNRIKFLVLDEAD 159 (182)
Q Consensus 101 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~----------~~~~~~~~iI~DE~h 159 (182)
...... ...................+++++|.+.+......... ......+++|+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 211100 00111111122223345778999999999887654211 133456899999999
Q ss_pred cccccC
Q psy4275 160 RLSLMT 165 (182)
Q Consensus 160 ~~~~~~ 165 (182)
++.+..
T Consensus 157 ~~~~~~ 162 (184)
T PF04851_consen 157 HYPSDS 162 (184)
T ss_dssp CTHHHH
T ss_pred hcCCHH
Confidence 987766
No 80
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.69 E-value=2.6e-16 Score=134.30 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=114.4
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
..++ .+.++|++++..+..+.++++++|||+|||+++.+++...+.+ +.+++|.+|.++|.+|.+..+...+....
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---GQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---CCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3454 7999999999999999999999999999999998888877766 45799999999999999877666555433
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
--+++++|+.+ +..++.++|.|.+.+.+++-. +...+..+..|||||+|.|.+....-.|+..
T Consensus 191 ~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~ 253 (1041)
T COG4581 191 DMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEV 253 (1041)
T ss_pred hhccceeccee-------eCCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHH
Confidence 34577788774 456788999999999998877 5667889999999999999998866655544
No 81
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.66 E-value=2.1e-15 Score=128.73 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=94.8
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH-hhccCCceEEEE
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV-LGKVMNLRVSII 108 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~ 108 (182)
...-.+.+..+.++++++++++||+|||+++..++++.... +++++++.|++.++.|+++.+.. +....+..+++.
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 33445566677778899999999999999999988876433 34899999999999999888754 555567777776
Q ss_pred EcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 109 TGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.++.+. ..++.+|+|+||+.+++++... ..++++++||+||+|+.
T Consensus 84 vr~~~~------~~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER 128 (812)
T PRK11664 84 MRAESK------VGPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHER 128 (812)
T ss_pred ecCccc------cCCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCcc
Confidence 654432 1235689999999999988763 36889999999999983
No 82
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.66 E-value=5.1e-15 Score=126.28 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=95.7
Q ss_pred HHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH-HhhccCCceEEEEE
Q psy4275 31 EIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL-VLGKVMNLRVSIIT 109 (182)
Q Consensus 31 ~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~~~ 109 (182)
.+-.+.+..+.++++++++++||+|||+.+..++++.... +++++++.|++.++.|+++.+. .+....|..|++..
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 3445566677778899999999999999999999887532 4589999999999999998875 45555566676554
Q ss_pred cCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc-ccccC
Q psy4275 110 GGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR-LSLMT 165 (182)
Q Consensus 110 ~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~-~~~~~ 165 (182)
+..+ ...++.+|+|+|++.+++.++.. ..++++++||+||+|+ +.+.+
T Consensus 82 r~~~------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~D 130 (819)
T TIGR01970 82 RGEN------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDAD 130 (819)
T ss_pred cccc------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccc
Confidence 4332 22346789999999999988763 3688999999999995 44433
No 83
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.66 E-value=2.1e-15 Score=126.02 Aligned_cols=127 Identities=14% Similarity=0.046 Sum_probs=92.0
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHH---------HHHHHhhc---cCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFA---------LPILQKWC---EDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~---------~~~~~~~~---~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
...|.++++.+.++++++++|+||+|||.+.. ++.+..+. .+..+.++++++|+++++.|+.+.+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999998732 22233221 1223568999999999999998888765
Q ss_pred hcc---CCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 98 GKV---MNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 98 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
... .+.++....|+.... .........+|+|+|++. ....+++++++|+||+|++...+
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~-~~~t~~k~~~Ilv~T~~L--------~l~~L~~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDE-LINTNPKPYGLVFSTHKL--------TLNKLFDYGTVIIDEVHEHDQIG 307 (675)
T ss_pred hCccccCCceEEEEECCcchH-HhhcccCCCCEEEEeCcc--------cccccccCCEEEccccccCccch
Confidence 543 356677888887632 112223367899999652 11247789999999999998766
No 84
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.65 E-value=1.7e-15 Score=123.68 Aligned_cols=147 Identities=24% Similarity=0.334 Sum_probs=118.3
Q ss_pred CCCCHHHHHHH-HHCCCCCChHHHHhhhhhhhCC------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 11 LKLNPWLIRQC-QTIGVKTPTEIQKAIIPHVLND------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 11 ~~l~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
++.+.++.+.+ ....| +++..|++++..+..+ -+-+++|..|||||++++++++....+ |.++...+||
T Consensus 245 ~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPT 320 (677)
T COG1200 245 LPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPT 320 (677)
T ss_pred CCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccH
Confidence 45566655555 55666 8999999999988762 378999999999999999999988777 7799999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH---hc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE---LA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
.-||+|.++.+.++++.+|++|..+.|......+... +. +..+|+|||..-+ +. ...+++++++|+||-|
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd--~V~F~~LgLVIiDEQH 394 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QD--KVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hc--ceeecceeEEEEeccc
Confidence 9999999999999999999999999998765444333 23 3589999996543 32 3467889999999999
Q ss_pred cccccCCh
Q psy4275 160 RLSLMTSL 167 (182)
Q Consensus 160 ~~~~~~~~ 167 (182)
++......
T Consensus 395 RFGV~QR~ 402 (677)
T COG1200 395 RFGVHQRL 402 (677)
T ss_pred cccHHHHH
Confidence 98765543
No 85
>KOG0951|consensus
Probab=99.64 E-value=9.9e-16 Score=130.92 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCC--------CeeEEEEcCC
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPY--------GIFALVLTPT 83 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--------~~~~lil~p~ 83 (182)
++++-..++ +|...++++|......... ..|.++|||||+|||.++++.+++.+..+.. ..+++|++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444444444 3556799999999988766 6799999999999999999999998866422 3589999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCC-CCCccEEEEecccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFS-LNRIKFLVLDEADRLS 162 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~-~~~~~~iI~DE~h~~~ 162 (182)
++|+.++...+.+....+|++|...+|+.....+ -..+.+|+||||+++.-.-++.+... .+-++++|+||+|.+-
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhh---hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999998754332 13478999999999977766644432 3357899999999886
Q ss_pred ccCChhHHH
Q psy4275 163 LMTSLKFFF 171 (182)
Q Consensus 163 ~~~~~~~~~ 171 (182)
++.+.....
T Consensus 451 DdRGpvLES 459 (1674)
T KOG0951|consen 451 DDRGPVLES 459 (1674)
T ss_pred cccchHHHH
Confidence 666544433
No 86
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.64 E-value=9.5e-15 Score=126.14 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=73.3
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhh----hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 14 NPWLIRQCQTIGVKTPTEIQKAIIP----HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 14 ~~~i~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
++...+.+...|+ +++|.|.+.+. .+.++++.++.+|||+|||.+|+++++..... +.+++|.+||++|++|
T Consensus 232 ~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~---~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT---EKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC---CCeEEEEeCcHHHHHH
Confidence 3466667766777 58999998665 55568899999999999999999999887652 4589999999999999
Q ss_pred HH-HHHHHhhccCC--ceEEEEEcC
Q psy4275 90 IG-DQFLVLGKVMN--LRVSIITGG 111 (182)
Q Consensus 90 ~~-~~~~~~~~~~~--~~~~~~~~~ 111 (182)
+. +.+..+.+.++ +++..+.|+
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGK 332 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcc
Confidence 85 46776665554 666666654
No 87
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.64 E-value=1.5e-15 Score=119.54 Aligned_cols=128 Identities=17% Similarity=0.060 Sum_probs=85.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchh---------
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMV--------- 115 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 115 (182)
.+++++|||+|||.+++.++++.+.+. .+.+++|++|+++|++|+++.++.++.. ++...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 368999999999999999999876543 3569999999999999999998887542 344444432210
Q ss_pred --hh-hHHh------cCCCcEEEEChHHHHHHHhcC-CC--CCC--CCccEEEEeccccccccCChhHHHHHHHH
Q psy4275 116 --DQ-GKEL------AKKPHIVIATPGRLADHLDTC-NT--FSL--NRIKFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 116 --~~-~~~~------~~~~~Ilv~T~~~l~~~~~~~-~~--~~~--~~~~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
.. .... .-..+|+|+||+.+...+... .. +.. -..+++|+||+|.+.+.+.......+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l 151 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVL 151 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 00 0000 113679999999998876551 11 111 12378999999999886544444444333
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=4.3e-15 Score=125.24 Aligned_cols=131 Identities=22% Similarity=0.195 Sum_probs=105.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+++.|-...-.+..| -+.++.||+|||+++.++++-.... +..+-+++|+..||.|.++++..+.+.+|+++++
T Consensus 81 ~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~ 155 (830)
T PRK12904 81 RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT---GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGV 155 (830)
T ss_pred CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 5677776666555444 4899999999999999988644444 3357799999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCC-----CCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNT-----FSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~-----~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.|+.+...+...+ .++|+++||..+ .++++.... ...+.+.++|+||+|.|+=+.
T Consensus 156 i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe 217 (830)
T PRK12904 156 ILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE 217 (830)
T ss_pred EcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheecc
Confidence 99988776655554 489999999999 899987432 246778899999999998554
No 89
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.60 E-value=1.3e-14 Score=127.03 Aligned_cols=132 Identities=17% Similarity=0.113 Sum_probs=89.6
Q ss_pred CChHHHHhhhhhhhC-----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 28 TPTEIQKAIIPHVLN-----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.++++|.+++..+.+ .++.+++++||+|||.+++. ++..+.......++|+++|+.+|+.|+.+.++......+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 589999999977653 46799999999999988544 444455444456999999999999999988887633222
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC----CCCCCCCccEEEEecccccc
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC----NTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~----~~~~~~~~~~iI~DE~h~~~ 162 (182)
.......+...... .......+|+|+|.+++...+... ..+.+.++++||+||||+-.
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~ 553 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGY 553 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCC
Confidence 11111111111001 112345789999999997765321 12456788999999999953
No 90
>KOG0353|consensus
Probab=99.59 E-value=1.2e-14 Score=111.75 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=124.5
Q ss_pred cCCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 9 TDLKLNPWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 9 ~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
++||++.+..+.++. +.+..++|.|..++.....+++.++..|||.||++||.++.+-. .+.+++++|..+|.
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislm 147 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLM 147 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHH
Confidence 678999999999974 67889999999999999999999999999999999999998765 67899999999998
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCchhhhh---HHhcC---CCcEEEEChHHHHHH---Hhc-CCCCCCCCccEEEEec
Q psy4275 88 YQIGDQFLVLGKVMNLRVSIITGGMDMVDQG---KELAK---KPHIVIATPGRLADH---LDT-CNTFSLNRIKFLVLDE 157 (182)
Q Consensus 88 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~Ilv~T~~~l~~~---~~~-~~~~~~~~~~~iI~DE 157 (182)
+...-.++.+ |+....+..+.+..+.. ..+.+ +..++..||+++... +.+ .+.+....+.+|.+||
T Consensus 148 edqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaide 223 (695)
T KOG0353|consen 148 EDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDE 223 (695)
T ss_pred HHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecc
Confidence 7665566655 66666666555543222 22222 457899999998642 211 1334567788999999
Q ss_pred cccccccC--ChhHHHHHHHHhhcCC
Q psy4275 158 ADRLSLMT--SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 158 ~h~~~~~~--~~~~~~~~~~~~~~~~ 181 (182)
+|+-..|+ ++.....+..+++-+|
T Consensus 224 vhccsqwghdfr~dy~~l~ilkrqf~ 249 (695)
T KOG0353|consen 224 VHCCSQWGHDFRPDYKALGILKRQFK 249 (695)
T ss_pred eeehhhhCcccCcchHHHHHHHHhCC
Confidence 99999887 5566666777776665
No 91
>KOG0352|consensus
Probab=99.59 E-value=7.3e-15 Score=114.10 Aligned_cols=154 Identities=20% Similarity=0.293 Sum_probs=112.8
Q ss_pred HHHHHHHH-CCCCC-ChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHH
Q psy4275 16 WLIRQCQT-IGVKT-PTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGD 92 (182)
Q Consensus 16 ~i~~~l~~-~~~~~-~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 92 (182)
.+.++|++ +|+.. -++.|++++..+.+ +.++.+++|||+||++||.++.+.. ++-+|++.|..+|+....+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHH
Confidence 45667765 56654 58999999988766 6699999999999999999998775 5689999999999877666
Q ss_pred HHHHhhccCCceEEEEEcCCchhhhhHHhc------CCCcEEEEChHHHHH-----HHhcCCCCCCCCccEEEEeccccc
Q psy4275 93 QFLVLGKVMNLRVSIITGGMDMVDQGKELA------KKPHIVIATPGRLAD-----HLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Ilv~T~~~l~~-----~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.+.++ -+++..+++..+..++.+.+- ....++..||+.... +++. ..+-+.++++|+||||++
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhhhH
Confidence 66665 455666666666555444332 256789999997632 2222 113345789999999999
Q ss_pred cccC--ChhHHHHHHHHhhcCC
Q psy4275 162 SLMT--SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 162 ~~~~--~~~~~~~~~~~~~~~~ 181 (182)
..|+ ++.....+..+|..+|
T Consensus 154 SQWGHDFRPDYL~LG~LRS~~~ 175 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSVCP 175 (641)
T ss_pred hhhccccCcchhhhhhHHhhCC
Confidence 9988 6677777777777664
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.58 E-value=1.3e-13 Score=118.49 Aligned_cols=157 Identities=22% Similarity=0.181 Sum_probs=121.5
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhC----CC--cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 11 LKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLN----DE--DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 11 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~--~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
++.+.+..+.+....-...+|-|..++..+.+ ++ +-++||..|.|||-+++.++...... |++|.++|||.
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTT 653 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTT 653 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccH
Confidence 44555555566443333789999999999877 22 78999999999999999988887777 67999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 85 ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 85 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
-|++|.++.+++-+..+++++..+..-.+..+....+ .+..+|+|||..-+ . +.+.+++++++|+||-|+
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~--kdv~FkdLGLlIIDEEqR 727 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S--KDVKFKDLGLLIIDEEQR 727 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C--CCcEEecCCeEEEechhh
Confidence 9999999999999999999998887665554444333 24789999995433 2 456788999999999999
Q ss_pred ccccCChhHHHHHHHHhhcC
Q psy4275 161 LSLMTSLKFFFFFFFLKYYI 180 (182)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (182)
+.. +..+.+..++...
T Consensus 728 FGV----k~KEkLK~Lr~~V 743 (1139)
T COG1197 728 FGV----KHKEKLKELRANV 743 (1139)
T ss_pred cCc----cHHHHHHHHhccC
Confidence 654 4556677666543
No 93
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.58 E-value=9.1e-14 Score=117.45 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=109.5
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 17 LIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 17 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
+.+.+.+....+|+..|+.....+..|+++-+.+|||.|||+..++..+....+ +.+++||+||..|+.|.++.+++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k---gkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK---GKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc---CCeEEEEecCHHHHHHHHHHHHH
Confidence 334444443348999999999999999999999999999999876666665554 57999999999999999999999
Q ss_pred hhccCC-ceEEE-EEcCCchhhhhH----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 97 LGKVMN-LRVSI-ITGGMDMVDQGK----ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 97 ~~~~~~-~~~~~-~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+....+ .++.. +|+..+..+... .-.++.+|+|+|.+.+.+.+..... -++++|.+|++|.++..+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~---~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK---LKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc---cCCCEEEEccHHHHHhcc
Confidence 987766 44433 666644433222 2234789999999999888876332 357899999999988655
No 94
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=1.6e-14 Score=122.06 Aligned_cols=132 Identities=23% Similarity=0.218 Sum_probs=103.8
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+.+.|....-.+. ..-+.+++||.|||+++.++++..... +..+.||+|+..||.+.++++..+.+.+|++|.+
T Consensus 82 ~~ydVQliGgl~L~--~G~IaEm~TGEGKTL~a~lp~~l~al~---g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 82 RHFDVQLLGGMVLD--SNRIAEMRTGEGKTLTATLPAYLNALT---GKGVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred CcCchHHhcchHhc--CCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 45555554443333 345899999999999999998877666 4459999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCCCCC-----CCccEEEEeccccccccCC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNTFSL-----NRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~~~~-----~~~~~iI~DE~h~~~~~~~ 166 (182)
+.++.+...... .-.++|+++||..+ .++++..-.... +.+.++|+||+|.++-+..
T Consensus 157 i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 157 NVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred ecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 988876533322 22789999999999 899987423333 6788999999999987653
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=5e-14 Score=115.08 Aligned_cols=103 Identities=23% Similarity=0.284 Sum_probs=78.1
Q ss_pred EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH----hc
Q psy4275 47 IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE----LA 122 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 122 (182)
++.|+||+|||.+++..+.+.+.+ +.+++|++|+.+|+.|+++.+++.+ +.++..++++.+..+.... ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 468999999999987665554433 5689999999999999988887643 5678888887765443222 23
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++.+|+|||+..+. ..++++++||+||.|...-
T Consensus 75 g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sy 107 (505)
T TIGR00595 75 GEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSY 107 (505)
T ss_pred CCCCEEECChHHHc--------CcccCCCEEEEECCCcccc
Confidence 46799999987652 2477899999999998764
No 96
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.55 E-value=1.2e-13 Score=118.40 Aligned_cols=130 Identities=25% Similarity=0.331 Sum_probs=97.1
Q ss_pred CChHHHHhhhhhhh----CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH-HHHHHHhhccCC
Q psy4275 28 TPTEIQKAIIPHVL----NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI-GDQFLVLGKVMN 102 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~----~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-~~~~~~~~~~~~ 102 (182)
+.++.|.+....+. ++++.+++++||+|||++|+++++... .+.+++|.+||++|++|+ .+.+..+.+.++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~ 320 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQEVFH 320 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcC
Confidence 79999998665544 478899999999999999999988753 246899999999999999 577888888788
Q ss_pred ceEEEEEcCCchh-------------------------------------------------------------------
Q psy4275 103 LRVSIITGGMDMV------------------------------------------------------------------- 115 (182)
Q Consensus 103 ~~~~~~~~~~~~~------------------------------------------------------------------- 115 (182)
+++..+.|+....
T Consensus 321 ~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~~~ 400 (820)
T PRK07246 321 IDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLFYD 400 (820)
T ss_pred CcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCcch
Confidence 8777766642210
Q ss_pred ----hhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 116 ----DQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 116 ----~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
...+.-...++|+|++...+...+.... .+...+.+||||||++.+
T Consensus 401 ~cf~~~ar~~a~~AdivItNHall~~~~~~~~--~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 401 YDFWKRSYEKAKTARLLITNHAYFLTRVQDDK--DFARNKVLVFDEAQKLML 450 (820)
T ss_pred hhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc--CCCCCCEEEEECcchhHH
Confidence 0000011245899999988877665433 245688999999999984
No 97
>KOG0949|consensus
Probab=99.53 E-value=2.8e-14 Score=119.89 Aligned_cols=146 Identities=18% Similarity=0.255 Sum_probs=109.4
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH-HHHHHhhccCCceEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG-DQFLVLGKVMNLRVS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~~~~~~ 106 (182)
.|..||.+.+..+-.+++.++++||.+|||.+ ..++++...+..+..-+++++|+++|++|+. +....+....-.+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceec-cHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 58999999999999999999999999999988 4566666666666778999999999999995 444444233323333
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC--CCCCCCCccEEEEeccccccccCChhHHHHHHHH
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC--NTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~--~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
.+.|....+.... .-.|+|+|+.|+++..++-.. .....++++++|+||+|.+++..-...++.+--+
T Consensus 590 sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l 659 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL 659 (1330)
T ss_pred hhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh
Confidence 4444444333222 127999999999999988662 3346888999999999999988877777665443
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.51 E-value=2.7e-13 Score=116.15 Aligned_cols=137 Identities=17% Similarity=0.093 Sum_probs=91.4
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccC--Cc
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM--NL 103 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~--~~ 103 (182)
...|+|+|+.+..........++.+|||+|||.+++.++...+ ......+++|..|+.+.++++++.++++.+.. ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4489999998764434466789999999999999877655433 33334589999999999999998887644332 34
Q ss_pred eEEEEEcCCchhhh--------------------hHHhcC-------CCcEEEEChHHHHHHHhcCCCCCCCCc----cE
Q psy4275 104 RVSIITGGMDMVDQ--------------------GKELAK-------KPHIVIATPGRLADHLDTCNTFSLNRI----KF 152 (182)
Q Consensus 104 ~~~~~~~~~~~~~~--------------------~~~~~~-------~~~Ilv~T~~~l~~~~~~~~~~~~~~~----~~ 152 (182)
++.+.+|....... ...+.. -.+|+|||.+.++...-..+-..++.+ ++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 67777775432110 001111 158999999998754433221122222 48
Q ss_pred EEEeccccccc
Q psy4275 153 LVLDEADRLSL 163 (182)
Q Consensus 153 iI~DE~h~~~~ 163 (182)
|||||+|.+..
T Consensus 443 vIiDEVHAyD~ 453 (878)
T PRK09694 443 LIVDEVHAYDA 453 (878)
T ss_pred EEEechhhCCH
Confidence 99999998754
No 99
>KOG0947|consensus
Probab=99.51 E-value=1.5e-13 Score=115.29 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=104.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
++.++|++++-++..|.++++.|+|++|||+++.+++.-.... .-|++|..|-++|.+|-+..+++.+...| +
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----L 369 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKETFGDVG----L 369 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHHhccccc----e
Confidence 8999999999999999999999999999999987766543222 56899999999999998888777666433 7
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHH
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFF 171 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~ 171 (182)
++|+. ++..+++.+|+|.+.+.+++=+ +.=-++++.+|||||+|-+.|....-.|+
T Consensus 370 lTGDv-------qinPeAsCLIMTTEILRsMLYr-gadliRDvE~VIFDEVHYiND~eRGvVWE 425 (1248)
T KOG0947|consen 370 LTGDV-------QINPEASCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYINDVERGVVWE 425 (1248)
T ss_pred eecce-------eeCCCcceEeehHHHHHHHHhc-ccchhhccceEEEeeeeecccccccccce
Confidence 78877 3455788999999999988755 33357789999999999998876544443
No 100
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.50 E-value=6e-13 Score=110.40 Aligned_cols=73 Identities=23% Similarity=0.247 Sum_probs=56.7
Q ss_pred hhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhh-ccC--CceEEEEEc
Q psy4275 37 IPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLG-KVM--NLRVSIITG 110 (182)
Q Consensus 37 ~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~-~~~--~~~~~~~~~ 110 (182)
...+.+++..++++|||+|||.+|+++++..+.... +.+++|.+||++|++|+.+.+..+. +.. ++++..+.|
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~-~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERP-DQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc-CceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 344555889999999999999999999988765322 4689999999999999998888877 332 455555444
No 101
>KOG0351|consensus
Probab=99.48 E-value=1e-13 Score=118.79 Aligned_cols=156 Identities=22% Similarity=0.237 Sum_probs=113.3
Q ss_pred HHHHHH-HHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH
Q psy4275 16 WLIRQC-QTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 16 ~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 94 (182)
+....+ ..+|...+++-|.+++..++.|+++++.+|||.||++||.++++-. ++-+++|.|..+|.....
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv--- 321 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQV--- 321 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHH---
Confidence 344444 4579999999999999999999999999999999999998887665 558999999999965543
Q ss_pred HHhhccCCceEEEEEcCCchhhhh---HHhcC---CCcEEEEChHHHHHHHhcC-CCCCCCC---ccEEEEecccccccc
Q psy4275 95 LVLGKVMNLRVSIITGGMDMVDQG---KELAK---KPHIVIATPGRLADHLDTC-NTFSLNR---IKFLVLDEADRLSLM 164 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~Ilv~T~~~l~~~~~~~-~~~~~~~---~~~iI~DE~h~~~~~ 164 (182)
..+ ...+++...+.++....++. +.+.+ ..+|+..||+++.....-. ....+.. +.++|+||||++..|
T Consensus 322 ~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 322 THL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred Hhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 333 33378888888776653222 22222 5789999999996533221 1112333 789999999999998
Q ss_pred C--ChhHHHHHHHHhhcCC
Q psy4275 165 T--SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 165 ~--~~~~~~~~~~~~~~~~ 181 (182)
+ ++..--.+..++.-+|
T Consensus 401 gHdFRp~Yk~l~~l~~~~~ 419 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFP 419 (941)
T ss_pred cccccHHHHHHHHHHhhCC
Confidence 8 6666666666665554
No 102
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.47 E-value=1.2e-12 Score=113.95 Aligned_cols=83 Identities=24% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCChHHHHhhhhhhh----CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH-HHHHHhhccC
Q psy4275 27 KTPTEIQKAIIPHVL----NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG-DQFLVLGKVM 101 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~----~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~ 101 (182)
.++||.|.+....+. ++++.++.+|||+|||++|+++++.....+ +.+++|-++|++|.+|+. +.+..+.+.+
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~ 333 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--EEPVVISTYTIQLQQQLLEKDIPLLQKIF 333 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--CCeEEEEcCCHHHHHHHHHhhHHHHHHHc
Confidence 489999999775554 478899999999999999999998766543 568999999999999984 4444443333
Q ss_pred --CceEEEEEcC
Q psy4275 102 --NLRVSIITGG 111 (182)
Q Consensus 102 --~~~~~~~~~~ 111 (182)
++++.++.|.
T Consensus 334 ~~~~~~~~lKGr 345 (928)
T PRK08074 334 PFPVEAALLKGR 345 (928)
T ss_pred CCCceEEEEEcc
Confidence 3455555553
No 103
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.46 E-value=6.5e-13 Score=112.00 Aligned_cols=130 Identities=21% Similarity=0.256 Sum_probs=86.2
Q ss_pred ChHHHHhhhhhhhC----------CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 29 PTEIQKAIIPHVLN----------DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~----------~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
++++|..++..+.. .+..+++.+||+|||.+++..+...+ .....+++++++|+.+|..|+.+.++.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 78899888876532 25799999999999999765554433 43446799999999999999999988875
Q ss_pred ccCCceEEEEEcCCchhhhhHHhc-CCCcEEEEChHHHHHHHhcC-CCCCCCC-ccEEEEeccccccccC
Q psy4275 99 KVMNLRVSIITGGMDMVDQGKELA-KKPHIVIATPGRLADHLDTC-NTFSLNR-IKFLVLDEADRLSLMT 165 (182)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~-~~~~~~~-~~~iI~DE~h~~~~~~ 165 (182)
.... .+..+.......+. ...+|+|+|.+++...+... ..+...+ -.+||+||||+.....
T Consensus 318 ~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~ 381 (667)
T TIGR00348 318 KDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE 381 (667)
T ss_pred CCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH
Confidence 3210 11112222222222 34689999999998654331 1111111 1289999999976544
No 104
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.45 E-value=6.9e-13 Score=110.33 Aligned_cols=130 Identities=19% Similarity=0.212 Sum_probs=99.0
Q ss_pred CChHHHHhhhhhhhC----C-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 28 TPTEIQKAIIPHVLN----D-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.++++|..++..+.+ | +..++++.||+|||.+ .+.+++++.+.....++|+++-.++|++|.+..+..+... +
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrT-Aiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~ 242 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRT-AIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-G 242 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCccee-HHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-c
Confidence 689999999866544 3 4699999999999998 4677777888777789999999999999998888887665 3
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC----CCCCCCCccEEEEeccccccccCCh
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC----NTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~----~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
-.+..+.+... .+.++|.|+|.+.+...+... ..+....+++||+||||+=.-..+.
T Consensus 243 ~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~ 303 (875)
T COG4096 243 TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS 303 (875)
T ss_pred cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH
Confidence 44444443322 126799999999999887653 2346667999999999984443333
No 105
>KOG0349|consensus
Probab=99.45 E-value=2.2e-13 Score=106.29 Aligned_cols=99 Identities=33% Similarity=0.430 Sum_probs=82.3
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCC---ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCcc
Q psy4275 75 IFALVLTPTRELAYQIGDQFLVLGKVMN---LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIK 151 (182)
Q Consensus 75 ~~~lil~p~~~l~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~ 151 (182)
++++|+-|+++|++|.++.++++..... ++..+..|+.....+...+.++.+|+|+||+++.+.+.. ....+.+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~cr 365 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHCR 365 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeeeE
Confidence 6789999999999999998888766542 344466676666677777888999999999999999988 777889999
Q ss_pred EEEEeccccccccCChhHHHHHH
Q psy4275 152 FLVLDEADRLSLMTSLKFFFFFF 174 (182)
Q Consensus 152 ~iI~DE~h~~~~~~~~~~~~~~~ 174 (182)
++++||++-++..++...+..+.
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h 388 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFH 388 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHh
Confidence 99999999999998887766553
No 106
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.45 E-value=9.5e-13 Score=100.85 Aligned_cols=124 Identities=23% Similarity=0.184 Sum_probs=79.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCC--eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYG--IFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE 120 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~--~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (182)
.+.+++..++|.|||..++..+.......... ..+||++|. ++..+|..++.++......++..+.|..........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccccc
Confidence 56889999999999998766655333222211 259999999 777999999999986556678777776623333333
Q ss_pred hcCCCcEEEEChHHHH-----HHHhcCCCCCCCCccEEEEeccccccccCChhHH
Q psy4275 121 LAKKPHIVIATPGRLA-----DHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFF 170 (182)
Q Consensus 121 ~~~~~~Ilv~T~~~l~-----~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~ 170 (182)
.....+++|+|.+.+. ..... +..-+++++|+||+|.+-+.......
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~s~~~~ 155 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKDSKRYK 155 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTTSHHHH
T ss_pred ccccceeeeccccccccccccccccc---cccccceeEEEecccccccccccccc
Confidence 3457899999999998 21111 11223789999999999766654433
No 107
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1.4e-12 Score=110.46 Aligned_cols=131 Identities=22% Similarity=0.157 Sum_probs=102.4
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+.+.|....-.+. ..-+..+.||.|||+++.++++..... |..+.+++|+..||.+-++++..+.+.+|++|++
T Consensus 82 ~~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 56666665544444 345889999999999998888876666 5689999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCC-----CCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNT-----FSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~-----~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.++....++...+ .++|++||..-+ .++++..-. .-.+.+.++|+||+|.++=+.
T Consensus 157 i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDE 218 (913)
T PRK13103 157 VTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDE 218 (913)
T ss_pred ECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccc
Confidence 98877665554444 489999999887 455554211 134678999999999987543
No 108
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.42 E-value=4.7e-12 Score=96.86 Aligned_cols=70 Identities=23% Similarity=0.118 Sum_probs=55.5
Q ss_pred CChHHHHhhhh----hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC---CeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 28 TPTEIQKAIIP----HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY---GIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 28 ~~~~~Q~~~~~----~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
+++|.|.+... .+.+++++++.+|||+|||++++.+++..+...+. +.+++|.+++.++.+|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999554 44558899999999999999999999876655432 238999999999988876666654
No 109
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.42 E-value=4.7e-12 Score=96.86 Aligned_cols=70 Identities=23% Similarity=0.118 Sum_probs=55.5
Q ss_pred CChHHHHhhhh----hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC---CeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 28 TPTEIQKAIIP----HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY---GIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 28 ~~~~~Q~~~~~----~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
+++|.|.+... .+.+++++++.+|||+|||++++.+++..+...+. +.+++|.+++.++.+|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999554 44558899999999999999999999876655432 238999999999988876666654
No 110
>KOG0948|consensus
Probab=99.41 E-value=6.6e-13 Score=109.27 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=103.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+.|+|..++..+-++.++++.+.|++|||.++.+++...+.. +.|+||..|-++|.+|-+.++..-++. |++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~D----VGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKD----VGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcc----cce
Confidence 6899999999999999999999999999999999999888877 459999999999999998877765554 666
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
.+|+-.. ...+.-+|+|.+.+..++=+ +.--++.+.++||||+|-|-|...
T Consensus 202 MTGDVTI-------nP~ASCLVMTTEILRsMLYR-GSEvmrEVaWVIFDEIHYMRDkER 252 (1041)
T KOG0948|consen 202 MTGDVTI-------NPDASCLVMTTEILRSMLYR-GSEVMREVAWVIFDEIHYMRDKER 252 (1041)
T ss_pred eecceee-------CCCCceeeeHHHHHHHHHhc-cchHhheeeeEEeeeehhcccccc
Confidence 6676643 34567799999999888755 444577899999999999987653
No 111
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.40 E-value=5.6e-12 Score=109.40 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=94.3
Q ss_pred CChHHHHhhhhhhh----CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVL----NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~----~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.++|||.+++.++. ++.++|+...+|.|||+.++..+.......+..+.+|||||. ++..+|.++++++.. ..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 68999999998875 477899999999999998665554433333334578999996 455889888988875 36
Q ss_pred eEEEEEcCCchhhhhH---HhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCCh
Q psy4275 104 RVSIITGGMDMVDQGK---ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~---~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
++..++|......... ......+|+|+|.+.+........ --.+.+||+||||.+-+....
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~---k~~W~~VIvDEAHrIKN~~Sk 309 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK---RFSWRYIIIDEAHRIKNENSL 309 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc---cCCCCEEEEcCccccCCHHHH
Confidence 6777777654322111 123467899999998865433222 224679999999998876543
No 112
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.38 E-value=2.6e-11 Score=91.03 Aligned_cols=131 Identities=24% Similarity=0.269 Sum_probs=98.5
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.|++.|..+.-.+..|+ +++..||-|||+++.+++...... |..|-|++.+..|+..-++++..+.+.+|++++.
T Consensus 77 ~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~ 151 (266)
T PF07517_consen 77 RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGI 151 (266)
T ss_dssp ---HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEE
T ss_pred cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhhcccc
Confidence 68888888776665554 999999999999988777776666 5689999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHH-HHHhcCCC-----CCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLA-DHLDTCNT-----FSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~-~~~~~~~~-----~~~~~~~~iI~DE~h~~~~~~ 165 (182)
..++.+...+...+ .++|+.+|...+. ++++..-. ...+.+.++|+||+|.++-+.
T Consensus 152 ~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDe 213 (266)
T PF07517_consen 152 ITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDE 213 (266)
T ss_dssp EETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTG
T ss_pred CccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEec
Confidence 99888755544443 4679999999885 46654211 124678899999999988544
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.38 E-value=1.7e-12 Score=108.80 Aligned_cols=120 Identities=21% Similarity=0.305 Sum_probs=94.9
Q ss_pred CChHHHHhhhhhhhCC----CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVLND----EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~----~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+++.|..++..+.+. +..++.|.||+|||-+|+-.+...+.+ |.++|+++|..+|-.|+.+.++. .++.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~---rFg~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKA---RFGA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHH---HhCC
Confidence 5788899999888765 689999999999999988777777666 67999999999998886655554 4457
Q ss_pred eEEEEEcCCchhh----hhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 104 RVSIITGGMDMVD----QGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 104 ~~~~~~~~~~~~~----~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
++.+++++.+..+ +.+...++.+|+||| ++.-...++++++||+||-|.-
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt--------RSAlF~Pf~~LGLIIvDEEHD~ 325 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGT--------RSALFLPFKNLGLIIVDEEHDS 325 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEe--------chhhcCchhhccEEEEeccccc
Confidence 7888887766543 344445688999999 6644558999999999999963
No 114
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=8.2e-12 Score=105.32 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=103.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.|++.|..+.-.+..|+ +.+..||.|||+++.++++..... |..+-+++|+..||.+-++++..+.+.+|++|++
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 67777777665555454 999999999999998888887777 6689999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.++.....+...+ .++|+.+|...+ .++++..- ..-.+.+.+.|+||+|.++=+.
T Consensus 155 i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDe 216 (796)
T PRK12906 155 NLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDE 216 (796)
T ss_pred eCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeecc
Confidence 98877665554443 679999999887 45665521 1134567899999999987544
No 115
>KOG0951|consensus
Probab=99.35 E-value=1.3e-12 Score=112.39 Aligned_cols=128 Identities=22% Similarity=0.298 Sum_probs=102.2
Q ss_pred CChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH-HHHhhccCCceE
Q psy4275 28 TPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ-FLVLGKVMNLRV 105 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~-~~~~~~~~~~~~ 105 (182)
..+|.|.+.++.+.+ +.++++.+|+|+|||.|+-++++. .....++++++|..+.+..++.. -+++.+..|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 458999999999877 668888999999999999988887 22256999999999999888554 455666678888
Q ss_pred EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 106 SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
..+.|..+... .+.+..+|+|+||+.+..+ + ....+++.|.||+|.+.+....-
T Consensus 1219 ~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v 1272 (1674)
T KOG0951|consen 1219 VKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAV 1272 (1674)
T ss_pred EecCCccccch---HHhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCce
Confidence 88888877554 4455779999999999766 2 46778999999999988555433
No 116
>KOG0385|consensus
Probab=99.34 E-value=1e-11 Score=102.51 Aligned_cols=134 Identities=18% Similarity=0.111 Sum_probs=97.2
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+++||.+.+.++.+ |-|+|+...+|.|||+..+..+.+........+..+|++|...| ..|.++++++.. ++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P--~l 243 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTP--SL 243 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCC--Cc
Confidence 699999999988765 67899999999999988665555544433333468999998888 557888888877 58
Q ss_pred eEEEEEcCCchhhhh---HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCCh
Q psy4275 104 RVSIITGGMDMVDQG---KELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~---~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
++.+++|+....... -......+|+|+|.+..+.-- ..+.--+++++|+||+|++-+....
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk---~~lk~~~W~ylvIDEaHRiKN~~s~ 307 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK---SFLKKFNWRYLVIDEAHRIKNEKSK 307 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH---HHHhcCCceEEEechhhhhcchhhH
Confidence 899999987432211 112337899999999886531 2122224789999999999887653
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.33 E-value=1.8e-11 Score=101.79 Aligned_cols=131 Identities=21% Similarity=0.157 Sum_probs=104.7
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+++.|....-.+..|. +.++.||.|||+++.+++...... |..+.+++|+..||.+-++++..+.+.+|+++++
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 67888888777777664 889999999999998888877666 6689999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcC-----CCCCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-----~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.++....+....+ .|+|..+|..-+ .++++.. ...-.+.+.+.|+||+|.++-+.
T Consensus 153 i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDe 214 (764)
T PRK12326 153 ITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDE 214 (764)
T ss_pred ECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheecc
Confidence 98887765554444 689999998876 3455442 11234567899999999988554
No 118
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.32 E-value=4.2e-11 Score=105.52 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=77.2
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH----HHHHHHHHHHHH-hhccCCce
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR----ELAYQIGDQFLV-LGKVMNLR 104 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~----~l~~q~~~~~~~-~~~~~~~~ 104 (182)
...-.+.+..+.++..++++|+||||||+.....++.. .. +..+.+++.-|.+ +++.++++++.. ++...|+.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~-g~-g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL-GR-GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc-CC-CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 44455666777777888999999999999643333332 11 1123455555765 445555444442 33333333
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc-ccccCC
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR-LSLMTS 166 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~-~~~~~~ 166 (182)
+ .-. ....++++|+++||+.+++.+.... .++++++||+||+|+ +.+.++
T Consensus 154 v----rf~------~~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~Df 204 (1294)
T PRK11131 154 V----RFN------DQVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDF 204 (1294)
T ss_pred e----cCc------cccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccch
Confidence 2 111 1223578999999999999987633 488999999999995 555444
No 119
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.31 E-value=3.8e-11 Score=101.82 Aligned_cols=73 Identities=25% Similarity=0.211 Sum_probs=58.0
Q ss_pred CCChHHHHhhhhhhhC---C------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH-HHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLN---D------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI-GDQFLV 96 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~---~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-~~~~~~ 96 (182)
.+.++.|.+....+.+ + ++.++.||||+|||++|+++++.....+ +.+++|-++|.+|.+|+ .+.+..
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--~k~vVIST~T~~LQeQL~~kDlP~ 101 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--KKKLVISTATVALQEQLVSKDLPL 101 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHhhhhhH
Confidence 4899999997766653 2 6789999999999999999998876654 56899999999999999 455555
Q ss_pred hhccC
Q psy4275 97 LGKVM 101 (182)
Q Consensus 97 ~~~~~ 101 (182)
+.+.+
T Consensus 102 l~~~l 106 (697)
T PRK11747 102 LLKIS 106 (697)
T ss_pred HHHHc
Confidence 54433
No 120
>KOG0950|consensus
Probab=99.31 E-value=1.1e-11 Score=104.36 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=119.4
Q ss_pred HHHHHHHCCCCCChHHHHhhh--hhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH
Q psy4275 17 LIRQCQTIGVKTPTEIQKAII--PHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 17 i~~~l~~~~~~~~~~~Q~~~~--~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 94 (182)
..-.....|...+.+||.+++ +.+..++|.+...||+.|||+++.+.++....-. ...++.+.|..+.+.+-...+
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~~~l 289 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKISAL 289 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHHhhh
Confidence 333345568889999999998 5577889999999999999999998888776554 336889999998888878888
Q ss_pred HHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC-CCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 95 LVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC-NTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
..+....|+.+..+.|...... ..+.-++.|+|.++...++... ..=++..+++||+||.|.+.+.+....++.+
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred hhhccccCCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 8899999999988887664322 2345689999999987765432 1114778899999999999999977776665
Q ss_pred HH
Q psy4275 174 FF 175 (182)
Q Consensus 174 ~~ 175 (182)
..
T Consensus 366 l~ 367 (1008)
T KOG0950|consen 366 LA 367 (1008)
T ss_pred HH
Confidence 43
No 121
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.30 E-value=1.5e-11 Score=106.36 Aligned_cols=131 Identities=22% Similarity=0.173 Sum_probs=86.4
Q ss_pred CChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q psy4275 28 TPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRV 105 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 105 (182)
.+.|+|......+.. ...+++..++|.|||+.+.+.+...+... ...++|||||. +|..||..++.+. ++...
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~k---F~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRR---FNLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHH---hCCCe
Confidence 599999998877654 45789999999999999876666655443 34589999996 7888887766543 34555
Q ss_pred EEEEcCCchhhh--hHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 106 SIITGGMDMVDQ--GKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 106 ~~~~~~~~~~~~--~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
..+.+....... ....+...+++|+|.+.+...-.....+.-..++++|+||||++-.
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~ 286 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVW 286 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhcc
Confidence 555443321110 0012235689999988775411110112234688999999999973
No 122
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.26 E-value=4.2e-11 Score=81.10 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=69.6
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE 120 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (182)
.+|+-.++...+|+|||.-.+--++....+. +.++|++.||+.+++++.+.++.. ++++. . .... ..
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t-~~~~----~~ 68 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--T-NARM----RT 68 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEE--S-TTSS------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccC--c-eeee----cc
Confidence 3466678899999999986555555544444 679999999999999888777543 33332 1 1110 12
Q ss_pred hcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 121 LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 121 ~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
...+.-|-|+|...+.+++.. .....++++||+||||.....
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHH
T ss_pred ccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHH
Confidence 235667899999999888765 334678999999999975443
No 123
>KOG0389|consensus
Probab=99.25 E-value=1.1e-11 Score=102.60 Aligned_cols=142 Identities=18% Similarity=0.148 Sum_probs=98.8
Q ss_pred CChHHHHhhhhhhh----CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVL----NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~----~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+.+||.-.+.++. .+-++|+...+|.|||...+.++.. +.+.+..+.-|||||+..| +.|..++.+|+.. +
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlay-Lkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPs--l 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAY-LKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPS--L 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHH-HHHcCCCCCcEEEecchhH-HHHHHHHHHhCCc--e
Confidence 58999999887753 2558899999999999875544443 3333334568999999887 4455566666553 7
Q ss_pred eEEEEEcCCchhhhhHHhcC----CCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 104 RVSIITGGMDMVDQGKELAK----KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~----~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
+|-.++|........+...+ ..+|+|+|...+..--..++.+.-.+++++|+||+|.+-+....++..++
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM 548 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM 548 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHHHhc
Confidence 88888988765444433322 67999999887753332323334456889999999999988877766554
No 124
>KOG0391|consensus
Probab=99.24 E-value=2.2e-11 Score=104.36 Aligned_cols=141 Identities=19% Similarity=0.194 Sum_probs=112.9
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.++.||...+.++.. +-|.|+...+|.|||+..+..+.+...+.++.+--|||+||..+. .|..++++|+. ++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviL-nWEMElKRwcP--gl 691 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVIL-NWEMELKRWCP--GL 691 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhh-hhhHHHhhhCC--cc
Confidence 589999999987654 558999999999999998888888888888888899999998874 48888999988 68
Q ss_pred eEEEEEcCCchhhhhHHhcC---CCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHH
Q psy4275 104 RVSIITGGMDMVDQGKELAK---KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFF 174 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~---~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~ 174 (182)
++..++|........+.-|+ ..+|.|++...+..=+.. |.-+++.++|+||+|++-++...++-.+|+
T Consensus 692 KILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A---FkrkrWqyLvLDEaqnIKnfksqrWQAlln 762 (1958)
T KOG0391|consen 692 KILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA---FKRKRWQYLVLDEAQNIKNFKSQRWQALLN 762 (1958)
T ss_pred eEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH---HHhhccceeehhhhhhhcchhHHHHHHHhc
Confidence 99999998776555555554 457999998877654433 234567899999999999998877766554
No 125
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.21 E-value=2.4e-10 Score=101.00 Aligned_cols=127 Identities=19% Similarity=0.170 Sum_probs=84.7
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH-hhccCCceEEEE
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV-LGKVMNLRVSII 108 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~ 108 (182)
.....+.+..+.++..++++|+||||||+.....+++.- ....+++++.-|.+..+..++..+.. +....|..|++.
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG--RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC--CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 333455667777788899999999999997654554421 11133667777988888887666554 333334444432
Q ss_pred EcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc-ccccCC
Q psy4275 109 TGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR-LSLMTS 166 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~-~~~~~~ 166 (182)
....+ ....+++|.++|++.++..+.... .++++++||+||+|+ +.+.++
T Consensus 147 vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDEaHERsL~~D~ 197 (1283)
T TIGR01967 147 VRFHD------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDEAHERSLNIDF 197 (1283)
T ss_pred EcCCc------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcCcchhhccchh
Confidence 22111 123467899999999999887643 478899999999995 555443
No 126
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=3.4e-10 Score=96.02 Aligned_cols=131 Identities=24% Similarity=0.206 Sum_probs=100.4
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.+.+.|....-.+. ...+..+.||-|||+++.+++.-..+. |..+-||+++..||..-++++..+.+.+|++|++
T Consensus 85 r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~---GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 85 RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT---GKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc---CCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 56666665554444 445899999999999998888776666 5579999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcC-----CCCCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-----~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
..++.....+... -.|+|+.+|+..+ .++++.. ...-.+.+.+.|+||+|.++=+.
T Consensus 160 i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDE 221 (939)
T PRK12902 160 IQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDE 221 (939)
T ss_pred ECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeecc
Confidence 8776655444333 3789999999988 3444331 22345678899999999988544
No 127
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=2e-10 Score=97.87 Aligned_cols=74 Identities=18% Similarity=0.134 Sum_probs=62.2
Q ss_pred CCCCCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 24 IGVKTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
+.+..++|.|.+....+.+ +++.++.+|||+|||++.+.+++......+...+++|.+.|++-..|..+++++.
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4566679999887766544 8899999999999999999999987765544578999999999999999898885
No 128
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.17 E-value=7.4e-10 Score=94.46 Aligned_cols=139 Identities=20% Similarity=0.214 Sum_probs=101.0
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH-hhccCCceEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV-LGKVMNLRVS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~ 106 (182)
..+....+....+.++.-++++|+||+|||+.....+++.-+ ..++++.+.-|.+--|..+++.+.+ +....|-.|+
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 345556667777788889999999999999998888888766 2245788888999888888766554 4444455554
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhhcC
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKYYI 180 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~~~ 180 (182)
+..--. .....+..|-++|.+.|+..++... .++.+++||+||+|+ ........+..+++.+
T Consensus 128 Y~iRfe------~~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~ 189 (845)
T COG1643 128 YSIRFE------SKVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHE----RSLNTDILLGLLKDLL 189 (845)
T ss_pred EEEEee------ccCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhh----hhHHHHHHHHHHHHHH
Confidence 332111 1223467899999999999998644 488999999999998 5556666666666544
No 129
>KOG0387|consensus
Probab=99.14 E-value=6.1e-10 Score=92.53 Aligned_cols=137 Identities=18% Similarity=0.116 Sum_probs=94.3
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+.++|++++.++.+ +...|+-..+|.|||+..+..+.........-..+|||||. .+..||.+++..+... .
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~--~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP--F 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc--e
Confidence 478999999987755 66789999999999987544443333331323579999995 5568898899888774 7
Q ss_pred eEEEEEcCCch---------hh----hhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHH
Q psy4275 104 RVSIITGGMDM---------VD----QGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFF 170 (182)
Q Consensus 104 ~~~~~~~~~~~---------~~----~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~ 170 (182)
+|..++|..+. .. ..+....+..|+|+|.+.+.-. . ..+.-..++++|+||.|.+-+.+....+
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH~IrNpns~isl 358 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGHRIRNPNSKISL 358 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCcccccCCccHHHH
Confidence 88888876652 11 1111223567999998776332 1 2233445789999999999888775544
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.12 E-value=2.9e-10 Score=96.35 Aligned_cols=131 Identities=22% Similarity=0.219 Sum_probs=99.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
++++.|....-.+ .+..+.++.||.|||+++.+++.-.... |..|.|++++..||.+-+++...+.+.+|++|++
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 4666665554333 3557999999999999988888654444 5579999999999999999999999999999999
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
..++.+...+...+ .++|..+|..-+ .++++..- ..-.+.+.+.|+||+|.++=+.
T Consensus 151 i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDe 212 (870)
T CHL00122 151 IQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDE 212 (870)
T ss_pred eCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheecc
Confidence 88877665544443 579999998766 35555421 1134568899999999988554
No 131
>KOG1123|consensus
Probab=99.12 E-value=8.7e-11 Score=93.43 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=99.3
Q ss_pred CChHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 28 TPTEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
.++|+|+..+..+-. .++.+++.|.|+|||++.+.++... +.++|++|.+...++||...++.|..--+-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 489999999988765 3589999999999999876555543 5589999999999999999999987666666
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC-------CCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC-------NTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-------~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
++.++++... ....++.|+|+|..++.+--++. ..+.-+.++++++||+|-+-..-+++.+...
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv 446 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIV 446 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHH
Confidence 7776655432 23457899999988874321110 0113445889999999987776666655443
No 132
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.10 E-value=5.4e-10 Score=94.65 Aligned_cols=73 Identities=30% Similarity=0.306 Sum_probs=59.2
Q ss_pred HHCCCCCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 22 QTIGVKTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 22 ~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
..+...++++.|.+....+.. ++..++++|||+|||++++.+++...... +.+++|.++|+.+.+|..+....
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CCcEEEECCCHHHHHHHHHhhcc
Confidence 345556899999998866543 66699999999999999999999887665 36899999999999998655443
No 133
>KOG0920|consensus
Probab=99.09 E-value=2.7e-09 Score=91.18 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=103.2
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh-hccCCceE
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL-GKVMNLRV 105 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~-~~~~~~~~ 105 (182)
...+..+++.+..+.+++.++++|.||+|||+...-.+++....++...++++--|.+-.|..+++.+..- ....|-.|
T Consensus 172 LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred CccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 35678888899999999999999999999999988888888777665667788889988888888776653 33344444
Q ss_pred EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhhcC
Q psy4275 106 SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKYYI 180 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~~~ 180 (182)
+.-.+..+. ......++.||.+.++..+... ..+..+..+|+||+|+=. .....++..++..+
T Consensus 252 GYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHER~----i~~DflLi~lk~lL 314 (924)
T KOG0920|consen 252 GYQVRLESK------RSRETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHERS----INTDFLLILLKDLL 314 (924)
T ss_pred eEEEeeecc------cCCceeEEEecHHHHHHHhccC--cccccCceeeeeeEEEcc----CCcccHHHHHHHHh
Confidence 443332221 1224689999999999999773 357789999999999843 33334444444443
No 134
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=99.09 E-value=1.6e-09 Score=79.98 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=50.3
Q ss_pred ChHHHHhhhhhhhCCCc-EEEECCCCChHHHHHHHHHHHhh-----ccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 29 PTEIQKAIIPHVLNDED-CIGCAKTGSGKTLAFALPILQKW-----CEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~-~li~~~tg~GKT~~~~~~~~~~~-----~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
+++.|.+++..+.+... .+++||+|+|||.+....+.... .....+.++++++|++..++.+.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 68999999999998887 99999999999976544444331 1233467899999999999998887777
No 135
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.5e-09 Score=82.79 Aligned_cols=115 Identities=20% Similarity=0.255 Sum_probs=89.7
Q ss_pred CChHHHHhhhhhhh----CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVL----NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~----~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+++.|+.+-..+. +.+..++.+-||+|||-. ++..++...+. |.++.+..|..+.+-+++..+++-+.. .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~~--~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFSN--C 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhcc--C
Confidence 68999988765544 478999999999999987 55666666665 678999999999999999888886664 5
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
+..+++|+..... +.+++|+|...++.+.+. ++++|+||+|.+-
T Consensus 172 ~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a--------FD~liIDEVDAFP 215 (441)
T COG4098 172 DIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA--------FDLLIIDEVDAFP 215 (441)
T ss_pred CeeeEecCCchhc-------cccEEEEehHHHHHHHhh--------ccEEEEecccccc
Confidence 6667777764321 367999998888776655 6799999999754
No 136
>KOG0952|consensus
Probab=99.07 E-value=7.1e-11 Score=100.44 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=108.7
Q ss_pred CChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q psy4275 28 TPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 106 (182)
..+|.|.+.+-.... ..++++-+|||+|||.++...+...+...+. .+++|++|.++|+..-.+.|++....-|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 567778887766655 6789999999999999999999988777764 68999999999998887777776655599999
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCC-CCCCccEEEEecccccccc
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~-~~~~~~~iI~DE~h~~~~~ 164 (182)
-++|+...+. .-..+++++|+||+++....++|... -+.+++++|+||.|+..++
T Consensus 1006 e~tgd~~pd~---~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1006 ELTGDVTPDV---KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eccCccCCCh---hheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 9998876553 22347899999999999988876443 5778999999999988776
No 137
>KOG0922|consensus
Probab=99.04 E-value=4.5e-09 Score=86.11 Aligned_cols=139 Identities=20% Similarity=0.175 Sum_probs=99.9
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH-hhccCCceEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV-LGKVMNLRVS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~ 106 (182)
....+-.+.+..+.+++-.++.|+||||||+...-++.+.-+.+. +++.+.-|.+..|..+++.... .....|-.|+
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~--g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS--GKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC--CcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 345555677778888899999999999999997777777666653 3488888999998888766554 4444455554
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhhcC
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKYYI 180 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~~~ 180 (182)
+...-.+ .-.....|...|.+.++.-+.... .+++.++||+||||+ .......++..+|+.+
T Consensus 129 Y~IRFed------~ts~~TrikymTDG~LLRE~l~Dp--~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~ 190 (674)
T KOG0922|consen 129 YTIRFED------STSKDTRIKYMTDGMLLREILKDP--LLSKYSVIILDEAHE----RSLHTDILLGLLKKIL 190 (674)
T ss_pred eEEEecc------cCCCceeEEEecchHHHHHHhcCC--ccccccEEEEechhh----hhhHHHHHHHHHHHHH
Confidence 3221110 112367899999999998776544 588899999999997 6666667777777655
No 138
>KOG1802|consensus
Probab=98.99 E-value=2.1e-09 Score=88.14 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=69.2
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 19 RQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 19 ~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
+.+...++..++..|..+..+++.+.-.+++||+|+|||.+....+++....+ ++.+|+++|+...++|+++.+.+-
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~t- 477 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKT- 477 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhc-
Confidence 35566788899999999999999999999999999999998665555554443 558999999999999998887664
Q ss_pred ccCCceEEEEEc
Q psy4275 99 KVMNLRVSIITG 110 (182)
Q Consensus 99 ~~~~~~~~~~~~ 110 (182)
|++|..+..
T Consensus 478 ---gLKVvRl~a 486 (935)
T KOG1802|consen 478 ---GLKVVRLCA 486 (935)
T ss_pred ---CceEeeeeh
Confidence 566655543
No 139
>KOG0390|consensus
Probab=98.97 E-value=1.3e-08 Score=85.78 Aligned_cols=135 Identities=20% Similarity=0.103 Sum_probs=97.5
Q ss_pred CChHHHHhhhhhhhC----------CCcEEEECCCCChHHHHHHHHHHHhhccCCC----CeeEEEEcCCHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN----------DEDCIGCAKTGSGKTLAFALPILQKWCEDPY----GIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----------~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~----~~~~lil~p~~~l~~q~~~~ 93 (182)
.++|+|++.+.-+.+ ...+++...+|+|||...+..+...+.+.+. -.+.+||+|. .|+..|+++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999976644 2357778899999999877777777666664 1478999994 667889999
Q ss_pred HHHhhccCCceEEEEEcCCch-hhhhHHhc------CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 94 FLVLGKVMNLRVSIITGGMDM-VDQGKELA------KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
+.+|.....+....+++..+. +.....+. -...|++.+.+.+.++++.- ....++++|+||.|..=+...
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~i---l~~~~glLVcDEGHrlkN~~s 393 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKI---LLIRPGLLVCDEGHRLKNSDS 393 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHH---hcCCCCeEEECCCCCccchhh
Confidence 988877656666666766653 11111111 13468999999998877663 356689999999998766554
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=8.7e-09 Score=87.43 Aligned_cols=131 Identities=21% Similarity=0.161 Sum_probs=100.0
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
++++.|....-.+..| .+..+.||-|||+++.+++.-..+. |..|-|++.+..||..-+++...+...+|++|++
T Consensus 78 r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 78 RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 5666676655444444 5899999999999988887665555 5578999999999999999999999999999998
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCC-----CCCCCccEEEEeccccccccC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNT-----FSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~-----~~~~~~~~iI~DE~h~~~~~~ 165 (182)
...+.........+ .|+|..+|..-| .++++..-. .-.+.+.+.|+||+|.++=+.
T Consensus 153 i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDE 214 (925)
T PRK12903 153 NKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDE 214 (925)
T ss_pred eCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecc
Confidence 88766555444443 589999998877 457765311 134667899999999987544
No 141
>KOG4439|consensus
Probab=98.95 E-value=1.5e-09 Score=89.32 Aligned_cols=144 Identities=20% Similarity=0.138 Sum_probs=99.2
Q ss_pred CChHHHHhhhhhhhC-----CCcEEEECCCCChHHHHHHHHHHHhhccC-------CCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN-----DEDCIGCAKTGSGKTLAFALPILQKWCED-------PYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-----~~~~li~~~tg~GKT~~~~~~~~~~~~~~-------~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
++-|+|+.++.++.+ ....|+....|.|||.+.+..+++.-.+. +....++|||| .+|..||+.+++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 578999999988876 34688899999999998766666543221 11225899999 567799988888
Q ss_pred HhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHH----HHhcCC---CCCCCCccEEEEeccccccccCChh
Q psy4275 96 VLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLAD----HLDTCN---TFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~----~~~~~~---~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
.....--++|..++|.... .-.......++|+|+|..-+.. -....+ .+.--.++-||+||||.+-+.....
T Consensus 404 ~rl~~n~LsV~~~HG~n~r-~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~ 482 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKR-EISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQC 482 (901)
T ss_pred HHHhhcceEEEEecCCccc-cCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhH
Confidence 8777767899999988752 2222334689999999876654 111111 1111123469999999998877766
Q ss_pred HHHHH
Q psy4275 169 FFFFF 173 (182)
Q Consensus 169 ~~~~~ 173 (182)
....+
T Consensus 483 S~AVC 487 (901)
T KOG4439|consen 483 SKAVC 487 (901)
T ss_pred HHHHH
Confidence 55544
No 142
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.93 E-value=6e-09 Score=89.10 Aligned_cols=148 Identities=16% Similarity=0.054 Sum_probs=92.4
Q ss_pred CChHHHHhhhhhhhC---CC-cEEEECCCCChHHHHHHHHHHHhhcc-CCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 28 TPTEIQKAIIPHVLN---DE-DCIGCAKTGSGKTLAFALPILQKWCE-DPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~---~~-~~li~~~tg~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
...+.|..++..... .. .+++.+|||+|||.+++.++...+.. .....+++++.|++++.+++++.++......+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 458888888877665 34 78899999999999999888887766 33567999999999999999999998777655
Q ss_pred ceEEEEEcCCchhhhhHH---------h-----cCCCcEEEEChHHHHHHHhcCCCCC-CC--CccEEEEeccccccccC
Q psy4275 103 LRVSIITGGMDMVDQGKE---------L-----AKKPHIVIATPGRLADHLDTCNTFS-LN--RIKFLVLDEADRLSLMT 165 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~---------~-----~~~~~Ilv~T~~~l~~~~~~~~~~~-~~--~~~~iI~DE~h~~~~~~ 165 (182)
......+|.......... . ..-..+.++||.......-....+. +. ..+++|+||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 444323333221110000 0 0012344455444433111111111 11 13689999999998885
Q ss_pred ChhHHHHHHH
Q psy4275 166 SLKFFFFFFF 175 (182)
Q Consensus 166 ~~~~~~~~~~ 175 (182)
....+..+..
T Consensus 355 ~~~~l~~~i~ 364 (733)
T COG1203 355 MLAALLALLE 364 (733)
T ss_pred hHHHHHHHHH
Confidence 4344443333
No 143
>COG4889 Predicted helicase [General function prediction only]
Probab=98.90 E-value=9.3e-09 Score=86.85 Aligned_cols=141 Identities=19% Similarity=0.185 Sum_probs=89.3
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 16 WLIRQCQTIGVKTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 16 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
+....+.-..-..|+|+|+.++....+ +...=+.+..|+|||..++- +.+.+.+ .++++++|+.+|..|..
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLVPSISLLSQTL 223 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeecchHHHHHHHH
Confidence 444445444556899999999988766 22333456689999998654 3333333 48999999999999876
Q ss_pred HHHHHhhccCCceEEEEEcCCchh-------------------------hhhHHhcCCCcEEEEChHHHHHHHhcCCCCC
Q psy4275 92 DQFLVLGKVMNLRVSIITGGMDMV-------------------------DQGKELAKKPHIVIATPGRLADHLDTCNTFS 146 (182)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~ 146 (182)
..|..- +..+++...++++..-. ...+.-.++--|+.+|.+.+...-.. ...-
T Consensus 224 rew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G 301 (1518)
T COG4889 224 REWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAG 301 (1518)
T ss_pred HHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcC
Confidence 665543 22344444443321100 11111223456899999988765443 2334
Q ss_pred CCCccEEEEeccccccc
Q psy4275 147 LNRIKFLVLDEADRLSL 163 (182)
Q Consensus 147 ~~~~~~iI~DE~h~~~~ 163 (182)
+..+++||.||||+...
T Consensus 302 ~~~fDliicDEAHRTtG 318 (1518)
T COG4889 302 LDEFDLIICDEAHRTTG 318 (1518)
T ss_pred CCCccEEEecchhcccc
Confidence 77889999999998654
No 144
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.89 E-value=8.1e-09 Score=86.92 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=76.5
Q ss_pred EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhh----HHhc
Q psy4275 47 IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQG----KELA 122 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 122 (182)
+..+.+|+|||.+|+-.+-..+.. |.++|+++|..++..|+.+.++..+. +..+..++++.+..++. ....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 334446999999987777666555 66899999999999998888776553 25688888877654333 3334
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
++.+|+||| ++.-...++++++||+||-|.-
T Consensus 239 G~~~IViGt--------RSAvFaP~~~LgLIIvdEEhd~ 269 (665)
T PRK14873 239 GQARVVVGT--------RSAVFAPVEDLGLVAIWDDGDD 269 (665)
T ss_pred CCCcEEEEc--------ceeEEeccCCCCEEEEEcCCch
Confidence 568999999 6644558999999999999853
No 145
>KOG0384|consensus
Probab=98.89 E-value=5.9e-09 Score=90.19 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=95.0
Q ss_pred CCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 27 KTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.+++++|-+.+.+++. ++|+|+...+|.|||+..+..+.+.+......+-.|+|+|...+. .|...+..+. +
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~---~ 444 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWT---D 444 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHh---h
Confidence 5799999999987654 789999999999999875555444443332233478899976663 3555566555 6
Q ss_pred ceEEEEEcCCchhhhhHHhc----C-----CCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 103 LRVSIITGGMDMVDQGKELA----K-----KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~----~-----~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
.++++++|+....+..+.+. . ..+++++|.+.++.=....+ --+++++++||||++-+.....
T Consensus 445 mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~---~i~w~~~~vDeahrLkN~~~~l 516 (1373)
T KOG0384|consen 445 MNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS---KIPWRYLLVDEAHRLKNDESKL 516 (1373)
T ss_pred hceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc---cCCcceeeecHHhhcCchHHHH
Confidence 88999999887655554432 1 46899999998865333222 2236799999999998766543
No 146
>KOG0388|consensus
Probab=98.88 E-value=7e-09 Score=85.78 Aligned_cols=142 Identities=18% Similarity=0.129 Sum_probs=105.0
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.+.+||-..+.++.+ |=|.++...+|.|||+..+..+.+..-.+...+-.++|+|...| +.|++++.++.. .+
T Consensus 567 tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP--~~ 643 (1185)
T KOG0388|consen 567 TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLP--SF 643 (1185)
T ss_pred hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCc--cc
Confidence 577899999888766 77999999999999999776666655555445568999997777 556667766666 37
Q ss_pred eEEEEEcCCchhhhhHHhc---------CCCcEEEEChHHHH---HHHhcCCCCCCCCccEEEEeccccccccCChhHHH
Q psy4275 104 RVSIITGGMDMVDQGKELA---------KKPHIVIATPGRLA---DHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFF 171 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~---------~~~~Ilv~T~~~l~---~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~ 171 (182)
+++-+.|+.+.....+..+ ...+|+|++.+.+. +++++- ++.+.|+|||+.+-+....++..
T Consensus 644 k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkv------KWQYMILDEAQAIKSSsS~RWKt 717 (1185)
T KOG0388|consen 644 KVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKV------KWQYMILDEAQAIKSSSSSRWKT 717 (1185)
T ss_pred eeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhh------hhhheehhHHHHhhhhhhhHHHH
Confidence 8888888876544333322 25689999988773 445441 25699999999999999888888
Q ss_pred HHHHHhh
Q psy4275 172 FFFFLKY 178 (182)
Q Consensus 172 ~~~~~~~ 178 (182)
++..-++
T Consensus 718 LLsF~cR 724 (1185)
T KOG0388|consen 718 LLSFKCR 724 (1185)
T ss_pred Hhhhhcc
Confidence 7765443
No 147
>KOG1000|consensus
Probab=98.88 E-value=4.3e-08 Score=78.24 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=91.2
Q ss_pred CCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 26 VKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
+.++-|+|.+.+...++ |..+++...+|.|||+.++..+...... + -.+||||.... -.|++.+.++..-+.-
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE---w-plliVcPAsvr-ftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE---W-PLLIVCPASVR-FTWAKALNRFLPSIHP- 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc---C-cEEEEecHHHh-HHHHHHHHHhcccccc-
Confidence 45788999999877554 7889999999999999975444443222 3 48999996444 5677788877665433
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
+.++.++...-. .+.....|.|.+.+.+..+-.. ......+++|+||+|++-+...++....+
T Consensus 270 i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~ 332 (689)
T KOG1000|consen 270 IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHMLKDSKTKRTKAAT 332 (689)
T ss_pred eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhhhhccchhhhhhhh
Confidence 444444443211 1223456899998887654433 22445789999999999887766654433
No 148
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.87 E-value=1.6e-08 Score=88.47 Aligned_cols=118 Identities=19% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++..++..-+|||||++. +.+...+...+..+.+++|+-.++|-.|..+.++.+........ ...+..+....+.
T Consensus 273 ~~~G~IWHtqGSGKTlTm-~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~ 347 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTM-FKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLE 347 (962)
T ss_pred CCceEEEeecCCchHHHH-HHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHh
Confidence 357999999999999984 45555555557788999999999999999999998866533322 3334444445555
Q ss_pred CC-CcEEEEChHHHHHHHhcCCCC-CCCCccEEEEeccccccccC
Q psy4275 123 KK-PHIVIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 123 ~~-~~Ilv~T~~~l~~~~~~~~~~-~~~~~~~iI~DE~h~~~~~~ 165 (182)
+. ..|+|+|-++|.......... .-++=-++|+||||+-....
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~ 392 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGE 392 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccH
Confidence 43 589999999998887663111 12222379999999855433
No 149
>KOG1002|consensus
Probab=98.86 E-value=4.5e-08 Score=78.21 Aligned_cols=131 Identities=21% Similarity=0.167 Sum_probs=95.3
Q ss_pred CChHHHHhhhhhhhCC-----CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 28 TPTEIQKAIIPHVLND-----EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~-----~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.+-|+|++.+.++... ...++...+|-|||+.++..++..... ...++++|+.++ .||.+++.+... -.
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~r----a~tLVvaP~VAl-mQW~nEI~~~T~-gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDR----APTLVVAPTVAL-MQWKNEIERHTS-GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcccc----CCeeEEccHHHH-HHHHHHHHHhcc-Cc
Confidence 6889999998776552 356788899999999987777764333 359999999888 789999999877 35
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC-CCC-----------CCCC--ccEEEEeccccccccCC
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC-NTF-----------SLNR--IKFLVLDEADRLSLMTS 166 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~-~~~-----------~~~~--~~~iI~DE~h~~~~~~~ 166 (182)
.++-.++|......- .-..+++++++|...+.+.+++. ..+ .+.+ +-=||+||||.+-+...
T Consensus 258 lkv~~YhG~~R~~ni--kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 258 LKVYIYHGAKRDKNI--KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred eEEEEEecccccCCH--HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 788888886643222 11347899999999998777652 111 1222 22499999999987654
No 150
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.84 E-value=3.6e-08 Score=85.09 Aligned_cols=119 Identities=13% Similarity=0.159 Sum_probs=72.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH-----Hh----hccCCceEEEEEcCC--
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL-----VL----GKVMNLRVSIITGGM-- 112 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-----~~----~~~~~~~~~~~~~~~-- 112 (182)
.++.+.++||+|||.+++..+++.....+ ..++||+||+.+..+.+.+.+. .. .....+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 48899999999999998887776544433 4589999999999877665544 22 222234445555432
Q ss_pred -----c-hhhhhHHhc------CCCcEEEEChHHHHHHHh--c--------CCCCCCCCc----cEEEEeccccccc
Q psy4275 113 -----D-MVDQGKELA------KKPHIVIATPGRLADHLD--T--------CNTFSLNRI----KFLVLDEADRLSL 163 (182)
Q Consensus 113 -----~-~~~~~~~~~------~~~~Ilv~T~~~l~~~~~--~--------~~~~~~~~~----~~iI~DE~h~~~~ 163 (182)
+ ......... +..+|+|+|.+.+..-.. . .....+..+ -.+|+||.|++..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~ 215 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR 215 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc
Confidence 1 111111111 146899999998865211 0 010111111 2699999999965
No 151
>KOG0392|consensus
Probab=98.82 E-value=1.7e-08 Score=87.55 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=96.2
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCC-----CC-eeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDP-----YG-IFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-----~~-~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.++.||.+.+.++.- +-|.|+|..+|.|||+..+..+....+.+. .. .-.+||||+ .|+.-|..+++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 479999999877643 569999999999999887766655544431 11 227999996 5667788888888
Q ss_pred hccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 98 GKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
+.. .+|..+.|........+.-.++++|+|++.+.+.+=+... .-.++.++|+||.|-+-+...
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l---~~~~wNYcVLDEGHVikN~kt 1117 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYL---IKIDWNYCVLDEGHVIKNSKT 1117 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHH---HhcccceEEecCcceecchHH
Confidence 876 7888888877666666666678899999999885322211 122366999999997665443
No 152
>KOG0925|consensus
Probab=98.77 E-value=2.9e-08 Score=79.05 Aligned_cols=162 Identities=17% Similarity=0.126 Sum_probs=105.6
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
.+..|...+.+....+.+++..-...+.++.+..+.+.+++-++++|.||+|||+...-++++...... ..+...-|.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQpr 100 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPR 100 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCch
Confidence 467889999999999999887666788888888888888999999999999999987777777766654 357777899
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
+.-+.+++....+-+ +++.+--.| .+...+ ....++.-+-.+|.++++.-..... .+.+.+.||+||||+
T Consensus 101 rvaamsva~RVadEM---Dv~lG~EVG-ysIrfE-dC~~~~T~Lky~tDgmLlrEams~p--~l~~y~viiLDeahE--- 170 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEM---DVTLGEEVG-YSIRFE-DCTSPNTLLKYCTDGMLLREAMSDP--LLGRYGVIILDEAHE--- 170 (699)
T ss_pred HHHHHHHHHHHHHHh---ccccchhcc-cccccc-ccCChhHHHHHhcchHHHHHHhhCc--ccccccEEEechhhh---
Confidence 988888876554422 222221111 111100 0000011122345555544333322 577889999999997
Q ss_pred cCChhHHHHHHHHhh
Q psy4275 164 MTSLKFFFFFFFLKY 178 (182)
Q Consensus 164 ~~~~~~~~~~~~~~~ 178 (182)
.......++..+++
T Consensus 171 -RtlATDiLmGllk~ 184 (699)
T KOG0925|consen 171 -RTLATDILMGLLKE 184 (699)
T ss_pred -hhHHHHHHHHHHHH
Confidence 44444455555444
No 153
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.76 E-value=1.8e-08 Score=72.97 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=45.2
Q ss_pred CChHHHHhhhhhhhC-C-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN-D-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
++++.|.+++..+.. + +-.+++|+.|+|||+.. ..+...+... +.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHh
Confidence 478999999999864 3 46788899999999873 4444444444 57899999999988876555
No 154
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.74 E-value=2e-08 Score=86.38 Aligned_cols=128 Identities=22% Similarity=0.169 Sum_probs=95.3
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII 108 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 108 (182)
+.+.|-..--.+. ..-+..+.||-|||+++.+++.-..+. |.-|-+|+....||..=++|...+...+|++|++.
T Consensus 139 ~ydVQLiGgivLh--~G~IAEM~TGEGKTLvatlp~yLnAL~---G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i 213 (1025)
T PRK12900 139 PYDVQLIGGIVLH--SGKISEMATGEGKTLVSTLPTFLNALT---GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVI 213 (1025)
T ss_pred ccchHHhhhHHhh--cCCccccCCCCCcchHhHHHHHHHHHc---CCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeee
Confidence 4444544443343 445889999999999998888776666 44688999999999999999999999999999988
Q ss_pred EcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCCC-----CCCCCccEEEEeccccccc
Q psy4275 109 TGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCNT-----FSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~~-----~~~~~~~~iI~DE~h~~~~ 163 (182)
..+.....+.. .-.|+|..||..-| .++++..-. .-.+.+.+.|+||+|.++=
T Consensus 214 ~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLI 272 (1025)
T PRK12900 214 LNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLI 272 (1025)
T ss_pred CCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhh
Confidence 76655444433 34789999998776 466655211 1345678999999999874
No 155
>KOG0923|consensus
Probab=98.74 E-value=7.4e-08 Score=79.26 Aligned_cols=141 Identities=18% Similarity=0.159 Sum_probs=95.5
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH-HHhhccCCce
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF-LVLGKVMNLR 104 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~-~~~~~~~~~~ 104 (182)
.....++-.+.+.++....-.++.|.||||||+...-++.+.=+..+ +.++-+.-|.+..|..++..+ +.+...+|-.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~-gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG-GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC-CceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 34567777888888888999999999999999987766666555543 445888889999999885444 3444443333
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhhc
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKYY 179 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~~ 179 (182)
|++ +...+. .-.++.-+-++|.++++.-+.. ..++.+.++||+||||. .......+|..+++.
T Consensus 342 VGY-----sIRFEd-cTSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHE----RTL~TDILfgLvKDI 404 (902)
T KOG0923|consen 342 VGY-----SIRFED-CTSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHE----RTLHTDILFGLVKDI 404 (902)
T ss_pred cce-----EEEecc-ccCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhh----hhhhhhHHHHHHHHH
Confidence 321 111110 1123456788999999875543 23688899999999997 455555566655554
No 156
>KOG0386|consensus
Probab=98.73 E-value=9.3e-09 Score=87.50 Aligned_cols=134 Identities=15% Similarity=0.102 Sum_probs=91.0
Q ss_pred CCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 27 KTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.++.+||...+.++.+ +-|.++...+|.|||+..+..+.+.+-.....+-.+|+||+..|.+ |..++..|...
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS-- 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS-- 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccc--
Confidence 4799999999988765 4488999999999998866555555444443445789999988855 66677777553
Q ss_pred ceEEEEEcCCchh--hhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 103 LRVSIITGGMDMV--DQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 103 ~~~~~~~~~~~~~--~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
+..+.+.|..... ........+.+|+++|.+.+.+ ....+.--++.++|+||.|+|-+...
T Consensus 470 v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~~ 532 (1157)
T KOG0386|consen 470 VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAIC 532 (1157)
T ss_pred eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchhh
Confidence 5556666654321 1112223678999999877644 11112222356899999999987543
No 157
>KOG0926|consensus
Probab=98.71 E-value=1.6e-07 Score=78.88 Aligned_cols=120 Identities=21% Similarity=0.238 Sum_probs=84.3
Q ss_pred HhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc
Q psy4275 34 KAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG 110 (182)
Q Consensus 34 ~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 110 (182)
.+..+++..+.-+++||.||+|||+...-.+.+.=+.++ .++.+-|.-|.+..+..+++....-...++-.|++...
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 445566666778999999999999986666665544432 34577888899998888876666544445555543321
Q ss_pred CCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 111 GMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 111 ~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
- ...+.....|.++|.+.++.-+.. .+.++..+.||+||||.=
T Consensus 342 f------d~ti~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHER 384 (1172)
T KOG0926|consen 342 F------DGTIGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHER 384 (1172)
T ss_pred e------ccccCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhc
Confidence 0 012234678999999999987765 356888999999999973
No 158
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.68 E-value=4e-08 Score=71.19 Aligned_cols=59 Identities=25% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
+...++.|...+..+.+.+.+++.||+|+|||+.++..+++.+.+. .-.+++|+-|...
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVE 60 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCC
Confidence 3467889999999999888899999999999999999998887763 3447888878764
No 159
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.67 E-value=4.4e-07 Score=76.58 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCChHHHHhhhhhhhCC-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
..+++.|.+++...... ...++.||+|+|||.+..-.+...+.. +.++++++||...++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999888765 788999999999998755444444333 45899999999999998877765
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=7.6e-08 Score=83.04 Aligned_cols=130 Identities=22% Similarity=0.189 Sum_probs=94.0
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII 108 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 108 (182)
++++=.+.+-.+.=...-+..+.||-|||+++.+++.-..+. |.-|-+|+....||..=+++...+...+|++|++.
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i 244 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCI 244 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---CCCcEEEEechhhhhccHHHHHHHHHHhCCceeec
Confidence 344444444333333456899999999999998888777666 44688899999999999999999999999999988
Q ss_pred Ec-CCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEeccccccc
Q psy4275 109 TG-GMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 109 ~~-~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~ 163 (182)
.. ......+ .-.-.|+|..+|..-| .++++..- ..-.+.+.+.|+||+|.++=
T Consensus 245 ~~~~~~~~~r--r~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILI 304 (1112)
T PRK12901 245 DKHQPNSEAR--RKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLI 304 (1112)
T ss_pred CCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhh
Confidence 65 3333332 2234789999998776 45665421 11345678999999998874
No 161
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.58 E-value=3.2e-07 Score=72.33 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=60.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK 124 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (182)
-+++.|.+|+|||+.++..+... .....+.+++++++...+...+.+.+..... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhcc----------------------cch
Confidence 47889999999999966555554 2222356899999999998877777655420 001
Q ss_pred CcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 125 PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 125 ~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
....+..+..+...... ........++||+||||.+...
T Consensus 60 ~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTK 98 (352)
T ss_pred hhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhc
Confidence 11222333333332221 2224567889999999999984
No 162
>KOG0924|consensus
Probab=98.53 E-value=1.2e-06 Score=72.62 Aligned_cols=137 Identities=19% Similarity=0.200 Sum_probs=87.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH-hhccCCceEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV-LGKVMNLRVS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~ 106 (182)
.....+.+.+..+..++-+++.+.||+|||+...-+++..=+.. ++.+-+.-|.+..|..+++.++. +...+|-.|+
T Consensus 356 Pvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 356 PVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred chHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 34455666677777788899999999999998665555543333 44677777999999998776654 4344444443
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhh
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKY 178 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~ 178 (182)
+-.. ... .-.....|-..|.+.++.-.-..+ .+.+.+.||+||||+ .......+|..++.
T Consensus 434 YsIR-----FEd-vT~~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHE----RslNtDilfGllk~ 493 (1042)
T KOG0924|consen 434 YSIR-----FED-VTSEDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHE----RSLNTDILFGLLKK 493 (1042)
T ss_pred eEEE-----eee-cCCCceeEEEeccchHHHHHhhhh--hhhheeEEEechhhh----cccchHHHHHHHHH
Confidence 2211 000 111345688899999875332212 577899999999997 33344444444443
No 163
>KOG1803|consensus
Probab=98.49 E-value=4.4e-07 Score=74.09 Aligned_cols=64 Identities=25% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCChHHHHhhhhhhhCC-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
.++++.|++++....+. .-.+++||+|+|||.+....+...+.+ +.++++.+||...++.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHH
Confidence 46889999999887775 578889999999998855555555444 56999999999998888764
No 164
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.45 E-value=1.1e-06 Score=73.34 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=49.9
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHH--hhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ--KWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~--~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.++|+.++.....++..++.|++|+|||++....+.. .........++.+.+||.--+..+.+.....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 4899999999999999999999999999874333222 1111111357999999998888877766553
No 165
>PF13245 AAA_19: Part of AAA domain
Probab=98.44 E-value=1.6e-06 Score=52.94 Aligned_cols=51 Identities=31% Similarity=0.429 Sum_probs=39.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc--CCCCeeEEEEcCCHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE--DPYGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~--~~~~~~~lil~p~~~l~~q~~~~~ 94 (182)
++-+++.+|+|+|||....-.+.+.+.. .. +.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4456669999999998766666666532 23 568999999999999887776
No 166
>PRK10536 hypothetical protein; Provisional
Probab=98.43 E-value=3.7e-06 Score=62.88 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
++...+..|...+..+.++..+++.||+|+|||+.+....++.+.+.. -.++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCC
Confidence 456788899999998888888999999999999998888877665532 335555555543
No 167
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.39 E-value=1.8e-06 Score=75.23 Aligned_cols=145 Identities=20% Similarity=0.069 Sum_probs=97.7
Q ss_pred CCChHHHHhhhhhhhC-----CCcEEEECCCCChHHHHHHHHHHHhhccCCC-CeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 27 KTPTEIQKAIIPHVLN-----DEDCIGCAKTGSGKTLAFALPILQKWCEDPY-GIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~-----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
..++++|.+.+.++.. +.+.++...+|.|||...+..+......... .+.+++++|...+ .+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~-~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLL-SNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHH-HHHHHHHhhhCcc
Confidence 4689999999877551 6678888999999998877666653333332 3578999996554 6677777777665
Q ss_pred CCceEEEEEcCCch----hhhhHHhcCC-----CcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHH
Q psy4275 101 MNLRVSIITGGMDM----VDQGKELAKK-----PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFF 171 (182)
Q Consensus 101 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~ 171 (182)
... +...+|.... ......+... .+++++|.+.+.........+.-..+..+|+||+|.+.+........
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~ 494 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKA 494 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHH
Confidence 432 6667776641 2222222222 78999999988774222222334457799999999988877666555
Q ss_pred HH
Q psy4275 172 FF 173 (182)
Q Consensus 172 ~~ 173 (182)
..
T Consensus 495 l~ 496 (866)
T COG0553 495 LQ 496 (866)
T ss_pred HH
Confidence 44
No 168
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.38 E-value=7.6e-06 Score=68.70 Aligned_cols=71 Identities=15% Similarity=0.045 Sum_probs=51.6
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-CCCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-PYGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
..++|+.++.....++-.++.|++|+|||++....+....... ....++.+.+||.--+..+.+.+.....
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 3589999999888889999999999999987433322221111 1235788999999998888777665433
No 169
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.38 E-value=3.8e-06 Score=71.97 Aligned_cols=64 Identities=23% Similarity=0.152 Sum_probs=48.5
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
..+++.|++++..+..++..++.|++|+|||.+. ..++..+...+....+++++||...+..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHH
Confidence 4799999999999988889999999999999874 344444333321246888999988776544
No 170
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.30 E-value=2.9e-06 Score=65.32 Aligned_cols=70 Identities=27% Similarity=0.160 Sum_probs=53.8
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-CCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-PYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
+++.|.+++.. ..++.++.|++|||||.+.+.-+.+.+... -...+++++++|+..+.++.+.+......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 47889999877 567899999999999999777666666554 23458999999999999998888775443
No 171
>KOG1805|consensus
Probab=98.30 E-value=5.2e-06 Score=71.17 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=82.0
Q ss_pred CCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q psy4275 27 KTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRV 105 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 105 (182)
..++.-|++++..++. ....++.|=+|+|||.... .++..+... +.++++.+-|...++.+-..++.+ ++..
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~~--gkkVLLtsyThsAVDNILiKL~~~----~i~~ 740 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVAL--GKKVLLTSYTHSAVDNILIKLKGF----GIYI 740 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHHc--CCeEEEEehhhHHHHHHHHHHhcc----Ccce
Confidence 4788889998877665 5678889999999998843 344444443 668999999999988877776654 2222
Q ss_pred EEE---------------EcCCchh--hhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 106 SII---------------TGGMDMV--DQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 106 ~~~---------------~~~~~~~--~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
..+ ...++.. .......+...|+.+|=--+.+ ..+..++++++|+|||-++...-
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~-----plf~~R~FD~cIiDEASQI~lP~ 812 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH-----PLFVNRQFDYCIIDEASQILLPL 812 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc-----hhhhccccCEEEEccccccccch
Confidence 211 1111111 1112334577888888443333 23345668999999999887543
No 172
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=98.23 E-value=2.5e-06 Score=67.54 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=71.3
Q ss_pred ChHHHHhhhhhh------hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH--HHHHHHhhcc
Q psy4275 29 PTEIQKAIIPHV------LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI--GDQFLVLGKV 100 (182)
Q Consensus 29 ~~~~Q~~~~~~~------~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~--~~~~~~~~~~ 100 (182)
+++.|++++..+ ..+.++++.|+.|+|||..+ -.+.+.+... +..+++++||-..|..+ ...+..++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~~--~~~~~~~a~tg~AA~~i~~G~T~hs~f-- 76 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRSR--GKKVLVTAPTGIAAFNIPGGRTIHSFF-- 76 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhccc--cceEEEecchHHHHHhccCCcchHHhc--
Confidence 678899998887 56889999999999999884 3333333332 55788889987665544 11122211
Q ss_pred CCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhh
Q psy4275 101 MNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKY 178 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~ 178 (182)
++.+.. . ..... .+..-.. ....++..+++|+||+-++...........+..++.
T Consensus 77 -~i~~~~----~----------~~~~~---~~~~~~~-----~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 77 -GIPINN----N----------EKSQC---KISKNSR-----LRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRK 131 (364)
T ss_pred -Cccccc----c----------ccccc---cccccch-----hhhhhhhheeeecccccchhHHHHHHHHHhhhhhhc
Confidence 111100 0 00000 1111101 112466788999999998777766655555555544
No 173
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.21 E-value=4.7e-05 Score=55.97 Aligned_cols=153 Identities=18% Similarity=0.285 Sum_probs=93.3
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+|.....+.++.=.+. .++ -+++-|.+....+.+ ++|.+.+.-+|.|||.+ +.|++....+++.. -+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR-LVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc-EEEEEcC-
Confidence 5666666666654442 333 689999999888776 67999999999999999 56666666665422 4556666
Q ss_pred HHHHHHHHHHHHHh-hccCCceEEEE--EcCCchh----hhhH----HhcCCCcEEEEChHHHHHHHhc-------CCC-
Q psy4275 84 RELAYQIGDQFLVL-GKVMNLRVSII--TGGMDMV----DQGK----ELAKKPHIVIATPGRLADHLDT-------CNT- 144 (182)
Q Consensus 84 ~~l~~q~~~~~~~~-~~~~~~~~~~~--~~~~~~~----~~~~----~~~~~~~Ilv~T~~~l~~~~~~-------~~~- 144 (182)
++|.+|..+.+... ..-++-++..+ ....... .... .......|+++||+.++++.-. .+.
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 66888887776653 33333333222 1122111 1111 1123567999999999764211 010
Q ss_pred ---------CCCCCccEEEEecccccccc
Q psy4275 145 ---------FSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 145 ---------~~~~~~~~iI~DE~h~~~~~ 164 (182)
..++...-=|+||+|..+..
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 01223334699999988774
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.21 E-value=4e-05 Score=58.43 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=89.1
Q ss_pred CChHHHHhhhhhhh----------CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 28 TPTEIQKAIIPHVL----------NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~----------~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.+...|-+++-..- .+..+++-.+||.||--...-.+++...+. ..+.+++..+..|-......++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RKRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CCceEEEECChhhhhHHHHHHHHh
Confidence 36777777663332 134677777999999877666677766654 347999999999988888888887
Q ss_pred hccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC---CCC--------CCCCccEEEEeccccccccCC
Q psy4275 98 GKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC---NTF--------SLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~---~~~--------~~~~~~~iI~DE~h~~~~~~~ 166 (182)
... .+.+.-+..-.. .. ...-+..|+.+|...+..--+.. +.. -...=++|||||||.+-+...
T Consensus 115 G~~-~i~v~~l~~~~~-~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKY-GD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhcc-Cc---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 654 333332221110 00 01124469999999887654221 000 012235899999999988755
Q ss_pred -----hhHHHHHHHHhhcCC
Q psy4275 167 -----LKFFFFFFFLKYYIP 181 (182)
Q Consensus 167 -----~~~~~~~~~~~~~~~ 181 (182)
.+.-.....+.+-+|
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP 209 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP 209 (303)
T ss_pred cCccccHHHHHHHHHHHhCC
Confidence 233334444444444
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.20 E-value=8.1e-06 Score=69.25 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=69.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH-------H-HHhhccCCceEEEEEcCCch
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ-------F-LVLGKVMNLRVSIITGGMDM 114 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~-------~-~~~~~~~~~~~~~~~~~~~~ 114 (182)
.-|+-+.+.||+|||.||+-.+.+.-..-+ -.+.||+||+.+.-+-+... + +...+ +.+.-.+.-+...
T Consensus 74 ~lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Ye--nt~~e~~i~~~~~ 150 (985)
T COG3587 74 KLNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYE--NTRLESYIYDEDI 150 (985)
T ss_pred cceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhcc--CcceeEEeechHH
Confidence 347889999999999999877776433332 45899999999985543222 2 22222 2333333222222
Q ss_pred hhhhHHhcCCCcEEEEChHHHHHH------H-----hcCCCC-----------CCCCccEEEEecccccccc
Q psy4275 115 VDQGKELAKKPHIVIATPGRLADH------L-----DTCNTF-----------SLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 115 ~~~~~~~~~~~~Ilv~T~~~l~~~------~-----~~~~~~-----------~~~~~~~iI~DE~h~~~~~ 164 (182)
........+.+.+++.|...+..- + ...+.+ ..+ -.+|+||-|.|..+
T Consensus 151 ~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r--PIvIvDEPh~f~~~ 220 (985)
T COG3587 151 EKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR--PIVIVDEPHRFLGD 220 (985)
T ss_pred HHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC--CEEEecChhhcccc
Confidence 223333345788898887776432 1 110100 111 16999999999884
No 176
>KOG1132|consensus
Probab=98.18 E-value=1.8e-05 Score=67.29 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=31.6
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
.|++.|......++. +.+.++..|||+|||++.+...+.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LA 63 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLA 63 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHH
Confidence 678999887776655 678999999999999987766554
No 177
>KOG1131|consensus
Probab=98.18 E-value=2.4e-05 Score=63.34 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=46.6
Q ss_pred CCCCCChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhccCCC-CeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 24 IGVKTPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCEDPY-GIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
+.+....|.|.+-...+.+ +.++++.+|+|+|||++.+..++......+. -.+.+|..-|..=++....+++.
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 4456778888776555443 7899999999999999977666655555443 33566655544333333334443
No 178
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.14 E-value=1.2e-05 Score=68.28 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=70.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++-.++.+|+|+|||....-++-+.+.+. ..+++++...++|+.+++..++.-.-. |+. .+...... .+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~~--~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv--~Y~d~~~~-----~i~ 118 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKNP--DKSVLVVSHRRSLTKSLAERFKKAGLS-GFV--NYLDSDDY-----IID 118 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccCC--CCeEEEEEhHHHHHHHHHHHHhhcCCC-cce--eeeccccc-----ccc
Confidence 34567889999999998777666654322 458999999999999988877654211 111 11111111 111
Q ss_pred -CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCCh
Q psy4275 123 -KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 123 -~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
...+-+++..+.+...... .+.+.+++|+||+-.....-+.
T Consensus 119 ~~~~~rLivqIdSL~R~~~~----~l~~yDvVIIDEv~svL~qL~S 160 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLDGS----LLDRYDVVIIDEVMSVLNQLFS 160 (824)
T ss_pred ccccCeEEEEehhhhhcccc----cccccCEEEEehHHHHHHHHhH
Confidence 1345666666666443322 4667899999999888776443
No 179
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.13 E-value=1.3e-05 Score=68.46 Aligned_cols=131 Identities=22% Similarity=0.217 Sum_probs=98.2
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII 108 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 108 (182)
.+|+=.+.+-.+.-....++.+-||-|||+++.+++.-..+. +..+.+++...-|+..-+++...+....|.++++.
T Consensus 79 ~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 79 MRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred CChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 444445555555555667899999999999998887766666 45789999999999999999999999999999998
Q ss_pred EcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEecccccccc
Q psy4275 109 TGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~ 164 (182)
..+.+..+....+ .|+|..+|..-+ .++++..- ..-.+.+.+.|+||++.++=+
T Consensus 156 ~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILID 215 (822)
T COG0653 156 LAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILID 215 (822)
T ss_pred cCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeee
Confidence 8877655554443 689999998877 34444321 113446789999999988743
No 180
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.11 E-value=6.8e-05 Score=64.65 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=46.5
Q ss_pred CCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
..+++.|++++..+.. ++-+++.|++|+|||... -.+...+... +.+++.++||.-.+..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHH
Confidence 3689999999999877 467899999999999873 3344433332 568999999977765543
No 181
>KOG0989|consensus
Probab=98.04 E-value=1e-05 Score=61.44 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=22.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+.++.||+|+|||.++.+...+...
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 468999999999999998777666544
No 182
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.92 E-value=0.00015 Score=63.96 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCChHHHHhhhhhhhCC-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 90 (182)
..+++.|.+++..+..+ ..++++|+.|+|||+. +-.+...+... +.+++.++||.-.+..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHH
Confidence 37999999999998884 4678999999999987 33444433332 56899999997766544
No 183
>KOG1001|consensus
Probab=97.87 E-value=9.4e-05 Score=62.69 Aligned_cols=116 Identities=21% Similarity=0.201 Sum_probs=78.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCC------CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhh
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDP------YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQ 117 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (182)
..+++....|-|||...+..++..-.... .+.-.+++||...+ .||...+.+..+.....+.+++|.. .
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~-~qW~~elek~~~~~~l~v~v~~gr~----k 227 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLL-TQWKTELEKVTEEDKLSIYVYHGRT----K 227 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHH-HHHHHHHhccCCccceEEEEecccc----c
Confidence 46788889999999987766665544433 34457888886554 7787777666666567777778711 1
Q ss_pred hHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhH
Q psy4275 118 GKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKF 169 (182)
Q Consensus 118 ~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~ 169 (182)
.....+.++|+++|++.+.. . ..+.+..+ -+|+||+|.+.+.....+
T Consensus 228 d~~el~~~dVVltTy~il~~---~-~l~~i~w~-Riildea~~ikn~~tq~~ 274 (674)
T KOG1001|consen 228 DKSELNSYDVVLTTYDILKN---S-PLVKIKWL-RIVLDEAHTIKNKDTQIF 274 (674)
T ss_pred ccchhcCCceEEeeHHHhhc---c-cccceeEE-EEEeccccccCCcchHhh
Confidence 11224577899999998853 1 22223333 599999999988776543
No 184
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.85 E-value=0.00033 Score=62.32 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
.++...+.....+ ..+++.|.+++..+.. ++-.+++|+.|+|||+.. -.+...+... +.+++-++|+..-+..+.
T Consensus 367 v~~~~l~a~~~~~-~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~~--G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARH-ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEAA--GYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcC-CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEEcCcHHHHHHHH
Confidence 3444443332233 4799999999998754 677899999999999874 3444433332 568999999977765543
No 185
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.84 E-value=0.0002 Score=62.88 Aligned_cols=77 Identities=21% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhC------CCcE-EEE-CCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 18 IRQCQTIGVKTPTEIQKAIIPHVLN------DEDC-IGC-AKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 18 ~~~l~~~~~~~~~~~Q~~~~~~~~~------~~~~-li~-~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
.+.+.+..-..-..||..++..+.. ...+ .+. +.||+|||.+=.-.+ +.+.....+.|..|..-.+.|--|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCCCCCCceEEEEccccceecc
Confidence 3444444444567899998877654 2223 333 799999998744333 333333334454444444444444
Q ss_pred HHHHHH
Q psy4275 90 IGDQFL 95 (182)
Q Consensus 90 ~~~~~~ 95 (182)
..+.++
T Consensus 477 TGda~r 482 (1110)
T TIGR02562 477 TGHALK 482 (1110)
T ss_pred chHHHH
Confidence 433333
No 186
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.83 E-value=0.00019 Score=48.40 Aligned_cols=21 Identities=19% Similarity=0.165 Sum_probs=17.1
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
++++++.||+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 678999999999999764333
No 187
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.82 E-value=3.2e-05 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=16.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+++..++.|++|+|||......+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 35678999999999999866555443
No 188
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.81 E-value=0.00014 Score=62.03 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=59.4
Q ss_pred CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.-..+++.|.+++.. ...+.++.|+.|||||.+...-+.+.+.... ...++++++.++..+..+.+.+.......++
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v 270 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDI 270 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCc
Confidence 335799999998853 3457899999999999997666555544332 2458999999999999998887765443344
Q ss_pred eEEEEE
Q psy4275 104 RVSIIT 109 (182)
Q Consensus 104 ~~~~~~ 109 (182)
.+..+|
T Consensus 271 ~v~TFH 276 (684)
T PRK11054 271 TARTFH 276 (684)
T ss_pred EEEeHH
Confidence 444443
No 189
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.79 E-value=4.1e-05 Score=59.65 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=50.3
Q ss_pred CCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 24 IGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
.|+...+..|..++..++.. +-+.+.|+.|+|||+.++.+.+++....+.-.++++.=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 47777788899999988874 34566789999999999999999887766555777777776554
No 190
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.77 E-value=0.00016 Score=55.13 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=40.1
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
+|..+.+|+++++++.+.+..... ..-+++.||||||||+. +.++++.+.++
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~~~------------------~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAESP------------------RGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHhCC------------------CceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 578889999999999888855432 12378899999999988 66777776655
No 191
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.75 E-value=9.6e-05 Score=63.15 Aligned_cols=69 Identities=19% Similarity=0.092 Sum_probs=54.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
.+++.|.+++.+. ..++++.|++|||||.+...-+.+.+...+ ...++++++.|+..+.++.+.+....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999988653 467899999999999997766666654433 23479999999999999988887654
No 192
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00012 Score=59.68 Aligned_cols=71 Identities=24% Similarity=0.211 Sum_probs=52.5
Q ss_pred CChHHHHhhhhhhhC-----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 28 TPTEIQKAIIPHVLN-----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.|..-|-+++..+.. .++..+.|.||||||.+. ..++.... .-++|++|.+.||.|++.+++.++..-.
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~-AnVI~~~~-----rPtLV~AhNKTLAaQLy~Efk~fFP~Na 85 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTM-ANVIAKVQ-----RPTLVLAHNKTLAAQLYSEFKEFFPENA 85 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHH-HHHHHHhC-----CCeEEEecchhHHHHHHHHHHHhCcCcc
Confidence 455556666655544 357888999999999884 34444332 2589999999999999999999988754
Q ss_pred ce
Q psy4275 103 LR 104 (182)
Q Consensus 103 ~~ 104 (182)
+.
T Consensus 86 VE 87 (663)
T COG0556 86 VE 87 (663)
T ss_pred eE
Confidence 43
No 193
>PHA02533 17 large terminase protein; Provisional
Probab=97.70 E-value=0.0004 Score=57.67 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=77.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc--eE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL--RV 105 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~--~~ 105 (182)
.++|+|++.+..+..++-.++..+=..|||..+...++......+ +..+++++|+...+..+.+.++...+..+. +.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 588999999988766666788889999999987765555444333 458999999999998888887765554321 11
Q ss_pred EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 106 SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
....... ..-.+.+++.|.+.|... ....=.+..++++||+|.+-+
T Consensus 138 ~i~~~~~----~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 138 GIVEWNK----GSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred ceeecCc----cEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC
Confidence 1111111 011124566665555221 111222356899999997654
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.68 E-value=7.8e-05 Score=49.91 Aligned_cols=41 Identities=20% Similarity=0.038 Sum_probs=26.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
+++.++.||+|+|||..+...+... ... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~~~--~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPP--GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-CCC--CCCEEEECCEEcc
Confidence 4678999999999999864443333 222 1246777766554
No 195
>PRK04296 thymidine kinase; Provisional
Probab=97.68 E-value=0.00016 Score=52.19 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=25.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.-.++.||+|+|||+.++-.+.....+ +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 346789999999998866555544333 457777755
No 196
>KOG0953|consensus
Probab=97.61 E-value=8.3e-05 Score=60.69 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=66.2
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCC
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (182)
++-+|||.+|||..++--+.. ..+.+|..|.+-||.++++.+... |+.+.+++|......... .+.+
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~-------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKS-------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPA 260 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhh-------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcc
Confidence 445689999999987433333 346799999999999999888776 677777777543221111 1235
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 126 ~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.+=||-++. .- -..+.+.|+||+++|-+..
T Consensus 261 ~hvScTVEM~----sv-----~~~yeVAViDEIQmm~Dp~ 291 (700)
T KOG0953|consen 261 QHVSCTVEMV----SV-----NTPYEVAVIDEIQMMRDPS 291 (700)
T ss_pred cceEEEEEEe----ec-----CCceEEEEehhHHhhcCcc
Confidence 6677775543 11 2346799999999887654
No 197
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.59 E-value=0.00023 Score=61.35 Aligned_cols=71 Identities=17% Similarity=0.078 Sum_probs=55.3
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
..+++.|.+++.+. ..++++.|++|||||.+...-+.+.+...+ ...++++++.|+..+.++.+.+..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 46899999988653 467999999999999997666666554332 234899999999999999888877654
No 198
>PRK06526 transposase; Provisional
Probab=97.59 E-value=0.0004 Score=52.37 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=26.5
Q ss_pred hhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 38 PHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 38 ~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
..+..++++++.||+|+|||..+.......... +.+++++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~---g~~v~f~ 132 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQA---GHRVLFA 132 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHC---CCchhhh
Confidence 334457899999999999998865544443322 4455543
No 199
>KOG1015|consensus
Probab=97.58 E-value=0.00052 Score=59.50 Aligned_cols=138 Identities=17% Similarity=0.030 Sum_probs=81.2
Q ss_pred ChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhccC-CCCeeEEEEcCCHHHHHHHHHHHHHhhccC----
Q psy4275 29 PTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWCED-PYGIFALVLTPTRELAYQIGDQFLVLGKVM---- 101 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~~---- 101 (182)
.|+...+.+..... |-.+|+..-+|.|||+..+.++...+... ..-.++|||+|...+ ..|.+++.+|...+
T Consensus 680 Mwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~ 758 (1567)
T KOG1015|consen 680 MWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDE 758 (1567)
T ss_pred HHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHH-HHHHHHHHHhcccccccc
Confidence 34444444444332 55778888899999975333332222221 224589999998776 55888888887742
Q ss_pred CceEEEEEcCCchh---hhhHHhcCCCcEEEEChHHHHHHHhcCCCC------------CCCCccEEEEeccccccccCC
Q psy4275 102 NLRVSIITGGMDMV---DQGKELAKKPHIVIATPGRLADHLDTCNTF------------SLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 102 ~~~~~~~~~~~~~~---~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~------------~~~~~~~iI~DE~h~~~~~~~ 166 (182)
.+.|.-+..-.... .....+.+...|.|.-.+.+..+-..+... .-.--+++|.||+|.+-+...
T Consensus 759 ~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeks 838 (1567)
T KOG1015|consen 759 KLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKS 838 (1567)
T ss_pred cceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchH
Confidence 23343332222212 222344556789999988887665432211 111236999999998887664
Q ss_pred h
Q psy4275 167 L 167 (182)
Q Consensus 167 ~ 167 (182)
.
T Consensus 839 a 839 (1567)
T KOG1015|consen 839 A 839 (1567)
T ss_pred H
Confidence 3
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00064 Score=54.24 Aligned_cols=61 Identities=21% Similarity=0.117 Sum_probs=34.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccC-CCCeeEEEEcCCH--HHHHHHHHHHHHhhccCCceEEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCED-PYGIFALVLTPTR--ELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~--~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
+.+++.||||+|||+++.-.+....... ..+.++.+++-.. .-+. .+++.+.+..++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe
Confidence 4688899999999998654444333221 1244555555332 3222 2355565655665543
No 201
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.56 E-value=0.0019 Score=44.59 Aligned_cols=40 Identities=23% Similarity=0.110 Sum_probs=27.2
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
.++.|++|+|||..+...+...... +..++++........
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcchHH
Confidence 5789999999999865554444332 557778776655533
No 202
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00092 Score=53.03 Aligned_cols=91 Identities=22% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++.+++.||||+|||+.+...+.......+ ..++.+++....- .--.+.++.+.+..++.+...............+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYR-IGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEeccccc-ccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 568899999999999986555544333322 1245555432221 11133455555555666655544443333333334
Q ss_pred CCCcEEEEChHHH
Q psy4275 123 KKPHIVIATPGRL 135 (182)
Q Consensus 123 ~~~~Ilv~T~~~l 135 (182)
+..-|+|-|++..
T Consensus 215 ~~DlVLIDTaG~~ 227 (374)
T PRK14722 215 NKHMVLIDTIGMS 227 (374)
T ss_pred CCCEEEEcCCCCC
Confidence 4445777777644
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.54 E-value=0.0007 Score=51.85 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=59.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccC-CC---CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCED-PY---GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGK 119 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~---~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (182)
.+.+++|+|+-|||...--..-.+-... .+ -+-+.+-+|...-....+..+- ..++..... .......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL---~~lgaP~~~---~~~~~~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL---EALGAPYRP---RDRVAKL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH---HHhCcccCC---CCCHHHH--
Confidence 5899999999999997654443332211 11 1334455566555444443322 222222100 0000000
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhhc
Q psy4275 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKYY 179 (182)
Q Consensus 120 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~~ 179 (182)
-....++++.. .++++||||+|+++..+..+-...+.-+|++
T Consensus 134 ------------~~~~~~llr~~------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L 175 (302)
T PF05621_consen 134 ------------EQQVLRLLRRL------GVRMLIIDEFHNLLAGSYRKQREFLNALKFL 175 (302)
T ss_pred ------------HHHHHHHHHHc------CCcEEEeechHHHhcccHHHHHHHHHHHHHH
Confidence 01123444442 3679999999999998887766666666543
No 204
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.51 E-value=0.00035 Score=60.28 Aligned_cols=71 Identities=17% Similarity=0.069 Sum_probs=54.9
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
..++|.|.+++.+. ..++++.|++|||||.+...-+.+.+...+ ...++++++-|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 36999999988643 468999999999999997666665543322 234799999999999999888877654
No 205
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.44 E-value=0.00052 Score=58.69 Aligned_cols=69 Identities=17% Similarity=0.046 Sum_probs=53.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
.+++.|.+++.+ ...++++.|++|||||.+...-+.+.+...+ ...++++++.++..+.++.+.+.+..
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 378899998854 3468999999999999997766666654322 23579999999999999988777654
No 206
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.43 E-value=0.0011 Score=50.21 Aligned_cols=66 Identities=18% Similarity=0.066 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 15 PWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 15 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+++.++|...++..-.+.-.+...-+..|...++.|++|+|||..+...+.....+. +..++++.-
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~ 67 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL 67 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc
Confidence 455666664444443333333444566688899999999999998766665554432 446777764
No 207
>PRK08181 transposase; Validated
Probab=97.40 E-value=0.003 Score=48.03 Aligned_cols=57 Identities=21% Similarity=0.174 Sum_probs=33.8
Q ss_pred ChHHHHhhhh----hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 29 PTEIQKAIIP----HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 29 ~~~~Q~~~~~----~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
+...|...+. .+..++++++.||+|+|||-.+....... ... +.+++++. ...+..+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~--g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLAL-IEN--GWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHH-HHc--CCceeeee-HHHHHHH
Confidence 4455655552 33457899999999999997754443333 332 44565553 3444443
No 208
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.39 E-value=0.00094 Score=53.05 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=50.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE-cCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL-TPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL 121 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil-~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (182)
++.+.+.||||.|||++..-.+........ +.++-+| +-+--.+ -.+.++..++-.++.+.++............+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 678899999999999885544433332222 3344444 3332221 12344555555567777776666555555555
Q ss_pred cCCCcEEEEChHH
Q psy4275 122 AKKPHIVIATPGR 134 (182)
Q Consensus 122 ~~~~~Ilv~T~~~ 134 (182)
.+.--|+|-|.++
T Consensus 280 ~~~d~ILVDTaGr 292 (407)
T COG1419 280 RDCDVILVDTAGR 292 (407)
T ss_pred hcCCEEEEeCCCC
Confidence 4444566666554
No 209
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.35 E-value=0.00053 Score=55.92 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=19.0
Q ss_pred EEEECCCCChHHHHHHHHHHHhhc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.+++||.|+|||..+.+.+-....
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCc
Confidence 699999999999997666555433
No 210
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.29 E-value=0.0018 Score=52.47 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.9
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHH
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
+.......+..+..+++++++||+|+|||..+..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 4445556667777899999999999999988653
No 211
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=97.27 E-value=0.00097 Score=57.66 Aligned_cols=71 Identities=20% Similarity=0.113 Sum_probs=54.5
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
..++|.|.+++.+. ..++++.|+.|||||.+...-+.+.+...+ ...+++.++-|+..+.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 46899999998653 467999999999999997666666554332 234799999999999998888776643
No 212
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.27 E-value=0.0011 Score=49.67 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=56.5
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcC-CchhhhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCc
Q psy4275 73 YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGG-MDMVDQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRI 150 (182)
Q Consensus 73 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~ 150 (182)
..+.+|||+.+---+-.+...++.+... +..+.-+... ....+....+. +..+|.||||+++..++.. ..+.++++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCcccC
Confidence 3578899988755555555555555211 2233323222 23334444444 4789999999999999977 77889999
Q ss_pred cEEEEeccc
Q psy4275 151 KFLVLDEAD 159 (182)
Q Consensus 151 ~~iI~DE~h 159 (182)
.+||+|--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999754
No 213
>KOG0298|consensus
Probab=97.23 E-value=0.0015 Score=58.10 Aligned_cols=94 Identities=15% Similarity=0.001 Sum_probs=61.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccC-----------C----CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCED-----------P----YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~-----------~----~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
|+.++..-..|+|||..-+...+...... . ..+.+|||+|. ++..||.+++..-.... ++|..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 55667777899999988765555443221 1 12468999995 56689888888776653 78888
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHH
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADH 138 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~ 138 (182)
+.|=....-......-.++|+++|...+..-
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~E 482 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNE 482 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhH
Confidence 8773322111112234789999999999653
No 214
>KOG0991|consensus
Probab=97.22 E-value=0.00053 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHHh
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
.|.++.||+|+|||++....+-..
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHH
Confidence 589999999999999965444443
No 215
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.16 E-value=0.0022 Score=59.17 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=46.1
Q ss_pred CChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHH--HHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFA--LPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~--~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
.+++.|++++..++. ++.++++|..|+|||+..- +.++..+.. ..+..++.++||..-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHHH
Confidence 689999999999875 5789999999999998742 222222222 22457888999988776653
No 216
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.14 E-value=0.0043 Score=58.91 Aligned_cols=63 Identities=16% Similarity=0.108 Sum_probs=47.4
Q ss_pred CChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
.+++-|.+++..+.. ++-.+++|+.|+|||... -.+...+... +.+++.++|+...+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASEQ--GYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHhc--CCeEEEEeCCHHHHHHHHHH
Confidence 688999999988776 468899999999999873 3444433333 56899999998876665543
No 217
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=97.13 E-value=0.0078 Score=51.08 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=43.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
+.+-.++..|-|.|||.+..+.+...+... +.+++|.+|...-+.++.+.++...+.
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 356788899999999998765655444322 578999999999999988777776653
No 218
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.13 E-value=0.0018 Score=59.04 Aligned_cols=123 Identities=19% Similarity=0.108 Sum_probs=76.0
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII 108 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 108 (182)
.++.|.+++. ..++++++.|+.|||||.+..--++..+.....-.++++++-|+..+.++.+.+.......-..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5788999986 3578999999999999999776666665544223479999999999998877766643321000
Q ss_pred EcCCchhhhhHHhcCCCcEEEEChHHHHHHH-hcCC-CCCCCCccEEEEecccc
Q psy4275 109 TGGMDMVDQGKELAKKPHIVIATPGRLADHL-DTCN-TFSLNRIKFLVLDEADR 160 (182)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~-~~~~-~~~~~~~~~iI~DE~h~ 160 (182)
........+.+..-...-|+|-..|...+ ++.. .+.++. ++=|.||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP-~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDP-SFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCC-CceeCCHHHH
Confidence 01111122223333456789988886443 4321 112221 2345777654
No 219
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.11 E-value=0.0019 Score=51.84 Aligned_cols=111 Identities=15% Similarity=0.145 Sum_probs=67.7
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH-HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE-LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAK 123 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (182)
..++.|+.|||||.++...++..+.....+.+++++-++.. +.+.+...++.....+++....-...... .. ...+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecC
Confidence 45788999999999988777777766422568888888877 55666777777666656532211111100 11 1122
Q ss_pred -CCcEEEECh-HHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 124 -KPHIVIATP-GRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 124 -~~~Ilv~T~-~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+..|++... +...+ ......+.++.+|||..+...
T Consensus 80 ~g~~i~f~g~~d~~~~------ik~~~~~~~~~idEa~~~~~~ 116 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNK------LKSGAGIAIIWFEEASQLTFE 116 (396)
T ss_pred CCeEEEeecccCChhH------hhCcceeeeehhhhhhhcCHH
Confidence 455666554 22211 112334689999999998543
No 220
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.10 E-value=0.00012 Score=51.93 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=40.9
Q ss_pred EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCc
Q psy4275 47 IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPH 126 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (182)
++.++-|.|||.+.-+.+....... ..++++.+|+.+-+..+.+.+..-.+..+++.... ...........+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKK---KRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhccccccccccc---cccccccccccccce
Confidence 4788999999988544444433332 25799999999988887777666555544444100 000000011122455
Q ss_pred EEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 127 IVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 127 Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
|-...|+.+...- ...+++|+|||=.+
T Consensus 76 i~f~~Pd~l~~~~--------~~~DlliVDEAAaI 102 (177)
T PF05127_consen 76 IEFVAPDELLAEK--------PQADLLIVDEAAAI 102 (177)
T ss_dssp --B--HHHHCCT------------SCEEECTGGGS
T ss_pred EEEECCHHHHhCc--------CCCCEEEEechhcC
Confidence 6666776553321 12478999999653
No 221
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.10 E-value=0.0051 Score=49.21 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=22.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
.++++.||+|+|||...- .++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 579999999999999844 344433332223345555
No 222
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0028 Score=54.59 Aligned_cols=90 Identities=19% Similarity=0.127 Sum_probs=46.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++-+.+.||||+|||+++...+.......+ +.++.+++....-+ -..+.++.+.+..++.+.................
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRI-GALEQLRIYGRILGVPVHAVKDAADLRFALAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccch-HHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc
Confidence 345788999999999886555444322321 23555555432221 0133455555555655543332222222222223
Q ss_pred CCCcEEEEChHH
Q psy4275 123 KKPHIVIATPGR 134 (182)
Q Consensus 123 ~~~~Ilv~T~~~ 134 (182)
+.--|+|-|++.
T Consensus 263 ~~D~VLIDTAGR 274 (767)
T PRK14723 263 DKHLVLIDTVGM 274 (767)
T ss_pred CCCEEEEeCCCC
Confidence 333478888884
No 223
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.09 E-value=0.0033 Score=51.80 Aligned_cols=70 Identities=17% Similarity=0.068 Sum_probs=51.6
Q ss_pred HHHHhhhhhhhC-----C----CcEEEECCCCChHHHHHHHHHHHhhc-cCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 31 EIQKAIIPHVLN-----D----EDCIGCAKTGSGKTLAFALPILQKWC-EDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 31 ~~Q~~~~~~~~~-----~----~~~li~~~tg~GKT~~~~~~~~~~~~-~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
|||+..+..+.. + +.+++.-|=+-|||.......++.+. ....+..+++.++++..+..+.+.++.+.+.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567776665542 1 35778889999999876665555543 3344678999999999999999888887665
No 224
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.09 E-value=0.003 Score=53.90 Aligned_cols=67 Identities=24% Similarity=0.259 Sum_probs=51.4
Q ss_pred CChHHHHhhhhhhhC----C-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 28 TPTEIQKAIIPHVLN----D-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
.|...|..++..+.+ + ++.++.|.||+|||..+.. ++... +..+|||+|+..++.|+++.++.++..
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 577888888877654 2 3667999999999988543 33321 236899999999999999999998754
No 225
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=97.09 E-value=0.0018 Score=53.74 Aligned_cols=71 Identities=24% Similarity=0.148 Sum_probs=51.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
++.+.|.+++.. ..++-.+++|..|||||.+++.=+.+.++... .+..++++.|.+...+-+.+.+..++.
T Consensus 212 TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 212 TIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred HhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 455666666633 23567889999999999999877766665532 244599999999998877777766644
No 226
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.08 E-value=0.0017 Score=50.61 Aligned_cols=63 Identities=22% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHHCCCCCChHHHHhhhhhh-hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 21 CQTIGVKTPTEIQKAIIPHV-LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 21 l~~~~~~~~~~~Q~~~~~~~-~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
+.+.|. +.+.|.+.+..+ ..+.+++++|+||+|||+.. .+++..+...+.+.+++.+-...++
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 334443 567777766554 44779999999999999884 5555555332223355555444433
No 227
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.06 E-value=0.0041 Score=53.14 Aligned_cols=67 Identities=25% Similarity=0.262 Sum_probs=51.9
Q ss_pred CChHHHHhhhhhhhC----C-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 28 TPTEIQKAIIPHVLN----D-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
.|++.|...+..+.+ + ++.++.|.+|+||+..+.. ++... +..+++|+|+...+.++++.++.+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 789999998888754 2 2577999999999988543 22221 336999999999999999999888653
No 228
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.0031 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=19.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHHh
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+..+++||.|+|||.++.+.+...
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHH
Confidence 468999999999999876665443
No 229
>PRK06921 hypothetical protein; Provisional
Probab=97.06 E-value=0.018 Score=43.84 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
++++++.|++|+|||..+. ++...+..+. +..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhhc-CceEEEEEH
Confidence 5689999999999997754 3334343321 345666653
No 230
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.04 E-value=0.0043 Score=57.92 Aligned_cols=64 Identities=20% Similarity=0.165 Sum_probs=46.3
Q ss_pred CCChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhc--cCCCCeeEEEEcCCHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWC--EDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~--~~~~~~~~lil~p~~~l~~q~~ 91 (182)
..+++.|++++..+.. ++-.+++|..|+|||+.. -.+...+. ....+.+++.++||..-+..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 3689999999999886 468999999999999873 33333221 1222457888999987766543
No 231
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.03 E-value=0.0022 Score=50.81 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=19.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+..++++||||+|||+.. ..++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 3678999999999999884 4455544
No 232
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.03 E-value=0.0026 Score=50.55 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=19.9
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.+..++++||||+|||+.. .+++..+.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 3457899999999999884 45555443
No 233
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.01 E-value=0.0048 Score=47.72 Aligned_cols=57 Identities=26% Similarity=0.316 Sum_probs=35.7
Q ss_pred ChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 29 PTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 29 ~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
+.+.|.+.+.. +..+++++++|+||+|||+.. .+++..+.......+++.+-...++
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 44555555544 445789999999999999884 4555555442223356666555444
No 234
>KOG4150|consensus
Probab=96.98 E-value=0.00038 Score=57.34 Aligned_cols=161 Identities=7% Similarity=-0.123 Sum_probs=102.0
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 17 LIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 17 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
+.+.+.+....+...+|.+++..+..|++..+...+.+||.+++.......+...+ ....+++.|+.+++....+-++.
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEE
Confidence 34445555566889999999999999999999999999999998877777655543 23578888888876543222111
Q ss_pred hhccCC----ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhc-CCCC--CCCCccEEEEeccccccccCChhH
Q psy4275 97 LGKVMN----LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDT-CNTF--SLNRIKFLVLDEADRLSLMTSLKF 169 (182)
Q Consensus 97 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-~~~~--~~~~~~~iI~DE~h~~~~~~~~~~ 169 (182)
...... --|-...| .+.....+-...+.+++.+.|.......-- .-.+ .+=...++++||+|..........
T Consensus 354 ~~~~I~~~K~A~V~~~D~-~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~ 432 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDK-LSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALA 432 (1034)
T ss_pred EEEehhhhhcceeecccC-CCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHH
Confidence 111111 11112222 222223333345788999999887654322 1111 122345789999999888877777
Q ss_pred HHHHHHHhhc
Q psy4275 170 FFFFFFLKYY 179 (182)
Q Consensus 170 ~~~~~~~~~~ 179 (182)
...++++.++
T Consensus 433 ~~~~R~L~~L 442 (1034)
T KOG4150|consen 433 QDQLRALSDL 442 (1034)
T ss_pred HHHHHHHHHH
Confidence 7777777664
No 235
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.97 E-value=0.0082 Score=49.09 Aligned_cols=45 Identities=13% Similarity=0.046 Sum_probs=27.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 90 (182)
+..++.|++|+|||-.+ .++.+.+.....+.+++++.. ..+...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~ 186 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKA 186 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 45889999999999653 444554443333557777765 3343333
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.96 E-value=0.015 Score=43.61 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=22.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
.++++.|++|+|||..+...+.+ +... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~-l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE-LLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHhc--CCeEEEE
Confidence 47899999999999875444333 3332 4456655
No 237
>KOG0333|consensus
Probab=96.96 E-value=0.019 Score=47.17 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=53.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
.+.+||.++++.-++.+++.+.+ .+++++.+||+.+.+++...+. +..+|+|+|.- .. +.+++.+
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK----~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------Ag-RGIDIpn 585 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEK----AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AG-RGIDIPN 585 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhh----ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cc-cCCCCCc
Confidence 46788998988777766655554 4899999999999988876653 37899999943 22 6678899
Q ss_pred ccEEE
Q psy4275 150 IKFLV 154 (182)
Q Consensus 150 ~~~iI 154 (182)
++++|
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 98876
No 238
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.013 Score=48.24 Aligned_cols=91 Identities=21% Similarity=0.127 Sum_probs=47.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++-+.+.||||+|||++....+......++ +.++.++.-...- .-..+.++.+.+..++.+...............+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~R-igA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYR-IGGHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccc-hhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 456788999999999986655544433332 2245444322110 11134455555555555544333333223333344
Q ss_pred CCCcEEEEChHHH
Q psy4275 123 KKPHIVIATPGRL 135 (182)
Q Consensus 123 ~~~~Ilv~T~~~l 135 (182)
+...++|-|++..
T Consensus 334 d~d~VLIDTaGr~ 346 (484)
T PRK06995 334 NKHIVLIDTIGMS 346 (484)
T ss_pred CCCeEEeCCCCcC
Confidence 4556889888844
No 239
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.92 E-value=0.0026 Score=49.78 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=33.5
Q ss_pred CChHHHHhhhhhhhCC----CcEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 28 TPTEIQKAIIPHVLND----EDCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~----~~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
...|||...|..+... +..++.||.|.||+..+...+-..+..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4579999999887752 2477999999999998776666655543
No 240
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.88 E-value=0.0023 Score=53.66 Aligned_cols=127 Identities=14% Similarity=0.084 Sum_probs=80.8
Q ss_pred CChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH-HHHHHHhhccCCce
Q psy4275 28 TPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI-GDQFLVLGKVMNLR 104 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~-~~~~~~~~~~~~~~ 104 (182)
..+|+|.+....+... +.+.+..++-+|||.+.+..+.+.+...+ ..++++.|+...+... .+.+..+.+....-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P--~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDP--GPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCC--CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 6789999999888773 57888899999999987776666666654 3589999999999888 46677776655431
Q ss_pred EEEEEc---CCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 105 VSIITG---GMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 105 ~~~~~~---~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
-..+.+ ..........-..+..+.+.... +-..+.-..++++++||++.+..
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~-------S~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFPGGFLYLVGAN-------SPSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHHhCchhhcccCCchhheecCCCEEEEEeCC-------CCcccccCCcCEEEEechhhccc
Confidence 112221 00000001111123444444311 11233455678999999999853
No 241
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.87 E-value=0.0028 Score=48.57 Aligned_cols=38 Identities=21% Similarity=0.048 Sum_probs=23.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++.+.+.||||+|||+.+...+......++ +.++.++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEE
Confidence 446888999999999986554444433211 23555554
No 242
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.84 E-value=0.011 Score=44.83 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=17.3
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
..++++.||+|+|||..+-..
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 357899999999999986444
No 243
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.82 E-value=0.0079 Score=44.35 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=17.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
.|+++.||+|+|||..+.+.+-+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc
Confidence 37999999999999887444433
No 244
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.81 E-value=0.0064 Score=50.35 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=58.1
Q ss_pred CccCCCCCHHHHHHHHHC-CC----CCChHHHHhhhh---------hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC
Q psy4275 7 SFTDLKLNPWLIRQCQTI-GV----KTPTEIQKAIIP---------HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP 72 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~-~~----~~~~~~Q~~~~~---------~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~ 72 (182)
.+.+.|+++.+.+.+... .- ...+.+-...+. .+.+++.+.+.||+|+|||+.+...+.......
T Consensus 300 ~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~- 378 (559)
T PRK12727 300 LMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQH- 378 (559)
T ss_pred HHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhc-
Confidence 345667888888777432 11 111222112221 123367888999999999988654444332222
Q ss_pred CCeeEEEEcC--CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHH
Q psy4275 73 YGIFALVLTP--TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGR 134 (182)
Q Consensus 73 ~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~ 134 (182)
.+.++.++.- .+..+ .+.++......++.+...............+.+..-|+|-|++.
T Consensus 379 ~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~DLVLIDTaG~ 439 (559)
T PRK12727 379 APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGM 439 (559)
T ss_pred CCCceEEEecccccccH---HHHHHHhhcccCceeEecCcHHHHHHHHHHhccCCEEEecCCCc
Confidence 1234555442 22211 12344444444554433322222222222222233466677764
No 245
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0048 Score=52.33 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=19.3
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||..+.+.+-....
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4599999999999997666555433
No 246
>CHL00181 cbbX CbbX; Provisional
Probab=96.80 E-value=0.014 Score=44.81 Aligned_cols=23 Identities=17% Similarity=-0.050 Sum_probs=18.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
+.++++.||+|+|||.++-...-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998755433
No 247
>KOG2340|consensus
Probab=96.79 E-value=0.012 Score=48.31 Aligned_cols=142 Identities=22% Similarity=0.262 Sum_probs=85.9
Q ss_pred CCChHHHHhhhhhhhCCCcEEEEC-CCCChH--HHHHHHHHHHhhccC----------------------------CCCe
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCA-KTGSGK--TLAFALPILQKWCED----------------------------PYGI 75 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~-~tg~GK--T~~~~~~~~~~~~~~----------------------------~~~~ 75 (182)
..+++.|.+.+..+-+.++++.-. ..+.|+ +.++.+.++.+++.. -..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 468999999998888877766543 223343 233444444443321 0137
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCce-E-----E-------------------------EEEcCCchh--------h
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKVMNLR-V-----S-------------------------IITGGMDMV--------D 116 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~-----~-------------------------~~~~~~~~~--------~ 116 (182)
+|+||||+++.|-.+.+.+..+....+-. . . ++.|++... .
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 89999999999988888777663322110 0 0 111111100 0
Q ss_pred hhHH---hcCCCcEEEEChHHHHHHHhcC----CCC-CCCCccEEEEeccccccccCChh
Q psy4275 117 QGKE---LAKKPHIVIATPGRLADHLDTC----NTF-SLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 117 ~~~~---~~~~~~Ilv~T~~~l~~~~~~~----~~~-~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
..-. -....+|+||+|--+.=.+... +.+ .++++.++|+|-+|.|...++-.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEh 434 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEH 434 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHH
Confidence 0111 1236799999998887666521 112 56778899999999998877743
No 248
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0078 Score=52.67 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=18.0
Q ss_pred EEEECCCCChHHHHHHHHHHHhh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+++||.|+|||..+.+.+-...
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 48999999999999766555543
No 249
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79 E-value=0.0057 Score=49.59 Aligned_cols=38 Identities=18% Similarity=-0.018 Sum_probs=24.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhh-ccCCCCeeEEEEcC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKW-CEDPYGIFALVLTP 82 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~-~~~~~~~~~lil~p 82 (182)
++.+++.||||+|||+.+...+.... ... +.++.++.-
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEEC
Confidence 45788899999999988665544433 222 345655553
No 250
>PLN03025 replication factor C subunit; Provisional
Probab=96.78 E-value=0.017 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
.+.+++||+|+|||..+...+-.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999886544433
No 251
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.78 E-value=0.0061 Score=47.55 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=37.7
Q ss_pred HHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 20 QCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 20 ~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
.+...|. +.+.|.+.+.. +..+++++++|+||+|||... ..++......+...+++.+-.+.++
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3334443 55677777765 455889999999999999764 4444433211112345555444443
No 252
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.75 E-value=0.014 Score=50.14 Aligned_cols=129 Identities=14% Similarity=0.145 Sum_probs=77.1
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhCCC--cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 18 IRQCQTIGVKTPTEIQKAIIPHVLNDE--DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 18 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~--~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
...+...........|.+.+..+.+.+ -.++.+.-|-|||.+.-+++. .+.......++++.+|+.+-+..+.+.+.
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAGSVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcCCceEEEeCCCHHHHHHHHHHHH
Confidence 333444444456666666777766633 577889999999998765552 22222114589999999999988887777
Q ss_pred HhhccCCceEEEEEcCCc-hhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 96 VLGKVMNLRVSIITGGMD-MVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
+-....|++-.+...... ... .......|-..+|.... ..-+++|+|||=-+
T Consensus 283 ~~l~~lg~~~~v~~d~~g~~~~---~~~~~~~i~y~~P~~a~-----------~~~DllvVDEAAaI 335 (758)
T COG1444 283 KGLEFLGYKRKVAPDALGEIRE---VSGDGFRIEYVPPDDAQ-----------EEADLLVVDEAAAI 335 (758)
T ss_pred HhHHHhCCccccccccccceee---ecCCceeEEeeCcchhc-----------ccCCEEEEehhhcC
Confidence 766776765433222211 111 10122335555655432 11468999999643
No 253
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.0057 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.0
Q ss_pred cEEEECCCCChHHHHHHHHHHHh
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
..+++||+|+|||..+...+-..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36999999999999876554443
No 254
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0082 Score=49.80 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=19.2
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||..+.+.+-....
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3589999999999987666555443
No 255
>KOG0921|consensus
Probab=96.71 E-value=0.0076 Score=52.35 Aligned_cols=124 Identities=21% Similarity=0.245 Sum_probs=80.0
Q ss_pred HHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCe--eEEEEcCCHHHHHHHHHHHHHh-hccCCceEEEEE
Q psy4275 33 QKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGI--FALVLTPTRELAYQIGDQFLVL-GKVMNLRVSIIT 109 (182)
Q Consensus 33 Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~--~~lil~p~~~l~~q~~~~~~~~-~~~~~~~~~~~~ 109 (182)
-...+..+..+.-.++.+.||+|||.-+.-.+++.+..+..+. .+.+--|++..+..+++.+.+- ....+-.|++-.
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~v 462 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNV 462 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccc
Confidence 3445555666778899999999999999999999888875432 3455557776666665554432 222233332111
Q ss_pred cCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 110 GGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 110 ~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
......-.....|+.+|-+-++..+.. . +.-++++|+||.|+.+.++
T Consensus 463 -----Rf~Sa~prpyg~i~fctvgvllr~~e~-g---lrg~sh~i~deiherdv~~ 509 (1282)
T KOG0921|consen 463 -----RFDSATPRPYGSIMFCTVGVLLRMMEN-G---LRGISHVIIDEIHERDVDT 509 (1282)
T ss_pred -----cccccccccccceeeeccchhhhhhhh-c---ccccccccchhhhhhccch
Confidence 011111122446899999999888876 3 4457799999999877655
No 256
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.0019 Score=53.62 Aligned_cols=119 Identities=22% Similarity=0.152 Sum_probs=60.6
Q ss_pred EECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH-HHhhccCCceEEEEEcCCchh----hhhHHhc
Q psy4275 48 GCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF-LVLGKVMNLRVSIITGGMDMV----DQGKELA 122 (182)
Q Consensus 48 i~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 122 (182)
..+.||+|||+++...+++....... ..++.|......+.....+ ......+-+.-.+..++.... .......
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 45789999999988777776655322 3556665555443332111 111111101101111111100 0000123
Q ss_pred CCCcEEEEChHHHHHHHhcC--CCC---CCCCcc-EEEEeccccccccCChh
Q psy4275 123 KKPHIVIATPGRLADHLDTC--NTF---SLNRIK-FLVLDEADRLSLMTSLK 168 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~--~~~---~~~~~~-~iI~DE~h~~~~~~~~~ 168 (182)
.+..|..+|.+.+..-+-.. +.+ ++.+.. +++-||+||+....-..
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk 131 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKK 131 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhh
Confidence 46689999999997655321 222 333333 46779999998765433
No 257
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.0092 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=17.3
Q ss_pred EEEECCCCChHHHHHHHHHHHh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~ 67 (182)
.++.||.|+|||..+...+-..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5899999999999876555443
No 258
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.70 E-value=0.01 Score=43.77 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=17.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
++.+++.|++|+|||..+.....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999987544333
No 259
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.70 E-value=0.0046 Score=48.15 Aligned_cols=59 Identities=19% Similarity=0.094 Sum_probs=41.4
Q ss_pred CCCCChHHHHhhhhhhhCCC-cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 25 GVKTPTEIQKAIIPHVLNDE-DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~-~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
.+...++-|...+......+ |++++|+||||||+. +-.+.......+ +++.+--+.+|.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaELq 213 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAELQ 213 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhhc
Confidence 34568888888887776655 999999999999987 444444444432 677776666653
No 260
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.70 E-value=0.017 Score=47.26 Aligned_cols=38 Identities=18% Similarity=0.043 Sum_probs=24.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+.+++.||+|+|||..+.. +...+..+..+.+++++..
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHhCCCCeEEEEEH
Confidence 4588999999999987543 3333333322446676644
No 261
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.69 E-value=0.013 Score=43.06 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=18.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
++++++.||+|+|||..+....-.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999886544433
No 262
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.0072 Score=52.85 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=20.3
Q ss_pred EEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.|++||.|+|||.++.+........
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 6899999999999987776665543
No 263
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.65 E-value=0.02 Score=46.10 Aligned_cols=38 Identities=16% Similarity=0.081 Sum_probs=24.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+..++.||+|+|||..+ .++...+.++..+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 35789999999999875 344444443322446777743
No 264
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.61 E-value=0.012 Score=48.75 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+..+++||.|+|||..+.+.+-....
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46899999999999997666555433
No 265
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.58 E-value=0.0089 Score=56.87 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=45.3
Q ss_pred CCChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHH---HHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFA---LPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~---~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
..+++.|++++..+.. ++.++++|+.|+|||+... -++... ... .+.+++.++||..-+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~-~~~-~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQA-FES-EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHH-HHh-cCCeEEEEeChHHHHHHHH
Confidence 4689999999999765 4677889999999998752 122222 222 2567899999977766553
No 266
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.01 Score=51.14 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=18.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
-.|++|+.|+|||..+....-....
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3589999999999987665555443
No 267
>PRK04195 replication factor C large subunit; Provisional
Probab=96.57 E-value=0.038 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.031 Sum_probs=18.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
.+.+++.||+|+|||..+...+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999988644433
No 268
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.013 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=19.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+..+++||.|+|||.++-..+-....
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34688999999999997666555433
No 269
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.57 E-value=0.017 Score=45.69 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=18.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+.++.||+|+|||...- .++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 589999999999998753 344333
No 270
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.017 Score=46.07 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC--HH-HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT--RE-LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGK 119 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~--~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (182)
++.+.+.||+|+|||..+.-.+... ... +.++.+++-. +. -++| |+.+.+..++.+..............
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~~~~dp~dL~~al~ 278 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITTDTFRSGAVEQ----FQGYADKLDVELIVATSPAELEEAVQ 278 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeCCccCccHHHH----HHHHhhcCCCCEEecCCHHHHHHHHH
Confidence 5677899999999998866555443 232 3456555532 22 2334 44455555555543221111111111
Q ss_pred Hhc--CC-CcEEEEChHHH
Q psy4275 120 ELA--KK-PHIVIATPGRL 135 (182)
Q Consensus 120 ~~~--~~-~~Ilv~T~~~l 135 (182)
... ++ --|+|-|++..
T Consensus 279 ~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 279 YMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHhcCCCCEEEEECCCCC
Confidence 121 23 34888898874
No 271
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.03 Score=44.60 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=19.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.|+++.|+||+|||.+.- .++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~-~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK-FVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHH-HHHHHHHh
Confidence 379999999999999854 44444433
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.55 E-value=0.031 Score=45.30 Aligned_cols=87 Identities=17% Similarity=0.078 Sum_probs=45.6
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhh----hhHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVD----QGKE 120 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 120 (182)
-+.++|++|+|||+++.-.+.. +... +.++++++....-+ ...++++.+....++.+....+...... ....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~~--G~kV~lV~~D~~R~-aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQRK--GFKPCLVCADTFRA-GAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHC--CCCEEEEcCcccch-hHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 4678899999999886544443 2222 44677666432111 1223455555555666654333222100 1111
Q ss_pred h-cCCCc-EEEEChHHH
Q psy4275 121 L-AKKPH-IVIATPGRL 135 (182)
Q Consensus 121 ~-~~~~~-Ilv~T~~~l 135 (182)
. .++++ |+|-||+..
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 1 12444 788999876
No 273
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.54 E-value=0.032 Score=41.17 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=28.4
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
..|...++.|++|+|||..+...+.+.+.+ +..++++..
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~ 56 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT 56 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc
Confidence 447789999999999999876666555433 446777764
No 274
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.0095 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=19.7
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
-.|++|+.|+|||..+....-....
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3589999999999997766665544
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.49 E-value=0.026 Score=46.18 Aligned_cols=51 Identities=18% Similarity=0.033 Sum_probs=33.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
|.-.++.|++|+|||+.++..+.....+ +.+++|+.-... .+|+....+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees-~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEES-ASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcccc-HHHHHHHHHHc
Confidence 5678899999999999866665554422 457899886543 34554444433
No 276
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.014 Score=49.86 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=19.4
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||..+...+-....
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4699999999999987666555433
No 277
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.47 E-value=0.034 Score=41.33 Aligned_cols=42 Identities=17% Similarity=-0.016 Sum_probs=30.8
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..|.-.++.|++|+|||..++-.+.+.+.+. +..++++...
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E 51 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLE 51 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCC
Confidence 44577889999999999998776666665553 3467888743
No 278
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.47 E-value=0.021 Score=42.15 Aligned_cols=37 Identities=19% Similarity=0.101 Sum_probs=23.8
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.+++.||+|+|||-. +.++...+.+...+.+++|+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH
Confidence 479999999999975 4455554443322457777754
No 279
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.45 E-value=0.011 Score=42.92 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=31.9
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC--CHHHHHHHHHHHHHhhccCCceEEEE
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP--TRELAYQIGDQFLVLGKVMNLRVSII 108 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~ 108 (182)
+++.||||+|||++..-.+.+...+ +.++.+++- .+.-+ .+.++.+.+..++.+...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~ 62 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVA 62 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEES
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccH---HHHHHHHHHHhccccchh
Confidence 5789999999999866555444444 334544442 33222 234445555556666543
No 280
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=96.43 E-value=0.063 Score=42.09 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=52.5
Q ss_pred EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH---HHHHHhhccCCceEEEE--EcCCchhhhhHHh
Q psy4275 47 IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG---DQFLVLGKVMNLRVSII--TGGMDMVDQGKEL 121 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 121 (182)
++.++.|+|||......++..+...+....+++...+.++...+. ..+..+... .+....- .+..- .+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKI------IL 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEE------EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcE------Ee
Confidence 467899999999988888877777654446666655555555432 333344333 2222221 11111 11
Q ss_pred cCCCcEEEEChHHH--HHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 122 AKKPHIVIATPGRL--ADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 122 ~~~~~Ilv~T~~~l--~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
.++..|.+.+...- ..-++. ...+++++||+-.+.+..
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~G------~~~~~i~iDE~~~~~~~~ 113 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIRG------FEYDLIIIDEAAKVPDDA 113 (384)
T ss_dssp TTS-EEEEES-----SHHHHHT------S--SEEEEESGGGSTTHH
T ss_pred cCceEEEEeccccccccccccc------cccceeeeeecccCchHH
Confidence 45666666663321 122222 346799999998776544
No 281
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.42 E-value=0.033 Score=47.28 Aligned_cols=116 Identities=15% Similarity=0.118 Sum_probs=70.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccC-Cce-EEEEEcCCchhhhhHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVM-NLR-VSIITGGMDMVDQGKE 120 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 120 (182)
.+-.++..|--.|||+... +++..+...-.+.++++++|....++.+.++++...+.. +-+ +....| ... ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~ 328 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFS 328 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEE
Confidence 4678888999999999765 444444433227799999999999999988888765532 111 222223 111 001
Q ss_pred hcCC--CcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHH
Q psy4275 121 LAKK--PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFF 170 (182)
Q Consensus 121 ~~~~--~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~ 170 (182)
..++ ..|...+. +..+...=..++++|+|||+.+.+.-....+
T Consensus 329 f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~~al~~il 373 (738)
T PHA03368 329 FPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM 373 (738)
T ss_pred ecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCHHHHHHHH
Confidence 1222 24555531 2223333346889999999988775444433
No 282
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.42 E-value=0.015 Score=46.91 Aligned_cols=91 Identities=23% Similarity=0.153 Sum_probs=42.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++.+.+.||||+|||+.....+...........-.++.+.+.-. -..+.+..+.+..|+.+...............+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch--hHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 55688899999999998654443332222111123344443222 1122344444444555543333222222222223
Q ss_pred CCCcEEEEChHHH
Q psy4275 123 KKPHIVIATPGRL 135 (182)
Q Consensus 123 ~~~~Ilv~T~~~l 135 (182)
+.-.|+|-|+++.
T Consensus 269 ~~d~VLIDTaGrs 281 (420)
T PRK14721 269 GKHMVLIDTVGMS 281 (420)
T ss_pred CCCEEEecCCCCC
Confidence 3344666665443
No 283
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.42 E-value=0.017 Score=45.63 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=25.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..++++||||+|||+.. ..++..+.... +.+++.+-..
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~-~~~i~tiEdp 160 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNA-AGHIITIEDP 160 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCC-CCEEEEEcCC
Confidence 568899999999999985 44444443322 3355555443
No 284
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.01 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=18.9
Q ss_pred EEEECCCCChHHHHHHHHHHHhhc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.+++||.|+|||..+.+..-....
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 489999999999998766555444
No 285
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.016 Score=46.45 Aligned_cols=85 Identities=20% Similarity=0.132 Sum_probs=43.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC--H-HHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT--R-ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE 120 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~--~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (182)
+.+.+.||+|+|||+.+...+.... .. +.++.++... + +.++|+. .+....++.+...............
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~--GkkVglI~aDt~RiaAvEQLk----~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GK--KKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-Hc--CCcEEEEecCCcchHHHHHHH----HHhhhcCCcEEecCCHHHHHHHHHH
Confidence 4678999999999998665554432 22 4456555542 2 2344444 3333445555433222222111112
Q ss_pred hcC--CC-cEEEEChHHH
Q psy4275 121 LAK--KP-HIVIATPGRL 135 (182)
Q Consensus 121 ~~~--~~-~Ilv~T~~~l 135 (182)
+.. ++ -|+|-|++..
T Consensus 315 lk~~~~~DvVLIDTaGRs 332 (436)
T PRK11889 315 FKEEARVDYILIDTAGKN 332 (436)
T ss_pred HHhccCCCEEEEeCcccc
Confidence 221 22 3777777764
No 286
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.39 E-value=0.043 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=15.6
Q ss_pred EEECCCCChHHHHHHHHHHHhh
Q psy4275 47 IGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~ 68 (182)
++.|+||+|||++.-. ++..+
T Consensus 785 YIyG~PGTGKTATVK~-VLrEL 805 (1164)
T PTZ00112 785 YISGMPGTGKTATVYS-VIQLL 805 (1164)
T ss_pred EEECCCCCCHHHHHHH-HHHHH
Confidence 5899999999998544 33433
No 287
>PRK08727 hypothetical protein; Validated
Probab=96.38 E-value=0.012 Score=43.84 Aligned_cols=35 Identities=17% Similarity=-0.005 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+.+++.||+|+|||-.+.... ..+.+. +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~-~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALC-AAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHH-HHHHHc--CCcEEEEe
Confidence 458999999999997644333 333332 34666664
No 288
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.36 E-value=0.019 Score=47.46 Aligned_cols=73 Identities=16% Similarity=0.053 Sum_probs=53.8
Q ss_pred CChHHHHhhhhhhhC------C----CcEEEECCCCChHHHHHHHHHH-HhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN------D----EDCIGCAKTGSGKTLAFALPIL-QKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~------~----~~~li~~~tg~GKT~~~~~~~~-~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
.+-|||+..+..+.. + +-++|..|-+-|||..+...++ ..+..+..+..+.+++|+...+.+..+.++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 678999999988773 1 2578889999999987663333 3344444566899999999988888777776
Q ss_pred hhcc
Q psy4275 97 LGKV 100 (182)
Q Consensus 97 ~~~~ 100 (182)
....
T Consensus 141 mv~~ 144 (546)
T COG4626 141 MVKR 144 (546)
T ss_pred HHHh
Confidence 5444
No 289
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.35 E-value=0.022 Score=43.00 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=61.7
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH-HHHHHhhccCCceEEEE-EcCCchhhh
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG-DQFLVLGKVMNLRVSII-TGGMDMVDQ 117 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~ 117 (182)
+..|.-.++.|.+|.|||..++-.+.+.+.+. +..++|+...-.- +++. ..+... . ++....+ .|.....+.
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~~-~~l~~R~la~~-s--~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMSE-EELAARLLARL-S--GVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS-H-HHHHHHHHHHH-H--TSTHHHHHCCGCHHHHH
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCCH-HHHHHHHHHHh-h--cchhhhhhccccCHHHH
Confidence 44466788899999999999877777776654 3578888764332 2222 222222 1 1111111 121111111
Q ss_pred h------HHhcCCCcEEE-E----ChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 118 G------KELAKKPHIVI-A----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 118 ~------~~~~~~~~Ilv-~----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
. ..+ .+..+.+ . |++.+...++.... ....+++||+|-+|.+...
T Consensus 90 ~~~~~~~~~l-~~~~l~i~~~~~~~~~~i~~~i~~~~~-~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 90 ERLQAAAEKL-SDLPLYIEDTPSLTIDDIESKIRRLKR-EGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHH-HTSEEEEEESSS-BHHHHHHHHHHHHH-HSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHH-hhCcEEEECCCCCCHHHHHHHHHHHHh-hccCCCEEEechHHHhcCC
Confidence 1 112 2333443 3 44555555544221 1267889999999998874
No 290
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.35 E-value=0.045 Score=44.73 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=24.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+..++.||+|+|||-.+. ++...+.....+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 468999999999997754 33343433322446777754
No 291
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.33 E-value=0.0097 Score=48.61 Aligned_cols=42 Identities=26% Similarity=0.218 Sum_probs=29.6
Q ss_pred ChHHHHhhhhhhhCCC--cEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 29 PTEIQKAIIPHVLNDE--DCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~--~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
..+.|...+..+.+.. =+++.||||||||+. ++.++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 4677777777776643 466779999999998 55666655543
No 292
>KOG1016|consensus
Probab=96.31 E-value=0.022 Score=48.99 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHC---CCCCChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 13 LNPWLIRQCQTI---GVKTPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 13 l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
+-+++.+.++.. |+..+++--.+.+....+ |=.+|+...+|.|||+. .+...+.+.++-....+|+|+|-..|.
T Consensus 247 lapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQ-VisF~diflRhT~AKtVL~ivPiNTlQ 325 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQ-VISFSDIFLRHTKAKTVLVIVPINTLQ 325 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeE-EeehhHHHhhcCccceEEEEEehHHHH
Confidence 455566665433 222333333333333322 45788888999999986 344455555544466899999987774
Q ss_pred HHHHHHHHHhhccC---------CceEEEEEcCCch-hhh---hHHhcCCCcEEEEChHHHHHH
Q psy4275 88 YQIGDQFLVLGKVM---------NLRVSIITGGMDM-VDQ---GKELAKKPHIVIATPGRLADH 138 (182)
Q Consensus 88 ~q~~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~---~~~~~~~~~Ilv~T~~~l~~~ 138 (182)
+ |..++..|.... .+.+.++.++... ..+ ...+..+..|++.-.+++.-+
T Consensus 326 N-WlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL 388 (1387)
T KOG1016|consen 326 N-WLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLL 388 (1387)
T ss_pred H-HHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHH
Confidence 3 444444444331 2456666655433 222 233445778999888887543
No 293
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.31 E-value=0.0064 Score=43.37 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=27.9
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 90 (182)
+.+++++++.|++|+|||..+...+.+.+. . +..++++ +..+|.+.+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~--g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR-K--GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH-T--T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C--CcceeEe-ecCceeccc
Confidence 344789999999999999886555444433 2 4456655 444555544
No 294
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.015 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=19.1
Q ss_pred EEEECCCCChHHHHHHHHHHHhhc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.+++||.|+|||..+.+.+-....
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999998766655443
No 295
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.30 E-value=0.042 Score=43.86 Aligned_cols=50 Identities=14% Similarity=-0.047 Sum_probs=32.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
|.-+++.|++|+|||..++..+...... +.+++|+.-... ..|+....++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs-~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEES-PEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcC-HHHHHHHHHH
Confidence 5678889999999999866555444332 357888876433 3444433333
No 296
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.073 Score=38.33 Aligned_cols=104 Identities=15% Similarity=0.143 Sum_probs=58.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++-.++++|+.+|||.-.+..+-....+ +.++++..|...- . +....+.+....
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD~-------------R--~~~~~V~Sr~G~-------- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAIDT-------------R--YGVGKVSSRIGL-------- 57 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEeccccc-------------c--cccceeeeccCC--------
Confidence 3446889999999999755444444344 5678888884222 1 111111111111
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHhh
Q psy4275 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLKY 178 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~~ 178 (182)
+..-++|-.+..+.+.+..... ..+++.+.+||||-+.. +....+.++.+
T Consensus 58 ~~~A~~i~~~~~i~~~i~~~~~--~~~~~~v~IDEaQF~~~----~~v~~l~~lad 107 (201)
T COG1435 58 SSEAVVIPSDTDIFDEIAALHE--KPPVDCVLIDEAQFFDE----ELVYVLNELAD 107 (201)
T ss_pred cccceecCChHHHHHHHHhccc--CCCcCEEEEehhHhCCH----HHHHHHHHHHh
Confidence 1223556666777777765321 11277999999996554 44445554443
No 297
>PRK05973 replicative DNA helicase; Provisional
Probab=96.29 E-value=0.014 Score=43.60 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHCCCC----------CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEE
Q psy4275 10 DLKLNPWLIRQCQTIGVK----------TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALV 79 (182)
Q Consensus 10 ~~~l~~~i~~~l~~~~~~----------~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~li 79 (182)
..++++-+.+.=.+.||. ..+|. .+...-+..|.-.++.|++|+|||+.++-.+.+.+.+ +.+++|
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vly 97 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVF 97 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEE
Confidence 345555555555555654 24442 2233455567788999999999999987777766544 456888
Q ss_pred EcCCHHHHHHHHHHHHHh
Q psy4275 80 LTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 80 l~p~~~l~~q~~~~~~~~ 97 (182)
+.-... .+++.+.+..+
T Consensus 98 fSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 98 FTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred EEEeCC-HHHHHHHHHHc
Confidence 864433 34454444443
No 298
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.29 E-value=0.063 Score=48.12 Aligned_cols=123 Identities=13% Similarity=0.168 Sum_probs=92.1
Q ss_pred HHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhc--c----------------------------CCCCeeEEEEc
Q psy4275 32 IQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWC--E----------------------------DPYGIFALVLT 81 (182)
Q Consensus 32 ~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~--~----------------------------~~~~~~~lil~ 81 (182)
-|++.++.+..+-+++--..|-.=+|+-+.+.-+..+. . -..++++.||.
T Consensus 731 k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~ 810 (1139)
T COG1197 731 KHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILRELLRGGQVFYVH 810 (1139)
T ss_pred cHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHHhcCCEEEEEe
Confidence 37778888888888888888888888765544433221 0 02378999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH----hcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEec
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE----LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE 157 (182)
|..+-.+++++.++.+... .++++.||.+...+.... +.++.+|+|||. +=+ ..+++.+...+|+|-
T Consensus 811 NrV~~Ie~~~~~L~~LVPE--arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIE-tGIDIPnANTiIIe~ 881 (1139)
T COG1197 811 NRVESIEKKAERLRELVPE--ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIE-TGIDIPNANTIIIER 881 (1139)
T ss_pred cchhhHHHHHHHHHHhCCc--eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eee-cCcCCCCCceEEEec
Confidence 9999999999999998775 678899998876544433 345899999993 123 567899999999999
Q ss_pred cccccc
Q psy4275 158 ADRLSL 163 (182)
Q Consensus 158 ~h~~~~ 163 (182)
||++.-
T Consensus 882 AD~fGL 887 (1139)
T COG1197 882 ADKFGL 887 (1139)
T ss_pred cccccH
Confidence 999764
No 299
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.27 E-value=0.048 Score=44.28 Aligned_cols=86 Identities=23% Similarity=0.208 Sum_probs=44.8
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC--HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhh----h
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT--RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQ----G 118 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 118 (182)
-++++|++|+|||+++.-.+.....+. +.+++++.-. +..+ .+.++.+....++.+.......+.... .
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~a---~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPAA---IEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchHH---HHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 477889999999998765555532222 3456666533 2221 223444445455555433222221111 1
Q ss_pred -HHhcCCCc-EEEEChHHH
Q psy4275 119 -KELAKKPH-IVIATPGRL 135 (182)
Q Consensus 119 -~~~~~~~~-Ilv~T~~~l 135 (182)
....++++ |+|-||+.+
T Consensus 176 ~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHhcCCCEEEEeCCCcc
Confidence 11123454 888999864
No 300
>PRK08116 hypothetical protein; Validated
Probab=96.26 E-value=0.033 Score=42.43 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=25.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
..+++.|++|+|||..+. ++...+... +..++++ +...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~-~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFV-NFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEE-EHHHHHH
Confidence 349999999999998754 344444443 3345555 3334433
No 301
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.029 Score=46.59 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=17.4
Q ss_pred EEEECCCCChHHHHHHHHHHHh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~ 67 (182)
.+++||+|+|||..+...+-..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4999999999999976554443
No 302
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.015 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=18.5
Q ss_pred EEEECCCCChHHHHHHHHHHHhhc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.++.||.|+|||..+...+-....
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhhhh
Confidence 489999999999987666554433
No 303
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.22 E-value=0.039 Score=38.70 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=20.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDP 72 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~ 72 (182)
..++.||.|+||+..+...+...+....
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 4699999999999987766666555543
No 304
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.21 E-value=0.011 Score=46.60 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=22.8
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.+..+++++++||||+|||+.. .+++..+..
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~ 188 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMS-KTLISAIPP 188 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHH-HHHHcccCC
Confidence 3455889999999999999884 445554433
No 305
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.19 E-value=0.033 Score=45.36 Aligned_cols=87 Identities=20% Similarity=0.153 Sum_probs=43.4
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchh----hhhHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMV----DQGKE 120 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 120 (182)
.++++|++|+|||+++.-.+.. +... +.++.++.....-. ...+.++.+....++.+.......... .....
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~-L~~~--g~kV~lV~~D~~R~-aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARY-FKKK--GLKVGLVAADTYRP-AAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHc--CCeEEEecCCCCCH-HHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 5788899999999986555443 3332 44666665432111 123344445555555543321111111 11111
Q ss_pred hcCCCcEEEEChHHH
Q psy4275 121 LAKKPHIVIATPGRL 135 (182)
Q Consensus 121 ~~~~~~Ilv~T~~~l 135 (182)
.....-|+|-|++..
T Consensus 173 ~~~~DvVIIDTAGr~ 187 (437)
T PRK00771 173 FKKADVIIVDTAGRH 187 (437)
T ss_pred hhcCCEEEEECCCcc
Confidence 122234788888655
No 306
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.19 E-value=0.062 Score=39.03 Aligned_cols=40 Identities=15% Similarity=0.056 Sum_probs=29.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
.|.-..+.||+|+|||..++..+...... +.+++|+.-..
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 35678899999999999887666655433 45788887753
No 307
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.015 Score=49.01 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=18.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHhh
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
..+++||.|+|||.++...+-...
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhc
Confidence 358999999999999766555543
No 308
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.17 E-value=0.029 Score=46.72 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=18.7
Q ss_pred EEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.+++||.|+|||..+...+-.....
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 4899999999999876655554433
No 309
>PRK14974 cell division protein FtsY; Provisional
Probab=96.17 E-value=0.067 Score=42.07 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=31.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC---HHHHHHHHHHHHHhhccCCceEE
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT---RELAYQIGDQFLVLGKVMNLRVS 106 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~ 106 (182)
-+++.|++|+|||++....+ ..+... +.+++++... ....+|+..+. ...++.+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a----~~lgv~v~ 199 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKKN--GFSVVIAAGDTFRAGAIEQLEEHA----ERLGVKVI 199 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHHc--CCeEEEecCCcCcHHHHHHHHHHH----HHcCCcee
Confidence 57788999999999854444 333332 4467666544 33445544433 33455543
No 310
>KOG0331|consensus
Probab=96.15 E-value=0.038 Score=45.60 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=56.6
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCcEEEEChHHHHHHHhcCCCCCCC
Q psy4275 73 YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPHIVIATPGRLADHLDTCNTFSLN 148 (182)
Q Consensus 73 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~~~~~~~~~~ 148 (182)
.++++||.|.++--++++...++.. ++++..+||+.+..++...+. .++.|+|+|.- .. +.++++
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV------Aa-RGLDi~ 408 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV------AA-RGLDVP 408 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEccc------cc-ccCCCc
Confidence 3568999999999998887776664 588999999999887776654 36889999932 22 667888
Q ss_pred CccEEEE
Q psy4275 149 RIKFLVL 155 (182)
Q Consensus 149 ~~~~iI~ 155 (182)
++++||-
T Consensus 409 dV~lVIn 415 (519)
T KOG0331|consen 409 DVDLVIN 415 (519)
T ss_pred cccEEEe
Confidence 9998874
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.15 E-value=0.04 Score=42.68 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCc-EEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 43 DED-CIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 43 ~~~-~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
..+ .++.||+|+|||..+....-......
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 456 99999999999999766665555443
No 312
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.019 Score=47.99 Aligned_cols=23 Identities=22% Similarity=-0.036 Sum_probs=18.3
Q ss_pred EEEECCCCChHHHHHHHHHHHhh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+++||.|+|||..+...+-...
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 68999999999999766655443
No 313
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.13 E-value=0.012 Score=45.26 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=26.9
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELA 87 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 87 (182)
.++.||||+||+-..--.+...+.+ +-.-.+++|+|....+
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~-P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQ-PPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCccc-CCCCceEEECCCCCCC
Confidence 5678999999986532222233322 2234799999998875
No 314
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.013 Score=49.46 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+..|+.||.|+|||.++.+.+-....
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccc
Confidence 45778999999999998766655543
No 315
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.11 E-value=0.033 Score=39.86 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+..++.||.|+|||..+...+-....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 45889999999999887655554443
No 316
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.025 Score=45.52 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=19.6
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||.++...+-....
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999998766555444
No 317
>PF12846 AAA_10: AAA-like domain
Probab=96.11 E-value=0.012 Score=44.96 Aligned_cols=25 Identities=32% Similarity=0.270 Sum_probs=19.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
++|+++.|+||+|||..+...+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~ 25 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL 25 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999998876444433
No 318
>KOG1133|consensus
Probab=96.11 E-value=0.0053 Score=51.75 Aligned_cols=43 Identities=26% Similarity=0.340 Sum_probs=35.7
Q ss_pred CChHHHHhhhhhhhC----CCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 28 TPTEIQKAIIPHVLN----DEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.|+++|.+....+.. |+-.++..|||+|||++.+...+..+..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 789999888766554 8899999999999999888777776654
No 319
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.021 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.098 Sum_probs=19.2
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||..+...+-....
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcc
Confidence 4789999999999997665555443
No 320
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.032 Score=43.53 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=33.6
Q ss_pred CCChHHHHhhhhhhhC----CC---cEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 27 KTPTEIQKAIIPHVLN----DE---DCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~----~~---~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
..+.|||...+..+.. ++ -.++.||.|.||+..+...+-..+..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 3678999998877654 33 478999999999998776665555543
No 321
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.023 Score=42.95 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=34.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
++.++++.||+|+|||..+.....+.. .. + .-++.++..+++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA--G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc--C-CeEEEEEHHHHHHHHHHHHh
Confidence 478999999999999988655555554 42 4 34555566777776655443
No 322
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.07 E-value=0.017 Score=40.99 Aligned_cols=48 Identities=17% Similarity=0.086 Sum_probs=32.7
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.++.||+|+|||..++-.+...+.+ +.+++|+..... .+++.+.++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~-~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEES-PEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCC-HHHHHHHHHHc
Confidence 6889999999999887777666543 557888875433 44444444443
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.024 Score=48.03 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.1
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
+..+++||.|+|||..+.+.+-.....
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 358999999999999987666655443
No 324
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.03 E-value=0.04 Score=50.10 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=60.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+++++|++|+..-++.+++.+++... +.++..++|+.+..+....+ .++.+|+|+|.- -. ..+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdI------ie-rGIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI------IE-TGIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECch------hh-ccccccc
Confidence 46899999999988888888877654 46788899998776544433 247899999932 22 5678999
Q ss_pred ccEEEEecccccc
Q psy4275 150 IKFLVLDEADRLS 162 (182)
Q Consensus 150 ~~~iI~DE~h~~~ 162 (182)
++++|++.++++.
T Consensus 880 v~~VIi~~ad~fg 892 (1147)
T PRK10689 880 ANTIIIERADHFG 892 (1147)
T ss_pred CCEEEEecCCCCC
Confidence 9999999888653
No 325
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.00 E-value=0.084 Score=44.68 Aligned_cols=38 Identities=16% Similarity=-0.002 Sum_probs=23.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+.+++.|++|+|||-.+. ++.+.+.....+.+++|+..
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH
Confidence 348899999999997643 33343333222456776654
No 326
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.98 E-value=0.039 Score=49.07 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=60.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++++++|+..-++.+++.+++... +.++..++|+.+..+....+ .++.+|+|+|.- -. ..+++.+
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~i------ie-~GIDIp~ 730 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTI------IE-TGIDIPN 730 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECCh------hh-ccccccc
Confidence 56899999999988888888887643 57899999998765554332 347899999942 22 5678889
Q ss_pred ccEEEEeccccc
Q psy4275 150 IKFLVLDEADRL 161 (182)
Q Consensus 150 ~~~iI~DE~h~~ 161 (182)
++++|++.++++
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999888764
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.98 E-value=0.015 Score=43.34 Aligned_cols=52 Identities=10% Similarity=0.044 Sum_probs=36.2
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
..|..+++.|++|+|||..+.-.+...+.+ +.+++|++-.. -.+++.+.++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~ee-~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALEE-HPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEeeC-CHHHHHHHHHH
Confidence 347789999999999999887777776643 45788887443 33445444443
No 328
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.97 E-value=0.034 Score=43.55 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.9
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
+++++.||+|+|||..+...
T Consensus 52 ~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 57999999999999986543
No 329
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.029 Score=46.82 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=18.4
Q ss_pred EEEECCCCChHHHHHHHHHHHhhc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.++.||.|+|||..+...+-....
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Confidence 589999999999987666555433
No 330
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=95.96 E-value=0.004 Score=44.15 Aligned_cols=45 Identities=31% Similarity=0.324 Sum_probs=28.5
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCC--CCCCCCccEEEEecccccccc
Q psy4275 119 KELAKKPHIVIATPGRLADHLDTCN--TFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 119 ~~~~~~~~Ilv~T~~~l~~~~~~~~--~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+.....++|+|++...+++-..... .+.++ -.++||||||++.+.
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHHH
Confidence 3445578999999998875432211 12333 358999999998764
No 331
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.91 E-value=0.076 Score=41.17 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=14.4
Q ss_pred cEEE-ECCCCChHHHHHHHH
Q psy4275 45 DCIG-CAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li-~~~tg~GKT~~~~~~ 63 (182)
+.++ .||+|+|||..+...
T Consensus 44 ~~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHH
Confidence 4555 899999999885443
No 332
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.90 E-value=0.024 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.149 Sum_probs=19.4
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..++.||.|+|||..+...+-....
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999997666555443
No 333
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.028 Score=47.71 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=19.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||.++...+-....
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999998766655544
No 334
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.041 Score=46.58 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=18.0
Q ss_pred cEEEECCCCChHHHHHHHHHHHh
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
..+++||.|+|||..+...+-..
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35899999999999976665443
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.85 E-value=0.1 Score=39.83 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=23.9
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+-+.+.|++|+|||+++.-.+... ... +.++.++.-
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~--g~~V~li~~ 108 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQ--GKSVLLAAG 108 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hhc--CCEEEEEeC
Confidence 356677999999999866555443 222 456777763
No 336
>PTZ00293 thymidine kinase; Provisional
Probab=95.83 E-value=0.045 Score=40.05 Aligned_cols=38 Identities=13% Similarity=-0.049 Sum_probs=26.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
|+=.++.||+++|||.-.+..+.....+ +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEec
Confidence 4456889999999998755554444333 4578888775
No 337
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.79 E-value=0.025 Score=44.42 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=22.9
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
+..+++++++|+||+|||+.. -+++..+..
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~ 186 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPA 186 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCC
Confidence 445889999999999999884 555555543
No 338
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.79 E-value=0.019 Score=43.47 Aligned_cols=45 Identities=27% Similarity=0.330 Sum_probs=27.9
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
..+.+|++|++++.+.+.- +.+..-++++|+||+||+.+. .+++.
T Consensus 105 ~~IPt~eeL~LPevlk~la------------------~~kRGLviiVGaTGSGKSTtm-AaMi~ 149 (375)
T COG5008 105 TKIPTFEELKLPEVLKDLA------------------LAKRGLVIIVGATGSGKSTTM-AAMIG 149 (375)
T ss_pred ccCCcHHhcCCcHHHHHhh------------------cccCceEEEECCCCCCchhhH-HHHhc
Confidence 3466666666666554422 112334788999999999884 34443
No 339
>KOG2373|consensus
Probab=95.78 E-value=0.0033 Score=49.09 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=22.9
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.|.-.++.||||+|||+...-+.++.+.+
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL~~Q 300 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDLFTQ 300 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHHHhh
Confidence 36679999999999998766666666555
No 340
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.77 E-value=0.091 Score=37.15 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=33.7
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.++.|++|+|||..+.-.+.. .+.+++|+.........+.+.++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHHH
Confidence 578999999999987766544 1457889988777766666665543
No 341
>PRK10436 hypothetical protein; Provisional
Probab=95.75 E-value=0.026 Score=46.28 Aligned_cols=39 Identities=31% Similarity=0.294 Sum_probs=25.3
Q ss_pred hHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 30 TEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 30 ~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.+.|.+.+..+.. +.-++++||||+|||+.. ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 4445555544433 456889999999999984 44555443
No 342
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.75 E-value=0.055 Score=42.02 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=22.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
+++.++.|++|+|||..+...+-. +... +..+.++
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~-l~~~--g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANE-LAKK--GVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH-HHHc--CCCEEEE
Confidence 468999999999999875444333 3332 3344444
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=95.75 E-value=0.19 Score=41.01 Aligned_cols=86 Identities=22% Similarity=0.189 Sum_probs=44.2
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC--HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhh----
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT--RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQG---- 118 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 118 (182)
-++++|++|+|||+++.-.+....... +.+++++.-. +..+ .+.++.+....++.+.......+.....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~--G~kV~lV~~D~~R~aa---~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKK--KKKVLLVAADVYRPAA---IEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhc--CCcEEEEEccccchHH---HHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 367889999999998765555433221 3456655532 2222 2234444555566654332122211111
Q ss_pred -HHhcCCC-cEEEEChHHH
Q psy4275 119 -KELAKKP-HIVIATPGRL 135 (182)
Q Consensus 119 -~~~~~~~-~Ilv~T~~~l 135 (182)
....+++ -|+|-|++.+
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 1112334 4888999865
No 344
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.041 Score=43.39 Aligned_cols=43 Identities=14% Similarity=-0.019 Sum_probs=31.3
Q ss_pred ChHHHHhhhhhhhC--C---CcEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 29 PTEIQKAIIPHVLN--D---EDCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~--~---~~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
+.|||...+..+.. + +..++.||.|.||+..+...+...+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 35788888877654 2 3677899999999998776665555543
No 345
>PRK13764 ATPase; Provisional
Probab=95.73 E-value=0.029 Score=47.38 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
+++++++||||+|||+.. .+++..+..
T Consensus 257 ~~~ILIsG~TGSGKTTll-~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFA-QALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHhh
Confidence 678999999999999874 445555443
No 346
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.72 E-value=0.035 Score=42.18 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=25.7
Q ss_pred hHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 30 TEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 30 ~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.+.|.+.+..+.. +..+++.|+||+|||+.. ..++..+.
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 4556665555443 446889999999999985 44444443
No 347
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.71 E-value=0.077 Score=42.93 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=33.1
Q ss_pred CHHHHHHHHHCCCCC--ChHHH-----HhhhhhhhCCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 14 NPWLIRQCQTIGVKT--PTEIQ-----KAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 14 ~~~i~~~l~~~~~~~--~~~~Q-----~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
++|+.=.+...|+.. +.+-| ..+++.+.++.|++..||+|+|||-.+.....+
T Consensus 173 dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 173 EEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 456666666667642 22221 122255566889999999999999776543444
No 348
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.024 Score=44.55 Aligned_cols=44 Identities=9% Similarity=-0.020 Sum_probs=31.8
Q ss_pred CChHHHHhhhhhhhC----C---CcEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 28 TPTEIQKAIIPHVLN----D---EDCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~---~~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
+..|||...|..+.+ + +-.++.||.|.||+..+...+...+..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~ 52 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQ 52 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 356788888777653 3 3567999999999998877666665543
No 349
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.70 E-value=0.057 Score=39.55 Aligned_cols=38 Identities=13% Similarity=0.017 Sum_probs=28.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.|.-.++.|++|+|||..++..+.....+ +.+++++.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~ 55 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDT 55 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEC
Confidence 35668899999999999877776665433 457888843
No 350
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.04 Score=47.23 Aligned_cols=70 Identities=23% Similarity=0.147 Sum_probs=54.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC-CeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY-GIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
.+++.|.+++... ....++.++.|+|||.+...-+.+.+..... ..+++.++=|+-.+.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999988666 5678889999999999876666666555432 23688899999999988888877765
No 351
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=95.68 E-value=0.061 Score=41.97 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=41.7
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+...++.|.+-..++.+..-.+-.||.|+|||+.+.....+.+.+..-. ++|..=|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 4467889999988888876677778999999999887777776664322 4454445
No 352
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.67 E-value=0.036 Score=40.79 Aligned_cols=45 Identities=11% Similarity=-0.083 Sum_probs=30.9
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCCHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPTRE 85 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~ 85 (182)
..|.-..+.|++|+|||..++..+....... .....++++.....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 3467789999999999998776666554332 01257888877543
No 353
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.64 E-value=0.073 Score=41.92 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=17.0
Q ss_pred cEEEECCCCChHHHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~ 66 (182)
..+++||+|+|||..+...+-.
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999886544444
No 354
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.56 E-value=0.032 Score=43.78 Aligned_cols=44 Identities=23% Similarity=0.243 Sum_probs=28.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 90 (182)
++++++.|++|+|||..+... ...+... +..++++.. ..+...+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aI-a~~l~~~--g~~V~y~t~-~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCI-AKELLDR--GKSVIYRTA-DELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHH-HHHHHHC--CCeEEEEEH-HHHHHHH
Confidence 578999999999999865433 3333333 446666544 4555544
No 355
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.55 E-value=0.16 Score=41.22 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=62.4
Q ss_pred HHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-EcC
Q psy4275 33 QKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII-TGG 111 (182)
Q Consensus 33 Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~ 111 (182)
-.+.+.-+..|.-+++.|++|.|||..++-.+.+..... +..++++.-. .-.+++...+-. ...++....+ .|.
T Consensus 184 LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~--g~~v~~fSlE-m~~~~l~~Rl~~--~~~~v~~~~~~~~~ 258 (421)
T TIGR03600 184 LDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALRE--GKPVLFFSLE-MSAEQLGERLLA--SKSGINTGNIRTGR 258 (421)
T ss_pred HHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC-CCHHHHHHHHHH--HHcCCCHHHHhcCC
Confidence 333444455577888999999999998776665654333 4457777532 223333222211 1112222111 222
Q ss_pred Cchhhhh------HHhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 112 MDMVDQG------KELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 112 ~~~~~~~------~~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
....++. ..+ .+..+.|. |++.+...++..+. ....+++||+|-.|.|..
T Consensus 259 l~~~~~~~~~~~~~~l-~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 259 FNDSDFNRLLNAVDRL-SEKDLYIDDTGGLTVAQIRSIARRIKR-KKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred CCHHHHHHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEecccccCC
Confidence 2221111 111 23345553 34444444432111 122578999999999875
No 356
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.54 E-value=0.029 Score=42.58 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=29.3
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
+..+.+++++|+||+|||+.. .+++..+... ..+++.+-...++
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 345789999999999999985 5555555543 2456666544433
No 357
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.091 Score=44.79 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=20.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+..++.||.|+|||..+...+-....
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcC
Confidence 46789999999999997666655544
No 358
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.53 E-value=0.028 Score=42.56 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=30.0
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
..|.-.++.|++|+|||..++-.+.+.+.+ +.+++|+.-.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~E 73 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTVE 73 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEec
Confidence 346778999999999999887776665544 4477887743
No 359
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.52 E-value=0.27 Score=34.51 Aligned_cols=84 Identities=25% Similarity=0.228 Sum_probs=41.4
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhh-----hh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT--PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVD-----QG 118 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 118 (182)
.++.|++|+|||..+...+.... +. +.+++++. +.+.- ..+.+..+....++.+........... ..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~-~~--g~~v~~i~~D~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK-KK--GKKVLLVAADTYRPA---AIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIE 76 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH-HC--CCcEEEEEcCCCChH---HHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57889999999998655544432 22 34565554 22211 122344444444555433222111110 01
Q ss_pred HHhcCCC-cEEEEChHHH
Q psy4275 119 KELAKKP-HIVIATPGRL 135 (182)
Q Consensus 119 ~~~~~~~-~Ilv~T~~~l 135 (182)
....++. -|++-||+..
T Consensus 77 ~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 77 HAREENFDVVIVDTAGRL 94 (173)
T ss_pred HHHhCCCCEEEEECcccc
Confidence 1123344 4788888864
No 360
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.51 E-value=0.17 Score=39.17 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=16.8
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+.++.||+|+|||..+....
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 368999999999998864433
No 361
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.51 E-value=0.085 Score=37.31 Aligned_cols=45 Identities=13% Similarity=0.116 Sum_probs=29.7
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
.+++.|++|+|||..+...+... +..++++......-+++.+.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~------~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS------GLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc------CCCcEeCcCCCCChHHHHHHHH
Confidence 47899999999999876655442 2246677765555555544443
No 362
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.038 Score=44.01 Aligned_cols=27 Identities=11% Similarity=-0.123 Sum_probs=21.2
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
-.++.||.|+||+..+...+-..+..+
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 488999999999998776666665544
No 363
>KOG0341|consensus
Probab=95.44 E-value=0.18 Score=40.31 Aligned_cols=138 Identities=15% Similarity=0.214 Sum_probs=89.5
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCC---------CChHHHHhhhhhhhCCCcEEEECCCCCh-----------HHHHHHH
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVK---------TPTEIQKAIIPHVLNDEDCIGCAKTGSG-----------KTLAFAL 62 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~---------~~~~~Q~~~~~~~~~~~~~li~~~tg~G-----------KT~~~~~ 62 (182)
|....+-++|+.+++...+..|+-. -|..+|..+=.++.+ .-.+=+|-.|.. |.-+-+.
T Consensus 333 DEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVK-PvtvNVGRAGAAsldViQevEyVkqEaKiV 411 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVK-PVTVNVGRAGAASLDVIQEVEYVKQEAKIV 411 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhccc-ceEEecccccccchhHHHHHHHHHhhhhhh
Confidence 3445667889999999998877543 367777766655543 223333444432 2222234
Q ss_pred HHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCcEEEEChHHHHHH
Q psy4275 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPHIVIATPGRLADH 138 (182)
Q Consensus 63 ~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~ 138 (182)
++++.+... .+.++|.+-.++=++.+++.+--. |+....++|++....+...+. ++.+|+|+|.-
T Consensus 412 ylLeCLQKT--~PpVLIFaEkK~DVD~IhEYLLlK----GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV----- 480 (610)
T KOG0341|consen 412 YLLECLQKT--SPPVLIFAEKKADVDDIHEYLLLK----GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV----- 480 (610)
T ss_pred hHHHHhccC--CCceEEEeccccChHHHHHHHHHc----cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc-----
Confidence 455555554 568999999999888887775432 788999999998877665543 46799999943
Q ss_pred HhcCCCCCCCCccEEE
Q psy4275 139 LDTCNTFSLNRIKFLV 154 (182)
Q Consensus 139 ~~~~~~~~~~~~~~iI 154 (182)
.+ +.+++.++..+|
T Consensus 481 -AS-KGLDFp~iqHVI 494 (610)
T KOG0341|consen 481 -AS-KGLDFPDIQHVI 494 (610)
T ss_pred -hh-ccCCCccchhhc
Confidence 22 555666655443
No 364
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.39 E-value=0.11 Score=45.58 Aligned_cols=20 Identities=20% Similarity=-0.069 Sum_probs=16.5
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+...++.||+|+|||..+-.
T Consensus 347 ~~~lll~GppG~GKT~lAk~ 366 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKS 366 (775)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999987543
No 365
>KOG0739|consensus
Probab=95.38 E-value=0.15 Score=39.49 Aligned_cols=39 Identities=10% Similarity=0.114 Sum_probs=26.8
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 90 (182)
.+++.||+|+||++.+-..+-+. + .+.+-+.+..|+..|
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA------n-STFFSvSSSDLvSKW 206 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA------N-STFFSVSSSDLVSKW 206 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc------C-CceEEeehHHHHHHH
Confidence 68999999999987754333332 2 566777777776554
No 366
>PHA00012 I assembly protein
Probab=95.38 E-value=0.21 Score=39.03 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=20.0
Q ss_pred EEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.++.|..|+|||+.+..-+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999999988766665554
No 367
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.35 E-value=0.043 Score=46.25 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=25.6
Q ss_pred hHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 30 TEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 30 ~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+.|.+.+..+.. +..++++||||+|||+.. ..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 4555555555443 456789999999999984 4555554
No 368
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.33 E-value=0.034 Score=39.85 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=27.9
Q ss_pred CChHHHHhhhhhh-hCCCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 28 TPTEIQKAIIPHV-LNDEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 28 ~~~~~Q~~~~~~~-~~~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
...+.|.+.+... ..+.++++.||||+|||+.. ..++..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~ 48 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAF 48 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence 4566677766554 44889999999999999874 334443
No 369
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=95.30 E-value=0.022 Score=48.75 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=43.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhh--hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 14 NPWLIRQCQTIGVKTPTEIQKAIIPHV--LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 14 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~--~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
++++.+.+++.+.. .++....+|.. ...+|+++.|.||+|||.+ +..++..+.++ +.++||.-|.-+...
T Consensus 156 ~~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~~-i~~LL~~ir~R--GdrAIIyD~~GeFv~ 227 (732)
T PRK13700 156 PKDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEV-IRRLANYARQR--GDMVVIYDRSGEFVK 227 (732)
T ss_pred HHHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHHH-HHHHHHHHHHc--CCeEEEEeCCCchHH
Confidence 35677777765532 22333333332 3368999999999999997 56677666554 345555555544433
No 370
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.28 E-value=0.23 Score=35.17 Aligned_cols=119 Identities=17% Similarity=0.068 Sum_probs=55.3
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCC
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (182)
+.+..+.|-|||++++-.++..+-. +.+|+++-=.+.-. ..-+.+-+...-++.... .|....+.....- .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~-~g~~f~~~~~~~~---~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGR--YSGELKALKKLPNVEIER-FGKGFVWRMNEEE---E 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS----HHHHHHGGGT--EEEE---TT----GGGHH---H
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCC--CcCHHHHHHhCCeEEEEE-cCCcccccCCCcH---H
Confidence 5566789999999988777776655 66888887655511 112222222222233322 1111111000000 0
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHHh
Q psy4275 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFLK 177 (182)
Q Consensus 126 ~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~~ 177 (182)
+ ........+..++ .+.-...+++|+||+-...+.+.....+.+..+.
T Consensus 77 ~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~ 124 (172)
T PF02572_consen 77 D--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLE 124 (172)
T ss_dssp H--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHH
T ss_pred H--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHH
Confidence 0 0011112222222 1224568899999999999988877766666554
No 371
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.25 E-value=0.053 Score=46.97 Aligned_cols=21 Identities=24% Similarity=0.148 Sum_probs=17.1
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
.++++.||+|+|||..+....
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 489999999999998864443
No 372
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.096 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=17.1
Q ss_pred EEEECCCCChHHHHHHHHHHHh
Q psy4275 46 CIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~ 67 (182)
.+++||.|+|||+++.+.+...
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999998876655443
No 373
>PF05729 NACHT: NACHT domain
Probab=95.24 E-value=0.12 Score=35.64 Aligned_cols=26 Identities=23% Similarity=0.015 Sum_probs=18.2
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
-+++.|++|+|||+.+...+......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc
Confidence 36889999999999865444444333
No 374
>PHA00350 putative assembly protein
Probab=95.23 E-value=0.13 Score=41.27 Aligned_cols=25 Identities=12% Similarity=-0.028 Sum_probs=17.9
Q ss_pred EEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.++.|.+|+|||..++-..+....+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk 28 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALK 28 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHH
Confidence 4788999999999877644433343
No 375
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.22 E-value=0.16 Score=40.89 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=20.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.|+.+.+.||+|+|||..+. .+...+..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~-~i~~~I~~ 194 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ-KIAQAITR 194 (415)
T ss_pred CCCEEEEECCCCCChhHHHH-HHHHhhcc
Confidence 47889999999999998643 34444433
No 376
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.21 E-value=0.11 Score=42.56 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=23.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+.+++.||+|+|||-.+. ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH
Confidence 458999999999997744 333333332 456777753
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.21 E-value=0.051 Score=40.41 Aligned_cols=42 Identities=7% Similarity=-0.052 Sum_probs=30.2
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
+..+...++.|++|+|||+.+...+...+.+ +.++++++...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e~ 62 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQL 62 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCCC
Confidence 3447788999999999999876665554333 45788888544
No 378
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.18 Score=42.13 Aligned_cols=81 Identities=14% Similarity=0.268 Sum_probs=57.8
Q ss_pred HHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCcEEEEChHHHHHH
Q psy4275 63 PILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPHIVIATPGRLADH 138 (182)
Q Consensus 63 ~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~ 138 (182)
.++..+.......++||.+.++..++.++..+... |+++..++|+.....+.+.+. +..+|+|+|--.
T Consensus 262 ~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva---- 333 (513)
T COG0513 262 ELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA---- 333 (513)
T ss_pred HHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh----
Confidence 33444444443447999999999999877666554 789999999998776665543 478999999443
Q ss_pred HhcCCCCCCCCccEEE
Q psy4275 139 LDTCNTFSLNRIKFLV 154 (182)
Q Consensus 139 ~~~~~~~~~~~~~~iI 154 (182)
. +.++++++++||
T Consensus 334 --a-RGiDi~~v~~Vi 346 (513)
T COG0513 334 --A-RGLDIPDVSHVI 346 (513)
T ss_pred --h-ccCCccccceeE
Confidence 2 556777777665
No 379
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.18 E-value=0.047 Score=40.22 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=35.6
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
..|...++.|++|+|||..++-.+.+.+.+. +.++++++-.... .++.+.++.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~ee~~-~~l~~~~~s~ 70 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSFEEPP-EELIENMKSF 70 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEESSS-H-HHHHHHHHTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEecCCH-HHHHHHHHHc
Confidence 3467899999999999999887777776662 2267777754333 4444444443
No 380
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.18 E-value=0.048 Score=41.31 Aligned_cols=30 Identities=13% Similarity=-0.023 Sum_probs=22.8
Q ss_pred hhhhhhhCCCcEEEECCCCChHHHHHHHHH
Q psy4275 35 AIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 35 ~~~~~~~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
++...+..++++++.||+|+|||..+....
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 334445568899999999999999875443
No 381
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.17 E-value=0.056 Score=44.73 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=26.4
Q ss_pred ChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 29 PTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+.+.|.+.+..+... .-++++||||+|||+.. ..++..+.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 355566666555542 34689999999999985 44555544
No 382
>PRK09183 transposase/IS protein; Provisional
Probab=95.16 E-value=0.042 Score=41.64 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=29.5
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
+..+.++++.||+|+|||..+.......... +..+.++. ...+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEe-HHHHHHH
Confidence 4558899999999999998765554333222 44666654 3344433
No 383
>PRK04328 hypothetical protein; Provisional
Probab=95.16 E-value=0.045 Score=41.18 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=34.4
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
..|...++.|++|+|||..++-.+.+.+.+ +..++|+.-.. -.+++.+.++.
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis~ee-~~~~i~~~~~~ 72 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVALEE-HPVQVRRNMRQ 72 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEeeC-CHHHHHHHHHH
Confidence 346788999999999999877777776544 44677776433 23344444443
No 384
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=95.14 E-value=0.2 Score=42.40 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=52.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.|+++..++.+++.+... ++.+..++|+.+..++...+ .++.+|+|+|.- -. ..+++.+
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv------~a-rGIDip~ 325 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDV------AA-RGLHIDG 325 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehh------hh-cCCCccC
Confidence 568999999999999888877654 68899999988765544333 236789999932 12 4567777
Q ss_pred ccEEEEec
Q psy4275 150 IKFLVLDE 157 (182)
Q Consensus 150 ~~~iI~DE 157 (182)
++++|.-+
T Consensus 326 V~~VInyd 333 (572)
T PRK04537 326 VKYVYNYD 333 (572)
T ss_pred CCEEEEcC
Confidence 77777543
No 385
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.14 E-value=0.016 Score=42.71 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.5
Q ss_pred EEEECCCCChHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~ 62 (182)
+++.|++|+|||....-
T Consensus 1 ~vv~G~pGsGKSt~i~~ 17 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKK 17 (234)
T ss_pred CEEEcCCCCCHHHHHHH
Confidence 36889999999987433
No 386
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.13 E-value=0.082 Score=37.77 Aligned_cols=57 Identities=19% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccC-------CCCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCED-------PYGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-------~~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
.|.-.++.|++|+|||...+-.+....... ..+.+++|+..... ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 477799999999999998766666555421 13568888887766 4566667766654
No 387
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.076 Score=42.95 Aligned_cols=35 Identities=26% Similarity=0.155 Sum_probs=23.0
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
-+++.||+|+|||+.+.-.+....... +.++.+++
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit 259 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYT 259 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEec
Confidence 477889999999998766655443332 33455554
No 388
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.08 E-value=0.27 Score=40.36 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=32.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
|.-+++.|++|+|||+.++..+.....+ +.+++|+..... ..|+.....+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs-~~qi~~ra~r 143 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEES-LQQIKMRAIR 143 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCC-HHHHHHHHHH
Confidence 5678889999999999876555544332 347888876543 3455444333
No 389
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.08 E-value=0.035 Score=39.21 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=17.6
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
++++.|+.|+|||+.. .-+++.+..
T Consensus 1 ~i~iTG~pG~GKTTll-~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLL-KKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHH-HHHHHHHHH
T ss_pred CEEEECcCCCCHHHHH-HHHHHHhhc
Confidence 4789999999999984 445555543
No 390
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=95.07 E-value=0.15 Score=41.44 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=38.1
Q ss_pred CCcEEEEChHHHHHHHhc----CCC-CCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 124 KPHIVIATPGRLADHLDT----CNT-FSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 124 ~~~Ilv~T~~~l~~~~~~----~~~-~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
.++|+|++|=-+.-.+.. .+. -.++++.++|+|.+|.|.-.++-.....+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~ 185 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVF 185 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHH
Confidence 579999999999877763 122 25788999999999998888775554444
No 391
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.07 E-value=0.11 Score=41.76 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=34.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccC-CCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCED-PYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG 110 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 110 (182)
.+.++++.|+||+||+..+ ..++..... ..++++-+=|- ...+..... ..+|..-+.++|
T Consensus 100 ~~~~vLi~GetGtGKel~A--~~iH~~s~r~~~~PFI~~NCa------~~~en~~~~-eLFG~~kGaftG 160 (403)
T COG1221 100 SGLPVLIIGETGTGKELFA--RLIHALSARRAEAPFIAFNCA------AYSENLQEA-ELFGHEKGAFTG 160 (403)
T ss_pred CCCcEEEecCCCccHHHHH--HHHHHhhhcccCCCEEEEEHH------HhCcCHHHH-HHhccccceeec
Confidence 3789999999999999887 334443333 34554443322 122222221 145666666666
No 392
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.05 E-value=0.024 Score=45.32 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=39.0
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIIT 109 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 109 (182)
|+++.||||+|||..++++-+... ...++++-|.-++....+...+.. |.+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 578999999999998776654432 246888989888876655554432 55555554
No 393
>PRK05748 replicative DNA helicase; Provisional
Probab=95.04 E-value=0.38 Score=39.40 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=60.6
Q ss_pred hhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH-HHhhccCCceEE-EEEcCCc
Q psy4275 36 IIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF-LVLGKVMNLRVS-IITGGMD 113 (182)
Q Consensus 36 ~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~-~~~~~~~~~~~~-~~~~~~~ 113 (182)
...-+..|.-+++.|.+|.|||..++-.+.+...+. +..++++... .-.+|+...+ .... ++... ...|...
T Consensus 196 ~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~~~--g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~ 269 (448)
T PRK05748 196 MTSGLQPNDLIIVAARPSVGKTAFALNIAQNVATKT--DKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLT 269 (448)
T ss_pred hcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHHhC--CCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCC
Confidence 333344567788899999999998776666554332 3356666432 2233443332 2221 12211 1123222
Q ss_pred hhhhhH-----HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 114 MVDQGK-----ELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 114 ~~~~~~-----~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
..++.. ....+..+.|. |++.+...+++... ....+++||+|-.|.|..
T Consensus 270 ~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~~ 328 (448)
T PRK05748 270 DDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQG 328 (448)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcCC
Confidence 222111 11123445553 44555544433211 112578999999998853
No 394
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.01 E-value=0.23 Score=38.99 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=29.0
Q ss_pred hHHHHhhhhhhhC--C---CcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 30 TEIQKAIIPHVLN--D---EDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 30 ~~~Q~~~~~~~~~--~---~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.||+...|..+.. + +..++.||.|.|||..+...+-..+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 5788888877664 2 3578999999999988766655544
No 395
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=95.00 E-value=0.041 Score=44.18 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=27.0
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
...+|+++.|.||+|||.+ +..++..+..+ +.+++|.-|.-+.
T Consensus 13 ~e~~~~li~G~~GsGKT~~-i~~ll~~~~~~--g~~~iI~D~kg~~ 55 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQA-IRHLLDQIRAR--GDRAIIYDPKGEF 55 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHH-HHHHHHHHHHT--T-EEEEEEETTHH
T ss_pred hhhCcEEEECCCCCCHHHH-HHHHHHHHHHc--CCEEEEEECCchH
Confidence 3468999999999999975 56666666554 3345555555444
No 396
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.99 E-value=0.065 Score=39.63 Aligned_cols=44 Identities=14% Similarity=-0.114 Sum_probs=30.1
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTR 84 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~ 84 (182)
..|.-..+.|++|+|||..+...+.......+ .+..++++....
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 34677899999999999987766655433321 124688887544
No 397
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.99 E-value=0.14 Score=41.10 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=19.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
|+..++.+|.|+|||+.+. .+...+..
T Consensus 169 GQR~lIvgppGvGKTTLaK-~Ian~I~~ 195 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQ-NIANSITT 195 (416)
T ss_pred CceEEEeCCCCCChhHHHH-HHHHHHHh
Confidence 7889999999999997643 34444433
No 398
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.94 E-value=0.13 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=21.3
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
+-+|+..++.||.|+|||+.+ -.+...+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhcccc
Confidence 345889999999999999753 344444433
No 399
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.92 E-value=0.065 Score=40.97 Aligned_cols=43 Identities=16% Similarity=-0.035 Sum_probs=32.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
.=.=+.||.|+|||..++..+...... +..++|+....++-.+
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~~aq~~---g~~a~fIDtE~~l~p~ 103 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVANAQKP---GGKAAFIDTEHALDPE 103 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHHHhhcC---CCeEEEEeCCCCCCHH
Confidence 345567999999999988877776555 4488998887776444
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.90 E-value=0.043 Score=41.46 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=38.0
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
+..|+..++.|++|+|||+.++-.+...+.. +..+++++-... ..++.+.+..+
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~-~~~l~~~~~~~ 73 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEES-PEELLENARSF 73 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCC-HHHHHHHHHHc
Confidence 3447889999999999999988777777666 456788775433 34444444443
No 401
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.87 E-value=0.054 Score=40.98 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=30.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc---CCCCeeEEEEcCCHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE---DPYGIFALVLTPTREL 86 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~---~~~~~~~lil~p~~~l 86 (182)
|.-.=++|++|+|||-.++-.++..... .+.+.+++|+......
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 4556788999999998776665554433 2235689999866543
No 402
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.87 E-value=0.042 Score=45.09 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=40.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIIT 109 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 109 (182)
.|+++.||||+|||..++++.+-. . +..+++.-|--++....+...++. |.+|.++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~--~~s~iV~D~KgEl~~~t~~~r~~~----G~~V~vld 101 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y--PGSMIVTDPKGELYEKTAGYRKKR----GYKVYVLD 101 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c--cCCEEEEECCCcHHHHHHHHHHHC----CCEEEEee
Confidence 479999999999999987776532 2 226888889888876666555544 44555554
No 403
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=94.86 E-value=0.12 Score=44.24 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH--HHHHHHHHHHHhh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE--LAYQIGDQFLVLG 98 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~--l~~q~~~~~~~~~ 98 (182)
.+|.++.|+||+|||..+...+.+.+.. +..++++-|-.. +...+...++..+
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 5799999999999998864444444433 446888888765 5555555555543
No 404
>PRK12377 putative replication protein; Provisional
Probab=94.84 E-value=0.12 Score=38.89 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=27.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
..++++.||+|+|||..+... ...+... +..++++ +..++...+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AI-a~~l~~~--g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAI-GNRLLAK--GRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHHHc--CCCeEEE-EHHHHHHHHH
Confidence 357899999999999875433 3333333 3345444 4455655543
No 405
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.82 E-value=0.22 Score=38.94 Aligned_cols=87 Identities=22% Similarity=0.187 Sum_probs=46.9
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchh-----hhhH
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMV-----DQGK 119 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 119 (182)
-++++|-+|+|||++. .-+.+.+.++ +.++++.+-..--+ --.+.++.|.+..|+.+.....+.... ....
T Consensus 141 Vil~vGVNG~GKTTTI-aKLA~~l~~~--g~~VllaA~DTFRA-aAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 141 VILFVGVNGVGKTTTI-AKLAKYLKQQ--GKSVLLAAGDTFRA-AAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred EEEEEecCCCchHhHH-HHHHHHHHHC--CCeEEEEecchHHH-HHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 4677899999999984 3444444443 55666666432221 112345555555677776643222211 1112
Q ss_pred HhcCCCc-EEEEChHHH
Q psy4275 120 ELAKKPH-IVIATPGRL 135 (182)
Q Consensus 120 ~~~~~~~-Ilv~T~~~l 135 (182)
...++.+ +++-|.+++
T Consensus 217 Akar~~DvvliDTAGRL 233 (340)
T COG0552 217 AKARGIDVVLIDTAGRL 233 (340)
T ss_pred HHHcCCCEEEEeCcccc
Confidence 2223444 566788777
No 406
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.77 E-value=0.35 Score=39.38 Aligned_cols=117 Identities=16% Similarity=0.067 Sum_probs=59.5
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE-EEcCCchhhh
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI-ITGGMDMVDQ 117 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 117 (182)
-+..|.-.++.|++|+|||..++-.+.+..... +..++++...- -..++.+.+..... ++.... ..|.....++
T Consensus 191 G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~--g~~vl~~SlEm-~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~ 265 (434)
T TIGR00665 191 GLQPSDLIILAARPSMGKTAFALNIAENAAIKE--GKPVAFFSLEM-SAEQLAMRMLSSES--RVDSQKLRTGKLSDEDW 265 (434)
T ss_pred CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhC--CCeEEEEeCcC-CHHHHHHHHHHHhc--CCCHHHhccCCCCHHHH
Confidence 344567788899999999998776666554432 34566665432 22333333222211 222111 1222222211
Q ss_pred h------HHhcCCCcEEE-----EChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 118 G------KELAKKPHIVI-----ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 118 ~------~~~~~~~~Ilv-----~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
. ..+ .+..+.| .|++.+...++.... -..+++||+|=.+.|..
T Consensus 266 ~~~~~a~~~l-~~~~l~i~d~~~~~~~~i~~~i~~~~~--~~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 266 EKLTSAAGKL-SEAPLYIDDTPGLTITELRAKARRLKR--EHGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHH--hcCCCEEEEcchHhcCC
Confidence 1 111 2334555 244555544433211 12378999999998854
No 407
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.75 E-value=0.045 Score=47.91 Aligned_cols=55 Identities=18% Similarity=0.118 Sum_probs=42.3
Q ss_pred HhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHH
Q psy4275 120 ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFF 175 (182)
Q Consensus 120 ~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~ 175 (182)
.++....|++.||..+..=+-. +.++++++..+||||||++.......++..+.+
T Consensus 3 ~ly~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr 57 (814)
T TIGR00596 3 KVYLEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYR 57 (814)
T ss_pred hHhhcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHH
Confidence 3456778999999999654434 557899999999999999987777676655543
No 408
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.26 Score=37.56 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=18.2
Q ss_pred CcEEEECCCCChHHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
....+.|++|+|||..+...+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~ 98 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ 98 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 57889999999999986655444
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.65 E-value=0.098 Score=38.50 Aligned_cols=52 Identities=15% Similarity=0.014 Sum_probs=35.1
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.|...++.|++|+|||..+...+...+.+ +.+++|+..... .+++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e~~-~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLEER-EERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCC-HHHHHHHHHHc
Confidence 36678899999999998877666665544 457888876543 35554444443
No 410
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=94.62 E-value=0.075 Score=48.49 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=44.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCC--CCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDP--YGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~--~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
+.+.++.|..|||||.+..--++..+...+ .-.++++++.|++-+.++...+..
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 679999999999999998777788777742 335899999999999888766554
No 411
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=94.59 E-value=0.29 Score=39.79 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=52.8
Q ss_pred hccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCC
Q psy4275 68 WCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCN 143 (182)
Q Consensus 68 ~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~ 143 (182)
+.+.....++||.++++.-++.+++.++. .++++..++|+.+..++...+ .+..+|+|+|.- .. .
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~------~~-~ 307 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDV------AA-R 307 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccc------cc-c
Confidence 33333356899999999999988887765 378899999988765554332 246789999932 12 4
Q ss_pred CCCCCCccEEE
Q psy4275 144 TFSLNRIKFLV 154 (182)
Q Consensus 144 ~~~~~~~~~iI 154 (182)
.+++.++++||
T Consensus 308 GiDip~v~~VI 318 (434)
T PRK11192 308 GIDIDDVSHVI 318 (434)
T ss_pred CccCCCCCEEE
Confidence 45677777666
No 412
>KOG0058|consensus
Probab=94.58 E-value=0.054 Score=46.17 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.0
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccC
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCED 71 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~ 71 (182)
..|+.+-++||.|+|||.++ .++.++++-
T Consensus 492 ~pGe~vALVGPSGsGKSTia--sLL~rfY~P 520 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTIA--SLLLRFYDP 520 (716)
T ss_pred CCCCEEEEECCCCCCHHHHH--HHHHHhcCC
Confidence 34888999999999999987 666666653
No 413
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=94.56 E-value=0.28 Score=40.26 Aligned_cols=70 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..++||.|+++.-++.+++.+... ++++..++|+.+..++...+ .+..+|+|+|.- -. ..+++.+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv------~~-rGiDip~ 313 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDI------AA-RGLDIEE 313 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccH------Hh-cCCCccc
Confidence 458999999999988887777553 78889999988765444332 236789999942 11 4456666
Q ss_pred ccEEE
Q psy4275 150 IKFLV 154 (182)
Q Consensus 150 ~~~iI 154 (182)
+++||
T Consensus 314 v~~VI 318 (456)
T PRK10590 314 LPHVV 318 (456)
T ss_pred CCEEE
Confidence 66655
No 414
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=94.53 E-value=0.084 Score=38.28 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=24.6
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhcc-CCCCeeEEEEcC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCE-DPYGIFALVLTP 82 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~-~~~~~~~lil~p 82 (182)
+.+..|+++.|+||+|||......+...+.. ++...++.++-+
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~ 78 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDP 78 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-T
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcC
Confidence 3445699999999999999866555555442 233444444444
No 415
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.52 E-value=0.13 Score=47.04 Aligned_cols=56 Identities=20% Similarity=0.135 Sum_probs=42.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
.+++++.++.|||||.+..--++..+.......++++|+.|+.-+.++.+.+....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 57899999999999998766666655543334589999999999988876655443
No 416
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.51 E-value=0.098 Score=44.08 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=23.7
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEE
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALV 79 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~li 79 (182)
..|+.+-++||+|+|||+.. -++.+++... .+++++
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~--~LL~r~~~~~-~G~I~i 388 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLI--KLLLRLYDPT-SGEILI 388 (567)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhccCCCC-CCeEEE
Confidence 34777789999999998765 4455555432 334555
No 417
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.29 Score=38.79 Aligned_cols=25 Identities=12% Similarity=-0.114 Sum_probs=18.6
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
..+++||.|+|||..+...+-..+.
T Consensus 47 a~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 47 ALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcC
Confidence 4889999999999986555444433
No 418
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.50 E-value=0.14 Score=40.35 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=30.4
Q ss_pred HHHHHCCCCCChHHHHhhhhhhh-CCCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 19 RQCQTIGVKTPTEIQKAIIPHVL-NDEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 19 ~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+.+.+.|. +.+.+.+.+..+. .+.+++++|+||+|||... ..++..+
T Consensus 155 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i 202 (340)
T TIGR03819 155 DELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALV 202 (340)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccC
Confidence 33444443 4556666665544 4779999999999999874 3344433
No 419
>KOG2228|consensus
Probab=94.46 E-value=0.53 Score=37.06 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=18.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
++++++.||-|+|||+-.-..+..
T Consensus 49 snsviiigprgsgkT~li~~~Ls~ 72 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSD 72 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhh
Confidence 578999999999999864444444
No 420
>PRK08006 replicative DNA helicase; Provisional
Probab=94.46 E-value=0.86 Score=37.67 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=61.8
Q ss_pred hhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-EcCCchh
Q psy4275 37 IPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII-TGGMDMV 115 (182)
Q Consensus 37 ~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~ 115 (182)
..-+..|.-+++.|.+|.|||..++-.+.+..... +..++++... .-.+|+.+.+-... .++....+ .|..+..
T Consensus 218 ~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~--g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 218 TAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQ--DKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDE 292 (471)
T ss_pred hcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHH
Confidence 33445566778888999999998776665554332 3456666432 22344433322211 12222111 2333322
Q ss_pred hhhH------HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 116 DQGK------ELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 116 ~~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++.+ .+.+...+.|. |+..+....++... ....+++||+|-.|.|..
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~ 350 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFR-EHGGLSLIMIDYLQLMRV 350 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHHccC
Confidence 2211 12234456653 45555444433111 122578999999998863
No 421
>PRK06904 replicative DNA helicase; Validated
Probab=94.45 E-value=0.66 Score=38.36 Aligned_cols=121 Identities=19% Similarity=0.127 Sum_probs=61.1
Q ss_pred hhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-Ec-CCchh
Q psy4275 38 PHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII-TG-GMDMV 115 (182)
Q Consensus 38 ~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~ 115 (182)
.-+..|.-+++.|.+|.|||..++-.+....... +..++++... .-.+|+...+-... .++....+ .| ..+..
T Consensus 216 ~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~--g~~Vl~fSlE-Ms~~ql~~Rlla~~--s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 216 AGLQPSDLIIVAARPSMGKTTFAMNLCENAAMAS--EKPVLVFSLE-MPAEQIMMRMLASL--SRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred hccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhc--CCeEEEEecc-CCHHHHHHHHHHhh--CCCCHHHhccCCCCCHH
Confidence 3445566778888999999998765555444332 3456666533 33344433322211 12222111 23 22222
Q ss_pred hhh------HHhcCCCcEEE-----EChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 116 DQG------KELAKKPHIVI-----ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 116 ~~~------~~~~~~~~Ilv-----~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
++. ..+.+...+.| .|+..+....++... ....+++||||-.|.|...
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~-~~~~~~lvvIDYLqli~~~ 349 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYR-ENGGLSLIMVDYLQLMRAP 349 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEecHHhcCCC
Confidence 221 12222344666 355555544433111 1124789999999988643
No 422
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.45 E-value=0.56 Score=37.40 Aligned_cols=49 Identities=14% Similarity=0.067 Sum_probs=27.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.+.+.+.|+.|+|||...-+. .+.+.. ..+.+ ++...-..++++.+.++
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f-~~~lp~-~~k~R----~HFh~Fm~~vh~~l~~~ 110 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLF-YDSLPI-KRKRR----VHFHEFMLDVHSRLHQL 110 (362)
T ss_pred CceEEEECCCCCchhHHHHHH-HHhCCc-ccccc----ccccHHHHHHHHHHHHH
Confidence 568899999999999874333 222222 11212 24445555555555554
No 423
>PRK10263 DNA translocase FtsK; Provisional
Probab=94.43 E-value=0.14 Score=46.73 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=27.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc-CCCCeeEEEEcCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE-DPYGIFALVLTPT 83 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~ 83 (182)
..|.++.|.||+|||.+.-..++..+.. ++...+.++|-|.
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK 1051 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPK 1051 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCC
Confidence 4699999999999999865555554443 2334455555554
No 424
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.40 E-value=0.11 Score=40.61 Aligned_cols=47 Identities=17% Similarity=-0.017 Sum_probs=33.9
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
+..|.-..+.||+|+|||..++..+...... +..++++.....+..+
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPV 98 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHHH
Confidence 3446678899999999999977766665443 5578888776655443
No 425
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.40 E-value=0.072 Score=45.20 Aligned_cols=59 Identities=22% Similarity=0.134 Sum_probs=44.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG 110 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 110 (182)
..|+++.||||+|||..++++-+-.. +..++++-|.-++....+...++ .|.+|.++..
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~----~G~~V~vfdP 216 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREK----QGQKVFVWEP 216 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEeC
Confidence 35899999999999999888876643 23689999999998776665554 3666666553
No 426
>PRK08506 replicative DNA helicase; Provisional
Probab=94.39 E-value=0.51 Score=39.01 Aligned_cols=119 Identities=17% Similarity=0.082 Sum_probs=61.4
Q ss_pred hhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE-EEcCCchhh
Q psy4275 38 PHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI-ITGGMDMVD 116 (182)
Q Consensus 38 ~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 116 (182)
.-+..|.-+++.|.+|.|||..++-.+.+...+ +..++++... .-..|+...+-.. ..++.... ..|..+...
T Consensus 187 ~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlE-Ms~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e 260 (472)
T PRK08506 187 KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLE-MPAEQLMLRMLSA--KTSIPLQNLRTGDLDDDE 260 (472)
T ss_pred CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCc-CCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHH
Confidence 334456678888999999999877666665422 4456666533 3334443332221 11222211 123322222
Q ss_pred hh------HHhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 117 QG------KELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 117 ~~------~~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+. ..+ .+..+.|- |+..+...++.... ....+++||+|-.+.|...
T Consensus 261 ~~~~~~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~l~~-~~~~~~lvvIDyLql~~~~ 317 (472)
T PRK08506 261 WERLSDACDEL-SKKKLFVYDSGYVNIHQVRAQLRKLKS-QHPEIGLAVIDYLQLMSGS 317 (472)
T ss_pred HHHHHHHHHHH-HcCCeEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEcChhhccCC
Confidence 21 112 23345552 45555544443211 1235789999999988643
No 427
>PF14516 AAA_35: AAA-like domain
Probab=94.38 E-value=0.29 Score=38.44 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=36.8
Q ss_pred hHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 30 TEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 30 ~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
.|..++++..+.+ |..+.+.+|-..|||.. +..+++.+.+. +.+++++-
T Consensus 17 ~~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~~--~~~~v~id 66 (331)
T PF14516_consen 17 PPAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQQ--GYRCVYID 66 (331)
T ss_pred hHHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHHC--CCEEEEEE
Confidence 3588999999888 99999999999999988 44555555443 45565554
No 428
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.37 E-value=0.11 Score=39.92 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=16.8
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+.++++.||+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45899999999999988643
No 429
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.33 E-value=0.1 Score=40.54 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+..+.++++.|+||+|||+.. ..++..+
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~ 168 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEI 168 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccC
Confidence 445889999999999999874 3344433
No 430
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=94.32 E-value=0.084 Score=38.95 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=27.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
++|+.+.|.||+|||..... +++.+.+. .+..++++=|.-
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~~-~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLKK-KGAKVIIFDPHG 62 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHhc-CCCCEEEEcCCC
Confidence 57999999999999998544 44444421 144677776653
No 431
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.26 E-value=0.014 Score=42.71 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+.+++.||.|+|||.. +..+....
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 46889999999999986 44444444
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.26 E-value=0.085 Score=43.64 Aligned_cols=54 Identities=15% Similarity=0.004 Sum_probs=36.1
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
..|...++.|++|+|||+.++-.+.+.+.+. +.+++|++-. +-.+++.+..+.+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~--ge~~lyvs~e-E~~~~l~~~~~~~ 72 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF--DEPGVFVTFE-ESPQDIIKNARSF 72 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEe-cCHHHHHHHHHHc
Confidence 3477899999999999999888877765542 2357777753 3334444444443
No 433
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=94.26 E-value=0.21 Score=42.57 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH--HHHHHHHHHHHhhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE--LAYQIGDQFLVLGK 99 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~--l~~q~~~~~~~~~~ 99 (182)
..|.++.|+||+|||......+...+.. +..++++-|... +...++..++...+
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~---g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR---GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 5689999999999999977665555543 457888888764 44555555555544
No 434
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.24 E-value=0.46 Score=38.56 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=51.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..++||.++++.-++.+++.+.. .++++..++|+....++...+ .++.+|+|+|.- -. ..+++.+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv------~~-rGiDip~ 323 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAA----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDV------AA-RGLHIPA 323 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHh----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEech------hh-cCCCccc
Confidence 45899999999998887777754 378899999987765544332 347899999942 12 4567777
Q ss_pred ccEEEEe
Q psy4275 150 IKFLVLD 156 (182)
Q Consensus 150 ~~~iI~D 156 (182)
++++|.-
T Consensus 324 v~~VI~~ 330 (423)
T PRK04837 324 VTHVFNY 330 (423)
T ss_pred cCEEEEe
Confidence 7766643
No 435
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.043 Score=42.62 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=34.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCC----------CChHHHHhhhhh------hhCCCcEEEECCCCChHHHHHH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVK----------TPTEIQKAIIPH------VLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~----------~~~~~Q~~~~~~------~~~~~~~li~~~tg~GKT~~~~ 61 (182)
...+++|-+.++.+.|...-+. ..+.+-++.-.. -+.+.|+++.||||||||+.+.
T Consensus 44 ~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 44 KELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred hhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH
Confidence 3456678888888888765332 122222222111 1225689999999999998764
No 436
>PRK07004 replicative DNA helicase; Provisional
Probab=94.23 E-value=0.47 Score=39.08 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=60.6
Q ss_pred hhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH-HHhhccCCceEEEE-EcCCc
Q psy4275 36 IIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF-LVLGKVMNLRVSII-TGGMD 113 (182)
Q Consensus 36 ~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~-~~~~~~~~~~~~~~-~~~~~ 113 (182)
...-+..|.-+++.|.+|.|||..++-.+.+..... +..++++.. ..-.+|+...+ .... ++....+ .|..+
T Consensus 206 ~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--~~~v~~fSl-EM~~~ql~~R~la~~~---~v~~~~i~~g~l~ 279 (460)
T PRK07004 206 MTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEY--GLPVAVFSM-EMPGTQLAMRMLGSVG---RLDQHRMRTGRLT 279 (460)
T ss_pred cccCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHc--CCeEEEEeC-CCCHHHHHHHHHHhhc---CCCHHHHhcCCCC
Confidence 333344566788889999999998776665544332 334555542 22233332222 2211 2222111 23333
Q ss_pred hhhhhH-----HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 114 MVDQGK-----ELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 114 ~~~~~~-----~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
..++.. ...++..+.|. |+..+....++... ....+++||+|-.|.|...
T Consensus 280 ~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~-~~~~~~lviIDYLql~~~~ 339 (460)
T PRK07004 280 DEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLAR-QCGKLGLIIIDYLQLMSGS 339 (460)
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hCCCCCEEEEChhhhccCC
Confidence 222211 11224556662 44444444333111 1234789999999998743
No 437
>KOG1807|consensus
Probab=94.22 E-value=0.094 Score=45.16 Aligned_cols=67 Identities=18% Similarity=-0.030 Sum_probs=52.0
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCHHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~ 94 (182)
-+...|..++......+-.+++||+|+|||.+.+.++-..+.++. ..-.++++|-|...++|...-+
T Consensus 378 ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligi 447 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGI 447 (1025)
T ss_pred eecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHH
Confidence 466779999988888889999999999999997777666655541 2335899999999888865443
No 438
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.21 E-value=0.2 Score=33.05 Aligned_cols=21 Identities=19% Similarity=0.056 Sum_probs=16.1
Q ss_pred EEEECCCCChHHHHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~ 66 (182)
+++.||+|+|||..+-..+-.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 478999999999986544444
No 439
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.19 E-value=0.33 Score=41.47 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=18.3
Q ss_pred cEEEECCCCChHHHHHHHHHHHhh
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
..+++||.|+|||.++.+......
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999997665555443
No 440
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.17 E-value=0.23 Score=40.73 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=19.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
+..++.||.|+|||..+...+-....
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 34789999999999997666555443
No 441
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.14 E-value=0.19 Score=35.20 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=33.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIIT 109 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 109 (182)
..+.+.|++|+|||+. +.-+.+.+...+-+ -.=+++| ++..=.+..|+++.-+.
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~~g~k-vgGf~t~----------EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLREKGYK-VGGFITP----------EVREGGKRIGFKIVDLA 59 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHhcCce-eeeEEee----------eeecCCeEeeeEEEEcc
Confidence 3578999999999988 44555555554311 2234544 33455566677776655
No 442
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.13 E-value=0.11 Score=37.54 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=17.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
-++++||||+|||+.. ..++..+.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhh
Confidence 4688999999999985 34444443
No 443
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.10 E-value=0.13 Score=40.25 Aligned_cols=46 Identities=15% Similarity=-0.063 Sum_probs=33.9
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
..|+-+.+.||+|+|||..++..+...... +..++|+.+...+-.+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~~ 98 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDPV 98 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHHH
Confidence 335678899999999999877766665433 5578899887766543
No 444
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.05 E-value=0.055 Score=41.32 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=19.5
Q ss_pred hhCCCcEEEECCCCChHHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++++++||+|+|||....-.
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~ 53 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNF 53 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHH
T ss_pred HHcCCcEEEECCCCCchhHHHHhh
Confidence 445889999999999999985443
No 445
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=94.00 E-value=1 Score=31.72 Aligned_cols=84 Identities=12% Similarity=0.024 Sum_probs=50.8
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCC
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (182)
+++.|+..||||..+.-.+... +.+.+|++.....-.++.+.+++..+.-+....++...............+.
T Consensus 1 ilv~GG~rSGKS~~Ae~la~~~------~~~~~YiAT~~~~D~em~~RI~~H~~~R~~~w~tiE~~~~l~~~~~~~~~~~ 74 (167)
T PF02283_consen 1 ILVTGGARSGKSSFAERLALSF------GGPVTYIATARPFDEEMRERIARHRQRRPKGWITIEEPRDLAEALEELSPGD 74 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHTS--------SCEEEEESSHHHHHHHHHHHHHHHHHSSTCEEEEE-SS-GGGTS-TTS-T-
T ss_pred CEEeCCCCcchHHHHHHHHHhc------CCCcEEEeCCCCCCHHHHHHHHHHHHhCCCCcEEEecchhHHHHHHHhccCC
Confidence 4789999999998877666222 3578999999999777777777655444666666655444333332222223
Q ss_pred cEEEEChHHH
Q psy4275 126 HIVIATPGRL 135 (182)
Q Consensus 126 ~Ilv~T~~~l 135 (182)
-|+|-.-..+
T Consensus 75 ~vLlDclt~w 84 (167)
T PF02283_consen 75 VVLLDCLTLW 84 (167)
T ss_dssp EEEEE-HHHH
T ss_pred eEEEeCHHHH
Confidence 4666554444
No 446
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.99 E-value=0.069 Score=44.56 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=20.5
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
..|+...++||+|+|||+.+ -++..++.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl--~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLL--MLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHH--HHHhcCCC
Confidence 34888999999999999764 44444444
No 447
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=0.66 Score=36.41 Aligned_cols=84 Identities=13% Similarity=0.039 Sum_probs=49.6
Q ss_pred ChHHHHhhhhhhhC----C---CcEEEECCCCChHHHHHHHHHHHhhccCC------------------CCeeEEEEcCC
Q psy4275 29 PTEIQKAIIPHVLN----D---EDCIGCAKTGSGKTLAFALPILQKWCEDP------------------YGIFALVLTPT 83 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~----~---~~~li~~~tg~GKT~~~~~~~~~~~~~~~------------------~~~~~lil~p~ 83 (182)
..||+...+..+.+ + +-.++.||.|.||+..+...+...+..++ ..+-+.++.|.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 46777777766654 3 35668999999999887766555544321 12335666673
Q ss_pred ---HHHHHHHHHHHHHh---hccCCceEEEEEcCC
Q psy4275 84 ---RELAYQIGDQFLVL---GKVMNLRVSIITGGM 112 (182)
Q Consensus 84 ---~~l~~q~~~~~~~~---~~~~~~~~~~~~~~~ 112 (182)
.--++|+.+..+.+ ....+.++..+.+..
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~ 117 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAE 117 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechh
Confidence 12355655443333 233457887776543
No 448
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.93 E-value=0.11 Score=40.47 Aligned_cols=42 Identities=26% Similarity=0.182 Sum_probs=29.9
Q ss_pred CChHHHHhhh-hhhhCCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 28 TPTEIQKAII-PHVLNDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 28 ~~~~~Q~~~~-~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.+.+.|..-+ -.+..+++.+++|+||+|||.. +.+++..+..
T Consensus 127 t~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~ 169 (312)
T COG0630 127 TISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP 169 (312)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc
Confidence 4566665544 4456689999999999999987 5555555443
No 449
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.90 E-value=0.59 Score=36.55 Aligned_cols=37 Identities=16% Similarity=0.040 Sum_probs=23.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
++-+.+.||+|+|||+.+.-.+... ... +.+++++.-
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~~--g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY-KAQ--GKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hhc--CCeEEEEec
Confidence 3457788999999998865444333 222 456777653
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.89 E-value=0.11 Score=42.90 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=36.2
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.|.-+++.||+|+|||+.++..+...+.+ +.+++|+.-.. -.+|+....+.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eE-s~~~i~~~~~~l 313 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEE-SRAQLLRNAYSW 313 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeC-CHHHHHHHHHHc
Confidence 36688999999999999877776666544 45788887433 345555555544
No 451
>PRK13695 putative NTPase; Provisional
Probab=93.88 E-value=1.2 Score=31.37 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=14.9
Q ss_pred cEEEECCCCChHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~ 62 (182)
++.+.|++|+|||+.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999998654
No 452
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.87 E-value=0.088 Score=43.64 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=18.5
Q ss_pred CcEEEECCCCChHHHHHHHHHHHh
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+-.+++||-|+|||.++-+.+-..
T Consensus 39 hAYlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 39 HAYLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred hhhhhcCCCCcCchhHHHHHHHHh
Confidence 457889999999999875555444
No 453
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=0.77 Score=35.93 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=51.3
Q ss_pred CChHHHHhhhhhhhC----C---CcEEEECCCCChHHHHHHHHHHHhhccCC-----------------CCeeEEEEcCC
Q psy4275 28 TPTEIQKAIIPHVLN----D---EDCIGCAKTGSGKTLAFALPILQKWCEDP-----------------YGIFALVLTPT 83 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~---~~~li~~~tg~GKT~~~~~~~~~~~~~~~-----------------~~~~~lil~p~ 83 (182)
+..|||...+..+.+ + +-.+++||.|.||+..+...+...+..++ ..+-+.++.|.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 467888888877654 3 35889999999999887655554443221 12345667774
Q ss_pred H----HHHHHHHHHHHHh---hccCCceEEEEEcCCc
Q psy4275 84 R----ELAYQIGDQFLVL---GKVMNLRVSIITGGMD 113 (182)
Q Consensus 84 ~----~l~~q~~~~~~~~---~~~~~~~~~~~~~~~~ 113 (182)
. --++|+.+..+.. ....+.+|.++.+...
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~ 119 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADA 119 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhh
Confidence 2 1345554433222 1223578888776443
No 454
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.87 E-value=0.3 Score=38.35 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=19.6
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
-.++.||.|+||+..+...+-..+..
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 35899999999999876665555444
No 455
>CHL00176 ftsH cell division protein; Validated
Probab=93.85 E-value=0.49 Score=40.61 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=16.8
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
+++++.||+|+|||..+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 57999999999999886444
No 456
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.85 E-value=0.18 Score=37.44 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=35.5
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
..|.-+++.|++|+|||..+...+...+.+ +.+++|+.-.... +++.+.++.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~~-~~~~~~~~~ 74 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENTS-KSYLKQMES 74 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCCH-HHHHHHHHH
Confidence 336678889999999999877776665543 5578888865444 344444444
No 457
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.74 E-value=0.075 Score=43.61 Aligned_cols=72 Identities=15% Similarity=-0.053 Sum_probs=55.2
Q ss_pred CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhh
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLG 98 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 98 (182)
++.++...|+++.-..-.|+. .+.|-.|+|||.....-+.+.-..+++. ++++.+-++.|+.++...+.+++
T Consensus 159 kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~-~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 159 KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDS-RIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHHhcCCCCc-eEEEEeehHHHHHHHHHHHHHHH
Confidence 345677778776655555655 6788899999999777777766666655 89999999999999888777764
No 458
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=93.73 E-value=0.95 Score=35.15 Aligned_cols=101 Identities=17% Similarity=0.091 Sum_probs=57.0
Q ss_pred EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHH-HHHHhhccCCceEEEEEcCCchhhhhHHhcCCC
Q psy4275 47 IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGD-QFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (182)
++.|+-|.|||.+.--.++..+... |.+.+++=-...=++.+.+ .+.++.+.++-.-..+.|..- ..++-
T Consensus 21 ~viG~RgiGKtya~k~~~i~df~~~--G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~F~vk~~k~-------~idgk 91 (333)
T PF05894_consen 21 FVIGARGIGKTYALKKKLIKDFIEY--GEQFIYLRRYKTELDKMKNKFFNDVQQEFPNNEFEVKGNKI-------YIDGK 91 (333)
T ss_pred EEEecccccchhHHHHHHHHHHHhc--CCEEEEEEecchHHHHHhhHHHHHHHHhCCCCcEEEEccEE-------EECCe
Confidence 4459999999999888888888776 5577887655554444443 444443333221122233221 11122
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 126 ~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
.+...+|-.-.... +....+++..||+||.-
T Consensus 92 ~~g~~~~Ls~~q~~---Ks~~Yp~V~~IvfDEfi 122 (333)
T PF05894_consen 92 LIGYFIPLSGWQKL---KSSSYPNVYTIVFDEFI 122 (333)
T ss_pred EEEEEEecchhhhc---ccCCCCcEEEEEEEEEE
Confidence 22222222222222 44467889999999996
No 459
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.13 Score=40.56 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=35.9
Q ss_pred CccCCccCCC-CCHHHHHHHHHC--CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHH
Q psy4275 3 DPIKSFTDLK-LNPWLIRQCQTI--GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 3 ~~~~~~~~~~-l~~~i~~~l~~~--~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~ 60 (182)
+|--+|++.| |++++.+.-.-. .+.+|--+++-.+ ..-+.+++.||+|+|||+.+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHHH
Confidence 3445677774 777777666443 3344444444444 22467999999999999885
No 460
>PRK09354 recA recombinase A; Provisional
Probab=93.70 E-value=0.17 Score=40.03 Aligned_cols=43 Identities=19% Similarity=0.003 Sum_probs=33.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
|.-+.+.||+|+|||..++..+...... +..++|+....++-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHH
Confidence 5578899999999999987777665543 557888888776654
No 461
>PRK08840 replicative DNA helicase; Provisional
Probab=93.68 E-value=1.4 Score=36.37 Aligned_cols=124 Identities=16% Similarity=0.128 Sum_probs=61.4
Q ss_pred HHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH-HHHhhccCCceEEEE-Ec
Q psy4275 33 QKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ-FLVLGKVMNLRVSII-TG 110 (182)
Q Consensus 33 Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~-~~~~~~~~~~~~~~~-~~ 110 (182)
-.....-+..|.-+++.|.+|.|||..++-.+....... +..++++... .-.+|+... +... .++....+ .|
T Consensus 207 LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~--~~~v~~fSlE-Ms~~ql~~Rlla~~---s~v~~~~i~~~ 280 (464)
T PRK08840 207 LNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQ--DKPVLIFSLE-MPAEQLMMRMLASL---SRVDQTKIRTG 280 (464)
T ss_pred HHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhC--CCeEEEEecc-CCHHHHHHHHHHhh---CCCCHHHHhcC
Confidence 334444455577788889999999998765555544332 3456666433 223444322 2222 12222111 22
Q ss_pred CCchhhhhH------HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 111 GMDMVDQGK------ELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 111 ~~~~~~~~~------~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
..+..++.. .+.+...+.|. |...+....++... ....+++||+|-.|.|..
T Consensus 281 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~-~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 281 QLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAR-EHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccHHhcCC
Confidence 222222221 12123445553 34444433333211 112478999999998863
No 462
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.63 E-value=0.13 Score=37.88 Aligned_cols=40 Identities=15% Similarity=0.005 Sum_probs=29.5
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
..|.-..+.|++|+|||..++..+.+.+.. +.+++|+.-.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 336678999999999999877766665543 4577887655
No 463
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.61 E-value=0.09 Score=42.55 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.1
Q ss_pred hhhhCCCcEEEECCCCChHHHHH
Q psy4275 38 PHVLNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~~li~~~tg~GKT~~~ 60 (182)
+.-...+|+++.|+||+|||...
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHHH
Confidence 33344679999999999999874
No 464
>PTZ00110 helicase; Provisional
Probab=93.59 E-value=0.8 Score=38.57 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=50.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.|+++.-++.+++.+.. .++.+..++|+....++...+ .+..+|+|+|.- .. ..+++.+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv------~~-rGIDi~~ 445 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDV------AS-RGLDVKD 445 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcch------hh-cCCCccc
Confidence 56899999999999888777754 367888999988765544332 236789999942 12 4456777
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 776664
No 465
>PRK05595 replicative DNA helicase; Provisional
Probab=93.56 E-value=0.43 Score=39.06 Aligned_cols=124 Identities=14% Similarity=0.054 Sum_probs=60.2
Q ss_pred HhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE-EcCC
Q psy4275 34 KAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII-TGGM 112 (182)
Q Consensus 34 ~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~ 112 (182)
.+...-+..|.-+++.|.||.|||..++-.+.+...++ +..++++...- -.+|+...+-... .++....+ .|..
T Consensus 192 d~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~--g~~vl~fSlEm-s~~~l~~R~~a~~--~~v~~~~~~~~~l 266 (444)
T PRK05595 192 DAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE--GKSVAIFSLEM-SKEQLAYKLLCSE--ANVDMLRLRTGNL 266 (444)
T ss_pred HHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc--CCcEEEEecCC-CHHHHHHHHHHHh--cCCCHHHHhcCCC
Confidence 33333344566778889999999998776665543332 44677765431 2233332222111 12222111 2222
Q ss_pred chhhhhHH-----hcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 113 DMVDQGKE-----LAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 113 ~~~~~~~~-----~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
...++... ...+..+.|- |++.+...+++.+ .-..+++||+|-.|.|...
T Consensus 267 ~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~--~~~~~~~vvIDylql~~~~ 326 (444)
T PRK05595 267 EDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLK--IEHGIDMILIDYLQLMSGG 326 (444)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEeHHHhccCC
Confidence 22211110 0112344442 3344444343321 1234789999999998743
No 466
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.56 E-value=0.38 Score=37.57 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=69.4
Q ss_pred HHhhhhhh-hCCCcEEEECCCCChHHHHHHHHHHHhhcc-------CCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 33 QKAIIPHV-LNDEDCIGCAKTGSGKTLAFALPILQKWCE-------DPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 33 Q~~~~~~~-~~~~~~li~~~tg~GKT~~~~~~~~~~~~~-------~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
|-+.++.+ ..+...++.|+.|.|||+..+...+..... -++.+.++||.-...- +.+...++.+....++.
T Consensus 78 ~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r-e~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 78 SPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR-EDILERLEPVRARMGLS 156 (402)
T ss_pred ChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccCh-HHHHHHHHHHHHHcCCC
Confidence 44445443 346678888999999999876555543221 1234578888643222 33344555555544432
Q ss_pred E-----EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEe------ccccccccCChhHHHHH
Q psy4275 105 V-----SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLD------EADRLSLMTSLKFFFFF 173 (182)
Q Consensus 105 ~-----~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~D------E~h~~~~~~~~~~~~~~ 173 (182)
- .-+++-.. ....--+..| ++.+.+... ....+-+++|+| |-....+..-..+...+
T Consensus 157 Padvrn~dltd~~G---------aa~~~d~l~p-kl~rRfek~--~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~ 224 (402)
T COG3598 157 PADVRNMDLTDVSG---------AADESDVLSP-KLYRRFEKI--LEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKT 224 (402)
T ss_pred hHhhhheecccccc---------CCCccccccH-HHHHHHHHH--HHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHH
Confidence 1 11110000 1111122344 444433221 112335689999 44555556666777777
Q ss_pred HHHhhcC
Q psy4275 174 FFLKYYI 180 (182)
Q Consensus 174 ~~~~~~~ 180 (182)
.+++..+
T Consensus 225 rkla~~l 231 (402)
T COG3598 225 RKLARNL 231 (402)
T ss_pred HHHHHhc
Confidence 7777655
No 467
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.54 E-value=0.35 Score=34.10 Aligned_cols=40 Identities=23% Similarity=0.236 Sum_probs=27.4
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
...+++++|++|+||+..+ -.++....+..++.+.+=|..
T Consensus 21 ~~~pVlI~GE~GtGK~~lA--~~IH~~s~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLA--RAIHNNSPRKNGPFISVNCAA 60 (168)
T ss_dssp STS-EEEECSTTSSHHHHH--HHHHHCSTTTTS-EEEEETTT
T ss_pred CCCCEEEEcCCCCcHHHHH--HHHHHhhhcccCCeEEEehhh
Confidence 3578999999999999886 455555444456667666654
No 468
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.54 E-value=0.31 Score=41.49 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=55.5
Q ss_pred CeeEEEEcCCHHH--------HHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhc
Q psy4275 74 GIFALVLTPTREL--------AYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDT 141 (182)
Q Consensus 74 ~~~~lil~p~~~l--------~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~ 141 (182)
|.++.+|||..+= +...++.++.+.. +.++..+||..+..+..+.+ .++.+|+|+|.- =+
T Consensus 473 GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~--~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV------IE 544 (677)
T COG1200 473 GRQAYVVCPLIEESEKLELQAAEELYEELKSFLP--ELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV------IE 544 (677)
T ss_pred CCEEEEEeccccccccchhhhHHHHHHHHHHHcc--cceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE------EE
Confidence 6789999997652 3444555554333 57899999998865554443 247899999921 12
Q ss_pred CCCCCCCCccEEEEecccccc
Q psy4275 142 CNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 142 ~~~~~~~~~~~iI~DE~h~~~ 162 (182)
..++..+-+++|+..|+++.
T Consensus 545 -VGVdVPnATvMVIe~AERFG 564 (677)
T COG1200 545 -VGVDVPNATVMVIENAERFG 564 (677)
T ss_pred -ecccCCCCeEEEEechhhhh
Confidence 45688888999999998764
No 469
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=93.51 E-value=0.61 Score=38.26 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=51.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..++||.|+++.-++.+++.+... ++.+..++|+.+..++...+ .+..+|+|+|.- -. ..+++++
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv------~~-rGiDi~~ 310 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDV------AA-RGLDIKA 310 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecc------cc-cccchhc
Confidence 457999999999999888877654 78899999988765444333 236789999932 12 4456777
Q ss_pred ccEEEEec
Q psy4275 150 IKFLVLDE 157 (182)
Q Consensus 150 ~~~iI~DE 157 (182)
++++|.-+
T Consensus 311 v~~VI~~d 318 (460)
T PRK11776 311 LEAVINYE 318 (460)
T ss_pred CCeEEEec
Confidence 77666543
No 470
>PRK09165 replicative DNA helicase; Provisional
Probab=93.50 E-value=1.6 Score=36.43 Aligned_cols=120 Identities=15% Similarity=0.054 Sum_probs=60.6
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccC------------CCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCED------------PYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~------------~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
+..|.-+++.|.+|.|||..++-.+.+...+. ..+..++|+.-. .-.+|+...+-.... ++....
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s--~v~~~~ 290 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQS--EISSSK 290 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHH
Confidence 34456688889999999998776655544321 124466666432 223444333322211 222211
Q ss_pred -EEcCCchhhhhH-----HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 108 -ITGGMDMVDQGK-----ELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 108 -~~~~~~~~~~~~-----~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
..|.....++.. .......+.|. |++.+...+++.+ .-..+++||||=.|.|...
T Consensus 291 i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~--~~~~~~lvvIDyLqli~~~ 356 (497)
T PRK09165 291 IRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLK--RQHGLDLLVVDYLQLIRGS 356 (497)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhccCC
Confidence 223332222211 11123445553 4555555554321 1234789999999988643
No 471
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.50 E-value=0.077 Score=30.87 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.4
Q ss_pred CCcEEEECCCCChHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~ 60 (182)
+...++.+++|+|||...
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999874
No 472
>KOG1806|consensus
Probab=93.47 E-value=0.15 Score=45.27 Aligned_cols=68 Identities=19% Similarity=0.151 Sum_probs=51.2
Q ss_pred ChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 29 PTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 29 ~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.+|-|.+++..-..-+...+.||+|+|||-.+. -++..++.+.-+.+++|++++....++..+.+.+.
T Consensus 739 ft~~qveai~sg~qpgltmvvgppgtgktd~av-qil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 739 FTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAV-QILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred cCHHHHHHHHhcCCCCceeeecCCCCCCcchhh-hhhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 467888888776666789999999999997754 33333444444679999999999888887776654
No 473
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.43 E-value=0.23 Score=45.26 Aligned_cols=53 Identities=25% Similarity=0.167 Sum_probs=41.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccC-C-CCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCED-P-YGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~-~-~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
...+|.+..|+|||.+.....+..+... . .-.++++|+=|++-+.++.+.+++
T Consensus 10 G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~ 64 (1087)
T TIGR00609 10 GTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRG 64 (1087)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHH
Confidence 4689999999999998777777666654 2 235899999999988888777665
No 474
>KOG0344|consensus
Probab=93.40 E-value=1.5 Score=36.83 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCc
Q psy4275 51 KTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPH 126 (182)
Q Consensus 51 ~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 126 (182)
-.++|++..-++++...+. .+-.+.++|.+.+.+-+.|++..+. ..-++++..++|..+..++...+. +...
T Consensus 365 lvF~gse~~K~lA~rq~v~-~g~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA-SGFKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred heeeecchhHHHHHHHHHh-ccCCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 3577787776666666544 4456789999999999998887776 334688999999877655554443 3567
Q ss_pred EEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 127 IVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 127 Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
++|||. .+. +.+++..+++||-++.-
T Consensus 441 vLicTd-----ll~--RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 441 VLICTD-----LLA--RGIDFKGVNLVINYDFP 466 (593)
T ss_pred EEEehh-----hhh--ccccccCcceEEecCCC
Confidence 999992 232 34788899999988753
No 475
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.29 E-value=0.15 Score=43.90 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=41.0
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIIT 109 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 109 (182)
.|+++.||||+|||..++++-+-.. ...++++-|--++......+.++ .|.+|.++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-----~gS~VV~DpKGE~~~~Ta~~R~~----~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-----KGSVIALDVKGELFELTSRARKA----SGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-----CCCEEEEeCCchHHHHHHHHHHh----CCCEEEEec
Confidence 4899999999999999887765542 23688888988887666555544 355665544
No 476
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.28 E-value=1.3 Score=35.47 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=24.0
Q ss_pred Hhhhhhhh---CCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 34 KAIIPHVL---NDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 34 ~~~~~~~~---~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
..++..+. +|+..++.||.|+|||+.... +...+.+
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 33444443 378999999999999988543 3343333
No 477
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.25 E-value=0.077 Score=35.84 Aligned_cols=19 Identities=21% Similarity=0.135 Sum_probs=15.3
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
++++.||+|+|||..+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~l 19 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLAREL 19 (139)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999885433
No 478
>PHA00149 DNA encapsidation protein
Probab=93.04 E-value=1.9 Score=33.19 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=56.0
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCC
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKP 125 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (182)
.++.|+-|.|||.+..-.++..+... |-+.+++=-...=.....+.+........-.-..+.|.. ...++-
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~k--geqfiYLRr~k~El~~k~~Ff~d~~~~~~~~~F~Vkg~k-------i~~~~k 90 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKK--GEQFIYLRRYKSELKKKSKFFADIAQEFPNTEFEVKGRK-------IYIKGK 90 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhc--CcEEEEEEecchhhhhhhhhhHHHHHhCCCCceEEEccE-------EEEcCe
Confidence 34459999999999888888887776 446677654433322233333333333222222333321 111222
Q ss_pred cEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 126 HIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 126 ~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
.|...-|-.-.+.+ +....+++..|++||.-.
T Consensus 91 ~igy~i~LS~~q~~---Ks~~Yp~V~~I~fDEfi~ 122 (331)
T PHA00149 91 LIGYAIPLSTWQAL---KSSAYPNVSTIFFDEFIR 122 (331)
T ss_pred EEEEEEehhhHHhh---cccCCCceEEEEeeeeee
Confidence 23333332222223 344678899999999976
No 479
>PRK08760 replicative DNA helicase; Provisional
Probab=93.02 E-value=0.98 Score=37.42 Aligned_cols=118 Identities=16% Similarity=0.138 Sum_probs=60.1
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEE-EEEcCCchhhh
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVS-IITGGMDMVDQ 117 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 117 (182)
-+..|.-+++.|.+|.|||..++-.+.....++ +..++++...- -.+|+...+..... ++... ...|.....++
T Consensus 225 G~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSlEM-s~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e~ 299 (476)
T PRK08760 225 GLQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSMEM-SASQLAMRLISSNG--RINAQRLRTGALEDEDW 299 (476)
T ss_pred CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEeccC-CHHHHHHHHHHhhC--CCcHHHHhcCCCCHHHH
Confidence 344466788889999999998776666654433 33566664322 22344333322211 12111 11222222221
Q ss_pred hH-----HhcCCCcEEEE-----ChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 118 GK-----ELAKKPHIVIA-----TPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 118 ~~-----~~~~~~~Ilv~-----T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
.. ....+..+.|. |++.+...++..+ ....+++||||-.+.|..
T Consensus 300 ~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~~ 353 (476)
T PRK08760 300 ARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMSV 353 (476)
T ss_pred HHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcCC
Confidence 11 11123445553 4555555444321 123478999999998853
No 480
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.00 E-value=0.61 Score=40.02 Aligned_cols=78 Identities=19% Similarity=0.229 Sum_probs=52.2
Q ss_pred CeeEEEEcCCHH--------HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhc
Q psy4275 74 GIFALVLTPTRE--------LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDT 141 (182)
Q Consensus 74 ~~~~lil~p~~~--------l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~ 141 (182)
+.++++++|..+ -+.+.++.++... .+.++..++|+.+..++...+ .++.+|+|+|.- -.
T Consensus 448 g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v------ie 519 (630)
T TIGR00643 448 GRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV------IE 519 (630)
T ss_pred CCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce------ee
Confidence 557899998752 2344455555433 367899999988765444332 247899999931 22
Q ss_pred CCCCCCCCccEEEEecccc
Q psy4275 142 CNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 142 ~~~~~~~~~~~iI~DE~h~ 160 (182)
..+++.+++++|+..++.
T Consensus 520 -~GvDiP~v~~VIi~~~~r 537 (630)
T TIGR00643 520 -VGVDVPNATVMVIEDAER 537 (630)
T ss_pred -cCcccCCCcEEEEeCCCc
Confidence 567888899988877764
No 481
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.99 E-value=0.19 Score=43.01 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=42.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG 110 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 110 (182)
..|.++.||||+|||...+++-+-. . +..++++-|..++........++ .|.+|.++..
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~---~--~gS~VV~DpKgEl~~~Ta~~R~~----~G~~V~vfdP 282 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK---W--GGPLVVLDPSTEVAPMVSEHRRD----AGREVIVLDP 282 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc---C--CCCEEEEeCcHHHHHHHHHHHHH----CCCeEEEEeC
Confidence 3589999999999999988886532 1 23688888998887665555433 3666766654
No 482
>KOG0328|consensus
Probab=92.98 E-value=0.33 Score=37.17 Aligned_cols=68 Identities=16% Similarity=0.251 Sum_probs=49.2
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc----CCCcEEEEChHHHHHHHhcC-CCCCCCC
Q psy4275 75 IFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA----KKPHIVIATPGRLADHLDTC-NTFSLNR 149 (182)
Q Consensus 75 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~Ilv~T~~~l~~~~~~~-~~~~~~~ 149 (182)
.+++|.|.++.-++ |+.+..+..+..|...+|+....++..... ...+|+++|.- | +.++...
T Consensus 267 tQavIFcnTk~kVd----wLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV--------waRGiDv~q 334 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVD----WLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV--------WARGIDVQQ 334 (400)
T ss_pred heEEEEecccchhh----HHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEech--------hhccCCcce
Confidence 47999999988765 555555666899999999998776665543 36789999832 2 4556777
Q ss_pred ccEEE
Q psy4275 150 IKFLV 154 (182)
Q Consensus 150 ~~~iI 154 (182)
++++|
T Consensus 335 Vslvi 339 (400)
T KOG0328|consen 335 VSLVI 339 (400)
T ss_pred eEEEE
Confidence 77666
No 483
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.93 E-value=0.63 Score=39.86 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=15.8
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
+-.++.||+|+|||..+-+.
T Consensus 111 ~illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 34889999999999886433
No 484
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=92.92 E-value=0.65 Score=39.85 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=50.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..++||.|+++.-+.++++.+... ++.+..++|+.+..++...+ .++.+|+|+|.- -. ..+++++
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv------~a-rGIDip~ 313 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIATDV------AA-RGLDVER 313 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcch------Hh-cCCCccc
Confidence 357999999999998888777653 78888999988765544332 247889999932 12 4466777
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
+++||.
T Consensus 314 V~~VI~ 319 (629)
T PRK11634 314 ISLVVN 319 (629)
T ss_pred CCEEEE
Confidence 777664
No 485
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.88 E-value=0.86 Score=37.59 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=50.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH----hcCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE----LAKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+..+||.++++.-++.+++.++.. ++++..++++.+..++... ..+..+|+|+|... . ..+++++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~------~-~GID~p~ 294 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAF------G-MGINKPD 294 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechh------h-ccCCccc
Confidence 456799999999999988877654 7889999998876544332 23578999999431 1 4456666
Q ss_pred ccEEEEe
Q psy4275 150 IKFLVLD 156 (182)
Q Consensus 150 ~~~iI~D 156 (182)
++++|.-
T Consensus 295 V~~VI~~ 301 (470)
T TIGR00614 295 VRFVIHY 301 (470)
T ss_pred ceEEEEe
Confidence 7766654
No 486
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=92.87 E-value=0.94 Score=37.37 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=46.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..++||.++++.-++.+++.+.. .++++..++|+....++.... .++.+|+|+|.-- . ..+++..
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l------~-~GIDi~~ 403 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVK----DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVA------G-RGIHIDG 403 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcccc------c-cCCcccC
Confidence 45899999999988887766654 367888889887765443322 2367889988321 1 3345555
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 404 v~~VI~ 409 (475)
T PRK01297 404 ISHVIN 409 (475)
T ss_pred CCEEEE
Confidence 555553
No 487
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.86 E-value=0.76 Score=36.93 Aligned_cols=22 Identities=27% Similarity=0.150 Sum_probs=18.0
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~ 65 (182)
.+.|+.||+|+|||..+.+..-
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHH
Confidence 4899999999999998755443
No 488
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.86 E-value=0.11 Score=34.13 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=15.6
Q ss_pred EEEECCCCChHHHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~ 65 (182)
+++.|++|+|||+.+-...-
T Consensus 2 I~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999998654433
No 489
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.85 E-value=0.63 Score=31.21 Aligned_cols=54 Identities=15% Similarity=0.093 Sum_probs=29.6
Q ss_pred CcEE--EECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc-----CCHHHHHHHHHHHHHh
Q psy4275 44 EDCI--GCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT-----PTRELAYQIGDQFLVL 97 (182)
Q Consensus 44 ~~~l--i~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~-----p~~~l~~q~~~~~~~~ 97 (182)
+..+ +.|+||+|||.++-+.+-......-.+..+.... |....+.+..++++.+
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 4444 5689999999997665555443322333443333 4444444444444443
No 490
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.76 E-value=1.9 Score=36.63 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=42.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH-hhccCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV-LGKVMN 102 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~ 102 (182)
.+-.+.--|--.|||+. +.+++..+..+-.+.++.|+++-+..++-+.+++.. ..+.++
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~ 261 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFP 261 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcC
Confidence 35667778999999987 556666666655588999999999888877655543 333343
No 491
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.67 Score=39.90 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=34.6
Q ss_pred HhcCCCcEEE-EChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHHHHH
Q psy4275 120 ELAKKPHIVI-ATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 120 ~~~~~~~Ilv-~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
.+.+.-+-.| +-|+++.+-+++.+..+ -++.+||+|.|.++....-...+.++
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka~~~N----Pv~LLDEIDKm~ss~rGDPaSALLEV 444 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKAGVKN----PVFLLDEIDKMGSSFRGDPASALLEV 444 (782)
T ss_pred HhccccccccccCChHHHHHHHHhCCcC----CeEEeechhhccCCCCCChHHHHHhh
Confidence 3334334455 56999999988754322 37999999999987654444444443
No 492
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.75 E-value=0.42 Score=37.80 Aligned_cols=43 Identities=9% Similarity=-0.171 Sum_probs=28.6
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc---CCCCeeEEEEcCCHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE---DPYGIFALVLTPTRE 85 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~---~~~~~~~lil~p~~~ 85 (182)
+.-..+.|++|+|||..++..+...... ...+.+++|+.-...
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 3457789999999998876555443322 122347999987664
No 493
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.70 E-value=0.77 Score=39.79 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=51.9
Q ss_pred CeeEEEEcCCHH--------HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhc
Q psy4275 74 GIFALVLTPTRE--------LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDT 141 (182)
Q Consensus 74 ~~~~lil~p~~~--------l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~ 141 (182)
+.++++++|+.+ -+...++.+..... ++++..++|+.+..++...+ .++.+|+|+|.- -.
T Consensus 471 g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v------ie 542 (681)
T PRK10917 471 GRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV------IE 542 (681)
T ss_pred CCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc------ee
Confidence 558999999542 23444555544432 37899999998765554433 236799999931 22
Q ss_pred CCCCCCCCccEEEEecccc
Q psy4275 142 CNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 142 ~~~~~~~~~~~iI~DE~h~ 160 (182)
..+++.+++++|+..++.
T Consensus 543 -~GiDip~v~~VIi~~~~r 560 (681)
T PRK10917 543 -VGVDVPNATVMVIENAER 560 (681)
T ss_pred -eCcccCCCcEEEEeCCCC
Confidence 556888899999887765
No 494
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.70 E-value=1.6 Score=31.37 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=24.5
Q ss_pred CccEEEEeccccccccCChhHHHHHHHHh
Q psy4275 149 RIKFLVLDEADRLSLMTSLKFFFFFFFLK 177 (182)
Q Consensus 149 ~~~~iI~DE~h~~~~~~~~~~~~~~~~~~ 177 (182)
..+++|+||+.-.+..++....+.+..+.
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 58899999999999999888877776654
No 495
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.68 E-value=1.2 Score=38.37 Aligned_cols=79 Identities=16% Similarity=0.283 Sum_probs=55.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.++++..++.+.+.+.+. ++++..++|+....++...+ .++.+|+|+|. .+ . ..+.+..
T Consensus 442 g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L-~-rGfDiP~ 510 (655)
T TIGR00631 442 NERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LL-R-EGLDLPE 510 (655)
T ss_pred CCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hh-c-CCeeeCC
Confidence 668999999999988887777654 67888888876543332222 24678998882 11 2 5678889
Q ss_pred ccEEEEeccccccc
Q psy4275 150 IKFLVLDEADRLSL 163 (182)
Q Consensus 150 ~~~iI~DE~h~~~~ 163 (182)
++++|+-|++...-
T Consensus 511 v~lVvi~DadifG~ 524 (655)
T TIGR00631 511 VSLVAILDADKEGF 524 (655)
T ss_pred CcEEEEeCcccccC
Confidence 99988887766543
No 496
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=92.67 E-value=0.2 Score=42.32 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.9
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
..+|+++.|+||+|||.. +..++..+.+
T Consensus 175 e~~h~li~G~tGsGKs~~-i~~ll~~~~~ 202 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVA-IRKLLRWIRQ 202 (566)
T ss_pred cccceEEEcCCCCCHHHH-HHHHHHHHHh
Confidence 357999999999999975 4555555443
No 497
>KOG0744|consensus
Probab=92.65 E-value=0.5 Score=37.02 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCCHHH-----------HHHHHHHHHHhhccCCceEEEE
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPTREL-----------AYQIGDQFLVLGKVMNLRVSII 108 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l-----------~~q~~~~~~~~~~~~~~~~~~~ 108 (182)
++-+++.||+|+|||... -++...+.-+ ....-.++=..+.+| +.++.+.++++.+.-+.-|+++
T Consensus 177 NRliLlhGPPGTGKTSLC-KaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLC-KALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHHH-HHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 567888999999999653 2333333211 112234454555554 3444455555555555555555
Q ss_pred Ec
Q psy4275 109 TG 110 (182)
Q Consensus 109 ~~ 110 (182)
.+
T Consensus 256 ID 257 (423)
T KOG0744|consen 256 ID 257 (423)
T ss_pred eH
Confidence 43
No 498
>PRK05636 replicative DNA helicase; Provisional
Probab=92.65 E-value=0.62 Score=38.84 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=25.5
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
+..|.-+++.|.+|.|||..++-.+.....++ +..++++
T Consensus 262 l~~G~Liiiaarpg~GKT~~al~~a~~~a~~~--g~~v~~f 300 (505)
T PRK05636 262 LRGGQMIIVAARPGVGKSTLALDFMRSASIKH--NKASVIF 300 (505)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEE
Confidence 34456678889999999998775555444332 3355555
No 499
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.64 E-value=0.24 Score=37.06 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=22.0
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+.++.|++|||||..... ++..+... -..+++++|
T Consensus 15 r~viIG~sGSGKT~li~~-lL~~~~~~--f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKS-LLYYLRHK--FDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHH-HHHhhccc--CCEEEEEec
Confidence 788999999999987443 33333332 124455555
No 500
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.39 E-value=0.095 Score=34.51 Aligned_cols=19 Identities=26% Similarity=-0.017 Sum_probs=14.9
Q ss_pred EEEECCCCChHHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~ 64 (182)
+++.|++|+|||+++-...
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 4689999999999865433
Done!