Query psy4275
Match_columns 182
No_of_seqs 103 out of 1146
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 21:25:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 1.4E-34 4.8E-39 214.9 18.0 172 1-173 24-200 (242)
2 3ber_A Probable ATP-dependent 100.0 6.2E-34 2.1E-38 212.4 18.4 170 4-173 41-210 (249)
3 1vec_A ATP-dependent RNA helic 100.0 2.4E-33 8.1E-38 203.2 20.7 167 6-173 3-170 (206)
4 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-33 4.3E-38 206.7 17.3 169 4-173 2-174 (219)
5 1qde_A EIF4A, translation init 100.0 3.7E-33 1.2E-37 204.7 19.1 170 2-173 10-179 (224)
6 3bor_A Human initiation factor 100.0 2.5E-33 8.4E-38 207.6 18.2 171 2-173 26-197 (237)
7 2oxc_A Probable ATP-dependent 100.0 6.7E-33 2.3E-37 204.4 19.5 168 2-171 20-189 (230)
8 3iuy_A Probable ATP-dependent 100.0 2.9E-33 1E-37 205.9 17.4 171 1-173 14-191 (228)
9 2db3_A ATP-dependent RNA helic 100.0 8.8E-33 3E-37 221.0 20.3 173 2-175 52-229 (434)
10 1wrb_A DJVLGB; RNA helicase, D 100.0 3.7E-33 1.3E-37 208.4 15.8 172 3-175 20-200 (253)
11 2pl3_A Probable ATP-dependent 100.0 1.7E-32 5.9E-37 202.8 18.7 169 2-171 21-193 (236)
12 1t6n_A Probable ATP-dependent 100.0 5.6E-32 1.9E-36 198.0 20.7 160 4-164 12-173 (220)
13 3fmo_B ATP-dependent RNA helic 100.0 2.7E-32 9.4E-37 208.5 19.1 173 4-181 90-265 (300)
14 2gxq_A Heat resistant RNA depe 100.0 7.3E-32 2.5E-36 195.4 19.1 164 7-173 2-168 (207)
15 3dkp_A Probable ATP-dependent 100.0 1.6E-32 5.4E-37 204.0 15.6 178 1-178 20-204 (245)
16 3ly5_A ATP-dependent RNA helic 100.0 3.2E-32 1.1E-36 204.5 17.4 167 7-173 53-225 (262)
17 2i4i_A ATP-dependent RNA helic 100.0 1E-31 3.6E-36 212.9 19.1 173 1-174 10-200 (417)
18 2j0s_A ATP-dependent RNA helic 100.0 8E-31 2.7E-35 207.6 20.0 167 3-170 34-200 (410)
19 1s2m_A Putative ATP-dependent 100.0 4.9E-30 1.7E-34 202.4 18.8 164 4-168 19-182 (400)
20 1fuu_A Yeast initiation factor 100.0 6.1E-30 2.1E-34 201.2 18.0 170 2-173 17-186 (394)
21 3eiq_A Eukaryotic initiation f 100.0 1.7E-29 5.7E-34 200.0 19.3 169 2-171 36-205 (414)
22 1xti_A Probable ATP-dependent 100.0 3.2E-29 1.1E-33 197.0 19.5 158 6-164 8-167 (391)
23 3pey_A ATP-dependent RNA helic 100.0 4.9E-29 1.7E-33 195.8 20.2 157 3-164 2-160 (395)
24 3fht_A ATP-dependent RNA helic 100.0 8.8E-29 3E-33 195.6 19.0 166 3-171 22-191 (412)
25 1hv8_A Putative ATP-dependent 100.0 2.7E-28 9.2E-33 189.9 19.5 167 3-172 3-170 (367)
26 3fmp_B ATP-dependent RNA helic 100.0 3.8E-28 1.3E-32 196.2 18.7 159 4-165 90-251 (479)
27 2z0m_A 337AA long hypothetical 100.0 1.6E-27 5.4E-32 183.7 18.9 153 13-173 1-153 (337)
28 3sqw_A ATP-dependent RNA helic 100.0 7.5E-28 2.6E-32 198.6 14.5 171 6-176 17-202 (579)
29 3i5x_A ATP-dependent RNA helic 99.9 3.6E-27 1.2E-31 193.8 14.6 164 13-176 79-253 (563)
30 2zj8_A DNA helicase, putative 99.9 1.7E-26 5.9E-31 194.8 15.2 162 6-174 1-163 (720)
31 2va8_A SSO2462, SKI2-type heli 99.9 5.3E-26 1.8E-30 191.6 17.6 162 5-173 7-169 (715)
32 2p6r_A Afuhel308 helicase; pro 99.9 1.9E-26 6.3E-31 194.1 10.0 159 7-173 2-162 (702)
33 3fho_A ATP-dependent RNA helic 99.9 4.1E-26 1.4E-30 185.6 11.2 155 5-164 118-274 (508)
34 2ykg_A Probable ATP-dependent 99.9 2.8E-25 9.4E-30 186.6 16.4 149 18-166 3-153 (696)
35 3oiy_A Reverse gyrase helicase 99.9 4.1E-26 1.4E-30 181.1 10.4 141 16-164 9-154 (414)
36 4a2p_A RIG-I, retinoic acid in 99.9 3.2E-25 1.1E-29 181.4 15.8 142 26-167 5-148 (556)
37 3tbk_A RIG-I helicase domain; 99.9 3.8E-25 1.3E-29 180.6 14.8 140 27-166 3-144 (555)
38 1oyw_A RECQ helicase, ATP-depe 99.9 1.5E-25 5.3E-30 182.8 12.1 166 5-181 1-173 (523)
39 2v1x_A ATP-dependent DNA helic 99.9 5.9E-25 2E-29 181.4 15.2 165 5-181 18-199 (591)
40 3b6e_A Interferon-induced heli 99.9 4.7E-25 1.6E-29 160.2 12.0 145 24-169 29-182 (216)
41 4a2q_A RIG-I, retinoic acid in 99.9 1.7E-24 5.9E-29 184.3 16.2 144 23-166 243-388 (797)
42 4f92_B U5 small nuclear ribonu 99.9 3.2E-24 1.1E-28 193.1 14.9 162 13-178 911-1075(1724)
43 4a2w_A RIG-I, retinoic acid in 99.9 6.3E-24 2.2E-28 183.3 15.3 144 23-166 243-388 (936)
44 3l9o_A ATP-dependent RNA helic 99.9 5.1E-24 1.7E-28 185.9 10.5 152 6-172 162-313 (1108)
45 4f92_B U5 small nuclear ribonu 99.9 2.5E-23 8.6E-28 187.2 14.5 150 25-177 76-235 (1724)
46 4ddu_A Reverse gyrase; topoiso 99.9 1.5E-22 5.2E-27 176.6 15.3 133 23-163 74-210 (1104)
47 1wp9_A ATP-dependent RNA helic 99.9 7.8E-22 2.7E-26 157.9 15.9 134 28-166 9-142 (494)
48 1gku_B Reverse gyrase, TOP-RG; 99.9 2.9E-22 9.9E-27 174.5 13.9 135 19-164 48-190 (1054)
49 1tf5_A Preprotein translocase 99.9 6.5E-22 2.2E-26 165.9 15.4 134 23-164 79-219 (844)
50 4gl2_A Interferon-induced heli 99.9 7.5E-23 2.6E-27 171.9 9.5 139 27-166 6-153 (699)
51 1gm5_A RECG; helicase, replica 99.9 1E-21 3.5E-26 166.0 15.1 139 15-163 356-504 (780)
52 2xgj_A ATP-dependent RNA helic 99.9 1.1E-21 3.7E-26 170.0 15.3 135 23-173 82-216 (1010)
53 1rif_A DAR protein, DNA helica 99.9 3.2E-22 1.1E-26 151.4 8.7 128 28-164 113-240 (282)
54 2fsf_A Preprotein translocase 99.9 4.3E-21 1.5E-25 160.8 12.5 133 24-164 71-209 (853)
55 4a4z_A Antiviral helicase SKI2 99.9 3.5E-21 1.2E-25 166.7 12.1 132 28-172 39-170 (997)
56 2oca_A DAR protein, ATP-depend 99.9 6.2E-21 2.1E-25 155.0 12.7 128 27-163 112-239 (510)
57 1nkt_A Preprotein translocase 99.8 1.2E-20 4.2E-25 158.5 14.1 134 23-164 107-246 (922)
58 2fwr_A DNA repair protein RAD2 99.8 2.8E-20 9.7E-25 149.8 11.9 118 28-168 93-211 (472)
59 2fz4_A DNA repair protein RAD2 99.8 5.7E-20 2E-24 135.8 11.6 118 28-168 93-211 (237)
60 2eyq_A TRCF, transcription-rep 99.8 2.6E-19 8.9E-24 157.1 17.5 144 10-163 585-739 (1151)
61 2ipc_A Preprotein translocase 99.8 1.1E-19 3.9E-24 152.6 14.3 134 24-165 76-218 (997)
62 3llm_A ATP-dependent RNA helic 99.8 1.4E-19 5E-24 133.4 13.3 127 26-161 59-188 (235)
63 3crv_A XPD/RAD3 related DNA he 99.8 4.8E-18 1.6E-22 139.4 11.5 130 28-163 3-187 (551)
64 3h1t_A Type I site-specific re 99.7 2.4E-18 8.3E-23 142.2 6.7 125 28-165 178-318 (590)
65 3o8b_A HCV NS3 protease/helica 99.7 3.2E-18 1.1E-22 141.8 7.2 115 28-162 217-331 (666)
66 2w00_A HSDR, R.ECOR124I; ATP-b 99.7 2E-17 6.7E-22 143.4 10.9 129 28-163 271-415 (1038)
67 2xau_A PRE-mRNA-splicing facto 99.7 1E-16 3.5E-21 135.9 14.0 149 3-160 69-219 (773)
68 2jlq_A Serine protease subunit 99.7 9.7E-18 3.3E-22 134.6 6.8 121 25-161 1-122 (451)
69 1z63_A Helicase of the SNF2/RA 99.7 5.7E-17 1.9E-21 131.4 10.0 127 28-167 37-167 (500)
70 2vl7_A XPD; helicase, unknown 99.7 9.9E-17 3.4E-21 131.3 8.5 128 25-163 5-189 (540)
71 3dmq_A RNA polymerase-associat 99.7 8.3E-17 2.9E-21 139.4 7.3 135 28-167 153-291 (968)
72 2whx_A Serine protease/ntpase/ 99.7 4.5E-17 1.5E-21 135.1 4.4 135 11-161 155-289 (618)
73 3mwy_W Chromo domain-containin 99.6 9.3E-16 3.2E-20 130.8 10.2 133 28-166 236-384 (800)
74 1z3i_X Similar to RAD54-like; 99.6 6.3E-15 2.2E-19 122.9 14.5 136 28-168 55-211 (644)
75 2v6i_A RNA helicase; membrane, 99.6 1.5E-15 5.2E-20 121.2 9.4 104 43-161 2-105 (431)
76 1yks_A Genome polyprotein [con 99.6 1.6E-16 5.5E-21 127.1 0.4 108 39-161 4-111 (440)
77 2z83_A Helicase/nucleoside tri 99.6 3.9E-15 1.3E-19 119.7 7.7 110 37-161 15-124 (459)
78 2wv9_A Flavivirin protease NS2 99.6 1.5E-15 5.1E-20 126.9 5.1 119 28-161 215-344 (673)
79 3rc3_A ATP-dependent RNA helic 99.5 5E-14 1.7E-18 117.6 9.8 108 41-170 153-260 (677)
80 3jux_A Protein translocase sub 99.3 1.6E-11 5.6E-16 102.0 13.9 134 24-165 72-261 (822)
81 4a15_A XPD helicase, ATP-depen 99.2 4.5E-11 1.5E-15 99.3 7.8 81 28-110 3-87 (620)
82 1w36_D RECD, exodeoxyribonucle 99.0 4.2E-09 1.4E-13 87.4 12.2 86 16-102 136-224 (608)
83 4b3f_X DNA-binding protein smu 98.9 2.1E-09 7E-14 89.8 8.1 67 28-97 189-256 (646)
84 2gk6_A Regulator of nonsense t 98.9 2.4E-08 8.2E-13 83.1 11.7 70 26-97 178-247 (624)
85 2xzl_A ATP-dependent helicase 98.8 5.3E-08 1.8E-12 83.0 11.3 69 27-97 359-427 (802)
86 2wjy_A Regulator of nonsense t 98.8 8.7E-08 3E-12 81.7 12.1 69 27-97 355-423 (800)
87 3e1s_A Exodeoxyribonuclease V, 98.7 1.1E-07 3.6E-12 78.4 9.5 64 27-93 188-251 (574)
88 3upu_A ATP-dependent DNA helic 98.6 1.4E-07 4.8E-12 75.7 9.4 72 21-94 18-94 (459)
89 3lfu_A DNA helicase II; SF1 he 98.0 2E-05 6.9E-10 65.5 8.2 81 27-109 8-91 (647)
90 2o0j_A Terminase, DNA packagin 97.9 5.3E-05 1.8E-09 59.3 8.3 122 28-163 163-287 (385)
91 1uaa_A REP helicase, protein ( 97.8 4.6E-05 1.6E-09 63.9 7.2 81 28-110 2-86 (673)
92 3cpe_A Terminase, DNA packagin 97.8 0.00024 8.3E-09 58.7 11.3 120 28-163 163-287 (592)
93 1pjr_A PCRA; DNA repair, DNA r 97.7 0.00011 3.7E-09 62.2 7.9 81 27-109 10-93 (724)
94 3u4q_A ATP-dependent helicase/ 97.6 0.00016 5.5E-09 64.5 8.1 69 27-97 9-80 (1232)
95 3vkw_A Replicase large subunit 97.4 0.00019 6.5E-09 57.1 5.6 86 43-161 161-246 (446)
96 1c4o_A DNA nucleotide excision 97.3 0.00051 1.8E-08 57.5 7.3 66 28-99 8-78 (664)
97 3ec2_A DNA replication protein 97.3 0.0013 4.5E-08 45.5 8.2 21 43-63 38-58 (180)
98 2d7d_A Uvrabc system protein B 97.2 0.0014 4.8E-08 54.9 9.0 67 28-100 12-83 (661)
99 3te6_A Regulatory protein SIR3 97.2 0.0069 2.4E-07 46.2 11.6 25 43-68 45-69 (318)
100 1xx6_A Thymidine kinase; NESG, 97.2 0.0008 2.7E-08 47.5 6.0 39 43-84 8-46 (191)
101 2kjq_A DNAA-related protein; s 97.1 0.00043 1.5E-08 46.9 4.1 28 34-62 28-55 (149)
102 1a5t_A Delta prime, HOLB; zinc 97.1 0.00082 2.8E-08 51.5 5.7 40 29-68 3-49 (334)
103 2b8t_A Thymidine kinase; deoxy 97.0 0.0053 1.8E-07 44.3 8.8 91 43-162 12-102 (223)
104 2j9r_A Thymidine kinase; TK1, 96.9 0.0014 4.7E-08 47.1 5.4 40 43-85 28-67 (214)
105 2chg_A Replication factor C sm 96.9 0.0069 2.3E-07 42.6 9.1 19 44-62 39-57 (226)
106 1d2n_A N-ethylmaleimide-sensit 96.9 0.0041 1.4E-07 46.0 7.9 22 43-64 64-85 (272)
107 1l8q_A Chromosomal replication 96.9 0.0057 1.9E-07 46.4 8.6 36 43-81 37-72 (324)
108 3bos_A Putative DNA replicatio 96.8 0.0024 8.2E-08 45.8 5.8 22 42-63 51-72 (242)
109 1w4r_A Thymidine kinase; type 96.7 0.0025 8.4E-08 45.1 5.2 38 43-83 20-57 (195)
110 2orv_A Thymidine kinase; TP4A 96.7 0.0034 1.1E-07 45.6 6.0 39 43-84 19-57 (234)
111 2p65_A Hypothetical protein PF 96.7 0.016 5.5E-07 39.6 9.1 21 43-63 43-63 (187)
112 3u61_B DNA polymerase accessor 96.6 0.016 5.3E-07 43.9 9.4 18 46-63 51-68 (324)
113 2v1u_A Cell division control p 96.6 0.009 3.1E-07 46.0 8.3 21 43-63 44-64 (387)
114 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0047 1.6E-07 44.4 5.6 40 43-85 28-67 (219)
115 2dr3_A UPF0273 protein PH0284; 96.5 0.033 1.1E-06 40.0 10.3 52 40-95 20-71 (247)
116 2z4s_A Chromosomal replication 96.4 0.011 3.8E-07 47.0 7.9 21 43-63 130-150 (440)
117 2qby_A CDC6 homolog 1, cell di 96.3 0.032 1.1E-06 42.7 9.8 20 43-62 45-64 (386)
118 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.03 1E-06 39.8 8.9 41 39-82 19-59 (235)
119 1g5t_A COB(I)alamin adenosyltr 96.3 0.032 1.1E-06 39.4 8.6 36 43-81 28-63 (196)
120 2zpa_A Uncharacterized protein 96.3 0.0052 1.8E-07 51.3 5.2 59 28-92 175-235 (671)
121 1iqp_A RFCS; clamp loader, ext 96.2 0.025 8.7E-07 42.4 8.3 19 45-63 48-66 (327)
122 2hjv_A ATP-dependent RNA helic 96.2 0.031 1.1E-06 37.9 8.0 73 74-157 35-111 (163)
123 1fnn_A CDC6P, cell division co 96.2 0.021 7.3E-07 44.0 8.0 18 45-62 46-63 (389)
124 3pfi_A Holliday junction ATP-d 96.1 0.015 5.1E-07 44.2 7.0 20 44-63 56-75 (338)
125 2qby_B CDC6 homolog 3, cell di 96.1 0.0071 2.4E-07 46.7 5.0 21 43-63 45-65 (384)
126 2rb4_A ATP-dependent RNA helic 96.1 0.046 1.6E-06 37.5 8.6 71 74-155 34-108 (175)
127 2gno_A DNA polymerase III, gam 95.9 0.019 6.5E-07 43.4 6.6 21 44-64 19-39 (305)
128 2r6a_A DNAB helicase, replicat 95.9 0.053 1.8E-06 43.2 9.4 43 39-83 199-241 (454)
129 1fuk_A Eukaryotic initiation f 95.9 0.058 2E-06 36.6 8.3 72 74-156 30-105 (165)
130 3bh0_A DNAB-like replicative h 95.9 0.055 1.9E-06 41.0 8.9 45 36-83 61-105 (315)
131 3pvs_A Replication-associated 95.9 0.014 4.7E-07 46.6 5.8 20 44-63 51-70 (447)
132 1sxj_E Activator 1 40 kDa subu 95.9 0.077 2.6E-06 40.4 9.8 19 44-62 37-55 (354)
133 2q6t_A DNAB replication FORK h 95.8 0.076 2.6E-06 42.2 9.8 42 40-83 197-238 (444)
134 1n0w_A DNA repair protein RAD5 95.8 0.15 5.1E-06 36.5 10.5 44 40-83 21-67 (243)
135 1hqc_A RUVB; extended AAA-ATPa 95.7 0.024 8.1E-07 42.7 6.4 21 43-63 38-58 (324)
136 2p6n_A ATP-dependent RNA helic 95.7 0.16 5.5E-06 35.4 10.3 71 74-155 54-128 (191)
137 3eaq_A Heat resistant RNA depe 95.7 0.051 1.7E-06 38.6 7.7 71 74-155 31-105 (212)
138 1t5i_A C_terminal domain of A 95.5 0.056 1.9E-06 37.0 7.1 73 74-157 31-107 (172)
139 3i5x_A ATP-dependent RNA helic 95.5 0.26 8.8E-06 40.1 12.1 89 61-157 326-418 (563)
140 2fna_A Conserved hypothetical 95.5 0.56 1.9E-05 35.3 13.5 20 44-63 31-50 (357)
141 3n70_A Transport activator; si 95.4 0.042 1.4E-06 36.5 6.1 21 41-61 22-42 (145)
142 3hjh_A Transcription-repair-co 95.3 0.18 6.3E-06 40.6 10.4 86 43-137 14-115 (483)
143 4b4t_M 26S protease regulatory 95.3 0.017 5.9E-07 45.9 4.3 60 3-65 175-237 (434)
144 3sqw_A ATP-dependent RNA helic 95.2 0.34 1.2E-05 39.6 12.1 86 64-157 278-367 (579)
145 2jgn_A DBX, DDX3, ATP-dependen 95.1 0.1 3.5E-06 36.2 7.5 88 53-155 29-120 (185)
146 3dm5_A SRP54, signal recogniti 95.0 0.1 3.6E-06 41.5 8.1 57 45-107 102-160 (443)
147 1sxj_B Activator 1 37 kDa subu 94.9 0.021 7.1E-07 42.8 3.7 21 44-64 43-63 (323)
148 2i4i_A ATP-dependent RNA helic 94.8 0.25 8.5E-06 38.3 9.8 72 73-155 275-350 (417)
149 1jr3_A DNA polymerase III subu 94.8 0.091 3.1E-06 40.2 7.2 20 45-64 40-59 (373)
150 1nlf_A Regulatory protein REPA 94.8 0.17 5.9E-06 37.3 8.4 28 38-65 25-52 (279)
151 3co5_A Putative two-component 94.7 0.025 8.5E-07 37.6 3.3 20 41-60 25-44 (143)
152 2orw_A Thymidine kinase; TMTK, 94.7 0.038 1.3E-06 38.5 4.3 39 43-84 3-41 (184)
153 2w58_A DNAI, primosome compone 94.7 0.084 2.9E-06 36.8 6.2 19 44-62 55-73 (202)
154 3cmu_A Protein RECA, recombina 94.5 0.064 2.2E-06 50.2 6.2 43 41-86 1425-1467(2050)
155 3h4m_A Proteasome-activating n 94.4 0.031 1.1E-06 41.3 3.5 57 5-63 13-71 (285)
156 2eyu_A Twitching motility prot 94.3 0.044 1.5E-06 40.4 4.1 22 40-61 22-43 (261)
157 3hws_A ATP-dependent CLP prote 94.3 0.11 3.6E-06 40.0 6.4 22 42-63 50-71 (363)
158 3i32_A Heat resistant RNA depe 94.2 0.14 4.9E-06 38.5 6.9 71 74-155 28-102 (300)
159 3pey_A ATP-dependent RNA helic 94.2 0.38 1.3E-05 36.7 9.4 75 74-159 243-321 (395)
160 1w36_B RECB, exodeoxyribonucle 94.0 0.13 4.4E-06 45.9 7.2 54 44-97 17-79 (1180)
161 2qgz_A Helicase loader, putati 93.9 0.064 2.2E-06 40.5 4.4 24 43-66 152-175 (308)
162 2v1x_A ATP-dependent DNA helic 93.8 0.48 1.6E-05 39.1 9.8 72 73-155 266-341 (591)
163 3jvv_A Twitching mobility prot 93.7 0.089 3E-06 40.7 5.0 19 42-60 122-140 (356)
164 4b4t_J 26S protease regulatory 93.7 0.1 3.5E-06 41.0 5.3 60 4-66 143-205 (405)
165 4b4t_H 26S protease regulatory 93.6 0.095 3.3E-06 41.9 5.1 60 3-65 203-265 (467)
166 1p9r_A General secretion pathw 93.6 0.13 4.4E-06 40.6 5.8 35 33-68 155-191 (418)
167 4b4t_L 26S protease subunit RP 93.6 0.056 1.9E-06 43.0 3.7 60 4-66 176-238 (437)
168 1e9r_A Conjugal transfer prote 93.6 0.077 2.6E-06 41.9 4.5 18 43-60 53-70 (437)
169 3u4q_B ATP-dependent helicase/ 93.4 0.065 2.2E-06 47.8 4.2 41 46-86 4-44 (1166)
170 1jbk_A CLPB protein; beta barr 93.3 0.15 5.1E-06 34.6 5.2 21 43-63 43-63 (195)
171 4ag6_A VIRB4 ATPase, type IV s 93.3 0.11 3.9E-06 40.3 5.1 25 42-66 34-58 (392)
172 3fht_A ATP-dependent RNA helic 93.2 0.34 1.2E-05 37.3 7.7 71 74-155 266-340 (412)
173 4b4t_K 26S protease regulatory 93.2 0.09 3.1E-06 41.7 4.3 58 4-64 167-227 (428)
174 3cf0_A Transitional endoplasmi 93.2 0.044 1.5E-06 41.1 2.5 58 4-63 10-69 (301)
175 1yks_A Genome polyprotein [con 93.1 0.27 9.2E-06 39.0 7.0 69 74-154 177-245 (440)
176 2d7d_A Uvrabc system protein B 93.1 1.2 4.3E-05 37.1 11.3 78 74-162 445-526 (661)
177 2zts_A Putative uncharacterize 93.1 0.07 2.4E-06 38.3 3.3 41 41-83 28-68 (251)
178 1s2m_A Putative ATP-dependent 93.0 0.49 1.7E-05 36.4 8.2 71 74-155 258-332 (400)
179 2db3_A ATP-dependent RNA helic 92.9 0.75 2.6E-05 36.2 9.3 69 76-155 302-374 (434)
180 2i1q_A DNA repair and recombin 92.9 0.13 4.3E-06 38.9 4.7 54 43-96 98-165 (322)
181 3b85_A Phosphate starvation-in 92.9 0.12 4.2E-06 36.6 4.3 35 28-62 7-41 (208)
182 1wp9_A ATP-dependent RNA helic 92.9 0.6 2E-05 36.5 8.7 95 52-158 340-446 (494)
183 1ofh_A ATP-dependent HSL prote 92.8 0.37 1.2E-05 35.7 7.1 21 43-63 50-70 (310)
184 3nbx_X ATPase RAVA; AAA+ ATPas 92.8 0.17 5.7E-06 41.0 5.5 36 25-60 23-58 (500)
185 2x8a_A Nuclear valosin-contain 92.6 0.042 1.4E-06 40.8 1.6 56 4-62 5-63 (274)
186 2r44_A Uncharacterized protein 92.6 0.14 4.8E-06 38.7 4.6 33 30-62 33-65 (331)
187 1xti_A Probable ATP-dependent 92.6 0.57 2E-05 35.8 8.1 73 74-157 250-326 (391)
188 1um8_A ATP-dependent CLP prote 92.5 0.4 1.4E-05 36.9 7.1 21 43-63 72-92 (376)
189 2bjv_A PSP operon transcriptio 92.4 0.37 1.3E-05 35.1 6.5 20 42-61 28-47 (265)
190 2oap_1 GSPE-2, type II secreti 92.4 0.17 5.9E-06 41.0 5.0 38 30-68 246-284 (511)
191 2j0s_A ATP-dependent RNA helic 92.4 0.52 1.8E-05 36.4 7.7 72 74-156 276-351 (410)
192 3vaa_A Shikimate kinase, SK; s 92.3 0.1 3.6E-06 36.4 3.2 24 41-64 23-46 (199)
193 3kl4_A SRP54, signal recogniti 92.3 0.45 1.6E-05 37.7 7.2 57 44-106 98-156 (433)
194 3eie_A Vacuolar protein sortin 92.2 0.13 4.5E-06 38.8 4.0 58 4-64 13-72 (322)
195 1oyw_A RECQ helicase, ATP-depe 92.2 0.56 1.9E-05 38.0 7.8 71 74-155 236-310 (523)
196 1tue_A Replication protein E1; 92.2 0.096 3.3E-06 37.3 2.9 19 44-62 59-77 (212)
197 4b4t_I 26S protease regulatory 92.1 0.13 4.6E-06 40.7 3.9 61 3-66 176-239 (437)
198 2yjt_D ATP-dependent RNA helic 91.3 0.027 9.4E-07 38.5 0.0 54 74-131 30-87 (170)
199 1c9k_A COBU, adenosylcobinamid 92.0 0.2 6.7E-06 34.8 4.3 44 46-96 2-45 (180)
200 2wv9_A Flavivirin protease NS2 92.0 0.72 2.5E-05 38.7 8.4 69 74-154 410-478 (673)
201 3syl_A Protein CBBX; photosynt 91.8 0.1 3.5E-06 38.9 2.9 20 43-62 67-86 (309)
202 1kgd_A CASK, peripheral plasma 91.7 0.14 4.6E-06 35.2 3.3 21 42-62 4-24 (180)
203 2cvh_A DNA repair and recombin 91.7 0.13 4.4E-06 36.2 3.2 38 40-83 17-54 (220)
204 2v6i_A RNA helicase; membrane, 91.7 0.43 1.5E-05 37.6 6.5 55 74-132 171-225 (431)
205 1c4o_A DNA nucleotide excision 91.7 2.3 7.9E-05 35.6 11.2 77 74-161 439-519 (664)
206 3trf_A Shikimate kinase, SK; a 91.7 0.13 4.4E-06 35.3 3.1 22 43-64 5-26 (185)
207 3vkg_A Dynein heavy chain, cyt 91.7 0.63 2.1E-05 45.7 8.4 48 13-61 873-924 (3245)
208 3iij_A Coilin-interacting nucl 91.6 0.14 4.8E-06 35.0 3.2 23 41-63 9-31 (180)
209 2iut_A DNA translocase FTSK; n 91.6 0.38 1.3E-05 39.5 6.1 42 43-84 214-256 (574)
210 1lvg_A Guanylate kinase, GMP k 91.5 0.14 4.9E-06 35.8 3.2 21 42-62 3-23 (198)
211 2z43_A DNA repair and recombin 91.5 0.19 6.5E-06 38.1 4.1 43 43-85 107-152 (324)
212 2qor_A Guanylate kinase; phosp 91.4 0.14 5E-06 35.8 3.2 24 40-63 9-32 (204)
213 2qz4_A Paraplegin; AAA+, SPG7, 91.4 0.14 4.7E-06 37.1 3.2 21 43-63 39-59 (262)
214 1u0j_A DNA replication protein 91.4 0.53 1.8E-05 34.8 6.3 49 14-65 72-126 (267)
215 3b9p_A CG5977-PA, isoform A; A 91.4 0.13 4.4E-06 38.2 3.1 21 43-63 54-74 (297)
216 1ixz_A ATP-dependent metallopr 91.4 0.14 4.7E-06 37.2 3.1 57 3-62 10-68 (254)
217 2ius_A DNA translocase FTSK; n 91.3 0.33 1.1E-05 39.3 5.5 42 42-83 166-208 (512)
218 2jlq_A Serine protease subunit 91.3 1.1 3.6E-05 35.6 8.4 69 74-154 188-256 (451)
219 2gza_A Type IV secretion syste 91.3 0.15 5E-06 39.4 3.3 21 40-60 172-192 (361)
220 1qhx_A CPT, protein (chloramph 91.2 0.12 3.9E-06 35.2 2.5 20 43-62 3-22 (178)
221 3tau_A Guanylate kinase, GMP k 91.2 0.16 5.5E-06 35.8 3.2 22 42-63 7-28 (208)
222 1ojl_A Transcriptional regulat 91.1 0.45 1.5E-05 35.7 5.8 20 42-61 24-43 (304)
223 2zr9_A Protein RECA, recombina 91.1 0.2 6.8E-06 38.5 3.9 42 40-84 58-99 (349)
224 2j41_A Guanylate kinase; GMP, 91.0 0.16 5.4E-06 35.4 3.1 22 41-62 4-25 (207)
225 3tr0_A Guanylate kinase, GMP k 91.0 0.17 5.6E-06 35.3 3.2 21 42-62 6-26 (205)
226 1zp6_A Hypothetical protein AT 91.0 0.11 3.9E-06 35.7 2.3 22 40-61 6-27 (191)
227 1v5w_A DMC1, meiotic recombina 91.0 0.28 9.5E-06 37.5 4.6 42 43-84 122-166 (343)
228 2eyq_A TRCF, transcription-rep 91.0 0.3 1E-05 43.6 5.3 78 74-160 812-893 (1151)
229 3uk6_A RUVB-like 2; hexameric 91.0 0.13 4.5E-06 39.3 2.8 22 43-64 70-91 (368)
230 1u94_A RECA protein, recombina 91.0 0.23 7.9E-06 38.3 4.2 42 40-84 60-101 (356)
231 1kag_A SKI, shikimate kinase I 90.9 0.19 6.6E-06 33.9 3.4 20 43-62 4-23 (173)
232 3lw7_A Adenylate kinase relate 90.9 0.12 4.1E-06 34.7 2.3 19 45-63 3-21 (179)
233 4akg_A Glutathione S-transfera 90.9 0.63 2.1E-05 45.0 7.6 48 14-62 891-942 (2695)
234 3vfd_A Spastin; ATPase, microt 90.8 0.34 1.2E-05 37.6 5.1 21 43-63 148-168 (389)
235 2r2a_A Uncharacterized protein 90.7 0.24 8.1E-06 34.9 3.7 23 45-67 7-29 (199)
236 2px0_A Flagellar biosynthesis 90.7 0.28 9.7E-06 36.8 4.4 37 43-81 105-141 (296)
237 1cr0_A DNA primase/helicase; R 90.6 0.26 8.9E-06 36.6 4.1 42 39-82 31-72 (296)
238 2ehv_A Hypothetical protein PH 90.6 0.26 8.9E-06 35.3 4.0 30 39-68 26-55 (251)
239 1hv8_A Putative ATP-dependent 90.6 0.91 3.1E-05 34.2 7.2 71 74-155 238-312 (367)
240 3a8t_A Adenylate isopentenyltr 90.6 0.16 5.3E-06 39.0 2.8 22 43-64 40-61 (339)
241 1lv7_A FTSH; alpha/beta domain 90.6 0.17 5.8E-06 36.7 3.0 21 43-63 45-65 (257)
242 1xwi_A SKD1 protein; VPS4B, AA 90.5 0.18 6E-06 38.3 3.1 58 4-64 7-66 (322)
243 1sxj_D Activator 1 41 kDa subu 90.5 0.27 9.1E-06 37.2 4.1 20 44-63 59-78 (353)
244 2qp9_X Vacuolar protein sortin 90.5 0.38 1.3E-05 37.0 5.0 22 43-64 84-105 (355)
245 3hr8_A Protein RECA; alpha and 90.4 0.16 5.3E-06 39.3 2.7 43 41-86 59-101 (356)
246 2qmh_A HPR kinase/phosphorylas 90.3 0.17 5.9E-06 35.8 2.6 22 43-64 34-55 (205)
247 1y63_A LMAJ004144AAA protein; 90.3 0.22 7.5E-06 34.3 3.2 22 43-64 10-31 (184)
248 1iy2_A ATP-dependent metallopr 90.2 0.2 6.7E-06 36.9 3.1 55 4-61 35-91 (278)
249 2c9o_A RUVB-like 1; hexameric 90.1 0.19 6.5E-06 40.0 3.1 22 43-64 63-84 (456)
250 3t15_A Ribulose bisphosphate c 90.1 0.17 5.9E-06 37.7 2.7 21 44-64 37-57 (293)
251 2r8r_A Sensor protein; KDPD, P 90.1 0.35 1.2E-05 34.9 4.2 25 45-69 8-32 (228)
252 1njg_A DNA polymerase III subu 90.1 0.41 1.4E-05 33.6 4.6 19 45-63 47-65 (250)
253 3bgw_A DNAB-like replicative h 89.9 0.55 1.9E-05 37.3 5.6 42 39-83 193-234 (444)
254 4gp7_A Metallophosphoesterase; 89.9 0.13 4.5E-06 35.1 1.8 21 41-61 7-27 (171)
255 4a15_A XPD helicase, ATP-depen 89.8 0.075 2.6E-06 44.1 0.6 43 120-163 171-218 (620)
256 1sxj_A Activator 1 95 kDa subu 89.8 0.65 2.2E-05 37.6 6.0 22 44-65 78-99 (516)
257 1z6g_A Guanylate kinase; struc 89.7 0.28 9.4E-06 34.9 3.4 22 40-61 20-41 (218)
258 2ze6_A Isopentenyl transferase 89.7 0.23 7.7E-06 36.3 3.0 20 45-64 3-22 (253)
259 2pt7_A CAG-ALFA; ATPase, prote 89.6 0.34 1.2E-05 36.9 4.1 21 40-60 168-188 (330)
260 3kb2_A SPBC2 prophage-derived 89.4 0.25 8.5E-06 33.2 2.9 19 45-63 3-21 (173)
261 2r62_A Cell division protease 89.4 0.14 4.9E-06 37.3 1.8 22 43-64 44-65 (268)
262 2ewv_A Twitching motility prot 89.4 0.2 6.9E-06 38.8 2.7 21 41-61 134-154 (372)
263 3a00_A Guanylate kinase, GMP k 89.4 0.29 1E-05 33.7 3.3 18 44-61 2-19 (186)
264 3cm0_A Adenylate kinase; ATP-b 89.2 0.2 7E-06 34.2 2.4 21 43-63 4-24 (186)
265 1kht_A Adenylate kinase; phosp 89.2 0.29 9.9E-06 33.5 3.1 20 43-62 3-22 (192)
266 1s96_A Guanylate kinase, GMP k 89.1 0.3 1E-05 34.9 3.2 23 40-62 13-35 (219)
267 1xp8_A RECA protein, recombina 89.1 0.36 1.2E-05 37.4 3.9 43 40-85 71-113 (366)
268 3exa_A TRNA delta(2)-isopenten 89.0 0.27 9.1E-06 37.4 3.0 21 44-64 4-24 (322)
269 4dzz_A Plasmid partitioning pr 89.0 1.5 5.2E-05 30.2 6.8 31 49-82 8-38 (206)
270 3ney_A 55 kDa erythrocyte memb 89.0 0.33 1.1E-05 34.2 3.3 22 42-63 18-39 (197)
271 1ly1_A Polynucleotide kinase; 89.0 0.29 9.9E-06 33.1 3.0 19 45-63 4-22 (181)
272 3f9v_A Minichromosome maintena 88.9 0.16 5.6E-06 41.9 1.9 16 45-60 329-344 (595)
273 3tbk_A RIG-I helicase domain; 88.9 1.5 5.1E-05 35.1 7.6 94 54-155 370-476 (555)
274 4eun_A Thermoresistant glucoki 88.9 0.31 1.1E-05 33.9 3.1 22 42-63 28-49 (200)
275 1in4_A RUVB, holliday junction 88.8 0.29 1E-05 37.2 3.2 21 44-64 52-72 (334)
276 3foz_A TRNA delta(2)-isopenten 88.8 0.29 9.7E-06 37.1 3.0 20 45-64 12-31 (316)
277 3d8b_A Fidgetin-like protein 1 88.7 0.29 1E-05 37.6 3.1 22 43-64 117-138 (357)
278 2xau_A PRE-mRNA-splicing facto 88.7 2.3 7.7E-05 36.3 8.8 74 74-154 303-392 (773)
279 1znw_A Guanylate kinase, GMP k 88.6 0.34 1.2E-05 34.0 3.2 23 39-61 16-38 (207)
280 4fcw_A Chaperone protein CLPB; 88.6 0.27 9.3E-06 36.5 2.8 19 44-62 48-66 (311)
281 2v54_A DTMP kinase, thymidylat 88.6 0.32 1.1E-05 33.7 3.0 22 42-63 3-24 (204)
282 4a1f_A DNAB helicase, replicat 88.5 0.81 2.8E-05 35.0 5.4 46 35-83 38-83 (338)
283 1knq_A Gluconate kinase; ALFA/ 88.5 0.3 1E-05 33.1 2.8 20 43-62 8-27 (175)
284 2c95_A Adenylate kinase 1; tra 88.5 0.33 1.1E-05 33.3 3.1 23 41-63 7-29 (196)
285 1ex7_A Guanylate kinase; subst 88.4 0.29 1E-05 34.1 2.7 19 44-62 2-20 (186)
286 1vma_A Cell division protein F 88.4 0.49 1.7E-05 35.7 4.1 35 44-81 105-139 (306)
287 1zuh_A Shikimate kinase; alpha 88.3 0.35 1.2E-05 32.5 3.0 21 44-64 8-28 (168)
288 3io5_A Recombination and repai 88.2 0.33 1.1E-05 37.0 3.0 43 42-86 28-70 (333)
289 3cf2_A TER ATPase, transitiona 88.2 0.47 1.6E-05 40.7 4.2 59 5-64 473-532 (806)
290 2oca_A DAR protein, ATP-depend 88.1 6 0.00021 31.5 10.6 88 75-176 348-439 (510)
291 3eiq_A Eukaryotic initiation f 88.1 0.47 1.6E-05 36.6 4.0 71 74-155 280-354 (414)
292 2yvu_A Probable adenylyl-sulfa 88.1 0.62 2.1E-05 31.9 4.2 21 43-63 13-33 (186)
293 1rj9_A FTSY, signal recognitio 88.0 0.71 2.4E-05 34.7 4.8 36 43-81 102-137 (304)
294 3crm_A TRNA delta(2)-isopenten 87.9 0.35 1.2E-05 36.8 3.0 22 44-65 6-27 (323)
295 2zan_A Vacuolar protein sortin 87.6 0.35 1.2E-05 38.4 3.0 22 43-64 167-188 (444)
296 1via_A Shikimate kinase; struc 87.5 0.45 1.5E-05 32.2 3.2 20 45-64 6-25 (175)
297 2chq_A Replication factor C sm 87.5 0.83 2.8E-05 33.8 4.9 19 45-63 40-58 (319)
298 3uie_A Adenylyl-sulfate kinase 87.5 0.37 1.3E-05 33.5 2.8 21 42-62 24-44 (200)
299 1sxj_C Activator 1 40 kDa subu 87.4 0.61 2.1E-05 35.3 4.2 20 45-64 48-67 (340)
300 3b9q_A Chloroplast SRP recepto 87.4 0.62 2.1E-05 35.0 4.1 36 43-81 100-135 (302)
301 3t61_A Gluconokinase; PSI-biol 87.4 0.44 1.5E-05 33.1 3.2 20 44-63 19-38 (202)
302 1zu4_A FTSY; GTPase, signal re 87.3 0.64 2.2E-05 35.2 4.2 36 43-81 105-140 (320)
303 2rhm_A Putative kinase; P-loop 87.3 0.31 1.1E-05 33.4 2.3 21 43-63 5-25 (193)
304 1g8p_A Magnesium-chelatase 38 87.2 0.23 7.7E-06 37.6 1.7 21 43-63 45-65 (350)
305 2bdt_A BH3686; alpha-beta prot 87.2 0.31 1.1E-05 33.5 2.2 20 44-63 3-22 (189)
306 3k1j_A LON protease, ATP-depen 87.1 1.2 4E-05 36.8 6.0 24 38-61 55-78 (604)
307 2iyv_A Shikimate kinase, SK; t 87.1 0.52 1.8E-05 32.1 3.3 20 44-63 3-22 (184)
308 2qt1_A Nicotinamide riboside k 87.1 0.25 8.6E-06 34.5 1.7 25 39-63 17-41 (207)
309 1pzn_A RAD51, DNA repair and r 87.1 0.47 1.6E-05 36.4 3.4 41 43-83 131-174 (349)
310 3pxg_A Negative regulator of g 87.0 0.38 1.3E-05 38.4 3.0 22 43-64 201-222 (468)
311 3lnc_A Guanylate kinase, GMP k 87.0 0.25 8.5E-06 35.3 1.7 23 40-62 24-46 (231)
312 3d3q_A TRNA delta(2)-isopenten 86.9 0.42 1.4E-05 36.7 3.0 21 45-65 9-29 (340)
313 2bwj_A Adenylate kinase 5; pho 86.9 0.43 1.5E-05 32.9 2.9 22 42-63 11-32 (199)
314 1aky_A Adenylate kinase; ATP:A 86.9 0.5 1.7E-05 33.3 3.3 21 43-63 4-24 (220)
315 3fb4_A Adenylate kinase; psych 86.9 0.42 1.4E-05 33.5 2.8 19 45-63 2-20 (216)
316 4anj_A Unconventional myosin-V 86.9 0.81 2.8E-05 40.4 5.0 63 5-67 97-168 (1052)
317 3dl0_A Adenylate kinase; phosp 86.8 0.43 1.5E-05 33.5 2.8 19 45-63 2-20 (216)
318 4a74_A DNA repair and recombin 86.7 0.32 1.1E-05 34.3 2.1 44 40-83 22-68 (231)
319 1e6c_A Shikimate kinase; phosp 86.7 0.55 1.9E-05 31.5 3.2 20 44-63 3-22 (173)
320 3tlx_A Adenylate kinase 2; str 86.3 0.66 2.3E-05 33.5 3.7 22 43-64 29-50 (243)
321 2v9p_A Replication protein E1; 86.2 0.5 1.7E-05 35.6 3.0 21 41-61 124-144 (305)
322 3nwj_A ATSK2; P loop, shikimat 86.1 0.62 2.1E-05 34.0 3.5 21 43-63 48-68 (250)
323 1f2t_A RAD50 ABC-ATPase; DNA d 86.1 0.61 2.1E-05 31.0 3.2 17 44-60 24-40 (149)
324 1ye8_A Protein THEP1, hypothet 86.1 0.55 1.9E-05 32.3 3.0 16 45-60 2-17 (178)
325 1zd8_A GTP:AMP phosphotransfer 86.1 0.49 1.7E-05 33.6 2.9 21 43-63 7-27 (227)
326 1tev_A UMP-CMP kinase; ploop, 86.1 0.54 1.8E-05 32.1 3.0 19 44-62 4-22 (196)
327 2ykg_A Probable ATP-dependent 86.0 1.6 5.4E-05 36.3 6.3 76 74-156 398-486 (696)
328 1nks_A Adenylate kinase; therm 86.0 0.48 1.7E-05 32.3 2.7 18 45-62 3-20 (194)
329 1gvn_B Zeta; postsegregational 85.9 0.47 1.6E-05 35.3 2.8 21 43-63 33-53 (287)
330 1q57_A DNA primase/helicase; d 85.8 0.61 2.1E-05 37.5 3.6 42 40-83 239-280 (503)
331 3kta_A Chromosome segregation 85.8 0.55 1.9E-05 31.9 2.9 17 45-61 28-44 (182)
332 1zak_A Adenylate kinase; ATP:A 85.7 0.56 1.9E-05 33.1 3.0 21 43-63 5-25 (222)
333 2pez_A Bifunctional 3'-phospho 85.7 0.56 1.9E-05 31.9 2.9 20 43-62 5-24 (179)
334 1m7g_A Adenylylsulfate kinase; 85.6 0.53 1.8E-05 33.1 2.8 31 31-62 14-44 (211)
335 2z83_A Helicase/nucleoside tri 85.5 1.5 5.2E-05 34.8 5.7 54 74-131 190-243 (459)
336 1cke_A CK, MSSA, protein (cyti 85.5 0.61 2.1E-05 32.9 3.1 20 44-63 6-25 (227)
337 2plr_A DTMP kinase, probable t 85.4 0.55 1.9E-05 32.6 2.8 21 43-63 4-24 (213)
338 1qf9_A UMP/CMP kinase, protein 85.3 0.53 1.8E-05 32.1 2.7 20 44-63 7-26 (194)
339 1ak2_A Adenylate kinase isoenz 85.3 0.64 2.2E-05 33.2 3.2 22 43-64 16-37 (233)
340 4gl2_A Interferon-induced heli 85.3 0.46 1.6E-05 39.6 2.7 74 74-154 400-487 (699)
341 3lda_A DNA repair protein RAD5 85.3 0.73 2.5E-05 36.1 3.7 41 43-83 178-221 (400)
342 2cdn_A Adenylate kinase; phosp 85.2 0.66 2.3E-05 32.1 3.2 20 44-63 21-40 (201)
343 2wwf_A Thymidilate kinase, put 85.2 0.59 2E-05 32.5 2.9 22 42-63 9-30 (212)
344 2og2_A Putative signal recogni 85.2 0.91 3.1E-05 35.1 4.1 36 43-81 157-192 (359)
345 1g41_A Heat shock protein HSLU 85.1 0.63 2.1E-05 37.0 3.2 20 43-62 50-69 (444)
346 3nwn_A Kinesin-like protein KI 85.1 0.66 2.2E-05 35.9 3.3 23 38-60 98-122 (359)
347 3e70_C DPA, signal recognition 85.0 0.98 3.4E-05 34.4 4.2 36 43-81 129-164 (328)
348 2jaq_A Deoxyguanosine kinase; 85.0 0.65 2.2E-05 32.0 3.0 19 45-63 2-20 (205)
349 3hu3_A Transitional endoplasmi 84.9 0.6 2.1E-05 37.6 3.1 21 43-63 238-258 (489)
350 2i3b_A HCR-ntpase, human cance 84.9 0.79 2.7E-05 31.9 3.4 19 43-61 1-19 (189)
351 3umf_A Adenylate kinase; rossm 84.9 0.56 1.9E-05 33.5 2.6 25 40-64 26-50 (217)
352 3pxi_A Negative regulator of g 84.8 1.3 4.3E-05 37.6 5.2 22 43-64 201-222 (758)
353 1nn5_A Similar to deoxythymidy 84.8 0.62 2.1E-05 32.5 2.8 22 42-63 8-29 (215)
354 3eph_A TRNA isopentenyltransfe 84.7 0.54 1.9E-05 36.9 2.7 20 45-64 4-23 (409)
355 3c8u_A Fructokinase; YP_612366 84.7 0.59 2E-05 32.7 2.7 18 43-60 22-39 (208)
356 3tif_A Uncharacterized ABC tra 84.7 0.47 1.6E-05 34.2 2.2 26 42-69 30-55 (235)
357 1jjv_A Dephospho-COA kinase; P 84.7 0.66 2.3E-05 32.2 2.9 19 45-63 4-22 (206)
358 1ukz_A Uridylate kinase; trans 84.5 0.69 2.3E-05 32.0 3.0 19 44-62 16-34 (203)
359 2z0h_A DTMP kinase, thymidylat 84.4 0.7 2.4E-05 31.7 3.0 17 46-62 3-19 (197)
360 2pt5_A Shikimate kinase, SK; a 84.3 0.76 2.6E-05 30.7 3.0 19 45-63 2-20 (168)
361 2pbr_A DTMP kinase, thymidylat 84.3 0.72 2.5E-05 31.5 2.9 18 46-63 3-20 (195)
362 1e4v_A Adenylate kinase; trans 84.1 0.6 2.1E-05 32.8 2.5 20 45-64 2-21 (214)
363 1bg2_A Kinesin; motor protein, 84.1 0.89 3E-05 34.6 3.5 22 39-60 72-95 (325)
364 3asz_A Uridine kinase; cytidin 84.0 0.62 2.1E-05 32.5 2.5 19 43-61 6-24 (211)
365 2v3c_C SRP54, signal recogniti 84.0 0.81 2.8E-05 36.3 3.4 35 44-81 100-134 (432)
366 3m6a_A ATP-dependent protease 84.0 0.67 2.3E-05 37.8 3.0 19 43-61 108-126 (543)
367 3a4m_A L-seryl-tRNA(SEC) kinas 83.9 0.55 1.9E-05 34.3 2.3 20 44-63 5-24 (260)
368 2bbw_A Adenylate kinase 4, AK4 83.9 0.8 2.7E-05 32.9 3.2 20 43-62 27-46 (246)
369 4db1_A Myosin-7; S1DC, cardiac 83.8 1.1 3.7E-05 38.3 4.3 63 5-67 125-195 (783)
370 1f9v_A Kinesin-like protein KA 83.7 1 3.5E-05 34.6 3.8 25 37-61 77-103 (347)
371 3bs4_A Uncharacterized protein 83.7 1.5 5E-05 32.3 4.5 42 42-86 20-61 (260)
372 1g8x_A Myosin II heavy chain f 83.6 1.4 4.7E-05 38.8 5.0 62 5-66 126-195 (1010)
373 2if2_A Dephospho-COA kinase; a 83.6 0.72 2.5E-05 32.0 2.7 18 45-62 3-20 (204)
374 3dc4_A Kinesin-like protein NO 83.6 0.8 2.7E-05 35.2 3.1 20 41-60 91-112 (344)
375 1lkx_A Myosin IE heavy chain; 83.5 1 3.5E-05 37.9 4.0 64 5-68 48-119 (697)
376 2z0m_A 337AA long hypothetical 83.5 2.4 8.1E-05 31.4 5.8 69 74-157 220-292 (337)
377 2whx_A Serine protease/ntpase/ 83.5 2.9 9.8E-05 34.7 6.6 55 74-132 355-409 (618)
378 4etp_A Kinesin-like protein KA 83.5 0.93 3.2E-05 35.6 3.5 26 36-61 132-159 (403)
379 1ls1_A Signal recognition part 83.5 1.3 4.5E-05 33.0 4.2 36 43-81 98-133 (295)
380 2vli_A Antibiotic resistance p 83.4 0.61 2.1E-05 31.6 2.3 21 43-63 5-25 (183)
381 3t0q_A AGR253WP; kinesin, alph 83.4 0.98 3.4E-05 34.7 3.6 26 36-61 77-104 (349)
382 3sr0_A Adenylate kinase; phosp 83.4 0.82 2.8E-05 32.3 3.0 20 46-65 3-22 (206)
383 1w7j_A Myosin VA; motor protei 83.3 1.2 4E-05 38.2 4.3 64 5-68 110-181 (795)
384 2ce7_A Cell division protein F 83.3 0.76 2.6E-05 36.9 3.0 21 43-63 49-69 (476)
385 3cmw_A Protein RECA, recombina 83.3 1.1 3.7E-05 41.6 4.2 44 40-86 31-74 (1706)
386 1w9i_A Myosin II heavy chain; 83.2 1.2 4.1E-05 37.9 4.3 62 5-66 126-195 (770)
387 3be4_A Adenylate kinase; malar 83.2 0.8 2.7E-05 32.3 2.9 22 43-64 5-26 (217)
388 3cmu_A Protein RECA, recombina 83.2 1.2 3.9E-05 42.1 4.4 44 39-85 1077-1120(2050)
389 2vvg_A Kinesin-2; motor protei 83.1 1 3.5E-05 34.7 3.5 21 40-60 85-107 (350)
390 3tqc_A Pantothenate kinase; bi 83.1 1.7 5.7E-05 33.0 4.7 16 45-60 94-109 (321)
391 3lre_A Kinesin-like protein KI 83.1 1 3.5E-05 34.7 3.6 21 40-60 101-123 (355)
392 2zfi_A Kinesin-like protein KI 82.9 1 3.5E-05 34.8 3.5 22 39-60 84-107 (366)
393 2y65_A Kinesin, kinesin heavy 82.9 1 3.5E-05 34.8 3.5 22 39-60 79-102 (365)
394 2xb4_A Adenylate kinase; ATP-b 82.9 0.88 3E-05 32.3 3.0 20 45-64 2-21 (223)
395 3qf7_A RAD50; ABC-ATPase, ATPa 82.9 0.88 3E-05 35.1 3.2 17 45-61 25-41 (365)
396 2yhs_A FTSY, cell division pro 82.8 1.2 4.1E-05 36.0 4.0 35 43-80 293-327 (503)
397 2h58_A Kinesin-like protein KI 82.8 1.1 3.7E-05 34.2 3.6 23 38-60 74-98 (330)
398 4a14_A Kinesin, kinesin-like p 82.7 1.1 3.7E-05 34.4 3.6 22 39-60 78-101 (344)
399 4akg_A Glutathione S-transfera 82.7 0.72 2.5E-05 44.6 3.0 24 40-63 1264-1287(2695)
400 4e22_A Cytidylate kinase; P-lo 82.6 0.94 3.2E-05 32.9 3.1 22 43-64 27-48 (252)
401 1v8k_A Kinesin-like protein KI 82.6 0.93 3.2E-05 35.7 3.2 23 39-61 149-173 (410)
402 2cbz_A Multidrug resistance-as 82.6 0.69 2.4E-05 33.4 2.3 20 41-60 29-48 (237)
403 1goj_A Kinesin, kinesin heavy 82.5 1.1 3.7E-05 34.6 3.5 22 39-60 75-98 (355)
404 4a2p_A RIG-I, retinoic acid in 82.5 2.7 9.3E-05 33.6 6.1 96 53-156 370-478 (556)
405 4a2w_A RIG-I, retinoic acid in 82.5 4.9 0.00017 35.0 7.9 97 53-157 611-720 (936)
406 3tqf_A HPR(Ser) kinase; transf 82.4 0.77 2.6E-05 31.8 2.4 24 42-65 15-38 (181)
407 3b6u_A Kinesin-like protein KI 82.3 1 3.4E-05 35.0 3.3 21 40-60 97-119 (372)
408 3qks_A DNA double-strand break 82.3 1.1 3.6E-05 31.5 3.2 17 44-60 24-40 (203)
409 1htw_A HI0065; nucleotide-bind 82.3 0.87 3E-05 30.7 2.6 20 41-60 31-50 (158)
410 3fmp_B ATP-dependent RNA helic 82.2 0.27 9.1E-06 39.1 0.0 70 74-154 333-406 (479)
411 2vhj_A Ntpase P4, P4; non- hyd 82.2 0.94 3.2E-05 34.5 3.0 26 41-66 121-146 (331)
412 2dfs_A Myosin-5A; myosin-V, in 82.2 1.3 4.4E-05 39.3 4.3 64 5-68 110-181 (1080)
413 1j8m_F SRP54, signal recogniti 82.2 1.1 3.9E-05 33.5 3.5 35 45-82 100-134 (297)
414 3gbj_A KIF13B protein; kinesin 82.1 1.1 3.6E-05 34.6 3.3 23 38-60 86-110 (354)
415 1sgw_A Putative ABC transporte 82.0 0.83 2.8E-05 32.5 2.6 20 41-60 33-52 (214)
416 2nr8_A Kinesin-like protein KI 81.9 1.1 3.6E-05 34.7 3.3 22 39-60 98-121 (358)
417 3dmq_A RNA polymerase-associat 81.7 2.2 7.6E-05 37.3 5.6 76 74-159 503-584 (968)
418 1ypw_A Transitional endoplasmi 81.7 0.53 1.8E-05 40.3 1.7 22 42-63 510-531 (806)
419 2heh_A KIF2C protein; kinesin, 81.6 1.2 3.9E-05 34.9 3.4 23 39-61 129-153 (387)
420 1x88_A Kinesin-like protein KI 81.6 1 3.5E-05 34.8 3.1 22 39-60 83-106 (359)
421 1np6_A Molybdopterin-guanine d 81.6 2.8 9.5E-05 28.7 5.0 18 44-61 7-24 (174)
422 1t5c_A CENP-E protein, centrom 81.6 1.1 3.8E-05 34.4 3.3 21 40-60 73-95 (349)
423 1uf9_A TT1252 protein; P-loop, 81.6 0.94 3.2E-05 31.2 2.7 18 45-62 10-27 (203)
424 2pcj_A ABC transporter, lipopr 81.6 0.64 2.2E-05 33.2 1.9 19 42-60 29-47 (224)
425 1tf7_A KAIC; homohexamer, hexa 81.6 1.4 4.9E-05 35.6 4.1 42 40-84 278-319 (525)
426 1kk8_A Myosin heavy chain, str 81.5 1.2 4.2E-05 38.3 3.8 63 5-67 123-193 (837)
427 3auy_A DNA double-strand break 81.5 0.95 3.2E-05 34.9 2.9 18 44-61 26-43 (371)
428 1ry6_A Internal kinesin; kines 81.5 1.1 3.6E-05 34.7 3.1 19 43-61 83-103 (360)
429 1xjc_A MOBB protein homolog; s 81.4 2.4 8.2E-05 28.9 4.6 17 45-61 6-22 (169)
430 1ypw_A Transitional endoplasmi 81.4 0.81 2.8E-05 39.2 2.7 22 42-63 237-258 (806)
431 2owm_A Nckin3-434, related to 81.4 1.2 4.3E-05 35.3 3.6 21 40-60 132-154 (443)
432 2pjz_A Hypothetical protein ST 81.4 1.7 5.8E-05 31.9 4.1 18 43-60 30-47 (263)
433 3cmw_A Protein RECA, recombina 81.4 1 3.6E-05 41.7 3.4 44 43-89 1431-1474(1706)
434 1z5z_A Helicase of the SNF2/RA 81.3 10 0.00035 27.7 8.4 91 52-155 93-189 (271)
435 3gfo_A Cobalt import ATP-bindi 81.3 0.81 2.8E-05 33.9 2.4 19 42-60 33-51 (275)
436 2ycu_A Non muscle myosin 2C, a 81.3 1.4 4.7E-05 38.8 4.1 62 5-66 100-169 (995)
437 3pxi_A Negative regulator of g 81.3 1.5 5.1E-05 37.2 4.3 19 45-63 523-541 (758)
438 2ffh_A Protein (FFH); SRP54, s 81.3 1.6 5.6E-05 34.4 4.2 35 44-81 99-133 (425)
439 2p5t_B PEZT; postsegregational 81.3 0.65 2.2E-05 33.7 1.8 21 43-63 32-52 (253)
440 2zu0_C Probable ATP-dependent 81.2 1 3.5E-05 33.1 2.9 19 42-60 45-63 (267)
441 3u06_A Protein claret segregat 81.2 1.2 3.9E-05 35.2 3.3 23 38-60 132-156 (412)
442 2pze_A Cystic fibrosis transme 81.2 0.83 2.8E-05 32.7 2.3 19 42-60 33-51 (229)
443 2ff7_A Alpha-hemolysin translo 81.1 0.81 2.8E-05 33.2 2.3 19 42-60 34-52 (247)
444 2grj_A Dephospho-COA kinase; T 81.1 1.1 3.9E-05 31.1 3.0 20 45-64 14-33 (192)
445 1g6h_A High-affinity branched- 81.1 0.75 2.6E-05 33.6 2.1 19 42-60 32-50 (257)
446 1ji0_A ABC transporter; ATP bi 81.0 0.77 2.6E-05 33.2 2.1 19 42-60 31-49 (240)
447 3o8b_A HCV NS3 protease/helica 81.0 3.6 0.00012 34.5 6.3 52 74-132 396-447 (666)
448 1b0u_A Histidine permease; ABC 81.0 0.8 2.7E-05 33.6 2.2 19 42-60 31-49 (262)
449 4a2q_A RIG-I, retinoic acid in 80.8 4.5 0.00015 34.4 7.1 96 53-156 611-719 (797)
450 2d2e_A SUFC protein; ABC-ATPas 80.8 1.1 3.6E-05 32.7 2.8 19 42-60 28-46 (250)
451 2wbe_C Bipolar kinesin KRP-130 80.7 1.1 3.9E-05 34.7 3.1 21 40-60 96-118 (373)
452 1r6b_X CLPA protein; AAA+, N-t 80.7 1 3.5E-05 38.1 3.1 22 43-64 207-228 (758)
453 2ghi_A Transport protein; mult 80.6 0.88 3E-05 33.3 2.3 19 42-60 45-63 (260)
454 2qi9_C Vitamin B12 import ATP- 80.6 0.82 2.8E-05 33.3 2.2 20 41-60 24-43 (249)
455 1vht_A Dephospho-COA kinase; s 80.5 1.2 4.2E-05 31.2 3.0 20 44-63 5-24 (218)
456 3bfn_A Kinesin-like protein KI 80.3 1.2 4.1E-05 34.8 3.1 32 29-60 75-116 (388)
457 3cob_A Kinesin heavy chain-lik 80.3 1.1 3.7E-05 34.8 2.8 23 38-60 73-97 (369)
458 2rep_A Kinesin-like protein KI 80.3 1.3 4.4E-05 34.4 3.3 23 38-60 109-133 (376)
459 2v26_A Myosin VI; calmodulin-b 80.3 2.6 8.8E-05 36.1 5.3 63 5-67 93-164 (784)
460 1mv5_A LMRA, multidrug resista 80.2 0.81 2.8E-05 33.1 2.0 19 42-60 27-45 (243)
461 4g1u_C Hemin import ATP-bindin 80.2 0.92 3.1E-05 33.4 2.3 19 42-60 36-54 (266)
462 1svm_A Large T antigen; AAA+ f 80.2 1.2 4.1E-05 34.6 3.1 21 42-62 168-188 (377)
463 1vpl_A ABC transporter, ATP-bi 80.0 0.91 3.1E-05 33.2 2.2 19 42-60 40-58 (256)
464 3nh6_A ATP-binding cassette SU 80.0 0.75 2.6E-05 34.7 1.8 26 42-69 79-104 (306)
465 2jeo_A Uridine-cytidine kinase 80.0 1.1 3.8E-05 32.2 2.7 20 43-62 25-44 (245)
466 2yz2_A Putative ABC transporte 79.9 0.89 3E-05 33.4 2.2 19 42-60 32-50 (266)
467 2olj_A Amino acid ABC transpor 79.8 0.92 3.1E-05 33.3 2.2 19 42-60 49-67 (263)
468 1byi_A Dethiobiotin synthase; 79.7 2.6 8.8E-05 29.5 4.5 33 47-82 6-38 (224)
469 2nq2_C Hypothetical ABC transp 79.4 0.92 3.2E-05 33.1 2.1 19 42-60 30-48 (253)
470 3cf2_A TER ATPase, transitiona 79.4 0.91 3.1E-05 38.9 2.3 19 43-61 238-256 (806)
471 4eaq_A DTMP kinase, thymidylat 79.3 1.3 4.5E-05 31.6 2.9 21 42-62 25-45 (229)
472 3h1t_A Type I site-specific re 79.3 10 0.00034 30.9 8.5 78 74-158 439-526 (590)
473 2va8_A SSO2462, SKI2-type heli 79.2 8.6 0.00029 32.2 8.2 74 74-154 252-361 (715)
474 1rz3_A Hypothetical protein rb 79.1 1.3 4.4E-05 30.8 2.7 19 43-61 22-40 (201)
475 1tf7_A KAIC; homohexamer, hexa 79.1 1.1 3.8E-05 36.2 2.7 32 39-70 35-66 (525)
476 2dhr_A FTSH; AAA+ protein, hex 79.1 1.2 4.2E-05 35.9 2.9 19 44-62 65-83 (499)
477 3zq6_A Putative arsenical pump 79.1 2 6.9E-05 32.4 4.0 34 45-81 16-49 (324)
478 1i84_S Smooth muscle myosin he 79.1 1.4 4.6E-05 39.6 3.4 63 5-67 123-193 (1184)
479 2ixe_A Antigen peptide transpo 79.1 1.1 3.6E-05 33.1 2.3 19 42-60 44-62 (271)
480 2woo_A ATPase GET3; tail-ancho 78.8 2.4 8.3E-05 32.0 4.4 33 45-80 21-53 (329)
481 3vkg_A Dynein heavy chain, cyt 78.6 1.2 4E-05 43.9 2.9 21 40-60 1301-1321(3245)
482 1ltq_A Polynucleotide kinase; 78.5 1.5 5E-05 32.5 3.0 19 45-63 4-22 (301)
483 2xxa_A Signal recognition part 78.5 2.4 8.3E-05 33.5 4.4 35 45-81 102-136 (433)
484 2ihy_A ABC transporter, ATP-bi 78.4 1.1 3.8E-05 33.2 2.3 19 42-60 46-64 (279)
485 3ug7_A Arsenical pump-driving 78.4 2.5 8.5E-05 32.3 4.3 34 45-81 28-61 (349)
486 3v9p_A DTMP kinase, thymidylat 78.2 1.3 4.5E-05 31.8 2.6 23 40-62 22-44 (227)
487 3ice_A Transcription terminati 78.1 2.2 7.5E-05 33.5 3.9 22 41-62 172-193 (422)
488 1r6b_X CLPA protein; AAA+, N-t 78.1 1.3 4.4E-05 37.5 2.8 18 45-62 490-507 (758)
489 2qen_A Walker-type ATPase; unk 78.0 2.5 8.4E-05 31.6 4.2 22 42-63 30-51 (350)
490 1nij_A Hypothetical protein YJ 78.0 2 6.8E-05 32.3 3.7 17 45-61 6-22 (318)
491 1ihu_A Arsenical pump-driving 77.9 2.5 8.5E-05 34.7 4.5 35 44-81 9-43 (589)
492 3mwy_W Chromo domain-containin 77.8 20 0.00067 30.6 10.1 62 53-121 554-615 (800)
493 2f1r_A Molybdopterin-guanine d 77.8 0.86 2.9E-05 31.2 1.4 17 45-61 4-20 (171)
494 3oiy_A Reverse gyrase helicase 77.8 3 0.0001 32.2 4.7 71 75-158 253-329 (414)
495 1uj2_A Uridine-cytidine kinase 77.7 1.6 5.5E-05 31.5 3.0 19 45-63 24-42 (252)
496 1odf_A YGR205W, hypothetical 3 77.5 1.6 5.6E-05 32.5 3.0 17 45-61 33-49 (290)
497 3qkt_A DNA double-strand break 77.5 1.7 5.9E-05 33.0 3.2 18 44-61 24-41 (339)
498 2vp4_A Deoxynucleoside kinase; 77.4 1.2 4E-05 31.8 2.1 18 43-60 20-37 (230)
499 1ko7_A HPR kinase/phosphatase; 77.1 6.2 0.00021 29.8 6.1 23 43-65 144-166 (314)
500 2f6r_A COA synthase, bifunctio 77.1 1.5 5.2E-05 32.4 2.7 20 45-64 77-96 (281)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.4e-34 Score=214.90 Aligned_cols=172 Identities=34% Similarity=0.439 Sum_probs=154.6
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-----CCCe
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-----PYGI 75 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-----~~~~ 75 (182)
.|+++.+|+++++++.+.+.+.+.|+..|+++|.++++.+.+|+++++++|||+|||.+++++++..+... ..++
T Consensus 24 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 24 CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 37889999999999999999999999999999999999999999999999999999999999999887643 2467
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
+++|++|+++|+.|+++.++.+.+..++++..++|+.........+.++++|+|+||+++.+++.. ....+++++++|+
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lVi 182 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVL 182 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEE
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEE
Confidence 899999999999999999999999999999999999988777777777899999999999999987 5567889999999
Q ss_pred eccccccccCChhHHHHH
Q psy4275 156 DEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 156 DE~h~~~~~~~~~~~~~~ 173 (182)
||||++.++++......+
T Consensus 183 DEah~l~~~~~~~~~~~i 200 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKI 200 (242)
T ss_dssp TTHHHHHHTTCHHHHHHH
T ss_pred eCHHHHhhhCcHHHHHHH
Confidence 999999998866554433
No 2
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=6.2e-34 Score=212.37 Aligned_cols=170 Identities=49% Similarity=0.749 Sum_probs=153.3
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..+|+++++++.+.+.+...|+..++++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++|+
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 46789999999999999999999999999999999999999999999999999999999999988777667789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++|+.|+++.++++....++++..+.|+.........+.++++|+|+||+++.+.+...+.+.+++++++|+||||++.+
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~ 200 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN 200 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc
Confidence 99999999999999998899999999998877766677788999999999999998875666788999999999999999
Q ss_pred cCChhHHHHH
Q psy4275 164 MTSLKFFFFF 173 (182)
Q Consensus 164 ~~~~~~~~~~ 173 (182)
+++...+..+
T Consensus 201 ~~~~~~l~~i 210 (249)
T 3ber_A 201 MDFETEVDKI 210 (249)
T ss_dssp TTCHHHHHHH
T ss_pred cChHHHHHHH
Confidence 8776554443
No 3
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-33 Score=203.22 Aligned_cols=167 Identities=32% Similarity=0.491 Sum_probs=148.9
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
.+|+++++++++.+.+.+.|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 57999999999999999999999999999999999999999999999999999999999998776666779999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 86 LAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
|+.|+++.++.+.+.. +.++..+.|+.........+.++++|+|+||+.+.+.+.. +...+++++++|+||||++.+.
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~ 161 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHhHhh
Confidence 9999999999998877 7889999998887766666777899999999999999877 5567888999999999999987
Q ss_pred CChhHHHHH
Q psy4275 165 TSLKFFFFF 173 (182)
Q Consensus 165 ~~~~~~~~~ 173 (182)
++...+..+
T Consensus 162 ~~~~~l~~i 170 (206)
T 1vec_A 162 DFVQIMEDI 170 (206)
T ss_dssp TTHHHHHHH
T ss_pred CcHHHHHHH
Confidence 765544443
No 4
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-33 Score=206.74 Aligned_cols=169 Identities=34% Similarity=0.513 Sum_probs=147.5
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..+|+++++++.+.+.+.+.|+..++++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++|+
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt 81 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPT 81 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCc
Confidence 34789999999999999999999999999999999999999999999999999999999999988776667799999999
Q ss_pred HHHHHHHHHHHHHhhccC----CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 84 RELAYQIGDQFLVLGKVM----NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
++|+.|+++.++++.... ++++..+.|+.........+.++++|+|+||+.+.+.++. +...+++++++|+||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCch
Confidence 999999999999988776 6888888888876655555556889999999999999877 55677889999999999
Q ss_pred cccccCChhHHHHH
Q psy4275 160 RLSLMTSLKFFFFF 173 (182)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (182)
++.++++......+
T Consensus 161 ~~~~~~~~~~l~~i 174 (219)
T 1q0u_A 161 LMLDMGFITDVDQI 174 (219)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHhhhChHHHHHHH
Confidence 99988876544433
No 5
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.7e-33 Score=204.74 Aligned_cols=170 Identities=31% Similarity=0.511 Sum_probs=144.2
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++++.+|+++++++.+.+.+.+.|+..++++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred CcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 67788999999999999999999999999999999999999999999999999999999999999887766677999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
|+++|+.|+++.++.+....+.++..+.|+.........+ .+++|+|+||+.+.+.+.. +...+++++++|+||||++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C-TTCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC-CCCCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhHH
Confidence 9999999999999999888899999998887655444443 3489999999999999877 5567888999999999999
Q ss_pred cccCChhHHHHH
Q psy4275 162 SLMTSLKFFFFF 173 (182)
Q Consensus 162 ~~~~~~~~~~~~ 173 (182)
.++++...+..+
T Consensus 168 ~~~~~~~~l~~i 179 (224)
T 1qde_A 168 LSSGFKEQIYQI 179 (224)
T ss_dssp HHTTCHHHHHHH
T ss_pred hhhhhHHHHHHH
Confidence 998876644443
No 6
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.5e-33 Score=207.63 Aligned_cols=171 Identities=35% Similarity=0.504 Sum_probs=141.8
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
|+++.+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++
T Consensus 26 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 105 (237)
T 3bor_A 26 NEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLA 105 (237)
T ss_dssp -CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 56788999999999999999999999999999999999999999999999999999999999999887655577999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCC-CcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKK-PHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
|+++|+.|+++.++.+....+.++..+.|+.........+..+ ++|+|+||+.+.+.+.. +...+++++++|+||||+
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHH
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchH
Confidence 9999999999999999888888998888887655544444444 89999999999999877 556788899999999999
Q ss_pred ccccCChhHHHHH
Q psy4275 161 LSLMTSLKFFFFF 173 (182)
Q Consensus 161 ~~~~~~~~~~~~~ 173 (182)
+.++++...+..+
T Consensus 185 ~~~~~~~~~l~~i 197 (237)
T 3bor_A 185 MLSRGFKDQIYEI 197 (237)
T ss_dssp HHHTTCHHHHHHH
T ss_pred hhccCcHHHHHHH
Confidence 9988876544433
No 7
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=6.7e-33 Score=204.41 Aligned_cols=168 Identities=28% Similarity=0.395 Sum_probs=144.7
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
|.+..+|+++++++.+.+.+.+.|+..++++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++
T Consensus 20 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 99 (230)
T 2oxc_A 20 LAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILA 99 (230)
T ss_dssp ----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 45678899999999999999999999999999999999999999999999999999999999999887665577999999
Q ss_pred CCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
|+++|+.|+++.++.+.... ++++..+.|+.....+...+ ++++|+|+||+.+.++++. +.+.+++++++|+||||+
T Consensus 100 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 100 PTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADK 177 (230)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCchH
Confidence 99999999999999988765 78999999988765554443 5789999999999999876 556678899999999999
Q ss_pred ccccC-ChhHHH
Q psy4275 161 LSLMT-SLKFFF 171 (182)
Q Consensus 161 ~~~~~-~~~~~~ 171 (182)
+.+++ +.....
T Consensus 178 ~~~~~~~~~~~~ 189 (230)
T 2oxc_A 178 LLEEGSFQEQIN 189 (230)
T ss_dssp HHSTTSSHHHHH
T ss_pred hhcCcchHHHHH
Confidence 99886 554443
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=205.92 Aligned_cols=171 Identities=34% Similarity=0.456 Sum_probs=144.6
Q ss_pred CCCccCCccC-CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC------CC
Q psy4275 1 MEDPIKSFTD-LKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED------PY 73 (182)
Q Consensus 1 ~~~~~~~~~~-~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~------~~ 73 (182)
+|++..+|++ +++++++.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||.+++++++..+... ..
T Consensus 14 ~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~ 93 (228)
T 3iuy_A 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRN 93 (228)
T ss_dssp CCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------C
T ss_pred CCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccC
Confidence 4889999999 7999999999999999999999999999999999999999999999999999998876542 24
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
+++++|++|+++|+.|+++.++.+. ..+.++..+.|+.........+.++++|+|+||+++.+++.. ....+++++++
T Consensus 94 ~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~l 171 (228)
T 3iuy_A 94 GPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYL 171 (228)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEE
Confidence 6789999999999999999999986 447888888888877766677778899999999999998877 55678899999
Q ss_pred EEeccccccccCChhHHHHH
Q psy4275 154 VLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 154 I~DE~h~~~~~~~~~~~~~~ 173 (182)
|+||||++.++++......+
T Consensus 172 ViDEah~~~~~~~~~~~~~i 191 (228)
T 3iuy_A 172 VIDEADKMLDMEFEPQIRKI 191 (228)
T ss_dssp EECCHHHHHHTTCHHHHHHH
T ss_pred EEECHHHHhccchHHHHHHH
Confidence 99999999998866655444
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=8.8e-33 Score=221.02 Aligned_cols=173 Identities=39% Similarity=0.556 Sum_probs=155.4
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-----CCee
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-----YGIF 76 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-----~~~~ 76 (182)
|+++.+|+++++++.+.+.+.+.|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+...+ .+++
T Consensus 52 p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~ 131 (434)
T 2db3_A 52 PQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQ 131 (434)
T ss_dssp CCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCS
T ss_pred CCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCcc
Confidence 67899999999999999999999999999999999999999999999999999999999999998876542 3568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEe
Q psy4275 77 ALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLD 156 (182)
Q Consensus 77 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~D 156 (182)
++|++|+++|+.|+++.++++....++++..++|+.....+...+.++++|+|+||+++.+++.+ ....+++++++|+|
T Consensus 132 ~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlD 210 (434)
T 2db3_A 132 VVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLD 210 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEE
T ss_pred EEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEc
Confidence 99999999999999999999998888999999999988777777778999999999999999987 55678899999999
Q ss_pred ccccccccCChhHHHHHHH
Q psy4275 157 EADRLSLMTSLKFFFFFFF 175 (182)
Q Consensus 157 E~h~~~~~~~~~~~~~~~~ 175 (182)
|||+|.++++......+..
T Consensus 211 Eah~~~~~gf~~~~~~i~~ 229 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMT 229 (434)
T ss_dssp THHHHTSTTTHHHHHHHHH
T ss_pred cHhhhhccCcHHHHHHHHH
Confidence 9999999987665544433
No 10
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-33 Score=208.41 Aligned_cols=172 Identities=37% Similarity=0.515 Sum_probs=151.9
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---------C
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---------Y 73 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---------~ 73 (182)
+++.+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||.+++++++..+.... .
T Consensus 20 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 20 NVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp SCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred CccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 3788999999999999999999999999999999999999999999999999999999999998875432 2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
+++++|++|+++|+.|+++.++.+....++++..+.|+.........+.++++|+|+||+++.+++.. ....+++++++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~l 178 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYI 178 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEE
Confidence 46899999999999999999999988888999999998887777677778899999999999999987 55678889999
Q ss_pred EEeccccccccCChhHHHHHHH
Q psy4275 154 VLDEADRLSLMTSLKFFFFFFF 175 (182)
Q Consensus 154 I~DE~h~~~~~~~~~~~~~~~~ 175 (182)
|+||||++.++++......+..
T Consensus 179 ViDEah~~~~~~~~~~~~~i~~ 200 (253)
T 1wrb_A 179 VLDEADRMLDMGFEPQIRKIIE 200 (253)
T ss_dssp EEETHHHHHHTTCHHHHHHHHH
T ss_pred EEeCHHHHHhCchHHHHHHHHh
Confidence 9999999999887665555443
No 11
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=202.78 Aligned_cols=169 Identities=36% Similarity=0.551 Sum_probs=145.4
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC----CCCeeE
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED----PYGIFA 77 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~----~~~~~~ 77 (182)
++++.+|+++++++.+.+.+.+.|+..|+++|.++++.+.+++++++++|||+|||.+++++++..+... ..+.++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 3567889999999999999999999999999999999999999999999999999999999998876542 235689
Q ss_pred EEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEec
Q psy4275 78 LVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 78 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE 157 (182)
+|++|+++|+.|+++.++.+....++++..+.|+.........+ ++++|+|+||+.+.+.+.....+.+++++++|+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999988889999999887765544443 57899999999999998775556788899999999
Q ss_pred cccccccCChhHHH
Q psy4275 158 ADRLSLMTSLKFFF 171 (182)
Q Consensus 158 ~h~~~~~~~~~~~~ 171 (182)
||++.++++...+.
T Consensus 180 ah~~~~~~~~~~~~ 193 (236)
T 2pl3_A 180 ADRILDMGFADTMN 193 (236)
T ss_dssp HHHHHHTTTHHHHH
T ss_pred hHHHhcCCcHHHHH
Confidence 99999888665443
No 12
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.6e-32 Score=197.98 Aligned_cols=160 Identities=34% Similarity=0.547 Sum_probs=140.3
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
...+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++|+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 34679999999999999999999999999999999999999999999999999999999999987765556689999999
Q ss_pred HHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 84 RELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
++|+.|+++.++++.+.. +.++..+.|+.........+. +.++|+|+||+.+.+.++. ....+++++++|+||||++
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCHHHH
Confidence 999999999999998776 789999999887655555444 3579999999999999887 5567889999999999999
Q ss_pred ccc
Q psy4275 162 SLM 164 (182)
Q Consensus 162 ~~~ 164 (182)
.++
T Consensus 171 ~~~ 173 (220)
T 1t6n_A 171 LEQ 173 (220)
T ss_dssp HSS
T ss_pred hcc
Confidence 874
No 13
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=208.54 Aligned_cols=173 Identities=29% Similarity=0.443 Sum_probs=146.7
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
...+|+++++++.+.+.+...|+..|+++|.++++.+..+ +++++++|||+|||.+|+++++..+.....+++++|++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 4678999999999999999999999999999999999987 89999999999999999999999988776677999999
Q ss_pred CCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
|+++|+.|+++.++.+.+.. ++++....|+...... ...+++|+|+||+++.+++.+.+.+.+++++++|+||||+
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 99999999999999998765 6788888877654332 2457899999999999999776677889999999999999
Q ss_pred ccccCChhHHHHHHHHhhcCC
Q psy4275 161 LSLMTSLKFFFFFFFLKYYIP 181 (182)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ 181 (182)
|.+... +...+..+.+.+|
T Consensus 247 l~~~~~--~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 247 MIATQG--HQDQSIRIQRMLP 265 (300)
T ss_dssp HHHSTT--HHHHHHHHHTTSC
T ss_pred HhhccC--cHHHHHHHHHhCC
Confidence 997332 3344445555443
No 14
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=7.3e-32 Score=195.42 Aligned_cols=164 Identities=39% Similarity=0.548 Sum_probs=143.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCC
Q psy4275 7 SFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPT 83 (182)
Q Consensus 7 ~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 83 (182)
+|+++++++.+.+.+.+.|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999887642 236789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++|+.|+++.++.+... .++..++|+.........+.++++|+|+||+.+.+.+.. +...+++++++|+||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999998764 677888888876666666667899999999999999887 566788899999999999998
Q ss_pred cCChhHHHHH
Q psy4275 164 MTSLKFFFFF 173 (182)
Q Consensus 164 ~~~~~~~~~~ 173 (182)
+++......+
T Consensus 159 ~~~~~~~~~i 168 (207)
T 2gxq_A 159 MGFEEEVEAL 168 (207)
T ss_dssp TTCHHHHHHH
T ss_pred cchHHHHHHH
Confidence 8776655444
No 15
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=204.04 Aligned_cols=178 Identities=33% Similarity=0.492 Sum_probs=148.5
Q ss_pred CCCccCCccCC----CCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC-CCCe
Q psy4275 1 MEDPIKSFTDL----KLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED-PYGI 75 (182)
Q Consensus 1 ~~~~~~~~~~~----~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~-~~~~ 75 (182)
.|+++.+|+++ ++++.+.+.+.+.|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+... ..+.
T Consensus 20 ~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~ 99 (245)
T 3dkp_A 20 LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF 99 (245)
T ss_dssp CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC
T ss_pred CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc
Confidence 47888999987 899999999999999999999999999999999999999999999999999999887653 2466
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhh-hHHhcCCCcEEEEChHHHHHHHhcCC-CCCCCCccEE
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQ-GKELAKKPHIVIATPGRLADHLDTCN-TFSLNRIKFL 153 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Ilv~T~~~l~~~~~~~~-~~~~~~~~~i 153 (182)
+++|++|+++|+.|+++.++++....++++..+.|+...... .....++++|+|+||+++.++++... .+.+++++++
T Consensus 100 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~l 179 (245)
T 3dkp_A 100 RALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWL 179 (245)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEE
Confidence 899999999999999999999999888888877765543222 12234578999999999999998743 4678899999
Q ss_pred EEeccccccccCChhHHHHHHHHhh
Q psy4275 154 VLDEADRLSLMTSLKFFFFFFFLKY 178 (182)
Q Consensus 154 I~DE~h~~~~~~~~~~~~~~~~~~~ 178 (182)
|+||||++.+++...+...+..+..
T Consensus 180 ViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 180 VVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp EESSHHHHHHHC--CHHHHHHHHHH
T ss_pred EEeChHHhcccccccHHHHHHHHHH
Confidence 9999999999776666666665543
No 16
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=204.54 Aligned_cols=167 Identities=34% Similarity=0.444 Sum_probs=144.4
Q ss_pred CccCCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC----CCeeEEEE
Q psy4275 7 SFTDLK--LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP----YGIFALVL 80 (182)
Q Consensus 7 ~~~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~----~~~~~lil 80 (182)
+|++++ +++.+.+.+...|+..++++|.++++.+..++++++++|||+|||.+++++++..+.... .+.+++|+
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil 132 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLIL 132 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 466666 999999999999999999999999999999999999999999999999999998776522 35689999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
+|+++|+.|+++.++++....+.++..+.|+.........+.++++|+|+||+++.+++.....+.+++++++|+||||+
T Consensus 133 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 133 SPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 99999999999999999999899999999988877766666678999999999999999876667788999999999999
Q ss_pred ccccCChhHHHHH
Q psy4275 161 LSLMTSLKFFFFF 173 (182)
Q Consensus 161 ~~~~~~~~~~~~~ 173 (182)
+.++++...+..+
T Consensus 213 l~~~~~~~~l~~i 225 (262)
T 3ly5_A 213 ILDVGFEEELKQI 225 (262)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HhhhhHHHHHHHH
Confidence 9998866554443
No 17
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=212.92 Aligned_cols=173 Identities=36% Similarity=0.516 Sum_probs=153.4
Q ss_pred CCCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC--------
Q psy4275 1 MEDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-------- 72 (182)
Q Consensus 1 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-------- 72 (182)
.|+++.+|+++++++.+.+.+...|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+....
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 378899999999999999999999999999999999999999999999999999999999999988765432
Q ss_pred ----------CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC
Q psy4275 73 ----------YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC 142 (182)
Q Consensus 73 ----------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~ 142 (182)
.+++++|++|+++|+.|+++.++++....++++..+.|+.........+.++++|+|+||+.+.+++..
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~- 168 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER- 168 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-
Confidence 136799999999999999999999998889999999999887777777778899999999999999987
Q ss_pred CCCCCCCccEEEEeccccccccCChhHHHHHH
Q psy4275 143 NTFSLNRIKFLVLDEADRLSLMTSLKFFFFFF 174 (182)
Q Consensus 143 ~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~ 174 (182)
..+.+++++++|+||+|++.++++......+.
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~ 200 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV 200 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHH
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHH
Confidence 55678889999999999999988666554443
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.98 E-value=8e-31 Score=207.64 Aligned_cols=167 Identities=32% Similarity=0.481 Sum_probs=150.4
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
++..+|+++++++.+.+.+...|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++|
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 45678999999999999999999999999999999999999999999999999999999999988765555779999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
+++|+.|+++.++.+....++++..+.|+.........+..+++|+|+||+.+.+.+.. ......+++++|+||+|++.
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHH
Confidence 99999999999999999889999999999887777667777889999999999999987 55677889999999999999
Q ss_pred ccCChhHH
Q psy4275 163 LMTSLKFF 170 (182)
Q Consensus 163 ~~~~~~~~ 170 (182)
++++...+
T Consensus 193 ~~~~~~~~ 200 (410)
T 2j0s_A 193 NKGFKEQI 200 (410)
T ss_dssp STTTHHHH
T ss_pred hhhhHHHH
Confidence 88865433
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=4.9e-30 Score=202.44 Aligned_cols=164 Identities=32% Similarity=0.466 Sum_probs=145.7
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
...+|+++++++.+.+.+...|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 34689999999999999999999999999999999999999999999999999999999999887765556789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++|+.|+.+.++.+....++++....|+............+++|+|+||+.+.+.+.. ....+.+++++|+||||++.+
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADKMLS 177 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHHHSS
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCchHhhh
Confidence 9999999999999999889999999998877666666667899999999999998876 556688899999999999988
Q ss_pred cCChh
Q psy4275 164 MTSLK 168 (182)
Q Consensus 164 ~~~~~ 168 (182)
.++..
T Consensus 178 ~~~~~ 182 (400)
T 1s2m_A 178 RDFKT 182 (400)
T ss_dssp HHHHH
T ss_pred hchHH
Confidence 65443
No 20
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=6.1e-30 Score=201.19 Aligned_cols=170 Identities=31% Similarity=0.505 Sum_probs=149.1
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
.++..+|+++++++.+.+.+...|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+.....+++++|++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 46678899999999999999999999999999999999999999999999999999999999999887766677999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
|+++|+.|+++.++++....++++..+.|+.........+. +++|+|+||+.+.+.+.. ......+++++|+||+|++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHHh
Confidence 99999999999999999888999999999887654444333 689999999999998877 5566788999999999999
Q ss_pred cccCChhHHHHH
Q psy4275 162 SLMTSLKFFFFF 173 (182)
Q Consensus 162 ~~~~~~~~~~~~ 173 (182)
.++++......+
T Consensus 175 ~~~~~~~~~~~~ 186 (394)
T 1fuu_A 175 LSSGFKEQIYQI 186 (394)
T ss_dssp HHTTCHHHHHHH
T ss_pred hCCCcHHHHHHH
Confidence 988866554443
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=199.98 Aligned_cols=169 Identities=36% Similarity=0.517 Sum_probs=149.2
Q ss_pred CCccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 2 EDPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 2 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++...+|+++++++.+.+.+.++|+..|+++|.++++.+.+++++++++|||+|||.+++++++..+.....+.+++|++
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 115 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLA 115 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEe
Confidence 35568899999999999999999999999999999999999999999999999999999999999887765677999999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
|+++|+.|+.+.++.+....+..+....|+.........+. ++++|+|+||+.+.+.+.. +.....+++++|+||||+
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHH
Confidence 99999999999999999988999998888877655554544 6789999999999999987 556778899999999999
Q ss_pred ccccCChhHHH
Q psy4275 161 LSLMTSLKFFF 171 (182)
Q Consensus 161 ~~~~~~~~~~~ 171 (182)
+.++++...+.
T Consensus 195 ~~~~~~~~~~~ 205 (414)
T 3eiq_A 195 MLSRGFKDQIY 205 (414)
T ss_dssp HHHTTTHHHHH
T ss_pred hhccCcHHHHH
Confidence 98887655443
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=3.2e-29 Score=197.01 Aligned_cols=158 Identities=34% Similarity=0.560 Sum_probs=139.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
.+|+++++++.+.+.+.+.|+..|+|+|.++++.+..++++++++|||+|||.+++++++..+.....+.+++|++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999988776655679999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 86 LAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
|+.|+++.++++.... ++++..+.|+.........+. +.++|+|+||+.+...+.. ....+.+++++|+||||++.+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHHHHTS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHHHHhh
Confidence 9999999999998776 789999999887655554444 3579999999999998877 556688899999999999987
Q ss_pred c
Q psy4275 164 M 164 (182)
Q Consensus 164 ~ 164 (182)
+
T Consensus 167 ~ 167 (391)
T 1xti_A 167 Q 167 (391)
T ss_dssp S
T ss_pred c
Confidence 5
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=4.9e-29 Score=195.82 Aligned_cols=157 Identities=29% Similarity=0.455 Sum_probs=138.1
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
+...+|+++++++.+.+.+.+.|+..|+|+|.++++.+..+ +++++++|||+|||.+++++++..+.....+.+++|+
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 81 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICL 81 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEE
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEE
Confidence 56789999999999999999999999999999999999987 8999999999999999999999988776667799999
Q ss_pred cCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
+|+++|+.|+++.++++....++.+....++..... ...+++|+|+||+.+.+.+.. ....+.+++++|+||||+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhh
Confidence 999999999999999998888888888777654322 134689999999999999877 556788899999999999
Q ss_pred cccc
Q psy4275 161 LSLM 164 (182)
Q Consensus 161 ~~~~ 164 (182)
+.+.
T Consensus 157 ~~~~ 160 (395)
T 3pey_A 157 MLDQ 160 (395)
T ss_dssp HHHS
T ss_pred hcCc
Confidence 9874
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=8.8e-29 Score=195.59 Aligned_cols=166 Identities=30% Similarity=0.445 Sum_probs=141.5
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
..+.+|+++++++.+.+.+.+.|+..|+|+|.++++.+.++ +++++++|||+|||.+++++++..+.....+++++|+
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil 101 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 101 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEE
Confidence 35778999999999999999999999999999999999986 8999999999999999999999988776667799999
Q ss_pred cCCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 81 TPTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 81 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
+|+++|+.|+++.++++.... +.++....++...... ....++|+|+||+.+.+++...+.+.+++++++|+||||
T Consensus 102 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 102 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 999999999999999987765 5777777776654332 234679999999999999977666778899999999999
Q ss_pred cccc-cCChhHHH
Q psy4275 160 RLSL-MTSLKFFF 171 (182)
Q Consensus 160 ~~~~-~~~~~~~~ 171 (182)
++.+ .++.....
T Consensus 179 ~~~~~~~~~~~~~ 191 (412)
T 3fht_A 179 VMIATQGHQDQSI 191 (412)
T ss_dssp HHHSTTTTHHHHH
T ss_pred HHhhcCCcHHHHH
Confidence 9987 44444333
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=2.7e-28 Score=189.88 Aligned_cols=167 Identities=39% Similarity=0.600 Sum_probs=143.9
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC-CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND-EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
-...+|+++++++.+.+.+.+.|+..|+|+|.++++.+.++ +++++.+|||+|||.+++.+++..+... .+.+++|++
T Consensus 3 ~~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~ 81 (367)
T 1hv8_A 3 VEYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILT 81 (367)
T ss_dssp CCCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEEC
T ss_pred cccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEc
Confidence 34578999999999999999999999999999999999887 6999999999999999999988876553 356899999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
|+++|+.|+++.++.+....++++....|+.........+ .+++|+|+||+.+.+.+.. ....+++++++|+||+|++
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~~ 159 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADEM 159 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH-HTCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc-CCCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchHh
Confidence 9999999999999999888888999999888765544443 3789999999999998877 5567888999999999999
Q ss_pred cccCChhHHHH
Q psy4275 162 SLMTSLKFFFF 172 (182)
Q Consensus 162 ~~~~~~~~~~~ 172 (182)
.++++......
T Consensus 160 ~~~~~~~~~~~ 170 (367)
T 1hv8_A 160 LNMGFIKDVEK 170 (367)
T ss_dssp HTTTTHHHHHH
T ss_pred hhhchHHHHHH
Confidence 98886554433
No 26
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=3.8e-28 Score=196.18 Aligned_cols=159 Identities=31% Similarity=0.486 Sum_probs=137.4
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
.+.+|+++++++.+.+.+...|+..|+|+|.++++.+..+ +++++++|||+|||.+|+++++..+.....+++++|++
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~ 169 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEEC
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEe
Confidence 3578999999999999999999999999999999999986 89999999999999999999999887766667999999
Q ss_pred CCHHHHHHHHHHHHHhhccC-CceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLGKVM-NLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
|+++|+.|+++.++.+.+.. +..+....++...... ....++|+|+||+.+.+++.+.+.+.++++++||+||+|+
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHH
Confidence 99999999999999987764 5677777666543322 1346789999999999999876777889999999999999
Q ss_pred ccccC
Q psy4275 161 LSLMT 165 (182)
Q Consensus 161 ~~~~~ 165 (182)
+.+..
T Consensus 247 ~~~~~ 251 (479)
T 3fmp_B 247 MIATQ 251 (479)
T ss_dssp HHTST
T ss_pred HhhcC
Confidence 98743
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.6e-27 Score=183.68 Aligned_cols=153 Identities=35% Similarity=0.544 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGD 92 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 92 (182)
+++++.+.+.++|+..|+|+|.++++.+.+++++++.+|||+|||.+++.+++.. +.+++|++|+++|+.|+++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999888774 5689999999999999999
Q ss_pred HHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHH
Q psy4275 93 QFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFF 172 (182)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~ 172 (182)
.++++....+.++..++|+.........+ .+++|+|+||+.+.+.+.. ....+.+++++|+||+|++.++++......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~ 152 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDIKI 152 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHH-TTCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhc-CCCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHHHH
Confidence 99999988899999999888765554444 3589999999999998876 555678899999999999998887654443
Q ss_pred H
Q psy4275 173 F 173 (182)
Q Consensus 173 ~ 173 (182)
+
T Consensus 153 ~ 153 (337)
T 2z0m_A 153 I 153 (337)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=7.5e-28 Score=198.63 Aligned_cols=171 Identities=31% Similarity=0.434 Sum_probs=139.8
Q ss_pred CCccCCC----CCHHHHHHHHHCCCCCChHHHHhhhhhhh--CCCcEEEECCCCChHHHHHHHHHHHhhccCC----CCe
Q psy4275 6 KSFTDLK----LNPWLIRQCQTIGVKTPTEIQKAIIPHVL--NDEDCIGCAKTGSGKTLAFALPILQKWCEDP----YGI 75 (182)
Q Consensus 6 ~~~~~~~----l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~----~~~ 75 (182)
.+|+++. +++++.+++..+|+..|+|+|.++++.+. .++++++++|||+|||.+++++++..+.... .+.
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 3455553 99999999999999999999999999998 6789999999999999999999998876542 346
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhcc----CCceEEEEEcCCchhhhhHHhc-CCCcEEEEChHHHHHHHhcCCCCCCCCc
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKV----MNLRVSIITGGMDMVDQGKELA-KKPHIVIATPGRLADHLDTCNTFSLNRI 150 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~ 150 (182)
+++|++|+++|+.|+++.++.+... ....+....|+.........+. .+++|+|+||+.+.+++.......++++
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 8999999999999999999987632 3466777788776555444443 4789999999999998876434457889
Q ss_pred cEEEEeccccccccCChhHHHHHHHH
Q psy4275 151 KFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 151 ~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
+++|+||||++.++++......+...
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~ 202 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGI 202 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHH
Confidence 99999999999999977766655544
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=3.6e-27 Score=193.83 Aligned_cols=164 Identities=32% Similarity=0.444 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhh--CCCcEEEECCCCChHHHHHHHHHHHhhccCC----CCeeEEEEcCCHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVL--NDEDCIGCAKTGSGKTLAFALPILQKWCEDP----YGIFALVLTPTREL 86 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~l 86 (182)
+++++.+.+.+.|+..|+|+|.++++.+. .++++++++|||+|||.+++++++..+.... .+.+++|++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 99999999999999999999999999998 5789999999999999999999998876643 24589999999999
Q ss_pred HHHHHHHHHHhhcc----CCceEEEEEcCCchhhhhHHh-cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 87 AYQIGDQFLVLGKV----MNLRVSIITGGMDMVDQGKEL-AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 87 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
+.|+++.++.+... ....+..+.|+.........+ ..+++|+|+||+.+.+++.+.....+++++++|+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999987543 245677777777655444443 3478999999999999887643345778999999999999
Q ss_pred cccCChhHHHHHHHH
Q psy4275 162 SLMTSLKFFFFFFFL 176 (182)
Q Consensus 162 ~~~~~~~~~~~~~~~ 176 (182)
.++++......+...
T Consensus 239 ~~~~f~~~~~~i~~~ 253 (563)
T 3i5x_A 239 LEIGFRDDLETISGI 253 (563)
T ss_dssp TSTTTHHHHHHHHHH
T ss_pred hccchHHHHHHHHHh
Confidence 999877766655444
No 30
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=1.7e-26 Score=194.76 Aligned_cols=162 Identities=22% Similarity=0.281 Sum_probs=136.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
.+|+++++++++.+.+.+.|+..++|+|.++++. +.+++++++++|||+|||.++.++++..+..+ +.+++|++|++
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~r 78 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLK 78 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSG
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcH
Confidence 3689999999999999999999999999999998 78899999999999999999999998877643 56999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 85 ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 85 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+|+.|+++.++.+.+ .++++..++|+...... ..++++|+|+||+++...++. ....++++++||+||+|++.++
T Consensus 79 aLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 79 ALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp GGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCT
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCCC
Confidence 999999999865544 48999999997654332 234789999999999998887 4445788999999999999986
Q ss_pred CChhHHHHHH
Q psy4275 165 TSLKFFFFFF 174 (182)
Q Consensus 165 ~~~~~~~~~~ 174 (182)
.....++.+.
T Consensus 154 ~r~~~~~~ll 163 (720)
T 2zj8_A 154 DRGATLEVIL 163 (720)
T ss_dssp TTHHHHHHHH
T ss_pred cccHHHHHHH
Confidence 6555444443
No 31
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.94 E-value=5.3e-26 Score=191.62 Aligned_cols=162 Identities=25% Similarity=0.271 Sum_probs=136.4
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH-VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
..+|+++++++++.+.+.+.|+..++|+|.++++. +.+++++++++|||+|||+++.+++++.+..+ +.+++|++|+
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~ 84 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPL 84 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCc
Confidence 45799999999999999999999999999999999 77899999999999999999999999877643 5699999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
++|+.|+++.++.+ ...++++...+|+...... ..++++|+|+||+++...++. ....++++++||+||+|++.+
T Consensus 85 r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~ 159 (715)
T 2va8_A 85 RALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYLND 159 (715)
T ss_dssp HHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGGGC
T ss_pred HHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhhcCC
Confidence 99999999888644 4458899999987764432 124789999999999999887 444578899999999999987
Q ss_pred cCChhHHHHH
Q psy4275 164 MTSLKFFFFF 173 (182)
Q Consensus 164 ~~~~~~~~~~ 173 (182)
+.....+..+
T Consensus 160 ~~~~~~l~~i 169 (715)
T 2va8_A 160 PERGPVVESV 169 (715)
T ss_dssp TTTHHHHHHH
T ss_pred cccchHHHHH
Confidence 6665544443
No 32
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=1.9e-26 Score=194.09 Aligned_cols=159 Identities=18% Similarity=0.248 Sum_probs=132.3
Q ss_pred CccCCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 7 SFTDLK--LNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 7 ~~~~~~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
+|++++ +++.+.+.+.+.|+..++|+|.++++.+.+++++++++|||+|||+++.++++..+.+ +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 688888 9999999999999999999999999999999999999999999999999999987664 56899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 85 ELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 85 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+|+.|+++.++.+ ...|+++...+|+...... ..++++|+|+||+++..+++. ....+++++++|+||+|++.++
T Consensus 79 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~~~ 153 (702)
T 2p6r_A 79 ALAGEKYESFKKW-EKIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLDSE 153 (702)
T ss_dssp HHHHHHHHHHTTT-TTTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGGCT
T ss_pred HHHHHHHHHHHHH-HhcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecCCC
Confidence 9999999988644 3458899999998764332 234789999999999999887 4445778999999999999987
Q ss_pred CChhHHHHH
Q psy4275 165 TSLKFFFFF 173 (182)
Q Consensus 165 ~~~~~~~~~ 173 (182)
+.....+.+
T Consensus 154 ~r~~~~~~l 162 (702)
T 2p6r_A 154 KRGATLEIL 162 (702)
T ss_dssp TTHHHHHHH
T ss_pred CcccHHHHH
Confidence 655544443
No 33
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.93 E-value=4.1e-26 Score=185.65 Aligned_cols=155 Identities=27% Similarity=0.319 Sum_probs=111.2
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCC--CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLND--EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+..++..++++.+.+.+.+.|+..|+++|.++++.+.++ +++++++|||+|||.+++++++..+.....+++++|++|
T Consensus 118 l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P 197 (508)
T 3fho_A 118 XXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAP 197 (508)
T ss_dssp ---------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECS
T ss_pred cccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEEC
Confidence 444566678888999998889999999999999999997 899999999999999999999998877666779999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
+++|+.|+.+.++.+....+..+....++.... ....+++|+|+||+.+.+.+.. +...++++++||+||||++.
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhc
Confidence 999999999999999887777766555544321 2234789999999999998877 55678889999999999998
Q ss_pred cc
Q psy4275 163 LM 164 (182)
Q Consensus 163 ~~ 164 (182)
+.
T Consensus 273 ~~ 274 (508)
T 3fho_A 273 DQ 274 (508)
T ss_dssp TC
T ss_pred cc
Confidence 73
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.93 E-value=2.8e-25 Score=186.57 Aligned_cols=149 Identities=19% Similarity=0.190 Sum_probs=123.7
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC--CeeEEEEcCCHHHHHHHHHHHH
Q psy4275 18 IRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY--GIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 18 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~ 95 (182)
.+.+..+|+..|+|+|.++++.+..++++++++|||+|||++++++++..+...+. +++++|++|+++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999987765432 3689999999999999999999
Q ss_pred HhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 96 VLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
++....++++..++|+.........+..+++|+|+||+.+.+.+.......+.+++++|+||||++.+...
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~ 153 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP 153 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc
Confidence 99988889999999988665555555567999999999999999873332678899999999999986653
No 35
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=4.1e-26 Score=181.10 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=116.7
Q ss_pred HHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH
Q psy4275 16 WLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 16 ~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 94 (182)
++.+.+.+ +++ +|+|+|.++++.+.+++++++++|||+|||.+++.+++..... +++++|++|+++|+.|+++.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC---CCEEEEEECCHHHHHHHHHHH
Confidence 44555655 355 8999999999999999999999999999999988887776533 679999999999999999999
Q ss_pred HHhhccCCceEEEEEcCCchh---hhhHHhcC-CCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 95 LVLGKVMNLRVSIITGGMDMV---DQGKELAK-KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+.+.. .++++..++|+.... .....+.+ .++|+|+||+.+.+.+.. +...+++++|+||||++..+
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHC
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhc
Confidence 99888 889999999998763 33334444 489999999999888765 34668999999999987653
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.93 E-value=3.2e-25 Score=181.36 Aligned_cols=142 Identities=19% Similarity=0.201 Sum_probs=118.7
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC--CeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY--GIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
..+|+|+|.++++.+.+++++++++|||+|||.+++++++..+...+. +.+++|++|+++|+.|+.+.++.+....++
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 357999999999999999999999999999999999999888776542 568999999999999999999999998899
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCCh
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
++..++|+.........+..+++|+|+||+.+.+.+.......+.+++++|+||||++.+++..
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~ 148 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPY 148 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHH
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchH
Confidence 9999999887665555556678999999999999998733337889999999999999987753
No 37
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.93 E-value=3.8e-25 Score=180.63 Aligned_cols=140 Identities=19% Similarity=0.202 Sum_probs=122.9
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC--CeeEEEEcCCHHHHHHHHHHHHHhhccCCce
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY--GIFALVLTPTRELAYQIGDQFLVLGKVMNLR 104 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 104 (182)
..|+|+|.++++.+.+++++++++|||+|||.+++++++..+...+. +.+++|++|+++|+.|+.+.+++++...+++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcE
Confidence 37999999999999999999999999999999999999988776542 5689999999999999999999999988999
Q ss_pred EEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 105 VSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
+..++|+.........+.++++|+|+||+.+.+.+.......+.+++++|+||||++.+.+.
T Consensus 83 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~ 144 (555)
T 3tbk_A 83 IASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP 144 (555)
T ss_dssp EEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH
T ss_pred EEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch
Confidence 99999998766555556667999999999999999873333688899999999999988764
No 38
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.93 E-value=1.5e-25 Score=182.78 Aligned_cols=166 Identities=20% Similarity=0.195 Sum_probs=130.1
Q ss_pred cCCccCCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 5 IKSFTDLKLNPWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+.+|+++++++.+.+.+.+ +|+..++|+|.++++.+.+++++++.+|||+|||.++.++++.. ++.++|++|+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~ 74 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPL 74 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSC
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECCh
Confidence 4689999999999999998 89999999999999999999999999999999999999888754 3579999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhH----HhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccc
Q psy4275 84 RELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGK----ELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEAD 159 (182)
Q Consensus 84 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h 159 (182)
++|+.|+.+.++.+ ++++..++++........ ...+..+|+++||+.+...... ..+...+++++|+||||
T Consensus 75 ~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSGG
T ss_pred HHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCcc
Confidence 99999998888764 778888888766543322 2235689999999998532111 11234678999999999
Q ss_pred cccccC--ChhHHHHHHHHhhcCC
Q psy4275 160 RLSLMT--SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 160 ~~~~~~--~~~~~~~~~~~~~~~~ 181 (182)
++.+++ +......+..++..+|
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~~ 173 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRFP 173 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHCT
T ss_pred ccCcCCCccHHHHHHHHHHHHhCC
Confidence 999887 4444444444444443
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.93 E-value=5.9e-25 Score=181.43 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=131.1
Q ss_pred cCCcc--CCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 5 IKSFT--DLKLNPWLIRQCQT-IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 5 ~~~~~--~~~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
...|+ ++++++.+.+.+.+ +|+..++|+|.++++.+.+|+++++.+|||+|||++|+++++.. .++++|++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVis 91 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVIC 91 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEEC
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEe
Confidence 34554 58899999999998 79999999999999999999999999999999999999998763 45899999
Q ss_pred CCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH------hcCCCcEEEEChHHHH------HHHhcCCCCCCCC
Q psy4275 82 PTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE------LAKKPHIVIATPGRLA------DHLDTCNTFSLNR 149 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Ilv~T~~~l~------~~~~~~~~~~~~~ 149 (182)
|+++|+.|+.+.++.+ ++++..++|+......... ....++|+|+||+++. +.++. .....+
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~ 165 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARR 165 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTC
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccC
Confidence 9999999999888876 7888888888765443322 2457899999999874 22222 224667
Q ss_pred ccEEEEeccccccccC--ChhHHHHHHHHhhcCC
Q psy4275 150 IKFLVLDEADRLSLMT--SLKFFFFFFFLKYYIP 181 (182)
Q Consensus 150 ~~~iI~DE~h~~~~~~--~~~~~~~~~~~~~~~~ 181 (182)
++++|+||||++.+|+ +......+..+++.+|
T Consensus 166 i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~ 199 (591)
T 2v1x_A 166 FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFP 199 (591)
T ss_dssp EEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCT
T ss_pred CcEEEEECcccccccccccHHHHHHHHHHHHhCC
Confidence 8999999999999887 5555555555555443
No 40
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=4.7e-25 Score=160.21 Aligned_cols=145 Identities=20% Similarity=0.155 Sum_probs=107.4
Q ss_pred CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCCHHHHHH-HHHHHHHhhc
Q psy4275 24 IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPTRELAYQ-IGDQFLVLGK 99 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l~~q-~~~~~~~~~~ 99 (182)
.....++++|.++++.+.+++++++.+|||+|||.+++.++...+... ..+.+++|++|+++|++| +.+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999999999999998888765432 225689999999999999 7788888766
Q ss_pred cCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC-----CCCCCccEEEEeccccccccCChhH
Q psy4275 100 VMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT-----FSLNRIKFLVLDEADRLSLMTSLKF 169 (182)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-----~~~~~~~~iI~DE~h~~~~~~~~~~ 169 (182)
. ++++..+.|+...........++++|+|+||+.+.+.+..... ..+.+++++|+||||++.+.+....
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~ 182 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNN 182 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHH
Confidence 5 6788888887665444444445789999999999998876432 4567889999999999987654443
No 41
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.92 E-value=1.7e-24 Score=184.33 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=119.4
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC--CeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY--GIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
..|+..|+|+|.++++.+.+++++++++|||+|||.+++++++..+...+. +++++|++|+++|+.|+.+.+++++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 346778999999999999999999999999999999999999988776542 568999999999999999999999988
Q ss_pred CCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 101 MNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
.++++..++|+.........+.++++|+|+||+.+.+.++......+.++++||+||||++.+.+.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~ 388 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc
Confidence 899999999998766655666678999999999999999873333788899999999999998764
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=3.2e-24 Score=193.06 Aligned_cols=162 Identities=22% Similarity=0.233 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIG 91 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 91 (182)
+.....+.+...++..++|+|.++++.+.+ ++|+++++|||+|||+++.++++..+.+++ +.+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 345566666666788999999999999876 678999999999999999999999887654 458999999999999998
Q ss_pred HHHHH-hhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCC-CCCCccEEEEeccccccccCChhH
Q psy4275 92 DQFLV-LGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTF-SLNRIKFLVLDEADRLSLMTSLKF 169 (182)
Q Consensus 92 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~-~~~~~~~iI~DE~h~~~~~~~~~~ 169 (182)
+.+++ +.+..|.+|..++|+...+.. ...+++|+|+||+++..+++++... .+++++++|+||+|.+.+..+...
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~l 1066 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVL 1066 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccH
Confidence 88865 556689999999998764332 2346799999999998888775432 467899999999999988766555
Q ss_pred HHHHHHHhh
Q psy4275 170 FFFFFFLKY 178 (182)
Q Consensus 170 ~~~~~~~~~ 178 (182)
...+.++++
T Consensus 1067 e~il~rl~~ 1075 (1724)
T 4f92_B 1067 EVICSRMRY 1075 (1724)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.91 E-value=6.3e-24 Score=183.29 Aligned_cols=144 Identities=19% Similarity=0.194 Sum_probs=118.6
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC--CeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY--GIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
..+...|+|+|.++++.+.+|+++++++|||+|||.+++++++..+...+. +.+++|++|+++|+.|+.+.+++++..
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345678999999999999999999999999999999999999888766532 568999999999999999999999988
Q ss_pred CCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 101 MNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
.++++..++|+.........+..+++|+|+||+.+.+.+.......+++++++|+||||++.+.+.
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~ 388 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc
Confidence 899999999998766555555667899999999999999874333678899999999999998764
No 44
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.1e-24 Score=185.90 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=126.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 6 KSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 6 ~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
..|+.++++..+...+...+...++|+|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHH
Confidence 45666777777666666666668999999999999999999999999999999999999988755 569999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccC
Q psy4275 86 LAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 86 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
|+.|+++.++..+. .++.++|+... ..+++|+|+||+.+.+++.. ....++++++||+||||++.+++
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTSHH
T ss_pred HHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccccc
Confidence 99999999988765 57778887752 34689999999999999877 44557789999999999998876
Q ss_pred ChhHHHH
Q psy4275 166 SLKFFFF 172 (182)
Q Consensus 166 ~~~~~~~ 172 (182)
+...+..
T Consensus 307 rg~~~e~ 313 (1108)
T 3l9o_A 307 RGVVWEE 313 (1108)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 5544443
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.90 E-value=2.5e-23 Score=187.25 Aligned_cols=150 Identities=20% Similarity=0.235 Sum_probs=121.9
Q ss_pred CCCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccC--------CCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 25 GVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCED--------PYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~--------~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
|+..++++|.++++.+.. ++|+++++|||+|||.++.++++..+.+. ..+.+++|++|+++|+.|..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 688999999999998765 88999999999999999999999887642 236689999999999999999999
Q ss_pred HhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCC-CCCCCccEEEEeccccccccCChhHHHHHH
Q psy4275 96 VLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNT-FSLNRIKFLVLDEADRLSLMTSLKFFFFFF 174 (182)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~~iI~DE~h~~~~~~~~~~~~~~~ 174 (182)
+.+...|++|..++|+....... ..+++|+|+|||++..++++... ..+++++++|+||+|.+.+..+......+.
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~ 232 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVA 232 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHH
Confidence 98888999999999988654321 34689999999999777766332 246789999999999887754434444455
Q ss_pred HHh
Q psy4275 175 FLK 177 (182)
Q Consensus 175 ~~~ 177 (182)
+++
T Consensus 233 rl~ 235 (1724)
T 4f92_B 233 RAI 235 (1724)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.89 E-value=1.5e-22 Score=176.59 Aligned_cols=133 Identities=19% Similarity=0.200 Sum_probs=113.2
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
..|+ +|+|+|.++++.+.+|+++++++|||+|||.+++.+++..+.. +.+++|++|+++|+.|+++.++.+. ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~---~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK---GKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT---TCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 3566 7999999999999999999999999999999888887776633 6799999999999999999999977 678
Q ss_pred ceEEEEEcCCch---hhhhHHhcC-CCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 103 LRVSIITGGMDM---VDQGKELAK-KPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 103 ~~~~~~~~~~~~---~~~~~~~~~-~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
+++..++|+.+. ......+.+ .++|+|+||+.+.+++.. +.+++++++|+||||++..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTT
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCcccc
Confidence 999999999876 334444544 499999999999888764 4567899999999988765
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=7.8e-22 Score=157.94 Aligned_cols=134 Identities=25% Similarity=0.354 Sum_probs=112.3
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.|+|+|.++++.+.++ ++++.+|||+|||.+++.++...+.. .+.+++|++|+++|+.|+.+.++++....+.++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6999999999999988 99999999999999999888877652 25689999999999999999999887544568888
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
++|+....... ...++++|+|+||+.+...+.. ..+...+++++|+||||++.+...
T Consensus 86 ~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~ 142 (494)
T 1wp9_A 86 LTGEKSPEERS-KAWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYA 142 (494)
T ss_dssp ECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCH
T ss_pred eeCCcchhhhh-hhccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCc
Confidence 88887655433 3345789999999999998876 556778899999999999986543
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=2.9e-22 Score=174.53 Aligned_cols=135 Identities=24% Similarity=0.306 Sum_probs=114.4
Q ss_pred HHHH-HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 19 RQCQ-TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 19 ~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
+.+. .+|+. | ++|.++++.+.+|+++++++|||+|||. +.++++..+... +++++|++|+++|+.|+++.++.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 4443 47888 9 9999999999999999999999999998 677777666543 678999999999999999999999
Q ss_pred hccCCc----eEEEEEcCCchhhh---hHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 98 GKVMNL----RVSIITGGMDMVDQ---GKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 98 ~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
....++ ++..++|+.+...+ ...+.+ ++|+|+||+.+.+++.. +++++++|+||||+|.++
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l~~lViDEah~~l~~ 190 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHFDFIFVDDVDAILKA 190 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCCSEEEESCHHHHHTS
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccCCEEEEeChhhhhhc
Confidence 988888 89999998876553 233344 99999999999987765 568999999999999984
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.88 E-value=6.5e-22 Score=165.93 Aligned_cols=134 Identities=25% Similarity=0.246 Sum_probs=114.3
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
..|+ .|+|.|..+++.+..|+ +.+++||+|||+++.++++..... +..++|++|+++||.|.++++..+.+.+|
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5788 99999999999999988 999999999999999999854443 55899999999999999999999999999
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcC-----CCCCCCCccEEEEecccccc-cc
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTC-----NTFSLNRIKFLVLDEADRLS-LM 164 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~-----~~~~~~~~~~iI~DE~h~~~-~~ 164 (182)
+++.++.|+.+...+.. ..+++|+|+||+.+ .++++.. ....++.+.++|+||||.|+ +.
T Consensus 153 l~v~~i~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDe 219 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDE 219 (844)
T ss_dssp CCEEECCTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTT
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhc
Confidence 99999999887544333 34689999999999 6776653 13467889999999999998 54
No 50
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.88 E-value=7.5e-23 Score=171.88 Aligned_cols=139 Identities=20% Similarity=0.168 Sum_probs=112.0
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCHHHHHHH-HHHHHHhhccCC
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTRELAYQI-GDQFLVLGKVMN 102 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~-~~~~~~~~~~~~ 102 (182)
..|+|+|.++++.+.+++++++.+|||+|||+++++++...+.... .+.+++|++|+++|+.|+ .+.+++++.. +
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~ 84 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W 84 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C
Confidence 3799999999999999999999999999999999999988765432 236899999999999999 9999998775 5
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhc-----CCCCCCCCccEEEEeccccccccCC
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDT-----CNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~-----~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
+++..++|+.........+.++++|+|+||+.+.+.+.. ...+.+.++++||+||||++.....
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~ 153 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV 153 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBS
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccch
Confidence 889999988776555555567899999999999988842 2445678899999999999976553
No 51
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.87 E-value=1e-21 Score=165.96 Aligned_cols=139 Identities=22% Similarity=0.290 Sum_probs=114.8
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhCC------CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHH
Q psy4275 15 PWLIRQCQTIGVKTPTEIQKAIIPHVLND------EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAY 88 (182)
Q Consensus 15 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 88 (182)
+.+.+.+..+++ +++++|.++++.+.++ .+.++++|||+|||.+++++++..+.+ +.++++++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 455566678888 9999999999988764 589999999999999999999987765 568999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCchhhhhHH---h-cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 89 QIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE---L-AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 89 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
|+++.++++....++++..++|+......... + .+.++|+|+||+.+.+ ...+++++++|+||+|++..
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g~ 504 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFGV 504 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhhH
Confidence 99999999998889999999998876543322 2 2368999999987743 23577899999999999754
No 52
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.1e-21 Score=170.00 Aligned_cols=135 Identities=18% Similarity=0.169 Sum_probs=113.3
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
.+++ +++|+|.++++.+.+++++++++|||+|||+++.+++...+.. +.+++|++|+++|++|+++.++..+.
T Consensus 82 ~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC---
Confidence 3455 5999999999999999999999999999999998888876644 56999999999999999999888765
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHHH
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFFF 173 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~~ 173 (182)
+++.++|+.... .+++|+|+||+.+.+++.+ ....++++++||+||+|++.+++....+..+
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~i 216 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEET 216 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHH
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHH
Confidence 677888877532 3678999999999988876 4456788999999999999988765555443
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.87 E-value=3.2e-22 Score=151.41 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=102.4
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.++++|.++++.+.++++.++++|||+|||.+++.++...+... ..+++|++|+++|++|+.+.++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999988888899999999999999977776655432 3489999999999999999999987766677777
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccccc
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~ 164 (182)
+.++..... ....+.+|+|+||+.+.... ....++++++|+||||++.+.
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~~ 240 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATGK 240 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCHH
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCcc
Confidence 777664332 22357899999999874432 224667899999999999854
No 54
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.85 E-value=4.3e-21 Score=160.79 Aligned_cols=133 Identities=23% Similarity=0.179 Sum_probs=113.4
Q ss_pred CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 24 IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.|. +|+|.|..+++.+..|+ +.+++||+|||+++.++++..... +.+++|++||+.||.|.++++..+.+.+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 464 89999999999999987 999999999999999999865544 558999999999999999999999999999
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEecccccccc
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~ 164 (182)
++.++.|+.+.... ....+++|+|+||+.+ .++++..- ...++++.++|+||+|.|+.+
T Consensus 145 ~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD 209 (853)
T 2fsf_A 145 TVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILID 209 (853)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTT
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHh
Confidence 99999998875433 3334689999999999 78887632 246788999999999999943
No 55
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.85 E-value=3.5e-21 Score=166.75 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=110.8
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
+++|+|.++++.+.+++++++++|||+|||+++.+++...... +.+++|++|+++|+.|+++.++..+. ++++..
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~ 113 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--DVNIGL 113 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----CCEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEE
Confidence 6999999999999999999999999999999988887776544 56899999999999999998888654 578888
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHHHH
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFFFF 172 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~~~ 172 (182)
++|+... ..+.+|+|+||+.+.+.+.. ....++++++||+||+|++.++++...+..
T Consensus 114 l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ 170 (997)
T 4a4z_A 114 ITGDVQI-------NPDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEE 170 (997)
T ss_dssp ECSSCEE-------CTTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHH
T ss_pred EeCCCcc-------CCCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHH
Confidence 8887753 24579999999999998876 445678899999999999999876554443
No 56
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.85 E-value=6.2e-21 Score=155.02 Aligned_cols=128 Identities=20% Similarity=0.163 Sum_probs=105.7
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEE
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVS 106 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 106 (182)
.+++|+|.++++.+.++++.++++|||+|||.+++.++...+... +.+++|++|+++|+.|+.+.++++....+.++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 379999999999999989999999999999999988877765442 349999999999999999999888666667888
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
.+.|+...... ...+.+|+|+||+.+... ....++++++||+||+|++.+
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~ 239 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG 239 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc
Confidence 88887655443 456789999999976432 223567899999999999887
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.85 E-value=1.2e-20 Score=158.48 Aligned_cols=134 Identities=20% Similarity=0.217 Sum_probs=113.9
Q ss_pred HCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC
Q psy4275 23 TIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN 102 (182)
Q Consensus 23 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 102 (182)
..|+ +|+|.|..+++.+..|+ +.+++||+|||+++.++++..... +..++|++|++.||.|.++++..+.+.+|
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4577 99999999999999887 999999999999999999755444 45799999999999999999999999999
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCCCccEEEEecccccccc
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLM 164 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~ 164 (182)
++++++.|+.+...... ..+++|+++||+.+ .++++..- ...++.+.++|+||+|.|+.+
T Consensus 181 Lsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiD 246 (922)
T 1nkt_A 181 LQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILID 246 (922)
T ss_dssp CCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTT
T ss_pred CeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHh
Confidence 99999999887543333 33689999999999 78887631 356778999999999999843
No 58
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.83 E-value=2.8e-20 Score=149.81 Aligned_cols=118 Identities=21% Similarity=0.232 Sum_probs=99.8
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce-EE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR-VS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~~ 106 (182)
.|+|+|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ +.+ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6999999999999998899999999999999998887765 458999999999999998888773 777 88
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
.++|+.. ...+|+|+|++.+....... .+++++||+||+|++.+..+..
T Consensus 163 ~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~ 211 (472)
T 2fwr_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ 211 (472)
T ss_dssp EBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH
T ss_pred EECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH
Confidence 8887664 25789999999998766541 2458999999999999887754
No 59
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=5.7e-20 Score=135.84 Aligned_cols=118 Identities=21% Similarity=0.232 Sum_probs=97.2
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCce-EE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLR-VS 106 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~~ 106 (182)
.++++|.+++..+.++++.++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ +.+ +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 7899999999999998889999999999999988777654 457999999999999998887773 677 77
Q ss_pred EEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChh
Q psy4275 107 IITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLK 168 (182)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~ 168 (182)
.+.|+.. ...+|+|+|++.+....... ..+++++|+||+|++.+..+..
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~~ 211 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ 211 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHHH
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHHH
Confidence 7777653 25689999999987766541 2458899999999998776544
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.82 E-value=2.6e-19 Score=157.06 Aligned_cols=144 Identities=24% Similarity=0.197 Sum_probs=113.0
Q ss_pred CCCCCHHHHHHHH-HCCCCCChHHHHhhhhhhhC----CC--cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 10 DLKLNPWLIRQCQ-TIGVKTPTEIQKAIIPHVLN----DE--DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 10 ~~~l~~~i~~~l~-~~~~~~~~~~Q~~~~~~~~~----~~--~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.++.+....+.+. .+++ +++|+|.++++.+.+ ++ +.+++++||+|||.+++.++...... +.+++|++|
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvP 660 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVP 660 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECS
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEec
Confidence 3456666666664 4566 579999999998876 55 89999999999999998887776544 569999999
Q ss_pred CHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH---hc-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecc
Q psy4275 83 TRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE---LA-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEA 158 (182)
Q Consensus 83 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~ 158 (182)
+++|+.|+++.+++.+...++++..+++..+....... +. +.++|+|+||+.+. +...+++++++|+||+
T Consensus 661 t~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiDEa 734 (1151)
T 2eyq_A 661 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVDEE 734 (1151)
T ss_dssp SHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEESG
T ss_pred hHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEech
Confidence 99999999999999888888999998876654433222 22 36899999998652 2345788999999999
Q ss_pred ccccc
Q psy4275 159 DRLSL 163 (182)
Q Consensus 159 h~~~~ 163 (182)
|++..
T Consensus 735 H~~g~ 739 (1151)
T 2eyq_A 735 HRFGV 739 (1151)
T ss_dssp GGSCH
T ss_pred HhcCh
Confidence 99643
No 61
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.82 E-value=1.1e-19 Score=152.57 Aligned_cols=134 Identities=22% Similarity=0.219 Sum_probs=113.9
Q ss_pred CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 24 IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.|+ .|++.|..+++.+..|+ +.++.||+|||+++.++++..... +.+++|++||+.||.|.++++..+.+.+|+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 577 89999999999999987 999999999999999999654444 457999999999999999999999999999
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHH-HHHHhcCC-----CCCCC---CccEEEEeccccccccC
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRL-ADHLDTCN-----TFSLN---RIKFLVLDEADRLSLMT 165 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l-~~~~~~~~-----~~~~~---~~~~iI~DE~h~~~~~~ 165 (182)
+++++.|+.+...... ..+++|+|+||+.+ .++++... ...++ .+.++|+||+|.|+.+.
T Consensus 150 sv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe 218 (997)
T 2ipc_A 150 SVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE 218 (997)
T ss_dssp CEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS
T ss_pred eEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC
Confidence 9999999887543333 34689999999999 88887742 24567 89999999999998443
No 62
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=133.44 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=97.6
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCC--CeeEEEEcCCHHHHHHHHHHHHHhhc-cCC
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPY--GIFALVLTPTRELAYQIGDQFLVLGK-VMN 102 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~-~~~ 102 (182)
...++++|.++++.+.+|++++++||||+|||+.+..+++......+. +.++++++|+++++.|+.+.+..... ..+
T Consensus 59 ~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 59 LLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred cCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 346899999999999999999999999999999888888876655433 45899999999999999877765433 334
Q ss_pred ceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 103 LRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
..++...... ......+++|+|+||+.+.+.+.. .+++++++|+||+|++
T Consensus 139 ~~~g~~~~~~-----~~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 139 KSCGYSVRFE-----SILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHER 188 (235)
T ss_dssp SSEEEEETTE-----EECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSC
T ss_pred ceEEEeechh-----hccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccC
Confidence 4443322111 111124678999999999999876 3788999999999985
No 63
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.75 E-value=4.8e-18 Score=139.45 Aligned_cols=130 Identities=22% Similarity=0.079 Sum_probs=100.9
Q ss_pred CChHHHHhhhhhh----hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHV----LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~----~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
+++|+|.+++..+ ..++++++++|||+|||.+++++++.. +.+++|++||++|+.|+.+.++.+.+..++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 6899999977654 458999999999999999999999882 569999999999999999999988877788
Q ss_pred eEEEEEcCCch---------------------------------hhh------------------hHHhcCCCcEEEECh
Q psy4275 104 RVSIITGGMDM---------------------------------VDQ------------------GKELAKKPHIVIATP 132 (182)
Q Consensus 104 ~~~~~~~~~~~---------------------------------~~~------------------~~~~~~~~~Ilv~T~ 132 (182)
++..+.|.... +.. .+.....++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88887763321 000 122234679999999
Q ss_pred HHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 133 GRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
..+.+...+...........+||||||++.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9998875432211223567899999999998
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.73 E-value=2.4e-18 Score=142.16 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=74.0
Q ss_pred CChHHHHhhhhhhhC-----CCcEEEECCCCChHHHHHHHHHHHhhccCC-------CCeeEEEEcCCHHHHHHHH-HHH
Q psy4275 28 TPTEIQKAIIPHVLN-----DEDCIGCAKTGSGKTLAFALPILQKWCEDP-------YGIFALVLTPTRELAYQIG-DQF 94 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-------~~~~~lil~p~~~l~~q~~-~~~ 94 (182)
.++|+|.++++.+.. +++++++++||+|||.+++..+.. +.... .+.+++|++|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~-l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWK-LWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHH-HHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHH-HHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998765 467899999999999996554444 33332 4679999999999999987 655
Q ss_pred HHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcC---CCCCCCCccEEEEeccccccccC
Q psy4275 95 LVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTC---NTFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~---~~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
+.+ +..+..+.++ ....+.+|+|+||+.+....... ..+...++++||+||||++....
T Consensus 257 ~~~----~~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~ 318 (590)
T 3h1t_A 257 TPF----GDARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD 318 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------
T ss_pred Hhc----chhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc
Confidence 544 3344333322 22357799999999998765421 22356678999999999998753
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.73 E-value=3.2e-18 Score=141.83 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=90.7
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
.++++|+++++.+.+++++++++|||+|||.++.+++++. +.+++|++|+++|+.|+++.+.+.. +.++..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 4566777777777788999999999999999998888763 5589999999999999987665543 455666
Q ss_pred EEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 108 ITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
..|+.. ...+.+|+|+||+.++ +. ..+.+++++++|+||+|++.
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~l~ 331 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHSTD 331 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTCCS
T ss_pred EECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchhcC
Confidence 666543 3457899999999973 33 55678889999999997654
No 66
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.72 E-value=2e-17 Score=143.36 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=95.7
Q ss_pred CChHHHHhhhhhhhC--------------CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN--------------DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~--------------~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
.|+|+|.++++.+.. +++++++++||+|||.++ ++++..+...+...++|+|+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999988764 368999999999999997 55555554444456999999999999999998
Q ss_pred HHHhhccCCceEEEEEcCCchhhhhHHh-cCCCcEEEEChHHHHHHHhcCCC-CCCCCccEEEEeccccccc
Q psy4275 94 FLVLGKVMNLRVSIITGGMDMVDQGKEL-AKKPHIVIATPGRLADHLDTCNT-FSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ilv~T~~~l~~~~~~~~~-~~~~~~~~iI~DE~h~~~~ 163 (182)
++.+.... +.+..+.......+ ..+++|+|+||+++...++.... ..++...+||+||||++..
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 88875431 12333333333334 34689999999999998765321 2345678999999999764
No 67
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.71 E-value=1e-16 Score=135.90 Aligned_cols=149 Identities=18% Similarity=0.154 Sum_probs=107.9
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
.++.+|+++++++.+.+.+...+ ..|.+.|++.++.... ++++++++|||+|||+.....+.........+.++++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 45778999999999999998887 5788888888877665 678999999999999954444443333322255799999
Q ss_pred CCHHHHHHHHHHHHHhh-ccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccc
Q psy4275 82 PTRELAYQIGDQFLVLG-KVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADR 160 (182)
Q Consensus 82 p~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~ 160 (182)
|+++++.|+++.+.... ...+..++...... .....+.+|+++||+.+...+... ..+.+++++|+||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~------~~~~~~~~I~v~T~G~l~r~l~~~--~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFE------NKTSNKTILKYMTDGMLLREAMED--HDLSRYSCIILDEAHE 219 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTE------EECCTTCSEEEEEHHHHHHHHHHS--TTCTTEEEEEECSGGG
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceeccc------cccCCCCCEEEECHHHHHHHHhhC--ccccCCCEEEecCccc
Confidence 99999999987665432 22233333211111 111346789999999999877653 3578899999999996
No 68
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.71 E-value=9.7e-18 Score=134.56 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=90.9
Q ss_pred CCCCChHHHHhhhhhhhCCCcE-EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDC-IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~-li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
|...++|.|+ +++.+.++++. ++++|||+|||.+++++++..+... +.+++|++|+++|+.|+++.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 4567788874 78998887776 8999999999999888988766654 5689999999999999988764 33
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.+....+.... ....+..|.++|++.+.+.+... ..+++++++|+||||++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEETTTCC
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeCCccC
Confidence 33221111100 12345679999999998877653 35778999999999987
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.70 E-value=5.7e-17 Score=131.41 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=94.6
Q ss_pred CChHHHHhhhhhh----hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHV----LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~----~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.++|+|.++++.+ ..++++++..+||+|||++++..+... .......+++||||. +++.||.++++++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~-~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELTPSLVICPL-SVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH-HHTTCCSSEEEEECS-TTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCCCCEEEEccH-HHHHHHHHHHHHHCC--Cc
Confidence 6999999999776 347889999999999999976555544 333334589999995 588999999998875 35
Q ss_pred eEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCCh
Q psy4275 104 RVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
++..++|+... ......+|+|+|++.+..... +...+++++|+||||++.+....
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~~~ 167 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQTK 167 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTTSH
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHhHH
Confidence 66666665421 123467899999999865433 22345789999999999876643
No 70
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.67 E-value=9.9e-17 Score=131.33 Aligned_cols=128 Identities=18% Similarity=0.083 Sum_probs=86.2
Q ss_pred CCCCChHHHHhhhhh----hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 25 GVKTPTEIQKAIIPH----VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~----~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
|+ +++|+|.+++.. +..+++.++++|||+|||.+++++++.. +.+++|++||++|++|+.+.++.+
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l--- 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL--- 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG---
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc---
Confidence 45 799999998654 4568999999999999999999988764 568999999999999998777664
Q ss_pred CCceEEEEEcCCch--------h---------------------------------------hhhHHhcCCCcEEEEChH
Q psy4275 101 MNLRVSIITGGMDM--------V---------------------------------------DQGKELAKKPHIVIATPG 133 (182)
Q Consensus 101 ~~~~~~~~~~~~~~--------~---------------------------------------~~~~~~~~~~~Ilv~T~~ 133 (182)
++++..+.|.... . ...+.....++|+|+|+.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 4445444432210 0 000111235799999999
Q ss_pred HHHHHHhcCC-C-----CCCCCccEEEEeccccccc
Q psy4275 134 RLADHLDTCN-T-----FSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 134 ~l~~~~~~~~-~-----~~~~~~~~iI~DE~h~~~~ 163 (182)
.+.+-..... . -.......+||||||++.+
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 9986432211 0 0234567999999999943
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.66 E-value=8.3e-17 Score=139.42 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=95.9
Q ss_pred CChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceE
Q psy4275 28 TPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRV 105 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 105 (182)
.++|+|.+++..+.. +.+++++++||+|||.+++..+........ ..+++||||+ +|+.||.+.+.+.+ +.++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 699999999988776 458899999999999998777766554432 4489999999 99999888876554 5667
Q ss_pred EEEEcCCchhhhh--HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCCh
Q psy4275 106 SIITGGMDMVDQG--KELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSL 167 (182)
Q Consensus 106 ~~~~~~~~~~~~~--~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~ 167 (182)
..++++....... .......+|+|+|++.+.........+...++++||+||||++.+.+..
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~ 291 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDA 291 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTB
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCc
Confidence 6666544322111 1223467999999998854322111233456899999999999876643
No 72
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.65 E-value=4.5e-17 Score=135.06 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHH
Q psy4275 11 LKLNPWLIRQCQTIGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQI 90 (182)
Q Consensus 11 ~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 90 (182)
+++++.+.+++... ...+.|.|++.++.+.+++++++++|||+|||.+++++++..+... +.+++|++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 34555554444432 2567788777899999999999999999999999999998877653 56899999999999999
Q ss_pred HHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 91 GDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.+.++ +..+. +.+... . .....+..+.++|.+.+...+... ..+++++++|+||||++
T Consensus 232 ~~~l~------~~~v~-~~~~~l-~---~~~tp~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 232 EEALR------GLPIR-YQTPAV-K---SDHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp HHHTT------TSCEE-ECCTTS-S---CCCCSSSCEEEEEHHHHHHHHHHC--SSCCCCSEEEEESTTCC
T ss_pred HHHhc------CCcee-Eecccc-e---eccCCCceEEEEChHHHHHHHhcc--ccccCCeEEEEECCCCC
Confidence 87765 23333 222110 0 011224467788888887766553 35788999999999998
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.3e-16 Score=130.76 Aligned_cols=133 Identities=18% Similarity=0.123 Sum_probs=99.1
Q ss_pred CChHHHHhhhhhhh----CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHVL----NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~----~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.++|+|.+++..+. .++++++..+||.|||+.++..+............+||||| .+++.||.+.++++.. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 68999999998665 68899999999999999987776665544333557999999 6678999999988875 46
Q ss_pred eEEEEEcCCchhhhhHH------------hcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 104 RVSIITGGMDMVDQGKE------------LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 104 ~~~~~~~~~~~~~~~~~------------~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
++..++|.......... ....++|+|+|++.+....... ...++++||+||||++-+...
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l---~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL---GSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH---HTSEEEEEEETTGGGGCCSSS
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH---hcCCcceeehhhhhhhcCchh
Confidence 77777777654332221 1235789999999997654331 123578999999999976554
No 74
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.63 E-value=6.3e-15 Score=122.94 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=96.7
Q ss_pred CChHHHHhhhhhhh---------CCCcEEEECCCCChHHHHHHHHHHHhhccCC----CCeeEEEEcCCHHHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVL---------NDEDCIGCAKTGSGKTLAFALPILQKWCEDP----YGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~---------~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~l~~q~~~~~ 94 (182)
.++|+|.+++..+. .++++++..+||+|||+.++..+...+...+ ...++|||+|+ +++.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998763 3567899999999999998777766554432 23469999996 7889999999
Q ss_pred HHhhccCCceEEEEEcCCchhhh--hHHh-c-----CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCC
Q psy4275 95 LVLGKVMNLRVSIITGGMDMVDQ--GKEL-A-----KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTS 166 (182)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-----~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~ 166 (182)
+++... .+.+..++++...... .... . ...+|+|+|++.+...... +....+++||+||||++-+...
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~~vI~DEaH~ikn~~~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV---LHKGKVGLVICDEGHRLKNSDN 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT---TTTSCCCEEEETTGGGCCTTCH
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH---hhcCCccEEEEECceecCChhh
Confidence 998765 4556666655432211 1111 1 1478999999998764432 3345688999999999987654
Q ss_pred hh
Q psy4275 167 LK 168 (182)
Q Consensus 167 ~~ 168 (182)
..
T Consensus 210 ~~ 211 (644)
T 1z3i_X 210 QT 211 (644)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 75
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.62 E-value=1.5e-15 Score=121.19 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
++++++++|||+|||.+++++++..+..+ +.+++|++|+++|+.|+++.++ +..+....|.... .-.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCC
Confidence 68899999999999999988888665544 5689999999999999887664 4455554443211 111
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.+.-+.+.|.+.+.+.+.. ...+++++++|+||+|++
T Consensus 69 ~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC
T ss_pred CCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC
Confidence 2445777888888766555 235788999999999997
No 76
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.58 E-value=1.6e-16 Score=127.11 Aligned_cols=108 Identities=21% Similarity=0.226 Sum_probs=71.2
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhh
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQG 118 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (182)
.+.+++++++++|||+|||.+++++++..+..+ +.+++|++|+++|+.|+++.++.+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~~---- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFSA---- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccccee----
Confidence 456789999999999999999999988876654 568999999999999998877643 22221111100
Q ss_pred HHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 119 KELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 119 ~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
....+.-+-..+.+.+...+.. ...+++++++|+||+|++
T Consensus 72 -v~Tp~~l~~~l~~~~l~~~~~~--~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 72 -HGSGREVIDAMCHATLTYRMLE--PTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTS--SSCCCCCSEEEETTTTCC
T ss_pred -ccCCccceeeecccchhHhhhC--cccccCccEEEEECcccc
Confidence 0000111222233333333222 235788999999999998
No 77
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.57 E-value=3.9e-15 Score=119.68 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=78.5
Q ss_pred hhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhh
Q psy4275 37 IPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVD 116 (182)
Q Consensus 37 ~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (182)
...+.+++++++++|||+|||.+++++++..+... +.+++|++|+++|+.|+++.++ +..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc--
Confidence 34456688999999999999999999998877653 5689999999999999988775 3333222111110
Q ss_pred hhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 117 QGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 117 ~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.-..+..+.++|.+.+...+... ..++++++||+||||++
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~ 124 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFT 124 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCC
T ss_pred ---CCCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccC
Confidence 01224457788888887766552 35788999999999984
No 78
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.57 E-value=1.5e-15 Score=126.92 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=82.3
Q ss_pred CChHHHH-----hhhhhhh------CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 28 TPTEIQK-----AIIPHVL------NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 28 ~~~~~Q~-----~~~~~~~------~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
.++++|+ ++++.++ ++++.++++|||+|||.+++++++..+..+ +.+++|++|+++|+.|+++.++.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccHHHHHHHHHHHHhc
Confidence 7888888 8888877 799999999999999999999998876654 56899999999999999887764
Q ss_pred hhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 97 LGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
+ ++. ...+... .....+.-+-+.+.+.+.+.+... ..+++++++|+||+|++
T Consensus 293 ~----~i~--~~~~~l~-----~v~tp~~ll~~l~~~~l~~~l~~~--~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 293 L----PVR--YLTPAVQ-----REHSGNEIVDVMCHATLTHRLMSP--LRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp S----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS--SCCCCCSEEEEESTTCC
T ss_pred C----Cee--eeccccc-----ccCCHHHHHHHHHhhhhHHHHhcc--cccccceEEEEeCCccc
Confidence 3 222 1111000 000112234455556655544442 45788999999999998
No 79
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.51 E-value=5e-14 Score=117.62 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=78.2
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKE 120 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (182)
.+++++++++|||+|||..++..+.. . .+.+|++|+++|+.|+++.++.. ++++..+.|+..... ..
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~----~---~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv--~T 219 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFS----A---KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV--QP 219 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH----S---SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC--ST
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHh----c---CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe--cC
Confidence 45789999999999999954444333 2 24599999999999999888775 778888888765411 01
Q ss_pred hcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccccCChhHH
Q psy4275 121 LAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSLMTSLKFF 170 (182)
Q Consensus 121 ~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~~~~~~~~ 170 (182)
-....+++++|++.+. ....++++|+||+|++.+.++...+
T Consensus 220 pGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~ 260 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAW 260 (677)
T ss_dssp TCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHH
T ss_pred CCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHH
Confidence 1113678999976441 2456799999999999877655433
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.35 E-value=1.6e-11 Score=102.01 Aligned_cols=134 Identities=21% Similarity=0.181 Sum_probs=103.1
Q ss_pred CCCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 24 IGVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 24 ~~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
.|+ ++++.|....-.+..|+ +.++.||.|||+++.++++-..+. |..+.+++|+..||.+-++++..+.+.+|+
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 354 78888888887777665 999999999999999998766665 557999999999999999999999999999
Q ss_pred eEEEEEcC--------------------------------------------------CchhhhhHHhcCCCcEEEEChH
Q psy4275 104 RVSIITGG--------------------------------------------------MDMVDQGKELAKKPHIVIATPG 133 (182)
Q Consensus 104 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~Ilv~T~~ 133 (182)
+|+++.+. .+..++...+ .|+|..+|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEccCc
Confidence 99988872 1111111222 5799999988
Q ss_pred HH-HHHHhcCC-----CCCCCCccEEEEeccccccccC
Q psy4275 134 RL-ADHLDTCN-----TFSLNRIKFLVLDEADRLSLMT 165 (182)
Q Consensus 134 ~l-~~~~~~~~-----~~~~~~~~~iI~DE~h~~~~~~ 165 (182)
-| .++++..- ..-.+.+.+.|+||+|.++=+.
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDe 261 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDE 261 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTG
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecC
Confidence 87 56776531 2234668899999999987543
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.18 E-value=4.5e-11 Score=99.26 Aligned_cols=81 Identities=23% Similarity=0.192 Sum_probs=67.2
Q ss_pred CChHHHHhhhhhh----hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc
Q psy4275 28 TPTEIQKAIIPHV----LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~----~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 103 (182)
+++|.|.+....+ .+++++++++|||+|||.+++++++..+... +.+++|++||++++.|+.+.++.+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 6899999988654 4589999999999999999999999877543 468999999999999999999998776677
Q ss_pred eEEEEEc
Q psy4275 104 RVSIITG 110 (182)
Q Consensus 104 ~~~~~~~ 110 (182)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 7766555
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.00 E-value=4.2e-09 Score=87.37 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=61.9
Q ss_pred HHHHHHHHCC-CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHH--HHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHH
Q psy4275 16 WLIRQCQTIG-VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLA--FALPILQKWCEDPYGIFALVLTPTRELAYQIGD 92 (182)
Q Consensus 16 ~i~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~--~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 92 (182)
.+.+.+.... .....++|+++++.+..++.++++|++|+|||.. +++..+...... .+.++++++||...+.++.+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHH
Confidence 4455555432 2233789999999999999999999999999954 444444433222 25689999999999999988
Q ss_pred HHHHhhccCC
Q psy4275 93 QFLVLGKVMN 102 (182)
Q Consensus 93 ~~~~~~~~~~ 102 (182)
.+.......+
T Consensus 215 ~~~~~~~~l~ 224 (608)
T 1w36_D 215 SLGKALRQLP 224 (608)
T ss_dssp HHTHHHHHSS
T ss_pred HHHHHHhcCC
Confidence 8776655444
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.94 E-value=2.1e-09 Score=89.82 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=53.6
Q ss_pred CChHHHHhhhhhhhC-CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 28 TPTEIQKAIIPHVLN-DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~-~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.+++.|.+++..++. ..-.+++||+|+|||.+....+...+.+ +.++++++||+..++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 589999999988775 4478999999999998865555444433 568999999999999988777653
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.86 E-value=2.4e-08 Score=83.09 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 26 VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 26 ~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
...+++.|.+++..+..+...+++||+|+|||.+....+. .+... .+.++++++||...++++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~-~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHH-HHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHH-HHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 3468999999999988888899999999999988554443 33332 2558999999999999988777653
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=5.3e-08 Score=83.02 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=54.7
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
..+++.|.+++..+..+...+++||+|+|||.+....+....... +.++++++||...++++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 468999999999988888899999999999988554443322211 458999999999999998887664
No 86
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.75 E-value=8.7e-08 Score=81.66 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=54.4
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
..+++.|.+++..+..++..+++||+|+|||.+....+ ..+... .+.++++++||...++++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHH-HHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHH-HHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 46899999999998888889999999999998854433 333332 2458999999999999988777653
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.66 E-value=1.1e-07 Score=78.40 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=50.6
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHH
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQ 93 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 93 (182)
..+++.|++++..+..++.+++.||+|+|||.... .++..+... +.++++++||...+..+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL--GLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CCeEEEecCcHHHHHHhHhh
Confidence 36899999999999989999999999999998743 334433333 56899999999988776554
No 88
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.63 E-value=1.4e-07 Score=75.68 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=51.2
Q ss_pred HHHCCCCCChHHHHhhhhhhhC-----CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHH
Q psy4275 21 CQTIGVKTPTEIQKAIIPHVLN-----DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQF 94 (182)
Q Consensus 21 l~~~~~~~~~~~Q~~~~~~~~~-----~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 94 (182)
+....+..+++.|++++..+.. ...+++.|++|+|||.+. ..++..+...+ ...+++++||...+..+.+.+
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-CceEEEecCcHHHHHHHHhhh
Confidence 4456677899999999987643 248999999999999874 44444444432 236999999998887765544
No 89
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.98 E-value=2e-05 Score=65.54 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=59.9
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhcc--CCc
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGKV--MNL 103 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~--~~~ 103 (182)
..+++.|.+++.. .++..++.|++|||||.+...-+.+.+...+ ...+++++++|+..+.++.+.+...... .++
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 4789999999973 3568999999999999997666666554432 2348999999999999998888776432 234
Q ss_pred eEEEEE
Q psy4275 104 RVSIIT 109 (182)
Q Consensus 104 ~~~~~~ 109 (182)
.+..++
T Consensus 86 ~v~Tfh 91 (647)
T 3lfu_A 86 WVGTFH 91 (647)
T ss_dssp EEEEHH
T ss_pred EEEcHH
Confidence 444443
No 90
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.88 E-value=5.3e-05 Score=59.33 Aligned_cols=122 Identities=11% Similarity=0.068 Sum_probs=77.5
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc--eE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL--RV 105 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~--~~ 105 (182)
.+.|+|...+..+...+..++..+-+.|||......++..+...+ +..+++++|+...+..+.+.++.+.+..+. +-
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~ 241 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhh
Confidence 689999999987655566889999999999987766666444433 458999999999988887777776654331 10
Q ss_pred -EEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 106 -SIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
........ . .+.++..|.+.+.. .+-++. .+..++|+||+|.+-+
T Consensus 242 ~~~~~~~~~----I-~f~nGs~i~~lsa~--~~slrG------~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 242 GIVEWNKGS----I-ELDNGSSIGAYASS--PDAVRG------NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CEEEECSSE----E-EETTSCEEEEEECS--HHHHHT------SCCSEEEEESGGGSTT
T ss_pred hhccCCccE----E-EeCCCCEEEEEECC--CCCccC------CCCCEEEechhhhcCC
Confidence 01111110 0 12245555444321 112233 1246899999998764
No 91
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.79 E-value=4.6e-05 Score=63.86 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=59.5
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhccC---Cc
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGKVM---NL 103 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~~---~~ 103 (182)
.+++.|.+++... +++.++.|+.|||||.+...-+.+.+...+ ...++++++.|+..+.++.+.+....... ++
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 5789999998753 578899999999999987655555544322 24579999999999999988887764432 35
Q ss_pred eEEEEEc
Q psy4275 104 RVSIITG 110 (182)
Q Consensus 104 ~~~~~~~ 110 (182)
.+..+++
T Consensus 80 ~v~Tfhs 86 (673)
T 1uaa_A 80 MISTFHT 86 (673)
T ss_dssp EEEEHHH
T ss_pred EEEeHHH
Confidence 5555443
No 92
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.79 E-value=0.00024 Score=58.71 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=79.1
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCC--ceE
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMN--LRV 105 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~--~~~ 105 (182)
.+.|+|+..+..+-..+..++..+-|.|||......++..+...+ +..++++.|+...+..+.+.++.+.+..+ ++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 589999999987644677899999999999987766666555543 45899999999999988888887766554 111
Q ss_pred EEE-EcCCchhhhhHHhcCCCcEEEEC--hHHHHHHHhcCCCCCCCCccEEEEeccccccc
Q psy4275 106 SII-TGGMDMVDQGKELAKKPHIVIAT--PGRLADHLDTCNTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 106 ~~~-~~~~~~~~~~~~~~~~~~Ilv~T--~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~~ 163 (182)
... ..... . .+.++..|...+ |+.+ +.. +.+++|+||+|.+-+
T Consensus 242 ~~~~~~~~~----i-~~~nGs~i~~~s~~~~~l----rG~------~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 242 GIVEWNKGS----I-ELDNGSSIGAYASSPDAV----RGN------SFAMIYIEDCAFIPN 287 (592)
T ss_dssp CEEEECSSE----E-EETTSCEEEEEECCHHHH----HHS------CCSEEEEETGGGCTT
T ss_pred ccccCCccE----E-EecCCCEEEEEeCCCCCc----cCC------CcceEEEehhccCCc
Confidence 111 11111 1 123455554433 3332 331 256899999998755
No 93
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.69 E-value=0.00011 Score=62.20 Aligned_cols=81 Identities=19% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC-CCeeEEEEcCCHHHHHHHHHHHHHhhcc--CCc
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP-YGIFALVLTPTRELAYQIGDQFLVLGKV--MNL 103 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~--~~~ 103 (182)
..+++.|.+++.. .+.+.++.|+.|||||.+...-+.+.+...+ ...++++++.|+..+.++.+.+...... .++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 4789999999865 3568999999999999987665665554332 2347999999999999998887776432 234
Q ss_pred eEEEEE
Q psy4275 104 RVSIIT 109 (182)
Q Consensus 104 ~~~~~~ 109 (182)
.+..++
T Consensus 88 ~v~Tfh 93 (724)
T 1pjr_A 88 WISTFH 93 (724)
T ss_dssp EEEEHH
T ss_pred EEeeHH
Confidence 555444
No 94
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.60 E-value=0.00016 Score=64.55 Aligned_cols=69 Identities=25% Similarity=0.155 Sum_probs=55.8
Q ss_pred CCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 27 KTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 27 ~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
..+++.|.+++..- ++++++.|+.|||||.+.+--++..+.... ...+++++++|++.+.++.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 36899999998654 779999999999999997766777666532 3458999999999999998877764
No 95
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.43 E-value=0.00019 Score=57.07 Aligned_cols=86 Identities=19% Similarity=0.106 Sum_probs=51.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
.+-.++.|+.|+|||....-.+ . . .+.++++|++++++.+.+.+... +. .
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~-~---~----~~~lVlTpT~~aa~~l~~kl~~~----~~--------~---------- 210 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRV-N---F----EEDLILVPGRQAAEMIRRRANAS----GI--------I---------- 210 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHC-C---T----TTCEEEESCHHHHHHHHHHHTTT----SC--------C----------
T ss_pred ccEEEEEcCCCCCHHHHHHHHh-c---c----CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----------
Confidence 3456789999999998753322 1 1 25799999999998877665332 00 0
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEeccccc
Q psy4275 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRL 161 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~ 161 (182)
.....-|.|-+.++- +. .....-..+.+|+||+.++
T Consensus 211 ~~~~~~V~T~dsfL~--~~-~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 211 VATKDNVRTVDSFLM--NY-GKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp CCCTTTEEEHHHHHH--TT-TSSCCCCCSEEEEETGGGS
T ss_pred ccccceEEEeHHhhc--CC-CCCCCCcCCEEEEeCcccC
Confidence 011233556555432 22 2112224789999999854
No 96
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.32 E-value=0.00051 Score=57.54 Aligned_cols=66 Identities=33% Similarity=0.361 Sum_probs=50.6
Q ss_pred CChHHHHhhhhhhhC----CC-cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhc
Q psy4275 28 TPTEIQKAIIPHVLN----DE-DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGK 99 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~-~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 99 (182)
.|++.|.+++..+.+ |. ..++.|.||+|||.++...+ ... +..+|||+|+..++.|+++.++.++.
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL-----GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH-----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh-----CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 788889888776543 32 46788999999998864333 322 22599999999999999999999864
No 97
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.31 E-value=0.0013 Score=45.51 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=17.5
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
++.+++.||+|+|||..+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i 58 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVAT 58 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 678999999999999875433
No 98
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.24 E-value=0.0014 Score=54.88 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=50.4
Q ss_pred CChHHHHhhhhhhhC----CC-cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhcc
Q psy4275 28 TPTEIQKAIIPHVLN----DE-DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKV 100 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~----~~-~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 100 (182)
.|+..|..++..+.+ +. ...+.|.||+|||.++.-.+ ... +..+++|+|+..++.|+++.++.+...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEV-----NKPTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH-----CCCEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHh-----CCCEEEEECCHHHHHHHHHHHHHHcCC
Confidence 688888887765543 43 46788999999998854333 322 125999999999999999999998653
No 99
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0069 Score=46.15 Aligned_cols=25 Identities=8% Similarity=-0.068 Sum_probs=18.9
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+.++++.||+|+|||.++-. ++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 56899999999999988543 34444
No 100
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.18 E-value=0.0008 Score=47.52 Aligned_cols=39 Identities=15% Similarity=-0.059 Sum_probs=27.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
|+-.++.|++|+|||+.++-.+.....+ +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 5567888999999998866554444333 56899998873
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.00043 Score=46.86 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.4
Q ss_pred HhhhhhhhCCCcEEEECCCCChHHHHHHH
Q psy4275 34 KAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 34 ~~~~~~~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
..++..+ .++...+.||+|+|||..+-.
T Consensus 28 ~~~l~~~-~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 28 VYVLRHK-HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp HHHCCCC-CCSEEEEESSSTTTTCHHHHH
T ss_pred HHHHHhc-CCCEEEEECCCCCCHHHHHHH
Confidence 3333333 678899999999999987543
No 102
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.08 E-value=0.00082 Score=51.52 Aligned_cols=40 Identities=8% Similarity=-0.126 Sum_probs=27.3
Q ss_pred ChHHHHhhhhhhh----CCC---cEEEECCCCChHHHHHHHHHHHhh
Q psy4275 29 PTEIQKAIIPHVL----NDE---DCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 29 ~~~~Q~~~~~~~~----~~~---~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
..|||.+.+..+. +++ ..++.||.|+|||..+...+-...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 3577777665543 332 389999999999998765554443
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.97 E-value=0.0053 Score=44.35 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=51.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELA 122 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (182)
|.-.++.|++|+|||+.++-.+.....+ +.+++++.|...- . ....+....|+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~--r---~~~~i~srlG~~------------------ 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDT--R---SIRNIQSRTGTS------------------ 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCG--G---GCSSCCCCCCCS------------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCc--h---HHHHHHHhcCCC------------------
Confidence 5567888999999999865554444333 4578888765321 0 000111211111
Q ss_pred CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecccccc
Q psy4275 123 KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEADRLS 162 (182)
Q Consensus 123 ~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~h~~~ 162 (182)
...+-+.+...+.+.+.... .-.+.++||+||++.+.
T Consensus 66 -~~~~~~~~~~~i~~~i~~~~--~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 -LPSVEVESAPEILNYIMSNS--FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp -SCCEEESSTHHHHHHHHSTT--SCTTCCEEEECSGGGSC
T ss_pred -ccccccCCHHHHHHHHHHHh--hCCCCCEEEEecCccCc
Confidence 11233455666666665521 12346899999999754
No 104
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.94 E-value=0.0014 Score=47.08 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=28.3
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
|+-.+++|++|+|||+.++-.+.....+ +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 4455688999999999866665555444 568999998754
No 105
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.0069 Score=42.62 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.8
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
No 106
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.89 E-value=0.0041 Score=45.95 Aligned_cols=22 Identities=23% Similarity=-0.068 Sum_probs=17.5
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++++.||+|+|||..+....
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999998864433
No 107
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.85 E-value=0.0057 Score=46.39 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=23.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++++++.||+|+|||..+-.. ...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i-~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAA-GNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHH-HHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHH-HHHHHHC--CCEEEEEE
Confidence 468999999999999885433 3333322 33455554
No 108
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.79 E-value=0.0024 Score=45.82 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=17.9
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.++++++.||+|+|||..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l 72 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAA 72 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3678999999999999885433
No 109
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.73 E-value=0.0025 Score=45.09 Aligned_cols=38 Identities=13% Similarity=-0.034 Sum_probs=28.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
++-.++.||+|+|||...+-.+-....+ +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 5677889999999998755555554444 4578888876
No 110
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.72 E-value=0.0034 Score=45.60 Aligned_cols=39 Identities=13% Similarity=-0.010 Sum_probs=29.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
|+-.++.|++|+|||+.++-.+.....+ +.+++++.|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecC
Confidence 5667888999999999866665555444 56888888764
No 111
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.66 E-value=0.016 Score=39.55 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=17.2
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 468999999999999886443
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.62 E-value=0.016 Score=43.88 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=13.2
Q ss_pred EEEECCCCChHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~ 63 (182)
.++.||+|+|||..+...
T Consensus 51 ~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp EEECSSTTSSHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHH
Confidence 455667999999886443
No 113
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.009 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.3
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
++++++.||+|+|||..+-..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~ 64 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLV 64 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 568999999999999885433
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.53 E-value=0.0047 Score=44.36 Aligned_cols=40 Identities=13% Similarity=-0.041 Sum_probs=27.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
|.-.+++|++|+|||+..+-.+.....+ +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEeccC
Confidence 5567889999999998765554433333 457899988754
No 115
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.51 E-value=0.033 Score=40.00 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=33.5
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFL 95 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 95 (182)
+..|.-.++.|++|+|||..+...+...... +..++++..... ..++.+.+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC-HHHHHHHHH
Confidence 3457788999999999999866555554433 346777765433 244444443
No 116
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.45 E-value=0.011 Score=47.00 Aligned_cols=21 Identities=19% Similarity=0.036 Sum_probs=17.0
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ai 150 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSI 150 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 357999999999999875433
No 117
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.32 E-value=0.032 Score=42.73 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
++.+++.||+|+|||..+-.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999988544
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.30 E-value=0.03 Score=39.78 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=27.6
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.+..|..+++.||+|+|||..+...+...... +..++++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 34557788999999999998765554443333 335676654
No 119
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.28 E-value=0.032 Score=39.42 Aligned_cols=36 Identities=22% Similarity=0.024 Sum_probs=29.2
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
...+++.+++|.|||.+++-.++..+.. +.+++++-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEE
Confidence 4578888999999999988777776655 66888884
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.27 E-value=0.0052 Score=51.32 Aligned_cols=59 Identities=17% Similarity=0.219 Sum_probs=42.5
Q ss_pred CChHHHHhhhhhhhC--CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLN--DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGD 92 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~--~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 92 (182)
.++.-|.+++..+.. ....++.|+-|.|||...-+.+.. +.. +++|.+|+..-+..+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~-----~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG-----RAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS-----CEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh-----CcEEECCCHHHHHHHHH
Confidence 578899999988776 446789999999999765444443 332 46899999877654433
No 121
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.18 E-value=0.025 Score=42.42 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=16.0
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
+.++.||+|+|||..+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l 66 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALAL 66 (327)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 7999999999999886433
No 122
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.17 E-value=0.031 Score=37.92 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=52.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.- -. ..+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV------AA-RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GT-TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh------hh-cCCchhc
Confidence 347999999999999888877664 78899999988765444332 246789999932 12 4566777
Q ss_pred ccEEEEec
Q psy4275 150 IKFLVLDE 157 (182)
Q Consensus 150 ~~~iI~DE 157 (182)
++++|.-+
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 77777543
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.16 E-value=0.021 Score=43.97 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.6
Q ss_pred cEEEECCCCChHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~ 62 (182)
++++.||+|+|||..+-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 799999999999988643
No 124
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.14 E-value=0.015 Score=44.20 Aligned_cols=20 Identities=20% Similarity=0.204 Sum_probs=16.9
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
.++++.||+|+|||..+-..
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999886443
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.0071 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=16.8
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l 65 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYI 65 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 457999999999999885433
No 126
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.08 E-value=0.046 Score=37.48 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=51.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++..++.+++.+... ++.+..++|+.+...+...+ .+..+|+|+|.- -. ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~-~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV------CA-RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS------CC-TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc------hh-cCCCccc
Confidence 458999999999988888777653 78899999988765544332 246789999922 12 4567778
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888774
No 127
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.019 Score=43.42 Aligned_cols=21 Identities=5% Similarity=-0.417 Sum_probs=16.8
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
++.++.||.|+|||..+...+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999998765443
No 128
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.93 E-value=0.053 Score=43.21 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=30.6
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
.+..|.-+++.|++|+|||..++..+....... +..++|+...
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECC
Confidence 345577899999999999998776666655432 3367777644
No 129
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=95.88 E-value=0.058 Score=36.57 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=51.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.- -. ..+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL------LA-RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG------GT-TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh------hh-cCCCccc
Confidence 458999999999998888877664 67889999988765444332 246789999932 12 4456777
Q ss_pred ccEEEEe
Q psy4275 150 IKFLVLD 156 (182)
Q Consensus 150 ~~~iI~D 156 (182)
++++|.-
T Consensus 99 ~~~Vi~~ 105 (165)
T 1fuk_A 99 VSLVINY 105 (165)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7776654
No 130
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.87 E-value=0.055 Score=40.97 Aligned_cols=45 Identities=9% Similarity=-0.146 Sum_probs=32.1
Q ss_pred hhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 36 IIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 36 ~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
.+.-+..|.-+++.|++|+|||..++-.+.....+ +..++++.-.
T Consensus 61 ~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE 105 (315)
T 3bh0_A 61 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 105 (315)
T ss_dssp HHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC
Confidence 33445557789999999999998877666665544 3468887744
No 131
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.87 E-value=0.014 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=16.4
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
.++++.||+|+|||..+-..
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 36899999999999886433
No 132
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.077 Score=40.41 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=15.8
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
.+.++.||+|+|||..+-.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~ 55 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMA 55 (354)
T ss_dssp CCEEEECSTTSSHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4599999999999988543
No 133
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.80 E-value=0.076 Score=42.17 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=29.8
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..|.-+++.|++|+|||..++-.+....... +..++++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 44467789999999999998776666655432 3467777654
No 134
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.75 E-value=0.15 Score=36.46 Aligned_cols=44 Identities=9% Similarity=-0.172 Sum_probs=28.8
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPT 83 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 83 (182)
+..|.-+.+.||+|+|||..+...+...+... ..+..++++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 44577899999999999998766665433321 012356666543
No 135
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.74 E-value=0.024 Score=42.71 Aligned_cols=21 Identities=24% Similarity=0.105 Sum_probs=17.2
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
..++++.||+|+|||..+-..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 468999999999999886433
No 136
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.71 E-value=0.16 Score=35.41 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=50.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.- .. ..+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~------~~-~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV------AS-KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH------HH-TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc------hh-cCCCccc
Confidence 347999999999999888887765 78899999988765544332 246889999932 11 3455666
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 123 v~~VI~ 128 (191)
T 2p6n_A 123 IQHVIN 128 (191)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666655
No 137
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=95.71 E-value=0.051 Score=38.63 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=50.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.+... ++.+..++|+.+..++...+ .+..+|+|+|.- .. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~-~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV------AA-RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT------TT-CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh------hh-cCCCCcc
Confidence 448999999999999888877664 78899999998765544333 246789999932 12 4456667
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 766653
No 138
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=95.51 E-value=0.056 Score=37.03 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=52.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.+... ++.+..++|+.+..++...+ .+..+|+|+|.- -. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~-~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FG-RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CS-TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hh-cCcchhh
Confidence 458999999999999888887664 78889999988765544332 246789999932 11 4456777
Q ss_pred ccEEEEec
Q psy4275 150 IKFLVLDE 157 (182)
Q Consensus 150 ~~~iI~DE 157 (182)
++++|.-+
T Consensus 100 ~~~Vi~~d 107 (172)
T 1t5i_A 100 VNIAFNYD 107 (172)
T ss_dssp CSEEEESS
T ss_pred CCEEEEEC
Confidence 77776543
No 139
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.49 E-value=0.26 Score=40.06 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=60.8
Q ss_pred HHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHH
Q psy4275 61 ALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLA 136 (182)
Q Consensus 61 ~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~ 136 (182)
+..+...+.....+.++||.++++.-++.+++.++..... ++.+..++|+.....+...+ .+..+|+|+|.-
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~--- 401 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV--- 401 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG---
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch---
Confidence 3334444443344668999999999999999888876442 67888999988765544332 247889999942
Q ss_pred HHHhcCCCCCCCCccEEEEec
Q psy4275 137 DHLDTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 137 ~~~~~~~~~~~~~~~~iI~DE 157 (182)
-. ..+++.++++||.-.
T Consensus 402 ---~~-~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 402 ---GA-RGMDFPNVHEVLQIG 418 (563)
T ss_dssp ---GT-SSCCCTTCCEEEEES
T ss_pred ---hh-cCCCcccCCEEEEEC
Confidence 22 456777787777554
No 140
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.47 E-value=0.56 Score=35.25 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=16.5
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
+.+++.||.|+|||......
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 67899999999999875433
No 141
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.43 E-value=0.042 Score=36.50 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.0
Q ss_pred hCCCcEEEECCCCChHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~ 61 (182)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 347799999999999998864
No 142
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.32 E-value=0.18 Score=40.56 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=55.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcC-------Cch-
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGG-------MDM- 114 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~-------~~~- 114 (182)
+....+.|-+|+||+..+...+ .. . +..+++|+|+...+.++++.++.+... .|..+-.. .+.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~-~~-~----~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~~p~ 84 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIA-ER-H----AGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSFSPH 84 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHH-HH-S----SSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSSCCC
T ss_pred CCeEEEeCCCchHHHHHHHHHH-HH-h----CCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCcccccccccCCC
Confidence 5577889999999998743322 22 1 235899999999999999999988653 24333221 000
Q ss_pred ----hhhh----HHhcCCCcEEEEChHHHHH
Q psy4275 115 ----VDQG----KELAKKPHIVIATPGRLAD 137 (182)
Q Consensus 115 ----~~~~----~~~~~~~~Ilv~T~~~l~~ 137 (182)
..+. +....+..|+|+|...++.
T Consensus 85 ~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHHHHHHGGGCCSSEEEEEHHHHHB
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEHHHHhh
Confidence 0111 1122356799999888864
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.017 Score=45.86 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=38.1
Q ss_pred CccCCccCCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHH
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTI---GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
+|-.+|++.+--++..+.+.+. .+..|.-++...+ ...+.+++.||+|+|||..+-..+-
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHHHHHHH
Confidence 4566899997666666666542 1223443433333 2256899999999999988644433
No 144
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.25 E-value=0.34 Score=39.64 Aligned_cols=86 Identities=12% Similarity=0.096 Sum_probs=59.7
Q ss_pred HHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHH
Q psy4275 64 ILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHL 139 (182)
Q Consensus 64 ~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~ 139 (182)
+...+.....+.++||.++++.-++.+++.++..... ++.+..++|+.....+...+ .+..+|+|+|.-
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------ 350 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------ 350 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------
Confidence 3333333333568999999999999999888876442 67888999988765443332 247889999942
Q ss_pred hcCCCCCCCCccEEEEec
Q psy4275 140 DTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 140 ~~~~~~~~~~~~~iI~DE 157 (182)
-. ..++++++++||.-.
T Consensus 351 ~~-~GiDip~v~~VI~~~ 367 (579)
T 3sqw_A 351 GA-RGMDFPNVHEVLQIG 367 (579)
T ss_dssp GT-SSCCCTTCCEEEEES
T ss_pred hh-cCCCcccCCEEEEcC
Confidence 22 556778888877655
No 145
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=95.10 E-value=0.1 Score=36.20 Aligned_cols=88 Identities=20% Similarity=0.221 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEE
Q psy4275 53 GSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIV 128 (182)
Q Consensus 53 g~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Il 128 (182)
...|... +.-++... ..+.++||.++++.-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+
T Consensus 29 ~~~K~~~-L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHHH-HHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 4456443 33344332 22558999999999998888777664 67888899877654433222 2467899
Q ss_pred EEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 129 IATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 129 v~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
|+|.- + . ..+++..++++|.
T Consensus 101 vaT~~-~-----~-~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 101 VATAV-A-----A-RGLDISNVKHVIN 120 (185)
T ss_dssp EEEC-------------CCCSBSEEEE
T ss_pred EEcCh-h-----h-cCCCcccCCEEEE
Confidence 99832 1 1 3345556665554
No 146
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.01 E-value=0.1 Score=41.49 Aligned_cols=57 Identities=23% Similarity=-0.003 Sum_probs=33.5
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc--CCHHHHHHHHHHHHHhhccCCceEEE
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT--PTRELAYQIGDQFLVLGKVMNLRVSI 107 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~ 107 (182)
-+++.|++|+|||+.+.-.+... ... +.+++++. |.+.-+ .+.++.+....++.+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l-~~~--G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYF-QKR--GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HTT--TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEEC
T ss_pred EEEEECcCCCCHHHHHHHHHHHH-HHC--CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEe
Confidence 57788999999999865444333 332 45676665 333322 23445555555666543
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.91 E-value=0.021 Score=42.85 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=16.6
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+.++.||+|+|||..+....
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 359999999999998754433
No 148
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.85 E-value=0.25 Score=38.27 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=51.6
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCC
Q psy4275 73 YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLN 148 (182)
Q Consensus 73 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 148 (182)
.+.+++|.++++.-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.- -. ..+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~------~~-~Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV------AA-RGLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH------HH-TTSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh------hh-cCCCcc
Confidence 3568999999999999888887664 78899999988765443332 246789999942 12 445666
Q ss_pred CccEEEE
Q psy4275 149 RIKFLVL 155 (182)
Q Consensus 149 ~~~~iI~ 155 (182)
.++++|.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 7776664
No 149
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.83 E-value=0.091 Score=40.21 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.0
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
..++.||+|+|||..+....
T Consensus 40 ~~ll~G~~G~GKT~la~~la 59 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLA 59 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998864443
No 150
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.75 E-value=0.17 Score=37.30 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=22.2
Q ss_pred hhhhCCCcEEEECCCCChHHHHHHHHHH
Q psy4275 38 PHVLNDEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 38 ~~~~~~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
..+..|.-+++.||+|+|||+.+...+.
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3456688899999999999988665554
No 151
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.71 E-value=0.025 Score=37.55 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=17.1
Q ss_pred hCCCcEEEECCCCChHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~ 60 (182)
..+.++++.|++|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 44678999999999999775
No 152
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.69 E-value=0.038 Score=38.49 Aligned_cols=39 Identities=15% Similarity=-0.066 Sum_probs=27.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
++-.++.|++|+|||+.++-.+.....+ +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 4557889999999999865444443333 45788888873
No 153
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.68 E-value=0.084 Score=36.82 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.4
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
+++++.||+|+|||..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 6899999999999987543
No 154
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.45 E-value=0.064 Score=50.16 Aligned_cols=43 Identities=19% Similarity=0.003 Sum_probs=32.9
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
..++++++.||+|+|||..+...+.....+ +.+++++.....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 1467 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEccccc
Confidence 347899999999999999877766665443 5678888876544
No 155
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.37 E-value=0.031 Score=41.33 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=32.0
Q ss_pred cCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh--hhCCCcEEEECCCCChHHHHHHHH
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH--VLNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
-.+|+++.-.+...+.+...-.. + -...+.+.. +...+++++.||+|+|||..+-..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL-P-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH-H-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH-H-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 34677776566666655432110 0 000111111 234678999999999999886443
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.30 E-value=0.044 Score=40.41 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=17.9
Q ss_pred hhCCCcEEEECCCCChHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~ 61 (182)
+..|..+.+.||||+|||+..-
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHH
Confidence 4557788999999999998743
No 157
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.25 E-value=0.11 Score=40.02 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
...++++.||+|+|||..+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3568999999999999986443
No 158
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.24 E-value=0.14 Score=38.51 Aligned_cols=71 Identities=17% Similarity=0.254 Sum_probs=50.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.+... ++.+..++|+.+..++...+ .+..+|+|+|.- .. ..+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~-~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AA-RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TT-CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hh-cCccccc
Confidence 458999999999988877776553 78899999998765544333 246789999932 22 4556777
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 97 v~~VI~ 102 (300)
T 3i32_A 97 VDLVVH 102 (300)
T ss_dssp CSEEEE
T ss_pred eeEEEE
Confidence 776664
No 159
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.16 E-value=0.38 Score=36.74 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=54.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.++++.-++.+++.++.. +..+..++|+.+..++...+ .+..+|+|+|.- -. ..+++++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV------LA-RGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG------GS-SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh------hh-cCCCccc
Confidence 468999999999998888887664 67888999987765443332 246789999932 22 5567888
Q ss_pred ccEEEEeccc
Q psy4275 150 IKFLVLDEAD 159 (182)
Q Consensus 150 ~~~iI~DE~h 159 (182)
++++|.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 8888865443
No 160
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=94.05 E-value=0.13 Score=45.95 Aligned_cols=54 Identities=20% Similarity=0.064 Sum_probs=41.7
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCC---------CCeeEEEEcCCHHHHHHHHHHHHHh
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDP---------YGIFALVLTPTRELAYQIGDQFLVL 97 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~---------~~~~~lil~p~~~l~~q~~~~~~~~ 97 (182)
.+.++.|+.|||||.+...-++..+...+ .-.++|+|+=|++-+.++.+.+...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45699999999999987777777665421 1347999999999999887776653
No 161
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.93 E-value=0.064 Score=40.52 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=18.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
++++++.||+|+|||..+......
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999876544333
No 162
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.81 E-value=0.48 Score=39.08 Aligned_cols=72 Identities=13% Similarity=0.150 Sum_probs=52.4
Q ss_pred CCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCC
Q psy4275 73 YGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLN 148 (182)
Q Consensus 73 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~ 148 (182)
.+.++||.++++.-++++++.++.. ++.+..++|+.+..++.... .+..+|+|+|.. -. ..++.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a------~~-~GID~p 334 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA------FG-MGIDKP 334 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT------SC-TTCCCS
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------hh-cCCCcc
Confidence 3568999999999999988888764 78899999998765443322 346789999932 12 455677
Q ss_pred CccEEEE
Q psy4275 149 RIKFLVL 155 (182)
Q Consensus 149 ~~~~iI~ 155 (182)
++++||.
T Consensus 335 ~V~~VI~ 341 (591)
T 2v1x_A 335 DVRFVIH 341 (591)
T ss_dssp CEEEEEE
T ss_pred cccEEEE
Confidence 7777664
No 163
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.73 E-value=0.089 Score=40.65 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.+..+++.||||+|||+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3557899999999999874
No 164
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.1 Score=40.98 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=33.8
Q ss_pred ccCCccCCCCCHHHHHHHHHC-C--CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTI-G--VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~-~--~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
|--+|++.+=-++..+.+.+. . +..|.-++...+ ...+.+++.||+|+|||..+-..+-+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 345778875344444444332 1 122333333222 23568999999999999886444433
No 165
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.65 E-value=0.095 Score=41.91 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=35.6
Q ss_pred CccCCccCCCCCHHHHHHHHHCC---CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHH
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIG---VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
.|--+|++.+=-+++.+.+.+.- +..+.-++... +..-+.+++.||+|+|||..+-..+-
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 34457888875556666665421 11222222222 22357899999999999988644433
No 166
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.58 E-value=0.13 Score=40.63 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHhhhhhhh--CCCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 33 QKAIIPHVL--NDEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 33 Q~~~~~~~~--~~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+...+..+. .+..+++.||||+|||+.. ..++..+
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 344444333 3556789999999999874 3344433
No 167
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=0.056 Score=42.98 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=33.3
Q ss_pred ccCCccCCCCCHHHHHHHHHC-C--CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTI-G--VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~-~--~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
|--+|++.+=-++..+.+... . +..|.-++...+ ..-+.+++.||+|+|||..+-..+-+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445677776444444444332 1 122222222222 23578999999999999986544433
No 168
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.55 E-value=0.077 Score=41.88 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=16.3
Q ss_pred CCcEEEECCCCChHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~ 60 (182)
..|+++.|+||+|||...
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 679999999999999974
No 169
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=93.40 E-value=0.065 Score=47.76 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=31.9
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
-++.|+.|||||.+.+.-+.+.+.+...+.++++++|.+.-
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~T 44 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMT 44 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCccc
Confidence 47889999999999877777666555555689999997653
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.34 E-value=0.15 Score=34.61 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.0
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~ 63 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGL 63 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 467999999999999885433
No 171
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.30 E-value=0.11 Score=40.31 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.5
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
.+.|.++.|+||+|||...-..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999875544443
No 172
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=93.24 E-value=0.34 Score=37.33 Aligned_cols=71 Identities=13% Similarity=0.209 Sum_probs=52.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.++++.-++.+++.+... +..+..++|+....++...+ .+..+|+|+|.- -. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CA-RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GT-SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cc-cCCCccC
Confidence 458999999999999888887765 67888999988765544332 246789999932 22 5567888
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 335 ~~~Vi~ 340 (412)
T 3fht_A 335 VSVVIN 340 (412)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888774
No 173
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.09 Score=41.66 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=32.3
Q ss_pred ccCCccCCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTI---GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
|--+|++.+=-+++.+.+... .+..+.-++...+ ...+.+++.||+|+|||..+-..+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHHHHHH
Confidence 345677775444444444321 1122322332222 235679999999999998864433
No 174
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.21 E-value=0.044 Score=41.13 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=31.6
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhh--hhCCCcEEEECCCCChHHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPH--VLNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
+-.+|++++-.+.+.+.+...-. .+..+. +.+.. +..++.+++.||+|+|||..+-..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~-~~~~~~-~~~~~~~~~~~~~vLL~Gp~GtGKT~la~al 69 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ-YPVEHP-DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-HHHHCH-HHHHHHCCCCCSEEEEECSSSSSHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH-HHhhCH-HHHHHcCCCCCceEEEECCCCcCHHHHHHHH
Confidence 33467777655555555543210 000000 11111 234678999999999999886433
No 175
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=93.14 E-value=0.27 Score=38.97 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=46.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
+.+++|++|++.-++.+++.++.. ++++..++|+...........+..+|+|+|.- -. ..++++ +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v------~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATDI------AE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESSS------TT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECCh------hh-eeeccC-ceEE
Confidence 458999999999999988888765 68898999854332222222346899999932 22 456777 8877
Q ss_pred E
Q psy4275 154 V 154 (182)
Q Consensus 154 I 154 (182)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 176
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.11 E-value=1.2 Score=37.15 Aligned_cols=78 Identities=12% Similarity=0.211 Sum_probs=58.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.++++..++.+++.++.. ++++..++|+....++...+ .+..+|+|+|.- -. ..+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~------l~-~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL------LR-EGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC------CS-TTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch------hh-CCcccCC
Confidence 568999999999998888777664 67888889887655444332 246789999831 12 5678889
Q ss_pred ccEEEEecccccc
Q psy4275 150 IKFLVLDEADRLS 162 (182)
Q Consensus 150 ~~~iI~DE~h~~~ 162 (182)
++++|+-|++...
T Consensus 514 v~lVi~~d~d~~G 526 (661)
T 2d7d_A 514 VSLVAILDADKEG 526 (661)
T ss_dssp EEEEEETTTTCCT
T ss_pred CCEEEEeCccccc
Confidence 9999998886544
No 177
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.09 E-value=0.07 Score=38.34 Aligned_cols=41 Identities=24% Similarity=0.107 Sum_probs=28.2
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
..|.-.++.|++|+|||..++-.+.+...+. +..++|+.-.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc
Confidence 3467789999999999988776666544432 3356776643
No 178
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.97 E-value=0.49 Score=36.39 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=50.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.+++..-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.- -. ..++++.
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~------~~-~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL------LT-RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC------SS-SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCc------cc-cCCCccC
Confidence 458999999999998888887765 67888899988765443322 246789999931 11 4567777
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 327 ~~~Vi~ 332 (400)
T 1s2m_A 327 VNVVIN 332 (400)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 777664
No 179
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.93 E-value=0.75 Score=36.17 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=51.3
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCCcc
Q psy4275 76 FALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNRIK 151 (182)
Q Consensus 76 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~ 151 (182)
++||.++++.-++.+++.+... ++.+..++|+....++...+ .+..+|+|+|.- -. ..+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------~~-rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------AS-RGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG------GT-SSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh------hh-CCCCcccCC
Confidence 4999999999998888777664 78899999998765554433 246789999942 22 556788888
Q ss_pred EEEE
Q psy4275 152 FLVL 155 (182)
Q Consensus 152 ~iI~ 155 (182)
++|.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 180
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.92 E-value=0.13 Score=38.93 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=34.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccC---------CCC----eeEEEEcCCHHH-HHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCED---------PYG----IFALVLTPTREL-AYQIGDQFLV 96 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~---------~~~----~~~lil~p~~~l-~~q~~~~~~~ 96 (182)
|.-.++.|++|+|||..++..+....... ..+ .+++|+.-.... .+++.+.++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998776666543221 112 578888866542 3444444443
No 181
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.91 E-value=0.12 Score=36.65 Aligned_cols=35 Identities=26% Similarity=0.201 Sum_probs=27.6
Q ss_pred CChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHH
Q psy4275 28 TPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 28 ~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
.-+..|..++..+..|.-+.+.||+|+|||+..-+
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHH
Confidence 34455677888888898899999999999987543
No 182
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.90 E-value=0.6 Score=36.47 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc--------CCchhhhhHHh--
Q psy4275 52 TGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG--------GMDMVDQGKEL-- 121 (182)
Q Consensus 52 tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~-- 121 (182)
..++|.... .-++........+.++||.+++...++.+++.++.. ++++..++| +.+..++...+
T Consensus 340 ~~~~k~~~l-~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDKL-KEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHHH-HHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHHH-HHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 445565443 333333322122568999999999988888877765 788888888 44443332222
Q ss_pred --cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEecc
Q psy4275 122 --AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDEA 158 (182)
Q Consensus 122 --~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE~ 158 (182)
.+..+|+|+|.- -. ..+++..++++|+-+.
T Consensus 415 F~~~~~~vLv~T~~------~~-~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 415 FARGEFNVLVATSV------GE-EGLDVPEVDLVVFYEP 446 (494)
T ss_dssp HHHTSCSEEEECGG------GG-GGGGSTTCCEEEESSC
T ss_pred HhcCCceEEEECCc------cc-cCCCchhCCEEEEeCC
Confidence 246789999932 12 4456777777775443
No 183
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.85 E-value=0.37 Score=35.69 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=17.4
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999886433
No 184
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.84 E-value=0.17 Score=40.97 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHH
Q psy4275 25 GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 25 ~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~ 60 (182)
.+..-...-..+...+..+.++++.||+|+|||..+
T Consensus 23 ~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333444444555566677899999999999999875
No 185
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.61 E-value=0.042 Score=40.80 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=28.1
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHH-Hhhhhhh--hCCCcEEEECCCCChHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQ-KAIIPHV--LNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q-~~~~~~~--~~~~~~li~~~tg~GKT~~~~~ 62 (182)
+--+|++++--+++.+.+...-. .|+. .+.+..+ .-.+.+++.||+|+|||+.+-.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 44578888766667766654211 1111 1122221 1134599999999999987543
No 186
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.60 E-value=0.14 Score=38.69 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=23.6
Q ss_pred hHHHHhhhhhhhCCCcEEEECCCCChHHHHHHH
Q psy4275 30 TEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 30 ~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
...-..+...+..++++++.||+|+|||..+-.
T Consensus 33 ~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 33 KYMINRLLIGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHH
Confidence 333344444555688999999999999987543
No 187
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.59 E-value=0.57 Score=35.78 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=52.2
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.+++..-++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|.- - ...+++..
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~-~~Gidi~~ 318 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------F-GRGMDIER 318 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC------C-SSCBCCTT
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh------h-hcCCCccc
Confidence 458999999999999888877664 67888999987754443322 236789999921 1 14567777
Q ss_pred ccEEEEec
Q psy4275 150 IKFLVLDE 157 (182)
Q Consensus 150 ~~~iI~DE 157 (182)
++++|.-+
T Consensus 319 ~~~Vi~~~ 326 (391)
T 1xti_A 319 VNIAFNYD 326 (391)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88777644
No 188
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.50 E-value=0.4 Score=36.94 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=17.4
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
..++++.||+|+|||..+-..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 468999999999999886443
No 189
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.44 E-value=0.37 Score=35.09 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCChHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~ 61 (182)
.+.++++.||+|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 46789999999999998753
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.39 E-value=0.17 Score=41.01 Aligned_cols=38 Identities=21% Similarity=0.083 Sum_probs=24.6
Q ss_pred hHHHHhhhh-hhhCCCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 30 TEIQKAIIP-HVLNDEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 30 ~~~Q~~~~~-~~~~~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+.+...+. .+..|.++++.||||+|||+.. ..++..+
T Consensus 246 ~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 333333333 3456888999999999999874 3344433
No 191
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.36 E-value=0.52 Score=36.39 Aligned_cols=72 Identities=13% Similarity=0.174 Sum_probs=52.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..+++|.+++..-++.+++.+... ++.+..++|+....++...+ .+..+|+|+|.- -. ..+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WA-RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GS-SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hh-CcCCccc
Confidence 348999999999988888777664 67888999988765443332 246789999942 22 5567888
Q ss_pred ccEEEEe
Q psy4275 150 IKFLVLD 156 (182)
Q Consensus 150 ~~~iI~D 156 (182)
++++|.-
T Consensus 345 v~~Vi~~ 351 (410)
T 2j0s_A 345 VSLIINY 351 (410)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 8877753
No 192
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.28 E-value=0.1 Score=36.40 Aligned_cols=24 Identities=17% Similarity=-0.130 Sum_probs=18.6
Q ss_pred hCCCcEEEECCCCChHHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
..++.+++.|++|+|||+.+-...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHH
Confidence 346789999999999999864443
No 193
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.26 E-value=0.45 Score=37.72 Aligned_cols=57 Identities=25% Similarity=0.146 Sum_probs=31.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc--CCHHHHHHHHHHHHHhhccCCceEE
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT--PTRELAYQIGDQFLVLGKVMNLRVS 106 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~ 106 (182)
.-+++.|++|+|||+.+...+... ... +.+++++. +.+.-+ .+.+..+....++.+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l-~~~--G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~ 156 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFY-KKR--GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVY 156 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHH-HHT--TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEecCccchhH---HHHHHHHHHhcCCcee
Confidence 356778999999998865444333 232 45676665 333222 2334444444455443
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.21 E-value=0.13 Score=38.84 Aligned_cols=58 Identities=9% Similarity=0.008 Sum_probs=32.0
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHH-hhhhh-hhCCCcEEEECCCCChHHHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQK-AIIPH-VLNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~-~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+-.+|+++.-.+...+.+...-. .|... +.+.. ....+++++.||+|+|||..+-...
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 34467777666666666653211 11110 01111 1124579999999999998864443
No 195
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.19 E-value=0.56 Score=38.03 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=51.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.++.. ++.+..++|+.+..++.... .++.+|+|+|.. -. ..+++++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a------~~-~GiD~p~ 304 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA------FG-MGINKPN 304 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT------SC-TTTCCTT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------hh-CCCCccC
Confidence 457999999999999988888764 77899999988764443322 346889999942 12 4556777
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 305 v~~VI~ 310 (523)
T 1oyw_A 305 VRFVVH 310 (523)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777765
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.18 E-value=0.096 Score=37.35 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.8
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
++.++.||+|+|||..+..
T Consensus 59 n~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp SEEEEESCGGGCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999988643
No 197
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.12 E-value=0.13 Score=40.70 Aligned_cols=61 Identities=21% Similarity=0.197 Sum_probs=34.3
Q ss_pred CccCCccCCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTI---GVKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
.+--+|++.+==++..+.+.+. .+..+.-++...+ ...+.+++.||+|+|||..+-..+-+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHHHHHHH
Confidence 3455788885333333333321 1223333333332 22568999999999999986444433
No 198
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=91.33 E-value=0.027 Score=38.45 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=38.8
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIAT 131 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T 131 (182)
+.++||.++++..++.+++.++.. ++.+..++|+.+..++...+ .+..+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 458999999999888877777654 67788888877654443332 2356789988
No 199
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.00 E-value=0.2 Score=34.84 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=25.4
Q ss_pred EEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLV 96 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 96 (182)
.++.|++|||||..+.-.+.. +..++|++.....-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-------~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-------APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-------CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-------CCCeEEEecCCCCCHHHHHHHHH
Confidence 578999999999887544322 23578888755444444444443
No 200
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=91.95 E-value=0.72 Score=38.70 Aligned_cols=69 Identities=10% Similarity=-0.026 Sum_probs=47.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
+.+++|++|++.-++.+++.++.. ++++..++|+...........++.+|+|+|.- -. ..+++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv------~e-~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITTDI------SE-MGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEECGG------GG-TTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEECch------hh-cceeeC-CcEE
Confidence 458999999999998888777664 78899999854322222222347899999932 22 455677 7776
Q ss_pred E
Q psy4275 154 V 154 (182)
Q Consensus 154 I 154 (182)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 201
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.80 E-value=0.1 Score=38.94 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.7
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+.++++.||+|+|||..+-.
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45799999999999988643
No 202
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.73 E-value=0.14 Score=35.25 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=16.9
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~ 62 (182)
.|+-+.+.||+|+|||+.+-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356788999999999987543
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.71 E-value=0.13 Score=36.16 Aligned_cols=38 Identities=16% Similarity=-0.081 Sum_probs=26.9
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..|.-.++.|++|+|||..+...+. .. +..++++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL---LS---GKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH---HH---CSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH---Hc---CCcEEEEECC
Confidence 44577889999999999988665555 11 3467777643
No 204
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=91.69 E-value=0.43 Score=37.62 Aligned_cols=55 Identities=15% Similarity=0.011 Sum_probs=40.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEECh
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATP 132 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 132 (182)
+.+++|++|++.-++.+++.++.. ++++..++|+...........+..+|+|+|.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 458999999999999888888765 7889999987543322233345788999983
No 205
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=91.68 E-value=2.3 Score=35.56 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=56.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++..++.+.+.+... ++++..++|+....++...+ .+..+|+|+|.- -. ..+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~------l~-~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL------LR-EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC------CC-TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh------hh-cCccCCC
Confidence 568999999999998888777664 67888888887654443332 246789999822 12 5678888
Q ss_pred ccEEEEeccccc
Q psy4275 150 IKFLVLDEADRL 161 (182)
Q Consensus 150 ~~~iI~DE~h~~ 161 (182)
++++|+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 998888777544
No 206
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.67 E-value=0.13 Score=35.27 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=17.7
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+.+++.|++|+|||+.+-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999865443
No 207
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=91.67 E-value=0.63 Score=45.66 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHh-hh---hhhhCCCcEEEECCCCChHHHHHH
Q psy4275 13 LNPWLIRQCQTIGVKTPTEIQKA-II---PHVLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 13 l~~~i~~~l~~~~~~~~~~~Q~~-~~---~~~~~~~~~li~~~tg~GKT~~~~ 61 (182)
+.+.+.+.+.+.|+. +.+.+.. ++ +.+.-.+.++++||||+|||.++-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 446667777788874 4444433 33 333347789999999999999864
No 208
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.64 E-value=0.14 Score=34.99 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=18.5
Q ss_pred hCCCcEEEECCCCChHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
..++.+++.|++|+|||+.+-..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 34678999999999999986543
No 209
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.56 E-value=0.38 Score=39.53 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc-CCCCeeEEEEcCCH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE-DPYGIFALVLTPTR 84 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~~ 84 (182)
..|.++.|.||+|||.+.-..++..+.. .+...+++++-|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 5799999999999999866555555443 34455677776653
No 210
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.51 E-value=0.14 Score=35.80 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~ 62 (182)
.|+.+.+.||+|+|||+..-.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467789999999999987543
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.51 E-value=0.19 Score=38.11 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=29.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCCHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPTRE 85 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~ 85 (182)
|.-+++.|++|+|||..+...+....... ..+..++|+.-...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 56789999999999998776666543321 11347888876543
No 212
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.44 E-value=0.14 Score=35.81 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.1
Q ss_pred hhCCCcEEEECCCCChHHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..++-++++||+|+|||+.+-..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHH
Confidence 445778999999999999875443
No 213
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.43 E-value=0.14 Score=37.14 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 567999999999999886443
No 214
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.43 E-value=0.53 Score=34.80 Aligned_cols=49 Identities=10% Similarity=-0.053 Sum_probs=30.3
Q ss_pred CHHHHHHHHHCCCCCChHHHHh-hhhhhhCC-----CcEEEECCCCChHHHHHHHHHH
Q psy4275 14 NPWLIRQCQTIGVKTPTEIQKA-IIPHVLND-----EDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 14 ~~~i~~~l~~~~~~~~~~~Q~~-~~~~~~~~-----~~~li~~~tg~GKT~~~~~~~~ 65 (182)
...+.+.|+.-|+ .+.+.. .+..++++ +.+++.||+|+|||..+...+.
T Consensus 72 ~n~i~~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 72 SNRIYKILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp GCHHHHHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3456667765554 354433 23444443 2589999999999998764443
No 215
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.40 E-value=0.13 Score=38.17 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=17.6
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~l 74 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAV 74 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 578999999999999886443
No 216
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.39 E-value=0.14 Score=37.18 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=31.6
Q ss_pred CccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhh--hCCCcEEEECCCCChHHHHHHH
Q psy4275 3 DPIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHV--LNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 3 ~~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~--~~~~~~li~~~tg~GKT~~~~~ 62 (182)
.+-.+|+++.-.+.....+...... +. ....+..+ .-.+++++.||+|+|||..+-.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~--~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH-HH--CHHHHHHTTCCCCSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HH--CHHHHHHcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 3456788886666665555432110 00 01122221 1134589999999999987543
No 217
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.34 E-value=0.33 Score=39.35 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhcc-CCCCeeEEEEcCC
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCE-DPYGIFALVLTPT 83 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~ 83 (182)
++.|.++.|+||+|||.+.-..+...+.. .+...+++++-|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 36799999999999999855544444333 2233445554443
No 218
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.29 E-value=1.1 Score=35.60 Aligned_cols=69 Identities=10% Similarity=-0.020 Sum_probs=48.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEChHHHHHHHhcCCCCCCCCccEE
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATPGRLADHLDTCNTFSLNRIKFL 153 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~i 153 (182)
+.++||.+|++.-++.+++.++.. ++++..++++.........-.+..+|+|+|.- -. ..++++. ++|
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT~v------~~-~GiDip~-~~V 255 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDI------SE-MGANFRA-GRV 255 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEECGG------GG-SSCCCCC-SEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEECCH------HH-hCcCCCC-CEE
Confidence 348999999999999888887654 67888888876643333333457899999932 23 4556776 665
Q ss_pred E
Q psy4275 154 V 154 (182)
Q Consensus 154 I 154 (182)
|
T Consensus 256 I 256 (451)
T 2jlq_A 256 I 256 (451)
T ss_dssp E
T ss_pred E
Confidence 5
No 219
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.27 E-value=0.15 Score=39.43 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.2
Q ss_pred hhCCCcEEEECCCCChHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~ 60 (182)
+..|..+.+.||||+|||+..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 455889999999999999874
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.23 E-value=0.12 Score=35.23 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=16.2
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+..+++.|++|+|||+++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34678999999999998644
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.17 E-value=0.16 Score=35.77 Aligned_cols=22 Identities=14% Similarity=-0.003 Sum_probs=17.3
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.|+-+++.||+|+|||+.+-..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 3667889999999999885433
No 222
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.11 E-value=0.45 Score=35.71 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=17.1
Q ss_pred CCCcEEEECCCCChHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~ 61 (182)
.+.++++.|++|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 36789999999999998863
No 223
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.05 E-value=0.2 Score=38.54 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=30.0
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
+..|.-+++.|++|+|||..++..+...... +..++|+....
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~ 99 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEH 99 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 3446778999999999999877666555433 44678877543
No 224
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.04 E-value=0.16 Score=35.35 Aligned_cols=22 Identities=14% Similarity=-0.032 Sum_probs=17.6
Q ss_pred hCCCcEEEECCCCChHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~ 62 (182)
..|..+.+.||+|+|||+.+-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3466788999999999988543
No 225
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.01 E-value=0.17 Score=35.25 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=16.9
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~ 62 (182)
.|.-+.+.||+|+|||+.+-.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 466788999999999987543
No 226
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.00 E-value=0.11 Score=35.69 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=17.7
Q ss_pred hhCCCcEEEECCCCChHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~ 61 (182)
+..|..+.+.||+|+|||+.+-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 3456778899999999998753
No 227
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=90.99 E-value=0.28 Score=37.55 Aligned_cols=42 Identities=10% Similarity=-0.085 Sum_probs=29.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCC---CCeeEEEEcCCH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDP---YGIFALVLTPTR 84 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~ 84 (182)
|.-+++.|++|+|||..+...+........ .+..++|+....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 456889999999999987766665433211 245788887655
No 228
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.97 E-value=0.3 Score=43.60 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=57.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|++++..-++.+++.++.... +.++..++|+.+..++...+ .++.+|+|+|. +-. ..+++++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e-~GiDip~ 882 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIE-TGIDIPT 882 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTG-GGSCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cce-eeecccC
Confidence 56899999999988888888887643 57788999988765443332 34789999994 122 4568888
Q ss_pred ccEEEEecccc
Q psy4275 150 IKFLVLDEADR 160 (182)
Q Consensus 150 ~~~iI~DE~h~ 160 (182)
++++|+..++.
T Consensus 883 v~~VIi~~~~~ 893 (1151)
T 2eyq_A 883 ANTIIIERADH 893 (1151)
T ss_dssp EEEEEETTTTS
T ss_pred CcEEEEeCCCC
Confidence 99888876654
No 229
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.96 E-value=0.13 Score=39.33 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
++++++.||+|+|||..+-...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999864443
No 230
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.96 E-value=0.23 Score=38.31 Aligned_cols=42 Identities=17% Similarity=-0.014 Sum_probs=30.4
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
+..+.-+++.|++|+|||..++..+...... +.+++|+....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 3446789999999999999877666655433 44688887643
No 231
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.91 E-value=0.19 Score=33.89 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=16.6
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+..+.+.|++|+|||+.+-.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999988643
No 232
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.90 E-value=0.12 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.125 Sum_probs=15.6
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4688999999999986544
No 233
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.87 E-value=0.63 Score=45.03 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=31.8
Q ss_pred CHHHHHHHHHCCCCCChHHHHh----hhhhhhCCCcEEEECCCCChHHHHHHH
Q psy4275 14 NPWLIRQCQTIGVKTPTEIQKA----IIPHVLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 14 ~~~i~~~l~~~~~~~~~~~Q~~----~~~~~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
.+.+.+.+.+.++. +.+.+.. .+..+..++.++++||||+|||.++-.
T Consensus 891 ~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 891 VQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 34566666677764 4444422 233344478899999999999998643
No 234
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.82 E-value=0.34 Score=37.56 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.8
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 478999999999999886544
No 235
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=90.73 E-value=0.24 Score=34.94 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=17.8
Q ss_pred cEEEECCCCChHHHHHHHHHHHh
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
-.+++|++|+|||..+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 36899999999999876555444
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.72 E-value=0.28 Score=36.75 Aligned_cols=37 Identities=22% Similarity=0.115 Sum_probs=23.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++.+.+.|++|+|||+.+...+......+ |.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~--G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEK--HKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTT--CCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCEEEEEe
Confidence 55788889999999988654443332222 34566554
No 237
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.65 E-value=0.26 Score=36.60 Aligned_cols=42 Identities=17% Similarity=-0.022 Sum_probs=27.8
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.+..|.-+++.|++|+|||+.+...+......+ +..++++..
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~--G~~v~~~~~ 72 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM--GKKVGLAML 72 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS--CCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc--CCeEEEEeC
Confidence 345578889999999999988655554443332 325666643
No 238
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.64 E-value=0.26 Score=35.30 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=22.2
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
.+..|.-+.+.||+|+|||+.+...+...+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999988655543333
No 239
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=90.63 E-value=0.91 Score=34.19 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=48.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.+++..-++.+++.++.. +..+..++|+.+...+...+ .+..+|+|+|.-.- ..+++++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~-------~Gid~~~ 306 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMS-------RGIDVND 306 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHH-------HHCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhh-------cCCCccc
Confidence 557999999999998888887764 67888999987765443322 24678999994211 2234555
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 307 ~~~Vi~ 312 (367)
T 1hv8_A 307 LNCVIN 312 (367)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 665554
No 240
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.60 E-value=0.16 Score=39.00 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=17.4
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
++.+++.||||+|||..+...+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999865444
No 241
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.58 E-value=0.17 Score=36.73 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 45 ~~~vll~G~~GtGKT~la~~l 65 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAI 65 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHH
Confidence 457999999999999875433
No 242
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.48 E-value=0.18 Score=38.26 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=32.9
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHH-hhhhh-hhCCCcEEEECCCCChHHHHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQK-AIIPH-VLNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~-~~~~~-~~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+--+|++++=-+.+.+.+...-. .|... +.+.. ....+++++.||+|+|||..+-..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHH
Confidence 44578888766666666643210 11110 11111 1224689999999999998864443
No 243
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.48 E-value=0.27 Score=37.24 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.4
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
.++++.||+|+|||..+-..
T Consensus 59 ~~~ll~G~~G~GKT~la~~l 78 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILAL 78 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 57999999999999875433
No 244
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.46 E-value=0.38 Score=36.96 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=17.7
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++++.||+|+|||..+-..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 4579999999999998864443
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.39 E-value=0.16 Score=39.30 Aligned_cols=43 Identities=19% Similarity=0.030 Sum_probs=29.4
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
..|.-+++.||+|+|||..+...+...... +.+++|+......
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~ 101 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHAL 101 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeccccc
Confidence 335678899999999998866555544332 4468888765443
No 246
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.27 E-value=0.17 Score=35.84 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=17.6
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
++.+++.||||+|||..++-.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 6678999999999998764443
No 247
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.25 E-value=0.22 Score=34.28 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=17.8
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+..+++.|++|+|||+++-...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999999865443
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.18 E-value=0.2 Score=36.94 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=29.8
Q ss_pred ccCCccCCCCCHHHHHHHHHCCCCCChHHHHhhhhhh--hCCCcEEEECCCCChHHHHHH
Q psy4275 4 PIKSFTDLKLNPWLIRQCQTIGVKTPTEIQKAIIPHV--LNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 4 ~~~~~~~~~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~--~~~~~~li~~~tg~GKT~~~~ 61 (182)
+-.+|+++.-.+...+.+...... +. ....+..+ .-.+++++.||+|+|||..+-
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~--~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LK--NPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HH--CHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HH--CHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 445677776666665555432110 00 01122221 113458999999999998754
No 249
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.13 E-value=0.19 Score=39.99 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=17.8
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
++++++.||+|+|||..+....
T Consensus 63 ~~~iLl~GppGtGKT~la~ala 84 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIA 84 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHH
Confidence 4689999999999998865443
No 250
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.10 E-value=0.17 Score=37.73 Aligned_cols=21 Identities=19% Similarity=0.061 Sum_probs=16.5
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
+.+++.||+|+|||..+-..+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 568889999999998864433
No 251
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.09 E-value=0.35 Score=34.87 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=19.1
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
++++.++.|+|||..++........
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 6888899999999997655555443
No 252
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.08 E-value=0.41 Score=33.63 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=15.7
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.||+|+|||..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999875433
No 253
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.90 E-value=0.55 Score=37.31 Aligned_cols=42 Identities=10% Similarity=-0.147 Sum_probs=31.5
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
-+..|.-+++.|++|+|||..++-.+.+...+ +..++|+.-.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 34557789999999999999877777666554 4578888744
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.90 E-value=0.13 Score=35.06 Aligned_cols=21 Identities=19% Similarity=0.071 Sum_probs=17.2
Q ss_pred hCCCcEEEECCCCChHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~ 61 (182)
..|.-+.+.||+|+|||+.+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 346678899999999998865
No 255
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=89.81 E-value=0.075 Score=44.14 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=27.7
Q ss_pred HhcCCCcEEEEChHHHHHHH-hcC----CCCCCCCccEEEEeccccccc
Q psy4275 120 ELAKKPHIVIATPGRLADHL-DTC----NTFSLNRIKFLVLDEADRLSL 163 (182)
Q Consensus 120 ~~~~~~~Ilv~T~~~l~~~~-~~~----~~~~~~~~~~iI~DE~h~~~~ 163 (182)
.....++|+|++...+++-. +.. -.+. ..-..+||||||++.+
T Consensus 171 ~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~-p~~~ivI~DEAHNL~d 218 (620)
T 4a15_A 171 AALPDADIVIAPYAYFLNRSVAEKFLSHWGVS-RNQIVIILDEAHNLPD 218 (620)
T ss_dssp HHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCC-GGGEEEEETTGGGHHH
T ss_pred HHhhcCCEEEeCchhhcCHHHHHHHHHhhccC-cCCeEEEEECCCchHH
Confidence 34457899999998765432 110 0112 2345899999999976
No 256
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.76 E-value=0.65 Score=37.56 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=17.8
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~ 65 (182)
+.+++.||+|+|||..+...+-
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999998654433
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.73 E-value=0.28 Score=34.89 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=17.0
Q ss_pred hhCCCcEEEECCCCChHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~ 61 (182)
+..|+-+.+.||+|+|||+..-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3457788999999999998753
No 258
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.71 E-value=0.23 Score=36.28 Aligned_cols=20 Identities=25% Similarity=-0.087 Sum_probs=15.8
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++.||+|+|||+.+...+
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36789999999999865443
No 259
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.65 E-value=0.34 Score=36.89 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=17.7
Q ss_pred hhCCCcEEEECCCCChHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~ 60 (182)
+..|..+.+.||||+|||+..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 345889999999999999863
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=89.43 E-value=0.25 Score=33.17 Aligned_cols=19 Identities=16% Similarity=-0.286 Sum_probs=15.4
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4688999999999986543
No 261
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.41 E-value=0.14 Score=37.33 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=17.5
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++++.||+|+|||..+-...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la 65 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVA 65 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 4578999999999998865443
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.41 E-value=0.2 Score=38.83 Aligned_cols=21 Identities=29% Similarity=0.222 Sum_probs=17.3
Q ss_pred hCCCcEEEECCCCChHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~ 61 (182)
..+..+++.||||+|||+..-
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 446788999999999998743
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.39 E-value=0.29 Score=33.67 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=14.6
Q ss_pred CcEEEECCCCChHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~ 61 (182)
+-+.+.||+|+|||+..-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 346789999999998753
No 264
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.23 E-value=0.2 Score=34.22 Aligned_cols=21 Identities=19% Similarity=0.129 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 4 g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456889999999999986544
No 265
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.18 E-value=0.29 Score=33.45 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=16.2
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+..+++.|++|+|||+.+-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999988543
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.12 E-value=0.3 Score=34.88 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=17.5
Q ss_pred hhCCCcEEEECCCCChHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
+..|.-+.+.||+|+|||+..-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 45577889999999999987543
No 267
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.06 E-value=0.36 Score=37.37 Aligned_cols=43 Identities=12% Similarity=-0.041 Sum_probs=30.2
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
+..+.-+++.|++|+|||..++..+...... +..++|+.....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s 113 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHA 113 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCC
Confidence 3446778999999999999877666554433 346788776543
No 268
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.03 E-value=0.27 Score=37.39 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=16.3
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
+-+++.||||+|||..+...+
T Consensus 4 ~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHH
Confidence 346789999999998865444
No 269
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.01 E-value=1.5 Score=30.17 Aligned_cols=31 Identities=29% Similarity=0.141 Sum_probs=20.3
Q ss_pred ECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 49 CAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 49 ~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
.+.-|.|||+.+...+...... +.+++++-.
T Consensus 8 s~kgG~GKTt~a~~la~~la~~---g~~vlliD~ 38 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRS---GYNIAVVDT 38 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred eCCCCccHHHHHHHHHHHHHHC---CCeEEEEEC
Confidence 3568899999876555544332 557777753
No 270
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.99 E-value=0.33 Score=34.20 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=17.5
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.++-+++.||+|+|||...-..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L 39 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNAL 39 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHH
Confidence 4677889999999999875433
No 271
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.99 E-value=0.29 Score=33.09 Aligned_cols=19 Identities=21% Similarity=-0.011 Sum_probs=15.3
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 4688999999999986443
No 272
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.95 E-value=0.16 Score=41.94 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=14.9
Q ss_pred cEEEECCCCChHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAF 60 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~ 60 (182)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999875
No 273
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=88.90 E-value=1.5 Score=35.10 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc--------CCchhhhhHH---hc
Q psy4275 54 SGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG--------GMDMVDQGKE---LA 122 (182)
Q Consensus 54 ~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~~ 122 (182)
++|.... .-++........+.++||.++++..++.+++.++......++++..++| +.+..++... ..
T Consensus 370 ~~k~~~l-~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRDL-YLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHHH-HHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHHH-HHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 4565443 3333333322235689999999999999999998765433445555544 4333332222 12
Q ss_pred --CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 123 --KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 123 --~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
+..+|+|+|.- -. ..+++..+++||.
T Consensus 449 ~~g~~~vLvaT~~------~~-~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 449 ASGDNNILIATSV------AD-EGIDIAECNLVIL 476 (555)
T ss_dssp ---CCSEEEECCC------TT-CCEETTSCSEEEE
T ss_pred cCCCeeEEEEcch------hh-cCCccccCCEEEE
Confidence 35689999931 12 4567778887765
No 274
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.86 E-value=0.31 Score=33.94 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=17.5
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+..+.+.|++|+|||+.+-..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L 49 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGV 49 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3667889999999999885433
No 275
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.82 E-value=0.29 Score=37.15 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
.++++.||+|+|||..+-..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 679999999999998754443
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.77 E-value=0.29 Score=37.14 Aligned_cols=20 Identities=25% Similarity=-0.019 Sum_probs=16.0
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
-+++.||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 46789999999998865444
No 277
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.74 E-value=0.29 Score=37.57 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=17.9
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++++.||+|+|||..+-...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5689999999999998865443
No 278
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=88.72 E-value=2.3 Score=36.32 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=52.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhh-------ccCCceEEEEEcCCchhhhhHHhc---------CCCcEEEEChHHHHH
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLG-------KVMNLRVSIITGGMDMVDQGKELA---------KKPHIVIATPGRLAD 137 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~Ilv~T~~~l~~ 137 (182)
++++||.+|++.-++.+++.++... ...++.+..++|+.+..++..... +..+|+|+|.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 5589999999999999888887532 224788999999987665554432 24579999943
Q ss_pred HHhcCCCCCCCCccEEE
Q psy4275 138 HLDTCNTFSLNRIKFLV 154 (182)
Q Consensus 138 ~~~~~~~~~~~~~~~iI 154 (182)
.. ..+++..+++||
T Consensus 379 --ae-~GidIp~v~~VI 392 (773)
T 2xau_A 379 --AE-TSLTIDGIVYVV 392 (773)
T ss_dssp --HH-HTCCCTTEEEEE
T ss_pred --HH-hCcCcCCeEEEE
Confidence 22 345677887655
No 279
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.64 E-value=0.34 Score=33.99 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=17.2
Q ss_pred hhhCCCcEEEECCCCChHHHHHH
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~ 61 (182)
.+..|+-+.+.||+|+|||+..-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 45668888999999999998753
No 280
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.63 E-value=0.27 Score=36.55 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=16.0
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
.++++.||+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4789999999999988643
No 281
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.55 E-value=0.32 Score=33.74 Aligned_cols=22 Identities=18% Similarity=-0.097 Sum_probs=17.5
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+..+++.|+.|+|||+.+-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L 24 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNI 24 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 3567899999999999986433
No 282
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.50 E-value=0.81 Score=35.03 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=32.3
Q ss_pred hhhhhhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 35 AIIPHVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 35 ~~~~~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
....-+..|.-+++.|++|.|||..++-.+...... +..++|+...
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE 83 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE 83 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC
Confidence 333345557789999999999999877666655442 4577777653
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.48 E-value=0.3 Score=33.08 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.4
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+..+.+.|++|+|||+.+-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45688999999999988644
No 284
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.46 E-value=0.33 Score=33.34 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=18.1
Q ss_pred hCCCcEEEECCCCChHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.++..+++.|++|+|||+.+-..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999986443
No 285
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.40 E-value=0.29 Score=34.10 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=15.4
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
+-++++||+|+|||...-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4578999999999987533
No 286
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.39 E-value=0.49 Score=35.67 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=22.3
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+-+.+.|++|+|||+.+...+.... .. +.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~-~~--g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFV-DE--GKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-HT--TCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHH-hc--CCEEEEEc
Confidence 4577889999999987654443322 22 44666654
No 287
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.26 E-value=0.35 Score=32.48 Aligned_cols=21 Identities=19% Similarity=-0.005 Sum_probs=17.0
Q ss_pred CcEEEECCCCChHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~ 64 (182)
+++++.|+.|+|||+++-...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999999875443
No 288
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.19 E-value=0.33 Score=36.98 Aligned_cols=43 Identities=12% Similarity=-0.093 Sum_probs=31.0
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
.| -+++.||+|+|||..++-.+.....+.+ +.+++|+....++
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYP-DAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCT-TCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEeccchh
Confidence 35 5789999999999987776666543311 4578998876665
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.16 E-value=0.47 Score=40.68 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=33.7
Q ss_pred cCCccCCCCCHHHHHHHHHCC-CCCChHHHHhhhhhhhCCCcEEEECCCCChHHHHHHHHH
Q psy4275 5 IKSFTDLKLNPWLIRQCQTIG-VKTPTEIQKAIIPHVLNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 5 ~~~~~~~~l~~~i~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.-+|++++--+++.+.+.+.- +.-.+|.+...+ .+...+.+++.||+|+|||+.+-..+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lAkaiA 532 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIA 532 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHHHHHH
Confidence 346777776777777776542 111111111100 11224679999999999998764433
No 290
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=88.12 E-value=6 Score=31.48 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=53.4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCCc
Q psy4275 75 IFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNRI 150 (182)
Q Consensus 75 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~ 150 (182)
.+.+++.....-+..+++.+.. .+.++..++|+.+...+...+ .++.+|+|+|+..+. ..++++++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~----~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKN----EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKNL 417 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHT----TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCSE
T ss_pred CCeEEEEecHHHHHHHHHHHHH----cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------cccccccC
Confidence 3444555555555555555544 345888999988755433222 346789999977663 23467788
Q ss_pred cEEEEeccccccccCChhHHHHHHHH
Q psy4275 151 KFLVLDEADRLSLMTSLKFFFFFFFL 176 (182)
Q Consensus 151 ~~iI~DE~h~~~~~~~~~~~~~~~~~ 176 (182)
+++|+.+.. ++...+.-...|.
T Consensus 418 ~~vi~~~~~----~s~~~~~Q~~GR~ 439 (510)
T 2oca_A 418 HHVVLAHGV----KSKIIVLQTIGRV 439 (510)
T ss_dssp EEEEESSCC----CSCCHHHHHHHHH
T ss_pred cEEEEeCCC----CCHHHHHHHHhcc
Confidence 888887766 2444444444444
No 291
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=88.11 E-value=0.47 Score=36.59 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=42.7
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.++||.++++.-++.+++.++.. ++.+..++|+.....+...+ .+..+|+|+|.- -. ..+++..
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~-~Gidip~ 348 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL------LA-RGIDVQQ 348 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSS------CC---CCGGG
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc------cc-cCCCccC
Confidence 457999999999988887777653 67888889887765443332 235689999932 11 3456666
Q ss_pred ccEEEE
Q psy4275 150 IKFLVL 155 (182)
Q Consensus 150 ~~~iI~ 155 (182)
++++|.
T Consensus 349 v~~Vi~ 354 (414)
T 3eiq_A 349 VSLVIN 354 (414)
T ss_dssp CSCEEE
T ss_pred CCEEEE
Confidence 666654
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.06 E-value=0.62 Score=31.86 Aligned_cols=21 Identities=24% Similarity=-0.012 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHH
Confidence 557889999999999886443
No 293
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.01 E-value=0.71 Score=34.74 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=22.4
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+..+.+.||+|+|||+..-..+... ... ++++.+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll-~~~--~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY-QNL--GKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH-HTT--TCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hhc--CCEEEEEe
Confidence 4567788999999998754333222 222 44666665
No 294
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.88 E-value=0.35 Score=36.83 Aligned_cols=22 Identities=18% Similarity=-0.094 Sum_probs=17.2
Q ss_pred CcEEEECCCCChHHHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~ 65 (182)
+.+++.||||+|||..+...+-
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999998654443
No 295
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.60 E-value=0.35 Score=38.41 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=17.7
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++++.||+|+|||..+-...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998864333
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.54 E-value=0.45 Score=32.22 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=16.2
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++.|++|+|||+.+-...
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58899999999999865443
No 297
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.54 E-value=0.83 Score=33.83 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.9
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
+.++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l 58 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIAL 58 (319)
T ss_dssp CEEEESSSSSSHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHH
Confidence 6999999999999875443
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=87.54 E-value=0.37 Score=33.54 Aligned_cols=21 Identities=19% Similarity=0.047 Sum_probs=17.0
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~ 62 (182)
.+..+.+.|++|+|||+.+-.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 366788899999999988543
No 299
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.43 E-value=0.61 Score=35.35 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.2
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
+.++.||+|+|||..+...+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48999999999998865443
No 300
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.42 E-value=0.62 Score=35.02 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=22.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+.-+.+.||+|+|||+..-..+-. +... ++++.+..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~-l~~~--~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR-LKNE--GTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH-HHHT--TCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH-HHHc--CCeEEEEe
Confidence 456778999999999875433222 2222 44666665
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.41 E-value=0.44 Score=33.09 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=16.4
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..+++.|++|+|||+.+-..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46899999999999986443
No 302
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.33 E-value=0.64 Score=35.24 Aligned_cols=36 Identities=22% Similarity=0.071 Sum_probs=23.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++-+.+.+++|+|||+.+...+.... .. +.+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~-~~--g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA-EL--GYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH-HT--TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HC--CCeEEEEe
Confidence 34577889999999988654443322 22 45677664
No 303
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=87.29 E-value=0.31 Score=33.38 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=16.6
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456789999999999986443
No 304
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=87.23 E-value=0.23 Score=37.63 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=17.2
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
..++++.||+|+|||..+-..
T Consensus 45 ~~~vLl~G~~GtGKT~la~~l 65 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRAL 65 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHH
Confidence 457999999999999886433
No 305
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.15 E-value=0.31 Score=33.49 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=15.6
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
.-+.+.||+|+|||+.+-..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 34678999999999876444
No 306
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.14 E-value=1.2 Score=36.82 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=19.9
Q ss_pred hhhhCCCcEEEECCCCChHHHHHH
Q psy4275 38 PHVLNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 38 ~~~~~~~~~li~~~tg~GKT~~~~ 61 (182)
..+..+.++++.||+|+|||+.+-
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHHH
Confidence 345568899999999999998863
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=87.10 E-value=0.52 Score=32.14 Aligned_cols=20 Identities=20% Similarity=0.092 Sum_probs=16.1
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..+++.|++|+|||+++-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 45789999999999986443
No 308
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.07 E-value=0.25 Score=34.53 Aligned_cols=25 Identities=20% Similarity=-0.210 Sum_probs=18.4
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHH
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+..+.-+.+.|++|+|||+.+-..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHH
Confidence 3444566789999999999886443
No 309
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.06 E-value=0.47 Score=36.41 Aligned_cols=41 Identities=12% Similarity=-0.064 Sum_probs=26.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhcc--C-CCCeeEEEEcCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCE--D-PYGIFALVLTPT 83 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~--~-~~~~~~lil~p~ 83 (182)
|.-+.+.||+|+|||..+...+...... . ..+.+++++.-.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 4568889999999998866555443211 1 113477777654
No 310
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.04 E-value=0.38 Score=38.42 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.0
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
.++.++.||+|+|||..+-...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 5689999999999999865433
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=87.01 E-value=0.25 Score=35.28 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=14.0
Q ss_pred hhCCCcEEEECCCCChHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
+..|.-+.+.||+|+|||+.+-.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EECCCEEEEECSCC----CHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 34477788999999999987543
No 312
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.92 E-value=0.42 Score=36.67 Aligned_cols=21 Identities=24% Similarity=-0.064 Sum_probs=16.5
Q ss_pred cEEEECCCCChHHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~ 65 (182)
-+++.||||+|||..+...+-
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 578999999999998654443
No 313
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.92 E-value=0.43 Score=32.86 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=17.4
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+..+++.|++|+|||+.+-..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999886433
No 314
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=86.91 E-value=0.5 Score=33.34 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456889999999999886543
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.88 E-value=0.42 Score=33.53 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=15.4
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999986544
No 316
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.87 E-value=0.81 Score=40.39 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=40.9
Q ss_pred cCCccCCC--CCHHHHHHHHHCCCCC--C--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 5 IKSFTDLK--LNPWLIRQCQTIGVKT--P--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 5 ~~~~~~~~--l~~~i~~~l~~~~~~~--~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+.+|.++| .+++..+.+......+ | ...-..++..+.. ++.+++.|.+|+|||.++-..+-+.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yL 168 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYL 168 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHH
Confidence 45677775 4788888886543333 2 3333445555543 5689999999999998865444443
No 317
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.81 E-value=0.43 Score=33.54 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=15.5
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3688999999999986544
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.72 E-value=0.32 Score=34.32 Aligned_cols=44 Identities=11% Similarity=-0.079 Sum_probs=27.3
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPT 83 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 83 (182)
+..|.-+.+.||+|+|||+.+...+....... ..+..++++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 44577889999999999988655444332211 013356666543
No 319
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.67 E-value=0.55 Score=31.52 Aligned_cols=20 Identities=20% Similarity=0.027 Sum_probs=16.1
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
+.+++.|++|+|||+.+-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35789999999999986443
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.33 E-value=0.66 Score=33.47 Aligned_cols=22 Identities=27% Similarity=0.081 Sum_probs=17.6
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
...+++.||+|+|||+.+-...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999865443
No 321
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.22 E-value=0.5 Score=35.64 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=17.3
Q ss_pred hCCCcEEEECCCCChHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~ 61 (182)
..|+.+.+.||+|+|||+..-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 347888999999999998743
No 322
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.12 E-value=0.62 Score=33.99 Aligned_cols=21 Identities=24% Similarity=0.132 Sum_probs=18.1
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+.+.|++|+|||+.+-..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 889999999999999986443
No 323
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.12 E-value=0.61 Score=31.01 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.2
Q ss_pred CcEEEECCCCChHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~ 60 (182)
.-.++.||+|+|||...
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999874
No 324
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.11 E-value=0.55 Score=32.31 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=13.5
Q ss_pred cEEEECCCCChHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAF 60 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~ 60 (182)
.+.+.||+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999874
No 325
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.09 E-value=0.49 Score=33.59 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
...+++.|++|+|||+.+-..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456899999999999986443
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.08 E-value=0.54 Score=32.11 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=15.6
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
..+++.|++|+|||+.+-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999988643
No 327
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=86.04 E-value=1.6 Score=36.35 Aligned_cols=76 Identities=22% Similarity=0.282 Sum_probs=42.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEc--------CCchhhhhHH---h-c-CCCcEEEEChHHHHHHHh
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITG--------GMDMVDQGKE---L-A-KKPHIVIATPGRLADHLD 140 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~---~-~-~~~~Ilv~T~~~l~~~~~ 140 (182)
+.++||.++++.-++.+++.++......++++..++| +.+..++... . . +..+|+|+|.- -
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v------~ 471 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSV------A 471 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEES------S
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEech------h
Confidence 5689999999999999998888764333367776654 4433322222 2 2 35789999921 2
Q ss_pred cCCCCCCCCccEEEEe
Q psy4275 141 TCNTFSLNRIKFLVLD 156 (182)
Q Consensus 141 ~~~~~~~~~~~~iI~D 156 (182)
. ..+++..+++||.=
T Consensus 472 ~-~GiDip~v~~VI~~ 486 (696)
T 2ykg_A 472 D-EGIDIAQCNLVILY 486 (696)
T ss_dssp C-CC---CCCSEEEEE
T ss_pred h-cCCcCccCCEEEEe
Confidence 2 45677788877753
No 328
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.95 E-value=0.48 Score=32.30 Aligned_cols=18 Identities=28% Similarity=0.204 Sum_probs=14.8
Q ss_pred cEEEECCCCChHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~ 62 (182)
.+++.|++|+|||+.+-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999988643
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.93 E-value=0.47 Score=35.30 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=16.6
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.||+|+|||+.+-..
T Consensus 33 ~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346889999999999986443
No 330
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.85 E-value=0.61 Score=37.52 Aligned_cols=42 Identities=12% Similarity=-0.126 Sum_probs=30.5
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCC
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPT 83 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 83 (182)
+..|.-+++.|++|+|||..++-.+.+...+. +..++++.-.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEecc
Confidence 44577889999999999998777766655442 3467777654
No 331
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.81 E-value=0.55 Score=31.95 Aligned_cols=17 Identities=24% Similarity=0.024 Sum_probs=14.4
Q ss_pred cEEEECCCCChHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~ 61 (182)
-.++.||+|+|||...-
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 57889999999998753
No 332
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.71 E-value=0.56 Score=33.12 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
...+++.|++|+|||+.+-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 356899999999999986543
No 333
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.71 E-value=0.56 Score=31.88 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=16.2
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
|..+.+.|++|+|||+.+-.
T Consensus 5 g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 55678999999999987543
No 334
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.57 E-value=0.53 Score=33.05 Aligned_cols=31 Identities=10% Similarity=-0.033 Sum_probs=21.3
Q ss_pred HHHHhhhhhhhCCCcEEEECCCCChHHHHHHH
Q psy4275 31 EIQKAIIPHVLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 31 ~~Q~~~~~~~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
+.+.... ....+..+++.|++|+|||+.+-.
T Consensus 14 ~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 14 RSERTEL-RNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp HHHHHHH-HTSSCEEEEEECSTTSSHHHHHHH
T ss_pred HHHhhcc-cCCCCCEEEEECCCCCCHHHHHHH
Confidence 3444442 344567788999999999987643
No 335
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=85.53 E-value=1.5 Score=34.79 Aligned_cols=54 Identities=11% Similarity=-0.037 Sum_probs=39.1
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEEC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIAT 131 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T 131 (182)
+.++||.+|++.-++.+++.++.. ++++..+++..........-.+..+|+|+|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHHHHhhccCCCceEEEEC
Confidence 458999999999999888888765 778888888643222222223467899999
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.50 E-value=0.61 Score=32.89 Aligned_cols=20 Identities=15% Similarity=-0.036 Sum_probs=15.9
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..+.+.||+|+|||+.+-..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45788999999999876543
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.37 E-value=0.55 Score=32.61 Aligned_cols=21 Identities=24% Similarity=0.007 Sum_probs=16.7
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 456789999999999986443
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=85.33 E-value=0.53 Score=32.08 Aligned_cols=20 Identities=25% Similarity=0.097 Sum_probs=15.9
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..+++.|++|+|||+.+-..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35788999999999986443
No 339
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.33 E-value=0.64 Score=33.18 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=17.6
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
...+++.|++|+|||+.+-...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999865443
No 340
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=85.32 E-value=0.46 Score=39.64 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=44.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHh--hccCCceEEEEEcC--------CchhhhhHHh----cCCCcEEEEChHHHHHHH
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVL--GKVMNLRVSIITGG--------MDMVDQGKEL----AKKPHIVIATPGRLADHL 139 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~ 139 (182)
+.++||.++++..++.+++.++.. ....|+++..++|+ .+..++...+ .+..+|+|+|.-
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~------ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV------ 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS------
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc------
Confidence 568999999999999998888764 33346888889988 5544433322 235678888831
Q ss_pred hcCCCCCCCCccEEE
Q psy4275 140 DTCNTFSLNRIKFLV 154 (182)
Q Consensus 140 ~~~~~~~~~~~~~iI 154 (182)
-. ..+++..+++||
T Consensus 474 ~~-~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AE-EGLDIKECNIVI 487 (699)
T ss_dssp CC-TTSCCCSCCCCE
T ss_pred cc-cCCccccCCEEE
Confidence 11 345566666555
No 341
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.27 E-value=0.73 Score=36.11 Aligned_cols=41 Identities=7% Similarity=-0.214 Sum_probs=27.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccC---CCCeeEEEEcCC
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCED---PYGIFALVLTPT 83 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 83 (182)
|.-+.+.||+|+|||..+...++...... ..+..++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 56788999999999998765555544321 124467887654
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.24 E-value=0.66 Score=32.14 Aligned_cols=20 Identities=15% Similarity=0.051 Sum_probs=16.2
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..+++.|++|+|||+.+-..
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999986443
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.16 E-value=0.59 Score=32.53 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=17.6
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+..+++.|+.|+|||+.+-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 3567889999999999986443
No 344
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.15 E-value=0.91 Score=35.05 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=22.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+.-+.+.||+|+|||+..-..+- .+... ++++.+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag-~l~~~--~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH-RLKNE--GTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH-HHHHT--TCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHh-hcccc--CCEEEEec
Confidence 44677899999999987533322 22222 44666665
No 345
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=85.11 E-value=0.63 Score=37.05 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.9
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
.+++++.||+|+|||..+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~ 69 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARR 69 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46899999999999988643
No 346
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=85.09 E-value=0.66 Score=35.85 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=16.0
Q ss_pred hhhhCCCc--EEEECCCCChHHHHH
Q psy4275 38 PHVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
..+++|.| ++..|.||+|||.+.
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 33445654 555679999999885
No 347
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.02 E-value=0.98 Score=34.37 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=22.1
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+.-+.+.||+|+|||+..-..+-. +... ++++.+..
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~-l~~~--~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW-LKNH--GFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHHT--TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHhc--CCEEEEEe
Confidence 456788899999999875333322 2222 34565554
No 348
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.99 E-value=0.65 Score=32.01 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=15.2
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 3678999999999986443
No 349
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.92 E-value=0.6 Score=37.61 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=17.4
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 238 ~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHH
Confidence 467999999999999986443
No 350
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=84.91 E-value=0.79 Score=31.86 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.2
Q ss_pred CCcEEEECCCCChHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~ 61 (182)
|..+.+.||+|+|||+..-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3457889999999998753
No 351
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.88 E-value=0.56 Score=33.48 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=18.1
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+.+.+-+++.||+|+||++.+-...
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3344567788999999998765443
No 352
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.83 E-value=1.3 Score=37.64 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.0
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
..+.++.||+|+|||..+-...
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 5689999999999999864443
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.77 E-value=0.62 Score=32.46 Aligned_cols=22 Identities=9% Similarity=-0.120 Sum_probs=17.5
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
++..+++.|+.|+|||+.+-..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L 29 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKL 29 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567889999999999986443
No 354
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=84.70 E-value=0.54 Score=36.94 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=15.8
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
-+++.||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 46789999999998865444
No 355
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.69 E-value=0.59 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=15.1
Q ss_pred CCcEEEECCCCChHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~ 60 (182)
+.-+.+.||+|+|||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 556778899999999875
No 356
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=84.67 E-value=0.47 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.|.-+.+.||+|+|||+.. -++..+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl--~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTML--NIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH--HHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHH--HHHhcCC
Confidence 4778889999999999763 3444433
No 357
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.66 E-value=0.66 Score=32.25 Aligned_cols=19 Identities=32% Similarity=0.041 Sum_probs=14.9
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+.+.|++|+|||+.+-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3578899999999886443
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.52 E-value=0.69 Score=32.05 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=15.3
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
..+++.|++|+|||+.+-.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3578899999999988643
No 359
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.41 E-value=0.7 Score=31.67 Aligned_cols=17 Identities=29% Similarity=0.235 Sum_probs=14.3
Q ss_pred EEEECCCCChHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~ 62 (182)
+++.|+.|+|||+.+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999998644
No 360
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=84.27 E-value=0.76 Score=30.67 Aligned_cols=19 Identities=21% Similarity=-0.052 Sum_probs=15.2
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 3688999999999886443
No 361
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=84.26 E-value=0.72 Score=31.48 Aligned_cols=18 Identities=28% Similarity=0.017 Sum_probs=14.6
Q ss_pred EEEECCCCChHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~ 63 (182)
+++.|+.|+|||+.+-..
T Consensus 3 I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999986433
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.15 E-value=0.6 Score=32.78 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=15.7
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++.|++|+|||+.+-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999998865443
No 363
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=84.05 E-value=0.89 Score=34.60 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=16.0
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+.+|.| ++..|+||+|||.+.
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCeEEEEEECCCCCCCceEe
Confidence 3445655 555689999999985
No 364
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=84.04 E-value=0.62 Score=32.52 Aligned_cols=19 Identities=26% Similarity=-0.088 Sum_probs=15.1
Q ss_pred CCcEEEECCCCChHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~ 61 (182)
+.-+.+.||+|+|||+.+-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4456788999999998753
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.99 E-value=0.81 Score=36.26 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=23.6
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
..+++.|++|+|||+.+...+.....+ +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 368889999999998865544443322 44677665
No 366
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.97 E-value=0.67 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.024 Sum_probs=16.7
Q ss_pred CCcEEEECCCCChHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~ 61 (182)
+.++++.||+|+|||..+-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999998854
No 367
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.95 E-value=0.55 Score=34.26 Aligned_cols=20 Identities=20% Similarity=-0.075 Sum_probs=16.1
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..++++|++|+|||+.+-..
T Consensus 5 ~lIvl~G~pGSGKSTla~~L 24 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNL 24 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999986443
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=83.87 E-value=0.8 Score=32.93 Aligned_cols=20 Identities=20% Similarity=0.062 Sum_probs=16.4
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
...+.+.||+|+|||+.+-.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45788999999999987543
No 369
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=83.79 E-value=1.1 Score=38.32 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=38.9
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--C--ChHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--T--PTEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~--~~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+.+|..++ .++++.+.+...... . +...-..++..+.. ++.+++.|.+|+|||.++-..+-+.
T Consensus 125 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yl 195 (783)
T 4db1_A 125 VNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYF 195 (783)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhh
Confidence 44566666 366777777543222 2 23334455555543 5689999999999998865544433
No 370
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=83.72 E-value=1 Score=34.56 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=17.3
Q ss_pred hhhhhCCCc--EEEECCCCChHHHHHH
Q psy4275 37 IPHVLNDED--CIGCAKTGSGKTLAFA 61 (182)
Q Consensus 37 ~~~~~~~~~--~li~~~tg~GKT~~~~ 61 (182)
+..+.+|.| ++..|+||+|||..+.
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 334455665 4556899999998863
No 371
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=83.70 E-value=1.5 Score=32.30 Aligned_cols=42 Identities=10% Similarity=-0.077 Sum_probs=28.2
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
.|...++.+++|+|||+.++-.+.+.+.+ +-+++|++-....
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~---Ge~~~~~~~~e~~ 61 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKS---DNLVGMFSISYPL 61 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHT---TCEEEEEECSSCH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHC---CCcEEEEEEeCCH
Confidence 35678888888888886655566665544 4577887754433
No 372
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=83.64 E-value=1.4 Score=38.83 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=38.8
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCCC--C--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVKT--P--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~~--~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
+.+|..++ .++++.+.+......+ | ...=..++..+.. +..+++.|.+|+|||.+.-..+-+
T Consensus 126 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~y 195 (1010)
T 1g8x_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQY 195 (1010)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHH
Confidence 45667776 4677777776543332 3 2233445555443 568999999999999875544433
No 373
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.58 E-value=0.72 Score=31.98 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=14.7
Q ss_pred cEEEECCCCChHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~ 62 (182)
.+.+.|++|+|||+.+-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 467899999999988643
No 374
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=83.56 E-value=0.8 Score=35.16 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=14.9
Q ss_pred hCCCc--EEEECCCCChHHHHH
Q psy4275 41 LNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 41 ~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+|.| ++..|+||+|||.++
T Consensus 91 l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 91 LEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHTCCEEEEEESSTTSSHHHHH
T ss_pred hCCCceEEEEecCCCCCCCeEE
Confidence 44554 456689999999985
No 375
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=83.55 E-value=1 Score=37.93 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=39.3
Q ss_pred cCCccCCCC-CHHHHHHHHHCCCC--CC--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 5 IKSFTDLKL-NPWLIRQCQTIGVK--TP--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 5 ~~~~~~~~l-~~~i~~~l~~~~~~--~~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+.+|..+++ +++..+.+...... .| ...-..++..+.. ++.+++.|++|+|||...-..+-+..
T Consensus 48 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla 119 (697)
T 1lkx_A 48 TNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLT 119 (697)
T ss_dssp ECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHH
Confidence 456677764 67777776543222 23 2333455555543 56899999999999988655444433
No 376
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=83.53 E-value=2.4 Score=31.44 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=46.3
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
+.+++|.+++..-++.+++.++ ++..++|+.+...+...+ .+..+|+|+|.- -. ..++++.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~-~Gid~~~ 284 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDV------AS-RGLDIPL 284 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHH------HH-TTCCCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCc------cc-cCCCccC
Confidence 5579999999988776655443 466778877654443332 246789999942 12 4567788
Q ss_pred ccEEEEec
Q psy4275 150 IKFLVLDE 157 (182)
Q Consensus 150 ~~~iI~DE 157 (182)
++++|.-+
T Consensus 285 ~~~Vi~~~ 292 (337)
T 2z0m_A 285 VEKVINFD 292 (337)
T ss_dssp BSEEEESS
T ss_pred CCEEEEec
Confidence 88777643
No 377
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=83.51 E-value=2.9 Score=34.71 Aligned_cols=55 Identities=13% Similarity=0.014 Sum_probs=40.6
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEECh
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATP 132 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 132 (182)
+.++||.++++.-++.+++.++.. ++++..++|+.........-.+..+|+|+|.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 458999999999999888888765 6788888886433322233345788999994
No 378
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.46 E-value=0.93 Score=35.59 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=18.0
Q ss_pred hhhhhhCCCc--EEEECCCCChHHHHHH
Q psy4275 36 IIPHVLNDED--CIGCAKTGSGKTLAFA 61 (182)
Q Consensus 36 ~~~~~~~~~~--~li~~~tg~GKT~~~~ 61 (182)
.+..+.+|.| ++..|.||+|||.++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 3344556665 4556899999999863
No 379
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.45 E-value=1.3 Score=33.04 Aligned_cols=36 Identities=25% Similarity=0.107 Sum_probs=22.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
++-+.+.+++|+|||+.+...+...... +.+++++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEec
Confidence 4456677999999998765444333222 44666665
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.42 E-value=0.61 Score=31.60 Aligned_cols=21 Identities=19% Similarity=-0.083 Sum_probs=12.7
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp CCEEEEECCC----CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346789999999999986543
No 381
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=83.39 E-value=0.98 Score=34.72 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=18.0
Q ss_pred hhhhhhCCCc--EEEECCCCChHHHHHH
Q psy4275 36 IIPHVLNDED--CIGCAKTGSGKTLAFA 61 (182)
Q Consensus 36 ~~~~~~~~~~--~li~~~tg~GKT~~~~ 61 (182)
.+..+.+|.| ++..|+||+|||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3444555665 4556899999999863
No 382
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.39 E-value=0.82 Score=32.28 Aligned_cols=20 Identities=15% Similarity=-0.003 Sum_probs=15.7
Q ss_pred EEEECCCCChHHHHHHHHHH
Q psy4275 46 CIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 46 ~li~~~tg~GKT~~~~~~~~ 65 (182)
+++.||+|+||++.+....-
T Consensus 3 Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999988755443
No 383
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=83.31 E-value=1.2 Score=38.18 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=39.4
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--CC--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--TP--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+.+|..++ .++++.+.+...... .| ...-..++..+.. ++.+++.|++|+|||...-..+-+..
T Consensus 110 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla 181 (795)
T 1w7j_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (795)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHH
Confidence 45667766 466777777543322 22 2333455555543 56899999999999988655544433
No 384
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=83.28 E-value=0.76 Score=36.90 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=16.8
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
.+++++.||+|+|||..+-..
T Consensus 49 p~gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 356999999999999875433
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.26 E-value=1.1 Score=41.65 Aligned_cols=44 Identities=18% Similarity=0.017 Sum_probs=33.7
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTREL 86 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 86 (182)
+..+...++.|++|+|||..++..+...+.+ +.+++|+.-....
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te~~~ 74 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 74 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEecCcc
Confidence 4557899999999999999887777766544 4578888865443
No 386
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=83.19 E-value=1.2 Score=37.94 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=38.1
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--CC--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--TP--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
+.+|..++ .++++.+.+...... .| ...-..++..+.. ++.+++.|++|+|||...-..+-+
T Consensus 126 vNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~y 195 (770)
T 1w9i_A 126 VNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQY 195 (770)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHH
Confidence 45666666 466777776543322 22 2333445555443 568999999999999886544433
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.17 E-value=0.8 Score=32.27 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.0
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+..+++.|++|+|||+.+-...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999999865443
No 388
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.16 E-value=1.2 Score=42.12 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=33.9
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHH
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRE 85 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 85 (182)
.+..++++++.+|+|+|||..+...+.+...+ +.+++++.-...
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHA 1120 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSC
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEcccc
Confidence 34568899999999999999987777776655 557888875543
No 389
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=83.13 E-value=1 Score=34.67 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=15.2
Q ss_pred hhCCCc--EEEECCCCChHHHHH
Q psy4275 40 VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+.+|.| ++..|+||+|||...
T Consensus 85 ~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 85 VLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceeEEeecCCCCCCCEEe
Confidence 345554 555689999999885
No 390
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=83.09 E-value=1.7 Score=33.02 Aligned_cols=16 Identities=13% Similarity=-0.112 Sum_probs=13.3
Q ss_pred cEEEECCCCChHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAF 60 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~ 60 (182)
-+-+.||+|+|||+.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667799999999885
No 391
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=83.06 E-value=1 Score=34.70 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=15.3
Q ss_pred hhCCCc--EEEECCCCChHHHHH
Q psy4275 40 VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+.+|.| ++..|+||+|||.+.
T Consensus 101 ~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 101 FLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HTTTCCEEEEEECCTTSSHHHHH
T ss_pred HhCCCceEEEEeCCCCCCceeee
Confidence 345654 456689999999885
No 392
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=82.91 E-value=1 Score=34.84 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=15.6
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+.+|.| ++..|.||+|||...
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCeeEEEEeCCCCCCCceEe
Confidence 3445654 455689999999875
No 393
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.90 E-value=1 Score=34.82 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=15.8
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+..|.| ++..|+||+|||.+.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3445654 455689999999985
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=82.88 E-value=0.88 Score=32.26 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=15.7
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
.+++.|++|+|||+.+-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999998865443
No 395
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.86 E-value=0.88 Score=35.07 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.2
Q ss_pred cEEEECCCCChHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~ 61 (182)
-.++.||+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57789999999998743
No 396
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=82.82 E-value=1.2 Score=36.00 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=22.0
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
+.-+.+.|++|+|||+..-..+ ..+... ++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA-gll~~~--~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA-RQFEQQ--GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH-HHHHHT--TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHH-HHhhhc--CCeEEEe
Confidence 4467788999999998754332 222222 4467666
No 397
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.76 E-value=1.1 Score=34.20 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=16.4
Q ss_pred hhhhCCCc--EEEECCCCChHHHHH
Q psy4275 38 PHVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
..+.+|.| ++..|+||+|||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 74 TSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34455655 555689999999885
No 398
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=82.72 E-value=1.1 Score=34.41 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=15.8
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+.+|.| ++..|+||+|||.+.
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 3345654 456689999999885
No 399
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.66 E-value=0.72 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=19.3
Q ss_pred hhCCCcEEEECCCCChHHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++++++||||+|||..+--.
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~ 1287 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNA 1287 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHHHHH
Confidence 344889999999999999876333
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.62 E-value=0.94 Score=32.86 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=17.3
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+..+.+.||+|+|||+.+-...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678899999999998864443
No 401
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=82.60 E-value=0.93 Score=35.66 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=16.0
Q ss_pred hhhCCCc--EEEECCCCChHHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAFA 61 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~~ 61 (182)
.+..|.| ++..|.||+|||.+..
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHhcCCceeEEeecCCCCCCCeEee
Confidence 3445654 4556799999998853
No 402
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=82.58 E-value=0.69 Score=33.37 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=16.6
Q ss_pred hCCCcEEEECCCCChHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~ 60 (182)
..|.-..+.||+|+|||+..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34778889999999999874
No 403
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.51 E-value=1.1 Score=34.57 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=15.7
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+.+|.| ++..|+||+|||.+.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3445654 555689999999885
No 404
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=82.51 E-value=2.7 Score=33.63 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEE--------EcCCchhhhhHHh---
Q psy4275 53 GSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSII--------TGGMDMVDQGKEL--- 121 (182)
Q Consensus 53 g~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--- 121 (182)
.++|-....-.+...+.. ..+.++||.++++..++.+++.++......++++..+ +|+.+..++...+
T Consensus 370 ~~~K~~~L~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CCHHHHHHHHHHHHHHHH-CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhcC-CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 466655533333332221 2256899999999999998888876532223444433 3334333222222
Q ss_pred -c-CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEe
Q psy4275 122 -A-KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLD 156 (182)
Q Consensus 122 -~-~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~D 156 (182)
. +..+|+|+|.- -. ..+++..+++||.=
T Consensus 449 ~~~g~~~vLvaT~~------~~-~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 449 KTSKDNRLLIATSV------AD-EGIDIVQCNLVVLY 478 (556)
T ss_dssp -----CCEEEEEC------------------CEEEEE
T ss_pred cccCceEEEEEcCc------hh-cCCCchhCCEEEEe
Confidence 1 35689999932 12 44567777777653
No 405
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=82.48 E-value=4.9 Score=35.05 Aligned_cols=97 Identities=20% Similarity=0.142 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceE--------EEEEcCCchhhhhHHh---
Q psy4275 53 GSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRV--------SIITGGMDMVDQGKEL--- 121 (182)
Q Consensus 53 g~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--- 121 (182)
.++|.... .-++........+.++||.++++..++.+.+.++......++++ ..++|+.+..++...+
T Consensus 611 ~~~K~~~L-~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKLEEL-VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHHHHH-HHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCHHHHHH-HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 35665543 33333333223357999999999999999999887532223333 3334444443332222
Q ss_pred c--CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEec
Q psy4275 122 A--KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLDE 157 (182)
Q Consensus 122 ~--~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~DE 157 (182)
. +..+|+|+|.- -. ..+++..+++||.=+
T Consensus 690 r~~g~~~VLVaT~~------~~-eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 690 KTSKDNRLLIATSV------AD-EGIDIVQCNLVVLYE 720 (936)
T ss_dssp ----CCSEEEEECC-------------CCCCSEEEEES
T ss_pred hccCCeeEEEEeCc------hh-cCCcchhCCEEEEeC
Confidence 2 35689999931 12 456777888777543
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.39 E-value=0.77 Score=31.79 Aligned_cols=24 Identities=13% Similarity=-0.007 Sum_probs=19.3
Q ss_pred CCCcEEEECCCCChHHHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
.|+.+++.|++|+|||..++..+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999988655544
No 407
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=82.30 E-value=1 Score=35.00 Aligned_cols=21 Identities=33% Similarity=0.533 Sum_probs=15.2
Q ss_pred hhCCCc--EEEECCCCChHHHHH
Q psy4275 40 VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+.+|.| ++..|+||+|||.+.
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCeeeEEeecCCCCCCCEeE
Confidence 445654 455689999999885
No 408
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=82.30 E-value=1.1 Score=31.48 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.3
Q ss_pred CcEEEECCCCChHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~ 60 (182)
.-.++.||+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45788999999999874
No 409
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.28 E-value=0.87 Score=30.67 Aligned_cols=20 Identities=20% Similarity=0.004 Sum_probs=16.3
Q ss_pred hCCCcEEEECCCCChHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~ 60 (182)
..|.-+.+.||.|+|||+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 44667888999999999874
No 410
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=82.18 E-value=0.27 Score=39.13 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=0.0
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh----cCCCcEEEEChHHHHHHHhcCCCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL----AKKPHIVIATPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~ 149 (182)
..+++|.|+++.-++.+++.+... +..+..++|+.....+...+ .+..+|+|+|.- -. ..+++.+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~------~~-~GlDip~ 401 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CA-RGIDVEQ 401 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc------cc-cCCcccc
Confidence 457999999999888777776654 67788888887654443332 235789999932 11 3456666
Q ss_pred ccEEE
Q psy4275 150 IKFLV 154 (182)
Q Consensus 150 ~~~iI 154 (182)
+++||
T Consensus 402 v~~VI 406 (479)
T 3fmp_B 402 VSVVI 406 (479)
T ss_dssp -----
T ss_pred CCEEE
Confidence 76665
No 411
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=82.17 E-value=0.94 Score=34.55 Aligned_cols=26 Identities=23% Similarity=-0.011 Sum_probs=19.9
Q ss_pred hCCCcEEEECCCCChHHHHHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
..+...++.||+|+|||..+...+..
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 34566799999999999887665544
No 412
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.17 E-value=1.3 Score=39.29 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=39.3
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--CC--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHhh
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--TP--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQKW 68 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~~ 68 (182)
+.+|..++ .++++.+.+...... .| ...=..++..+.. +..+++.|.+|+|||.+.-..+-+..
T Consensus 110 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla 181 (1080)
T 2dfs_A 110 INPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (1080)
T ss_dssp ECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHH
Confidence 45667766 466777766543322 23 2333445555543 56899999999999988655554443
No 413
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.17 E-value=1.1 Score=33.46 Aligned_cols=35 Identities=14% Similarity=-0.011 Sum_probs=22.3
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
-+.+.+++|+|||+.+...+...... +.+++++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEec
Confidence 46677999999998765444333222 446666653
No 414
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=82.10 E-value=1.1 Score=34.62 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=16.5
Q ss_pred hhhhCCCc--EEEECCCCChHHHHH
Q psy4275 38 PHVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
..+.+|.| ++..|+||+|||.++
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHhCCceeEEEeeCCCCCCCceEE
Confidence 34455665 455689999999985
No 415
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=82.05 E-value=0.83 Score=32.48 Aligned_cols=20 Identities=20% Similarity=0.066 Sum_probs=16.8
Q ss_pred hCCCcEEEECCCCChHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~ 60 (182)
..|.-+.+.||+|+|||+..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34778889999999999874
No 416
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=81.89 E-value=1.1 Score=34.66 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=15.6
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+.+|.| ++..|+||+|||.+.
T Consensus 98 ~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 98 QALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCceEEEEECCCCCCCceEe
Confidence 3445655 455579999999885
No 417
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=81.72 E-value=2.2 Score=37.33 Aligned_cols=76 Identities=12% Similarity=0.239 Sum_probs=53.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh---cC-C--CcEEEEChHHHHHHHhcCCCCCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL---AK-K--PHIVIATPGRLADHLDTCNTFSL 147 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~--~~Ilv~T~~~l~~~~~~~~~~~~ 147 (182)
+.+++|.+++..-++.+.+.+.. ..|+++..++|+.+..++...+ .+ . .+|+|+| .. -. ..+++
T Consensus 503 ~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT-~v-----~~-~GlDl 572 (968)
T 3dmq_A 503 SQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS-EI-----GS-EGRNF 572 (968)
T ss_dssp SSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS-CC-----TT-CSSCC
T ss_pred CCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec-ch-----hh-cCCCc
Confidence 56899999999988887777664 2378999999998765444332 22 3 8899999 21 12 45677
Q ss_pred CCccEEEEeccc
Q psy4275 148 NRIKFLVLDEAD 159 (182)
Q Consensus 148 ~~~~~iI~DE~h 159 (182)
..++++|+-+..
T Consensus 573 ~~~~~VI~~d~p 584 (968)
T 3dmq_A 573 QFASHMVMFDLP 584 (968)
T ss_dssp TTCCEEECSSCC
T ss_pred ccCcEEEEecCC
Confidence 788888776554
No 418
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.70 E-value=0.53 Score=40.33 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=17.8
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.++++++.||+|+|||..+-..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHH
Confidence 3678999999999999875433
No 419
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=81.65 E-value=1.2 Score=34.85 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=16.1
Q ss_pred hhhCCCc--EEEECCCCChHHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAFA 61 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~~ 61 (182)
.+.+|.| ++..|.||+|||.+..
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHhcCCceEEEEecCCCCCCCeEec
Confidence 3445654 5556899999998853
No 420
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=81.63 E-value=1 Score=34.77 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=15.8
Q ss_pred hhhCCCc--EEEECCCCChHHHHH
Q psy4275 39 HVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 39 ~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
.+..|.| ++..|.||+|||.++
T Consensus 83 ~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 83 EVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCCceEE
Confidence 3445664 455689999999885
No 421
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=81.63 E-value=2.8 Score=28.67 Aligned_cols=18 Identities=28% Similarity=0.158 Sum_probs=14.3
Q ss_pred CcEEEECCCCChHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~ 61 (182)
+-+.+.|++|+|||+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 346788999999998743
No 422
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.62 E-value=1.1 Score=34.44 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=15.2
Q ss_pred hhCCCc--EEEECCCCChHHHHH
Q psy4275 40 VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+.+|.| ++..|+||+|||..+
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 73 AIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHcCCccceeeecCCCCCCCeEE
Confidence 345654 455689999999885
No 423
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.60 E-value=0.94 Score=31.17 Aligned_cols=18 Identities=33% Similarity=0.174 Sum_probs=14.8
Q ss_pred cEEEECCCCChHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~ 62 (182)
.+.+.|++|+|||+++-.
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477889999999988644
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=81.58 E-value=0.64 Score=33.20 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.9
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-..+.||+|+|||+..
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp TTCEEEEEECTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999764
No 425
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.55 E-value=1.4 Score=35.60 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=28.1
Q ss_pred hhCCCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTR 84 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 84 (182)
+..|.-..+.|++|+|||+.+...+..... . +.+++++++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~--G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACA-N--KERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT-T--TCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-C--CCCEEEEEEeC
Confidence 455778899999999999876554433322 2 44577776544
No 426
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=81.55 E-value=1.2 Score=38.32 Aligned_cols=63 Identities=14% Similarity=0.283 Sum_probs=38.7
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--CC--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--TP--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+.+|..++ .++++.+.+...... .| ...=..++..+.. ++.+++.|++|+|||.+.-..+-+.
T Consensus 123 vNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yl 193 (837)
T 1kk8_A 123 VNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYL 193 (837)
T ss_dssp ECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHH
Confidence 45666776 467777777543322 23 2333445555543 5679999999999998865444433
No 427
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.46 E-value=0.95 Score=34.89 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.8
Q ss_pred CcEEEECCCCChHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~ 61 (182)
+-.++.|+||+|||...-
T Consensus 26 gl~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 457899999999998743
No 428
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=81.46 E-value=1.1 Score=34.70 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.1
Q ss_pred CCc--EEEECCCCChHHHHHH
Q psy4275 43 DED--CIGCAKTGSGKTLAFA 61 (182)
Q Consensus 43 ~~~--~li~~~tg~GKT~~~~ 61 (182)
|.+ ++..|+||+|||.++.
T Consensus 83 G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEEe
Confidence 665 4777899999998853
No 429
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.45 E-value=2.4 Score=28.94 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=13.6
Q ss_pred cEEEECCCCChHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~ 61 (182)
-+.+.|++|+|||+...
T Consensus 6 ~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998743
No 430
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=81.44 E-value=0.81 Score=39.24 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.8
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.++++++.||+|+|||..+-..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLaral 258 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHH
Confidence 3678999999999999875433
No 431
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=81.39 E-value=1.2 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=15.4
Q ss_pred hhCCCc--EEEECCCCChHHHHH
Q psy4275 40 VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+.+|.| ++..|.||+|||.++
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 345654 555689999999886
No 432
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=81.38 E-value=1.7 Score=31.91 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.6
Q ss_pred CCcEEEECCCCChHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~ 60 (182)
|....+.||+|+|||+..
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 667889999999999874
No 433
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.37 E-value=1 Score=41.72 Aligned_cols=44 Identities=18% Similarity=-0.003 Sum_probs=34.5
Q ss_pred CCcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQ 89 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 89 (182)
|+-+.+.+|.|+|||+.++..+.+...+ +..++++.+..++...
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHH
Confidence 5678999999999999987777665444 5689999998777544
No 434
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=81.34 E-value=10 Score=27.75 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh---cC--CCc
Q psy4275 52 TGSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL---AK--KPH 126 (182)
Q Consensus 52 tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 126 (182)
..+||... +.-++..+... +.++||.+.+...++.+.+.+... .++.+..++|+.+..++...+ .+ ...
T Consensus 93 ~~s~K~~~-L~~ll~~~~~~--~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~ 166 (271)
T 1z5z_A 93 RRSGKMIR-TMEIIEEALDE--GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSVK 166 (271)
T ss_dssp TTCHHHHH-HHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTCC
T ss_pred ccCHHHHH-HHHHHHHHHhC--CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCCC
Confidence 45667554 33333333222 458999999999888777776552 257788899988765444332 12 345
Q ss_pred -EEEEChHHHHHHHhcCCCCCCCCccEEEE
Q psy4275 127 -IVIATPGRLADHLDTCNTFSLNRIKFLVL 155 (182)
Q Consensus 127 -Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~ 155 (182)
++++| ... ...+++...+.+|+
T Consensus 167 v~L~st-~~~------g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 167 FIVLSV-KAG------GFGINLTSANRVIH 189 (271)
T ss_dssp EEEEEC-CTT------CCCCCCTTCSEEEE
T ss_pred EEEEeh-hhh------cCCcCcccCCEEEE
Confidence 45555 211 13456666665554
No 435
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=81.32 E-value=0.81 Score=33.90 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999874
No 436
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=81.29 E-value=1.4 Score=38.76 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=38.7
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--CC--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHH
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--TP--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQ 66 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~ 66 (182)
+.+|..++ .++++.+.+...... .| ...=..++..+.. +..+++.|.+|+|||.+.-..+-+
T Consensus 100 vNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~y 169 (995)
T 2ycu_A 100 INPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 169 (995)
T ss_dssp ECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHH
T ss_pred eCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHH
Confidence 45667776 467777777543322 23 2333445555543 568999999999999886544443
No 437
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.29 E-value=1.5 Score=37.19 Aligned_cols=19 Identities=32% Similarity=0.123 Sum_probs=15.9
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
++++.||+|+|||..+-..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5999999999999886433
No 438
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=81.28 E-value=1.6 Score=34.44 Aligned_cols=35 Identities=26% Similarity=0.117 Sum_probs=22.4
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+.+.+.+++|+|||+.+...+.... .. +.+++++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~-~~--g~~Vllvd 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYK-GK--GRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEee
Confidence 3466779999999988654443332 22 44666665
No 439
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=81.26 E-value=0.65 Score=33.67 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=16.6
Q ss_pred CCcEEEECCCCChHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~ 63 (182)
+..+++.|++|+|||+.+-..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 446889999999999886443
No 440
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=81.24 E-value=1 Score=33.08 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999874
No 441
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=81.23 E-value=1.2 Score=35.17 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=16.4
Q ss_pred hhhhCCCc--EEEECCCCChHHHHH
Q psy4275 38 PHVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
..+..|.| ++..|+||+|||.+.
T Consensus 132 ~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 132 QSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHCCCceEEEEecCCCCCCeeEe
Confidence 44455654 455689999999985
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=81.21 E-value=0.83 Score=32.74 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-..+.||+|+|||+..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778889999999999874
No 443
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=81.10 E-value=0.81 Score=33.23 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778889999999999874
No 444
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=81.08 E-value=1.1 Score=31.13 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=15.2
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
.+.+.|++|||||+++-...
T Consensus 14 iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35678999999999865443
No 445
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.07 E-value=0.75 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-..+.||+|+|||+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999874
No 446
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.02 E-value=0.77 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999874
No 447
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=81.01 E-value=3.6 Score=34.49 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=40.9
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHhcCCCcEEEECh
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKELAKKPHIVIATP 132 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~T~ 132 (182)
+.++||.++++.-++.+++.+++. ++++..++|+....+. ..++.+|+|+|.
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd 447 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD 447 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC
Confidence 458999999999999888877654 7889999998876542 234569999994
No 448
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=80.97 E-value=0.8 Score=33.58 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999874
No 449
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=80.80 E-value=4.5 Score=34.45 Aligned_cols=96 Identities=17% Similarity=0.104 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCc--------eEEEEEcCCchhhhhHHh---
Q psy4275 53 GSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNL--------RVSIITGGMDMVDQGKEL--- 121 (182)
Q Consensus 53 g~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~--- 121 (182)
.++|.....-.+...+... .+.++||.++++..++.+.+.++......++ ....++|+.+..++...+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~-~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYN-PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHC-SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CChHHHHHHHHHHHHhccC-CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 4667655333333322222 2568999999999999999888774322223 333334444433332222
Q ss_pred c--CCCcEEEEChHHHHHHHhcCCCCCCCCccEEEEe
Q psy4275 122 A--KKPHIVIATPGRLADHLDTCNTFSLNRIKFLVLD 156 (182)
Q Consensus 122 ~--~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI~D 156 (182)
. +..+|+|+|.- -. ..+++..+++||.=
T Consensus 690 ~~~g~~~vLVaT~~------~~-~GIDlp~v~~VI~y 719 (797)
T 4a2q_A 690 KTSKDNRLLIATSV------AD-EGIDIVQCNLVVLY 719 (797)
T ss_dssp ----CCSEEEEECC--------------CCCSEEEEE
T ss_pred hccCCceEEEEcCc------hh-cCCCchhCCEEEEe
Confidence 2 35689999932 11 45677778877753
No 450
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=80.79 E-value=1.1 Score=32.65 Aligned_cols=19 Identities=21% Similarity=0.106 Sum_probs=16.3
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999874
No 451
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=80.73 E-value=1.1 Score=34.68 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=15.1
Q ss_pred hhCCCc--EEEECCCCChHHHHH
Q psy4275 40 VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+.+|.| ++..|.||+|||...
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCceEEEEeecCCCCCcceec
Confidence 344554 555689999999885
No 452
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.72 E-value=1 Score=38.09 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=17.9
Q ss_pred CCcEEEECCCCChHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~ 64 (182)
+++.++.||+|+|||..+-...
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHH
Confidence 5789999999999998854433
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=80.63 E-value=0.88 Score=33.32 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.4
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778889999999999874
No 454
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=80.60 E-value=0.82 Score=33.29 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.6
Q ss_pred hCCCcEEEECCCCChHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~ 60 (182)
..|....+.||+|+|||+..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 34777889999999999874
No 455
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=80.48 E-value=1.2 Score=31.20 Aligned_cols=20 Identities=20% Similarity=-0.032 Sum_probs=15.7
Q ss_pred CcEEEECCCCChHHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~ 63 (182)
..+.+.|++|+|||+.+-..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35788999999999876443
No 456
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=80.33 E-value=1.2 Score=34.77 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=20.8
Q ss_pred ChHHHHhhhhh--------hhCCCc--EEEECCCCChHHHHH
Q psy4275 29 PTEIQKAIIPH--------VLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 29 ~~~~Q~~~~~~--------~~~~~~--~li~~~tg~GKT~~~ 60 (182)
+..-|.+.+.. +.+|.| ++..|+||+|||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34456665543 344654 455689999999885
No 457
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=80.31 E-value=1.1 Score=34.79 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=16.1
Q ss_pred hhhhCCCc--EEEECCCCChHHHHH
Q psy4275 38 PHVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
..+.+|.| ++..|+||+|||.+.
T Consensus 73 ~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 73 QSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhhhcCCceEEEEECCCCCCCeEee
Confidence 33445654 455689999999885
No 458
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=80.29 E-value=1.3 Score=34.44 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=16.1
Q ss_pred hhhhCCCc--EEEECCCCChHHHHH
Q psy4275 38 PHVLNDED--CIGCAKTGSGKTLAF 60 (182)
Q Consensus 38 ~~~~~~~~--~li~~~tg~GKT~~~ 60 (182)
..+.+|.| ++..|.||+|||..+
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 33445654 455689999999885
No 459
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=80.27 E-value=2.6 Score=36.08 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=39.2
Q ss_pred cCCccCC-C-CCHHHHHHHHHCCCCC--C--hHHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 5 IKSFTDL-K-LNPWLIRQCQTIGVKT--P--TEIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 5 ~~~~~~~-~-l~~~i~~~l~~~~~~~--~--~~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+.+|..+ + .+++..+.+......+ | ...-..++..+.. ++.+++.|++|+|||.+.-..+-+.
T Consensus 93 VNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yl 164 (784)
T 2v26_A 93 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYL 164 (784)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHH
Confidence 4567777 3 4677777776443322 2 3333455555543 5689999999999998755444433
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=80.21 E-value=0.81 Score=33.08 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=16.2
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|..+.+.||+|+|||+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp TTEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999874
No 461
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=80.20 E-value=0.92 Score=33.38 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 36 ~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp TTCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4777889999999999874
No 462
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=80.18 E-value=1.2 Score=34.59 Aligned_cols=21 Identities=24% Similarity=0.050 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~ 62 (182)
.++.+.+.||+|+|||+.+-.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 367889999999999987543
No 463
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.01 E-value=0.91 Score=33.22 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677889999999999874
No 464
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.00 E-value=0.75 Score=34.67 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=19.2
Q ss_pred CCCcEEEECCCCChHHHHHHHHHHHhhc
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALPILQKWC 69 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~~~~~~~ 69 (182)
.|..+.+.||+|+|||+.. -++..++
T Consensus 79 ~Ge~vaivG~sGsGKSTLl--~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTIL--RLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHH--HHHTTSS
T ss_pred CCCEEEEECCCCchHHHHH--HHHHcCC
Confidence 3778889999999999875 3444433
No 465
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=79.96 E-value=1.1 Score=32.19 Aligned_cols=20 Identities=20% Similarity=-0.090 Sum_probs=15.5
Q ss_pred CCcEEEECCCCChHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~ 62 (182)
+.-+-+.||+|+|||+.+-.
T Consensus 25 g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 44567889999999988643
No 466
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=79.92 E-value=0.89 Score=33.40 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 32 ~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4777889999999999874
No 467
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=79.85 E-value=0.92 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.0
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 49 ~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCCcHHHHH
Confidence 3677889999999999874
No 468
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=79.75 E-value=2.6 Score=29.51 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=20.6
Q ss_pred EEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEcC
Q psy4275 47 IGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLTP 82 (182)
Q Consensus 47 li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~p 82 (182)
+.....|.|||+++.-.+.....+ +.+++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~---G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAA---GYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHT---TCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcc
Confidence 344568999999876555443333 456777644
No 469
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=79.43 E-value=0.92 Score=33.08 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-..+.||+|+|||+..
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp TTCEEEEECCSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999874
No 470
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.38 E-value=0.91 Score=38.92 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.3
Q ss_pred CCcEEEECCCCChHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~ 61 (182)
-+.+++.||+|+|||..+-
T Consensus 238 p~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999998864
No 471
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=79.34 E-value=1.3 Score=31.65 Aligned_cols=21 Identities=24% Similarity=0.026 Sum_probs=17.2
Q ss_pred CCCcEEEECCCCChHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~ 62 (182)
.+..+++.|+.|+|||+.+-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 466788999999999988543
No 472
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=79.28 E-value=10 Score=30.91 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=48.5
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhcc----CCceEEEEEcCCch--hhhhHHhcC-CCc---EEEEChHHHHHHHhcCC
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKV----MNLRVSIITGGMDM--VDQGKELAK-KPH---IVIATPGRLADHLDTCN 143 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~-~~~---Ilv~T~~~l~~~~~~~~ 143 (182)
+.++||.|+++.-++.+++.+++.... .+-.+..++|.... ........+ +.+ |+|+| +. -. .
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt-~~-----l~-~ 511 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTS-QL-----LT-T 511 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEES-ST-----TT-T
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEEC-Ch-----hh-c
Confidence 468999999999999999888776432 22336667777653 111122222 233 67776 11 11 4
Q ss_pred CCCCCCccEEEEecc
Q psy4275 144 TFSLNRIKFLVLDEA 158 (182)
Q Consensus 144 ~~~~~~~~~iI~DE~ 158 (182)
.+++..++++|++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 567888888888654
No 473
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=79.22 E-value=8.6 Score=32.17 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=50.4
Q ss_pred CeeEEEEcCCHHHHHHHHHHHHHhhcc--------------------------------CCceEEEEEcCCchhhhhHHh
Q psy4275 74 GIFALVLTPTRELAYQIGDQFLVLGKV--------------------------------MNLRVSIITGGMDMVDQGKEL 121 (182)
Q Consensus 74 ~~~~lil~p~~~l~~q~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 121 (182)
+.++||.+|++.-++.+++.+...... ....+..++|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 568999999999999988887764321 113478889888765544332
Q ss_pred ----cCCCcEEEEChHHHHHHHhcCCCCCCCCccEEE
Q psy4275 122 ----AKKPHIVIATPGRLADHLDTCNTFSLNRIKFLV 154 (182)
Q Consensus 122 ----~~~~~Ilv~T~~~l~~~~~~~~~~~~~~~~~iI 154 (182)
.+..+|+|+|.- -. ..+++..+.+||
T Consensus 332 ~~f~~g~~~vlvaT~~------l~-~Gidip~~~~VI 361 (715)
T 2va8_A 332 EGFRQRKIKVIVATPT------LA-AGVNLPARTVII 361 (715)
T ss_dssp HHHHTTCSCEEEECGG------GG-GSSCCCBSEEEE
T ss_pred HHHHcCCCeEEEEChH------Hh-cccCCCceEEEE
Confidence 246789999932 22 445777777655
No 474
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.15 E-value=1.3 Score=30.80 Aligned_cols=19 Identities=21% Similarity=-0.197 Sum_probs=15.1
Q ss_pred CCcEEEECCCCChHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~ 61 (182)
+.-+.+.|++|+|||+.+-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457788999999998754
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.14 E-value=1.1 Score=36.25 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=23.6
Q ss_pred hhhCCCcEEEECCCCChHHHHHHHHHHHhhcc
Q psy4275 39 HVLNDEDCIGCAKTGSGKTLAFALPILQKWCE 70 (182)
Q Consensus 39 ~~~~~~~~li~~~tg~GKT~~~~~~~~~~~~~ 70 (182)
.+..|....+.||+|+|||+.+...++..+..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 34557889999999999999876654444443
No 476
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=79.14 E-value=1.2 Score=35.91 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.9
Q ss_pred CcEEEECCCCChHHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~ 62 (182)
+.+++.||+|+|||..+-.
T Consensus 65 ~GvLL~GppGtGKTtLara 83 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SEEEEECSSSSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4699999999999988643
No 477
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=79.11 E-value=2 Score=32.36 Aligned_cols=34 Identities=29% Similarity=0.138 Sum_probs=22.2
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
-.+..+..|.|||+++...+...... +.+++++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARS---GKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC---CCcEEEEe
Confidence 34566789999999876665554433 44566554
No 478
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=79.07 E-value=1.4 Score=39.56 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=39.3
Q ss_pred cCCccCCC-CCHHHHHHHHHCCCC--CCh--HHHHhhhhhhhC---CCcEEEECCCCChHHHHHHHHHHHh
Q psy4275 5 IKSFTDLK-LNPWLIRQCQTIGVK--TPT--EIQKAIIPHVLN---DEDCIGCAKTGSGKTLAFALPILQK 67 (182)
Q Consensus 5 ~~~~~~~~-l~~~i~~~l~~~~~~--~~~--~~Q~~~~~~~~~---~~~~li~~~tg~GKT~~~~~~~~~~ 67 (182)
+.+|..++ .++++.+.+...... .|. ..=..++..+.. +..+++.|.+|+|||.+.-..+-+.
T Consensus 123 vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yl 193 (1184)
T 1i84_S 123 INPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL 193 (1184)
T ss_dssp ECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHH
T ss_pred eCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHH
Confidence 45677776 467777777543332 232 233445555543 5678899999999998865444443
No 479
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=79.06 E-value=1.1 Score=33.13 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777889999999999764
No 480
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=78.84 E-value=2.4 Score=32.04 Aligned_cols=33 Identities=21% Similarity=0.012 Sum_probs=22.4
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEE
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVL 80 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil 80 (182)
-.+..+..|.|||+++...+...... |.+++++
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~---G~rVllv 53 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKV---RSSVLLI 53 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTS---SSCEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC---CCeEEEE
Confidence 35566789999999876555554433 4567766
No 481
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=78.56 E-value=1.2 Score=43.89 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=17.8
Q ss_pred hhCCCcEEEECCCCChHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~ 60 (182)
+..+++++++||||+|||...
T Consensus 1301 l~~~~pvLL~GptGtGKT~li 1321 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMTL 1321 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHHH
T ss_pred HHCCCcEEEECCCCCCHHHHH
Confidence 455889999999999999764
No 482
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=78.53 E-value=1.5 Score=32.46 Aligned_cols=19 Identities=21% Similarity=-0.011 Sum_probs=15.4
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+++.|++|+|||+.+-..
T Consensus 4 ~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4688999999999986443
No 483
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=78.53 E-value=2.4 Score=33.52 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=22.7
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
.+++.+++|+|||+.+.-.+....... +.+++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~--G~kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKH--KKKVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTS--CCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEEe
Confidence 566779999999998655554433221 34666665
No 484
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=78.43 E-value=1.1 Score=33.16 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=16.1
Q ss_pred CCCcEEEECCCCChHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~ 60 (182)
.|.-+.+.||+|+|||+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4677889999999999874
No 485
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=78.36 E-value=2.5 Score=32.29 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=21.6
Q ss_pred cEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 45 DCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
-.+..+..|.|||+++...+...... +.+++++-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~---G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEK---GLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHS---SCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 35666789999999876555554333 34555554
No 486
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=78.20 E-value=1.3 Score=31.78 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=15.1
Q ss_pred hhCCCcEEEECCCCChHHHHHHH
Q psy4275 40 VLNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 40 ~~~~~~~li~~~tg~GKT~~~~~ 62 (182)
+..|.-+++.|+.|+|||+.+-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 34577889999999999988543
No 487
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=78.09 E-value=2.2 Score=33.54 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=18.5
Q ss_pred hCCCcEEEECCCCChHHHHHHH
Q psy4275 41 LNDEDCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 41 ~~~~~~li~~~tg~GKT~~~~~ 62 (182)
-+|+...+.+|+|+|||..+..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHH
Confidence 3488999999999999988643
No 488
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.06 E-value=1.3 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=15.5
Q ss_pred cEEEECCCCChHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFAL 62 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~ 62 (182)
++++.||+|+|||..+-.
T Consensus 490 ~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 689999999999988643
No 489
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=78.04 E-value=2.5 Score=31.57 Aligned_cols=22 Identities=14% Similarity=-0.096 Sum_probs=17.8
Q ss_pred CCCcEEEECCCCChHHHHHHHH
Q psy4275 42 NDEDCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 42 ~~~~~li~~~tg~GKT~~~~~~ 63 (182)
.++.+++.|+.|+|||......
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHH
Confidence 3678999999999999875443
No 490
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=78.01 E-value=2 Score=32.32 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.0
Q ss_pred cEEEECCCCChHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~ 61 (182)
-.++.|+.|+|||+..-
T Consensus 6 v~~i~G~~GaGKTTll~ 22 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLR 22 (318)
T ss_dssp EEEEEESSSSSCHHHHH
T ss_pred EEEEEecCCCCHHHHHH
Confidence 36789999999998753
No 491
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=77.90 E-value=2.5 Score=34.67 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=23.8
Q ss_pred CcEEEECCCCChHHHHHHHHHHHhhccCCCCeeEEEEc
Q psy4275 44 EDCIGCAKTGSGKTLAFALPILQKWCEDPYGIFALVLT 81 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~~~~~~~~~~~~~~~~~lil~ 81 (182)
+-.++.+..|.|||+++...+...... +.++++|-
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQ---GKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHC---CCcEEEEE
Confidence 456777899999999877666554433 44566643
No 492
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=77.85 E-value=20 Score=30.62 Aligned_cols=62 Identities=16% Similarity=0.272 Sum_probs=42.6
Q ss_pred CChHHHHHHHHHHHhhccCCCCeeEEEEcCCHHHHHHHHHHHHHhhccCCceEEEEEcCCchhhhhHHh
Q psy4275 53 GSGKTLAFALPILQKWCEDPYGIFALVLTPTRELAYQIGDQFLVLGKVMNLRVSIITGGMDMVDQGKEL 121 (182)
Q Consensus 53 g~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (182)
.+||... +.-++..+... +.++||.+.....++.+.+.+... ++++..++|+.+..++...+
T Consensus 554 ~s~K~~~-L~~lL~~~~~~--g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i 615 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLKKD--GHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISI 615 (800)
T ss_dssp TCHHHHH-HHHHHHHHTTT--TCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHH
T ss_pred cChHHHH-HHHHHHHHhhC--CCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHH
Confidence 4677555 33444444333 568999999998877777666544 78899999998876655444
No 493
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.84 E-value=0.86 Score=31.16 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=13.6
Q ss_pred cEEEECCCCChHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~ 61 (182)
.+.+.|++|+|||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35678999999998753
No 494
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=77.82 E-value=3 Score=32.23 Aligned_cols=71 Identities=15% Similarity=0.062 Sum_probs=47.7
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccCCceEE-EEEcCCchhhhhHHhcCCCcEEEE----ChHHHHHHHhcCCCCCCCC
Q psy4275 75 IFALVLTPTRELAYQIGDQFLVLGKVMNLRVS-IITGGMDMVDQGKELAKKPHIVIA----TPGRLADHLDTCNTFSLNR 149 (182)
Q Consensus 75 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ilv~----T~~~l~~~~~~~~~~~~~~ 149 (182)
.++||.++++.-++.+++.++.. ++++. .++|... . ....-.+..+|+|+ |.- -. ..+++++
T Consensus 253 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~~r-~-~~~f~~g~~~vLvat~s~T~~------~~-~GiDip~ 319 (414)
T 3oiy_A 253 DGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEFEK-N-FEDFKVGKINILIGVQAYYGK------LT-RGVDLPE 319 (414)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCHHH-H-HHHHHTTSCSEEEEECCTTCC------CC-CCCCCTT
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCcch-H-HHHHhCCCCeEEEEecCcCch------hh-ccCcccc
Confidence 57999999999998888887764 67776 6666421 1 22222357899999 621 12 5578888
Q ss_pred -ccEEEEecc
Q psy4275 150 -IKFLVLDEA 158 (182)
Q Consensus 150 -~~~iI~DE~ 158 (182)
++++|.-+.
T Consensus 320 ~v~~VI~~~~ 329 (414)
T 3oiy_A 320 RIKYVIFWGT 329 (414)
T ss_dssp TCCEEEEESC
T ss_pred ccCEEEEECC
Confidence 888875433
No 495
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.71 E-value=1.6 Score=31.49 Aligned_cols=19 Identities=26% Similarity=-0.032 Sum_probs=15.3
Q ss_pred cEEEECCCCChHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALP 63 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~ 63 (182)
.+.+.|++|+|||+.+-..
T Consensus 24 iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4778899999999986543
No 496
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=77.47 E-value=1.6 Score=32.45 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=13.8
Q ss_pred cEEEECCCCChHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~ 61 (182)
-+.+.|++|+|||+.+-
T Consensus 33 ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999998753
No 497
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.46 E-value=1.7 Score=32.97 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=14.5
Q ss_pred CcEEEECCCCChHHHHHH
Q psy4275 44 EDCIGCAKTGSGKTLAFA 61 (182)
Q Consensus 44 ~~~li~~~tg~GKT~~~~ 61 (182)
+-.++.||+|+|||...-
T Consensus 24 ~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 346789999999998744
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=77.39 E-value=1.2 Score=31.75 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=15.1
Q ss_pred CCcEEEECCCCChHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAF 60 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~ 60 (182)
|.-+.+.|+.|+|||+.+
T Consensus 20 g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CEEEEEECSTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 556788899999999864
No 499
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=77.11 E-value=6.2 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=18.7
Q ss_pred CCcEEEECCCCChHHHHHHHHHH
Q psy4275 43 DEDCIGCAKTGSGKTLAFALPIL 65 (182)
Q Consensus 43 ~~~~li~~~tg~GKT~~~~~~~~ 65 (182)
|+.+++.|++|+|||..++..+-
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 67899999999999987655443
No 500
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=77.07 E-value=1.5 Score=32.36 Aligned_cols=20 Identities=20% Similarity=-0.079 Sum_probs=15.9
Q ss_pred cEEEECCCCChHHHHHHHHH
Q psy4275 45 DCIGCAKTGSGKTLAFALPI 64 (182)
Q Consensus 45 ~~li~~~tg~GKT~~~~~~~ 64 (182)
.+.+.|++|+|||+++-...
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47888999999998865443
Done!